BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016292
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTS
Sbjct: 59 LNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTS 118
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
SD GDN TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L +
Sbjct: 119 SDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKN 176
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQ 211
+INLKG +GN IDD G F+F+W H + SD+T + + C + S +CD
Sbjct: 177 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 236
Query: 212 YQTQGVREYGQIDLYNVYAPLC 233
E G ID+Y++Y P+C
Sbjct: 237 ATDVATAEQGNIDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTS
Sbjct: 55 LNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTS 114
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
SD GDN TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L +
Sbjct: 115 SDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKN 172
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQ 211
+INLKG +GN IDD G F+F+W H + SD+T + + C + S +CD
Sbjct: 173 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 232
Query: 212 YQTQGVREYGQIDLYNVYAPLC 233
E G ID+Y++Y P+C
Sbjct: 233 ATDVATAEQGNIDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTS
Sbjct: 54 LNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTS 113
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
SD GDN TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L +
Sbjct: 114 SDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKN 171
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQ 211
+INLKG +GN IDD G F+F+W H + SD+T + + C + S +CD
Sbjct: 172 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 231
Query: 212 YQTQGVREYGQIDLYNVYAPLC 233
E G ID+Y++Y P+C
Sbjct: 232 ATDVATAEQGNIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 132/202 (65%), Gaps = 3/202 (1%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTS
Sbjct: 59 LNGGPGCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTS 118
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
SD GDN TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L +
Sbjct: 119 SDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKN 176
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQ 211
+INLKG +GN IDD G F+F+W H + SD+T + + C + S +CD
Sbjct: 177 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 236
Query: 212 YQTQGVREYGQIDLYNVYAPLC 233
E G ID+Y++Y P+C
Sbjct: 237 ATDVATAEQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 134/208 (64%), Gaps = 4/208 (1%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+G GAM+ELG FRV+++G++L NEYAWN AN+LF E+PAGVGFSYSNTS
Sbjct: 60 LNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTS 119
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
SD S GD+ A+D+YTFLV WFERFP Y R+F+I GES GH++PQL+ + +
Sbjct: 120 SDLSM-GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNS 176
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLST-SCDQ 211
IN +G+ + + +D+ GMF+ +W H L SDET + K C + T C +
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTE 236
Query: 212 YQTQGVREYGQIDLYNVYAPLCKSSAPP 239
+ + E G I+ Y +Y P C P
Sbjct: 237 VWNKALAEQGNINPYTIYTPTCDREPSP 264
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 194/406 (47%), Gaps = 60/406 (14%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+
Sbjct: 54 LNGGPGCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK 112
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
+N D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ +
Sbjct: 113 FYATN--DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS-- 168
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLS 206
+NL+G+A+GN + F + H L +S +T+ C+F +
Sbjct: 169 --MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-D 225
Query: 207 TSCDQYQTQGVREYGQ--IDLYNVYAPLCKSSAPPP------------------------ 240
C + R G +++YN+YAP C P
Sbjct: 226 LECVTNLQEVARIVGNSGLNIYNLYAP-CAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKR 284
Query: 241 -------PTAGVIREYDPCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTD 287
+ +R PC++ S YLN V+ AL+ W C+ +L +
Sbjct: 285 MWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRR 344
Query: 288 SPSTVLPTIQQLIAS-GIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YAD 343
++ +L++S ++ +Y+GD D + +++LN +E PW Y D
Sbjct: 345 LYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD 404
Query: 344 G--EVGGYVLGYKGVIFTTVRGAGHLVPTYQPQRALIMISSFLEGK 387
++ G+V + + F T++GAGH+VPT +P A M S FL +
Sbjct: 405 SGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 249 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 300
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 301 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 360
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 361 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 390
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 249 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 300
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 301 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 360
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 361 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 390
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 249 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 300
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 301 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 360
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 361 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 390
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 249 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 300
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 301 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 360
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 361 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 390
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 11/155 (7%)
Query: 249 YDPCSDKYVNSYLNLAEVQAALHAKHTN-----WSTCSDLT---WTDSPSTVLPTIQQLI 300
YDPC+ +YLNL EVQ ALHA + W+ CS+ W + +LP ++LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 301 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYA---DGEVGGYVLGYKGVI 357
+G+RVW+YSGDTD VPV+S+R S+ AL LPV+T+WYPWY + EVGG+ + Y+G+
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 358 FTTVRGAGHLVPTYQPQRALIMISSFLEGKLPPSS 392
+ TVRGAGHLVP ++P +A ++ FL+G+ P+
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPAE 158
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 118/214 (55%), Gaps = 17/214 (7%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+
Sbjct: 56 LNGGPGCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK 114
Query: 93 SDYSNPGDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSK 152
+N D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ +
Sbjct: 115 FYATN--DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS-- 170
Query: 153 TIINLKGIAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLS 206
+NL+G+A+GN + F + H L +S +T+ C+F +
Sbjct: 171 --MNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-D 227
Query: 207 TSCDQYQTQGVREYGQ--IDLYNVYAPLCKSSAP 238
C + R G +++YN+YAP C P
Sbjct: 228 LECVTNLQEVARIVGNSGLNIYNLYAP-CAGGVP 260
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 170/389 (43%), Gaps = 62/389 (15%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSS+ GA+ E GPFRVNSDGK LY NE +W + ++LF++ P G GFS +
Sbjct: 73 LNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVE-QN 129
Query: 93 SDYSNPGDNNTAEDS-------YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTI 145
D N ED FL N+F+ FP+ R ++GESYAG Y+P A I
Sbjct: 130 KDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAI 189
Query: 146 LSKNTSKTI----INLKGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAI----NKY 197
L+ N I +LK + IGN WID N + F L DE+N N +
Sbjct: 190 LNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKL-IDESNPNFKHLTNAH 248
Query: 198 CDFATGQLSTSCDQ-----YQ------------TQGVREYGQIDLYNVYAPLCKSSAPPP 240
+ S S D+ YQ T+ + G D N+Y K S
Sbjct: 249 ENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSY--- 305
Query: 241 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHA---KHTNWSTCSDLTWTDSPSTV-LPTI 296
P+ G+ P +V+ + + V +LH K +W C++ T + + P+I
Sbjct: 306 PSCGMNW---PKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSI 362
Query: 297 QQ---LIASGIRVWIYSGDTDGRVPVTSSRYSINALN------LPVETAWYPWYADG--- 344
L+ SGI + +++GD D +I+ L + + W
Sbjct: 363 HLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKST 422
Query: 345 ----EVGGYVLGYKGVIFTTVRGAGHLVP 369
E GYV + + F +V A H+VP
Sbjct: 423 DDSEEFSGYVKYDRNLTFVSVYNASHMVP 451
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 170/400 (42%), Gaps = 78/400 (19%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSSL G ELGP + D K + N Y+WN+ A V+FL+ P VGFSYS +S
Sbjct: 50 LNGGPGCSSLT-GLFFELGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS 107
Query: 93 SDYSNPGDNNTA---EDSYTFLVNWFERFPQYKNR--DFFITGESYAGHYVPQLAYTILS 147
G +NT +D Y FL +F++FP+Y N+ DF I GESYAGHY+P A ILS
Sbjct: 108 ------GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILS 161
Query: 148 KNTSKTIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNS--------DETNAAINKYCD 199
NL + IGN D ++++ A E +A+ +
Sbjct: 162 HKDRN--FNLTSVLIGNGLTD----PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLE 215
Query: 200 FATGQLSTSCDQYQTQGVREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSD----- 254
G L SC Y +Q V +Y C ++ P YD D
Sbjct: 216 RCLG-LIESC--YDSQSVWSCVPATIY------CNNAQLAPYQRTGRNVYDIRKDCEGGN 266
Query: 255 ------KYVNSYLNLAEVQAALHAKHTNWSTC------SDLTWTDSPSTVLPTIQQLIAS 302
+ ++ YLN V+ A+ A+ ++ +C + L D + L+
Sbjct: 267 LCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQ 326
Query: 303 GIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYAD----------------GEV 346
+ + +Y+GD D + N L T PW D EV
Sbjct: 327 DLPILVYAGDKD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV 377
Query: 347 GGYVLGYKGVIFTTVRGAGHLVPTYQPQRALIMISSFLEG 386
G V YK + V GH+VP P+ AL M++ ++ G
Sbjct: 378 AGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 168/400 (42%), Gaps = 78/400 (19%)
Query: 33 LSGGPGCSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTS 92
L+GGPGCSSL G LGP + D K + N Y+WN+ A V+FL+ P VGFSYS +S
Sbjct: 50 LNGGPGCSSLT-GLFFALGPSSIGPDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS 107
Query: 93 SDYSNPGDNNTA---EDSYTFLVNWFERFPQYKNR--DFFITGESYAGHYVPQLAYTILS 147
G +NT +D Y FL +F++FP+Y N+ DF I G SYAGHY+P A ILS
Sbjct: 108 ------GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILS 161
Query: 148 KNTSKTIINLKGIAIGNAWIDDNLCTKGMFDFFWTHALNS--------DETNAAINKYCD 199
NL + IGN D ++++ A E +A+ +
Sbjct: 162 HKDRN--FNLTSVLIGNGLTD----PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLE 215
Query: 200 FATGQLSTSCDQYQTQGVREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSD----- 254
G L SC Y +Q V +Y C ++ P YD D
Sbjct: 216 RCLG-LIESC--YDSQSVWSCVPATIY------CNNAQLAPYQRTGRNVYDIRKDCEGGN 266
Query: 255 ------KYVNSYLNLAEVQAALHAKHTNWSTC------SDLTWTDSPSTVLPTIQQLIAS 302
+ ++ YLN V+ A+ A+ ++ +C + L D + L+
Sbjct: 267 LCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQ 326
Query: 303 GIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYAD----------------GEV 346
+ + +Y+GD D + N L T PW D EV
Sbjct: 327 DLPILVYAGDKD---------FICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV 377
Query: 347 GGYVLGYKGVIFTTVRGAGHLVPTYQPQRALIMISSFLEG 386
G V YK + V GH+VP P+ AL M++ ++ G
Sbjct: 378 AGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 251 PCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTDSPSTVLPTIQQLIAS-G 303
PC++ S YLN V+ AL+ W C+ +L + ++ +L++S
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQK 63
Query: 304 IRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YADG--EVGGYVLGYKGVIF 358
++ +Y+GD D + +++LN +E PW Y D ++ G+V + + F
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAF 123
Query: 359 TTVRGAGHLVPTYQPQRALIMISSFLEGK 387
T++GAGH+VPT +P A M S FL +
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 338
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 339 P 339
P
Sbjct: 71 P 71
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 338
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 339 P 339
P
Sbjct: 71 P 71
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 338
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLATPSRAALLTGRLPVRMGMY 70
Query: 339 P 339
P
Sbjct: 71 P 71
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 338
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 339 P 339
P
Sbjct: 71 P 71
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 338
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 339 P 339
P
Sbjct: 71 P 71
>pdb|1MJT|A Chain A, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
pdb|1MJT|B Chain B, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
Length = 347
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 39/200 (19%)
Query: 165 AWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLSTSCDQYQTQGVREYGQID 224
AW + N C +F W +LN + ++ +S + TQ E G++
Sbjct: 56 AWRNSNRCIGRLF---WD-SLNVIDARDVTDE------ASFLSSITYHITQATNE-GKLK 104
Query: 225 LY-NVYAPLCKSSAPPPPTAGVIRE--YDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCS 281
Y +YAP P +IR YD C D AE + A H W
Sbjct: 105 PYITIYAP---KDGPKIFNNQLIRYAGYDNCGDP--------AEKEVTRLANHLGWKGKG 153
Query: 282 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRY-SINALNLPVETAWYPW 340
+ VLP I QL ++ + Y VP+ + Y + LNL W
Sbjct: 154 ------TNFDVLPLIYQLPNESVKFYEYPTSLIKEVPIEHNHYPKLRKLNL-------KW 200
Query: 341 YADGEVGGYVLGYKGVIFTT 360
YA + L G+++ T
Sbjct: 201 YAVPIISNMDLKIGGIVYPT 220
>pdb|1DQY|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis With Diethyl Phosphate Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 241 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 300
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 301 ASGIRVWIYSGD 312
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1DQZ|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
pdb|1DQZ|B Chain B, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
Length = 280
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 241 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 300
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 140 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 197
Query: 301 ASGIRVWIYSGD 312
A+ R+W+Y G+
Sbjct: 198 ANNTRIWVYCGN 209
>pdb|1VA5|A Chain A, Antigen 85c With Octylthioglucoside In Active Site
pdb|1VA5|B Chain B, Antigen 85c With Octylthioglucoside In Active Site
Length = 303
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 241 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 300
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 301 ASGIRVWIYSGD 312
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|3HRH|A Chain A, Crystal Structure Of Antigen 85c And Glycerol
pdb|3HRH|B Chain B, Crystal Structure Of Antigen 85c And Glycerol
Length = 303
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 241 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 300
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 301 ASGIRVWIYSGD 312
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 321 SSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTTVRGAGHLVPTY 371
+S YS A N P+E + P+ G+ GG +LG G F + G + Y
Sbjct: 5 ASEYSSEASNTPIEHQFNPY---GDNGGTILGIAGEDFAVLAGDTRNITDY 52
>pdb|1F0P|A Chain A, Mycobacterium Tuberculosis Antigen 85b With Trehalose
Length = 285
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 259 SYLNLAEVQAALHAKHTNWSTCSDLTWT-DSPSTVLPTIQQLIASGIRVWIYSGD 312
S + LA A + W SD W + P+ +P +L+A+ R+W+Y G+
Sbjct: 162 SLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIP---KLVANNTRLWVYCGN 213
>pdb|1F0N|A Chain A, Mycobacterium Tuberculosis Antigen 85b
Length = 285
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 259 SYLNLAEVQAALHAKHTNWSTCSDLTWT-DSPSTVLPTIQQLIASGIRVWIYSGD 312
S + LA A + W SD W + P+ +P +L+A+ R+W+Y G+
Sbjct: 162 SLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIP---KLVANNTRLWVYCGN 213
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 281 SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW 340
D T T+S ++P + +++ +R+W + S N+ ++ Y W
Sbjct: 343 KDNTLTESVDLLMPGVGEIVGGSMRIWKF------------DELSKAFKNVEIDPKPYYW 390
Query: 341 YADGEV------GGYVLGYKGVI 357
Y D + GGY LG + I
Sbjct: 391 YLDQRLYGTCPHGGYGLGLERFI 413
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 281 SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW 340
D T T+S ++P + +++ +R+W + S N+ ++ Y W
Sbjct: 341 QDNTLTESVDLLMPGVGEIVGGSMRIWKF------------DELSKAFKNVEIDPKPYYW 388
Query: 341 YADGEV------GGYVLGYKGVI 357
Y D + GGY LG + I
Sbjct: 389 YLDQRLYGTCPHGGYGLGLERFI 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,474,824
Number of Sequences: 62578
Number of extensions: 614103
Number of successful extensions: 1303
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 48
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)