BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016293
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 152/328 (46%), Gaps = 46/328 (14%)
Query: 66 ASASAQPLKNA--DELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 123
A A + L+ A +++ + +FDCDGV+W G++ + G PE L+ L GK +FV+N
Sbjct: 2 AMARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSN 61
Query: 124 NSTKSRKQYGKKFETLGLTVTEVKDSFLSIVC---LKFHRIPSPNXXXXXXXXXXXXXXX 180
NS ++R + +F LG + F S +C L R+P P
Sbjct: 62 NSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPP--------------- 106
Query: 181 XXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDV 240
D P V+V+G +G+ EL AG + G P G V
Sbjct: 107 --------DAPG--AVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRV 145
Query: 241 GAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG 300
AV+VG+D +F++ K++ +R +P CL +AT+RD L+D G GS+ A
Sbjct: 146 RAVLVGYDEHFSFAKLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVET 204
Query: 301 STQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXX 360
++ R+ LVVGKPS +M + + F I ++ MVGDRL+TDILFG G
Sbjct: 205 ASGRQALVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVS 264
Query: 361 XXXXXQ----SPNNSIQPDFYTNKISDF 384
Q + + + P +Y I+D
Sbjct: 265 RLEEAQAYLAAGQHDLVPHYYVESIADL 292
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 150/328 (45%), Gaps = 46/328 (14%)
Query: 66 ASASAQPLKNA--DELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTN 123
A A + L+ A +++ + +FDCDGV+W G++ + G PE L+ L GK +FV+N
Sbjct: 2 AXARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSN 61
Query: 124 NSTKSRKQYGKKFETLGLTVTEVKDSFLSIVC---LKFHRIPSPNXXXXXXXXXXXXXXX 180
NS ++R + +F LG + F S +C L R+P P
Sbjct: 62 NSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPP--------------- 106
Query: 181 XXXYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDV 240
D P V+V+G +G+ EL AG + G P G V
Sbjct: 107 --------DAPG--AVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRV 145
Query: 241 GAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG 300
AV+VG+D +F++ K++ +R +P CL +AT+RD L+D G GS+ A
Sbjct: 146 RAVLVGYDEHFSFAKLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVET 204
Query: 301 STQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXX 360
++ R+ LVVGKPS + + + F I ++ VGDRL+TDILFG G
Sbjct: 205 ASGRQALVVGKPSPYXFECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLTLTGVS 264
Query: 361 XXXXXQ----SPNNSIQPDFYTNKISDF 384
Q + + + P +Y I+D
Sbjct: 265 RLEEAQAYLAAGQHDLVPHYYVESIADL 292
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 144/314 (45%), Gaps = 44/314 (14%)
Query: 78 ELIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFE 137
+++ + +FDCDGV+W G++ + G PE L+ L GK +FV+NNS ++R + +F
Sbjct: 16 DVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFA 75
Query: 138 TLGLTVTEVKDSFLSIVC---LKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDK 194
LG + F S +C L R+P P D P
Sbjct: 76 RLGFGGLRAEQLFSSALCAARLLRQRLPGPP-----------------------DAPG-- 110
Query: 195 KVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYY 254
V+V+G +G+ EL AG + G P G V AV+VG+D +F++
Sbjct: 111 AVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFSFA 159
Query: 255 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPST 314
K++ +R +P CL +AT+RD L+D G GS+ A ++ R+ LVVGKPS
Sbjct: 160 KLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSP 218
Query: 315 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQ----SPNN 370
+ + + F I ++ VGDRL+TDILFG G Q + +
Sbjct: 219 YXFECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLTLTGVSRLEEAQAYLAAGQH 278
Query: 371 SIQPDFYTNKISDF 384
+ P +Y I+D
Sbjct: 279 DLVPHYYVESIADL 292
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 130/269 (48%), Gaps = 50/269 (18%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
IFD DGV+++G++ I GV E ++ L+ +G F+TNNSTK+ + Y +K +G+ V+
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSS 63
Query: 146 ---VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGED 202
+ + + + H P K++V+G +
Sbjct: 64 SIIITSGLATRLYMSKHLDPG-------------------------------KIFVIGGE 92
Query: 203 GILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLC 262
G++KE++ G+ + E + G K+V VVVG D Y K++Y TL
Sbjct: 93 GLVKEMQALGWGIV-------TLDEARQGSW----KEVKHVVVGLDPDLTYEKLKYATLA 141
Query: 263 IRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLAN 322
IR G FI TN DA T + + G GS++ A +T EP+++GKP+ M + +
Sbjct: 142 IRN--GATFIGTNPDA-TLPGEEGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVRE 198
Query: 323 KFGIQKSQICMVGDRLDTDILFGQNGGCK 351
F ++ MVGDRLDTDI F + G K
Sbjct: 199 MF--PGEELWMVGDRLDTDIAFAKKFGMK 225
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 112/264 (42%), Gaps = 51/264 (19%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG ++ G + I+ E + L+ +G +FVTNNS+++ KQ K + + TE
Sbjct: 9 YLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATE 68
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGEDGIL 205
+ F + + H KD VYV+GE+GI
Sbjct: 69 -EQVFTTSMATAQHIAQQK---------------------------KDASVYVIGEEGIR 100
Query: 206 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRE 265
+ +E G + GG+ + VVVG DR Y K G L IR
Sbjct: 101 QAIEENGLTF------GGENADF--------------VVVGIDRSITYEKFAVGCLAIRN 140
Query: 266 NPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 325
G FI+TN D + T+ G GS+ ST +P+ +GKP + +M+ G
Sbjct: 141 --GARFISTNGD-IAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLG 197
Query: 326 IQKSQICMVGDRLDTDILFGQNGG 349
S+ MVGD TDI+ G N G
Sbjct: 198 TDVSETLMVGDNYATDIMAGINAG 221
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 55/305 (18%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
+I D DGVI K I E + L+ GK+++FV+NNST+SR+ ++ + GL V E
Sbjct: 11 YIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGE 70
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGEDGIL 205
+ + +F PN KV+ GE+G++
Sbjct: 71 DEILVATYATARFIAREKPNA----------------------------KVFTTGEEGLI 102
Query: 206 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNY-YKVQYGTLCIR 264
+EL LAG + ++++D + +VVG +R N+ + C+R
Sbjct: 103 EELRLAGLE------------------IVDYD-EAEYLVVGSNRKINFELXTKALRACLR 143
Query: 265 ENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANK 323
G +IATN D + D G G ++GA T REP +VVGKPS + +
Sbjct: 144 ---GIRYIATNPDRIFPAEDGP-IPGTGXIIGALYWXTGREPDVVVGKPSEVIXREALDI 199
Query: 324 FGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQS--PNNSIQPDFYTNKI 381
G+ + +VGD++D D+ G+ G + + ++PD+ N +
Sbjct: 200 LGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQXIERHGLKPDYVFNSL 259
Query: 382 SDFLS 386
D +
Sbjct: 260 KDXVE 264
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 58/275 (21%)
Query: 79 LIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 138
++D +E FI D DG + D L+ G E L+ L+ K KR VF TNNS+ + Y +K
Sbjct: 13 VLDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRN 72
Query: 139 LGLTVTEVKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYV 198
G +D P D V
Sbjct: 73 XG-----------------------------------------------VDVPDDA-VVT 84
Query: 199 VGE---DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYK 255
GE + LK LG P+ KK+ G +++ +++ VV+GFD+ Y +
Sbjct: 85 SGEITAEHXLKRFGRCRIFLLGTPQ--LKKVFEAYGHVID-EENPDFVVLGFDKTLTYER 141
Query: 256 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPST 314
++ + +R+ G +IAT+ D + + GS+ A ST R+P L+ GKP+
Sbjct: 142 LKKACILLRK--GKFYIATHPD-INCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPNP 198
Query: 315 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 349
++D ++ KFG+ K + VGDRL TD+ G+N G
Sbjct: 199 LVVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAG 233
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 58/274 (21%)
Query: 80 IDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETL 139
+D +E FI D DG + D L+ G E L+ L+ K KR VF TNNS+ + Y +K
Sbjct: 2 LDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNX 61
Query: 140 GLTVTEVKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVV 199
G +D P D V
Sbjct: 62 G-----------------------------------------------VDVPDDA-VVTS 73
Query: 200 GE---DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV 256
GE + LK LG P+ KK+ G +++ +++ VV+GFD+ Y ++
Sbjct: 74 GEITAEHXLKRFGRCRIFLLGTPQ--LKKVFEAYGHVID-EENPDFVVLGFDKTLTYERL 130
Query: 257 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTF 315
+ + +R+ G +IAT+ D + + GS+ A ST R+P L+ GKP+
Sbjct: 131 KKACILLRK--GKFYIATHPD-INCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPNPL 187
Query: 316 MMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 349
++D ++ KFG+ K + VGDRL TD+ G+N G
Sbjct: 188 VVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAG 221
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 59/268 (22%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I+ G + I ++ L+ K +FVTNN+TKS + ++
Sbjct: 8 YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRL--------- 58
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKD----KKVYVVGE 201
+ F H +P+ L +ID+ K+ KKV+V+GE
Sbjct: 59 -ANEF------DIH-VPA--------------SLVYTATLATIDYMKEANRGKKVFVIGE 96
Query: 202 DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTL 261
G++ + AGF++ E P + VVVG D +Y KV TL
Sbjct: 97 AGLIDLILEAGFEW----------DETNPDY----------VVVGLDTELSYEKVVLATL 136
Query: 262 CIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLA 321
I++ G LFI TN D T+ G GS+V +TQ +P+ +GKP +M+
Sbjct: 137 AIQK--GALFIGTNPDKNIP-TERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAI 193
Query: 322 NKFGIQKSQICMVGDRLDTDILFG-QNG 348
G++K Q+ MVGD +TDI G QNG
Sbjct: 194 AHLGVEKEQVIMVGDNYETDIQSGIQNG 221
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 52/299 (17%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I+KG I + + L+ + + VTNN+T++ + + + T
Sbjct: 6 YLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEM----VQEMLATSFN 61
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGEDGIL 205
+K +I I N D + K YV+GE G+
Sbjct: 62 IKTPLETIYTATLATIDYMN-----------------------DMKRGKTAYVIGETGLK 98
Query: 206 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRE 265
K + AG++ E ++ VVVG D Y K+ TL I++
Sbjct: 99 KAVAEAGYR--------------------EDSENPAYVVVGLDTNLTYEKLTLATLAIQK 138
Query: 266 NPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 325
G +FI TN D + T+ G G+++ +T+ +P+++GKP +M+ ++ G
Sbjct: 139 --GAVFIGTNPD-LNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLG 195
Query: 326 IQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQSPNNSIQPDFYTNKISDF 384
+++ + MVGD TDI G + P IQPDF + ++++
Sbjct: 196 VKRHEAIMVGDNYLTDITAGIKNDI--ATLLVTTGFTKPEEVPALPIQPDFVLSSLAEW 252
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 107/262 (40%), Gaps = 51/262 (19%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I+KG I ++ L+ KG + VTNN+T++ + +
Sbjct: 8 YLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGF-----N 62
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGEDGIL 205
V+ +I + N D + K YV+GE+G+
Sbjct: 63 VETPLETIYTATMATVDYMN-----------------------DMNRGKTAYVIGEEGLK 99
Query: 206 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRE 265
K + AG+ +E K+ VVVG D Y K+ TL I+
Sbjct: 100 KAIADAGY--------------------VEDTKNPAYVVVGLDWNVTYDKLATATLAIQN 139
Query: 266 NPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 325
G LFI TN D + T+ G GS+ +T+ +P+ +GKP+ +M+
Sbjct: 140 --GALFIGTNPD-LNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILN 196
Query: 326 IQKSQICMVGDRLDTDILFGQN 347
I ++Q MVGD TDI+ G N
Sbjct: 197 IPRNQAVMVGDNYLTDIMAGIN 218
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 54/300 (18%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I++G I + L+ +G + VTNN+T++
Sbjct: 6 YLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRT----------------- 48
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGEDGIL 205
+ S++ +FH Y+ D + K YV+GE G+
Sbjct: 49 -PEMVQSMLANQFH-------VETSIETIYTATMATVDYMN--DMNRGKTAYVIGETGLK 98
Query: 206 KELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRE 265
+ AG+ +E ++ VVVG D Y + TL I++
Sbjct: 99 SAIAAAGY--------------------VEELENPAYVVVGLDSQVTYEMLAIATLAIQK 138
Query: 266 NPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 325
G LFI TN D + T+ G G++ +T+ +P+ +GKP+ +M+ G
Sbjct: 139 --GALFIGTNPD-LNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLG 195
Query: 326 IQKSQICMVGDRLDTDILFG-QNGGCKXXXXXXXXXXXXXXQSPNNSIQPDFYTNKISDF 384
IQ+S+ MVGD TDI+ G QN + P IQPD + + ++
Sbjct: 196 IQRSEAVMVGDNYLTDIMAGIQN---DIATILVTTGFTRPEEVPTLPIQPDHVLSSLDEW 252
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 117/269 (43%), Gaps = 58/269 (21%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE 145
++ D DG I+KG I + L+ + +FVTNN+T++
Sbjct: 6 YLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRT----------------- 48
Query: 146 VKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKD----KKVYVVGE 201
+S ++ F+ I +P L +ID+ D K VYVVGE
Sbjct: 49 -PESVKEMLAQNFN-IDTP------------LSTVYTATLATIDYMNDLGLEKTVYVVGE 94
Query: 202 DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTL 261
G+ + ++ AG+ ED + KP + VVVG D +Y K TL
Sbjct: 95 AGLKEAIKAAGYV-----ED-----KEKPAY----------VVVGLDWQVDYEKFATATL 134
Query: 262 CIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLA 321
I++ G FI TN D + T+ G GS++ +T+ +P+ +GKP+ +MD
Sbjct: 135 AIQK--GAHFIGTNPD-LNIPTERGLLPGAGSLITLLEVATRVKPVYIGKPNAIIMDKAV 191
Query: 322 NKFGIQKSQICMVGDRLDTDILFGQNGGC 350
G+++ ++ MVGD TDI G + G
Sbjct: 192 EHLGLEREELIMVGDNYLTDIRAGIDNGI 220
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 108/270 (40%), Gaps = 55/270 (20%)
Query: 82 SVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 141
+++ I D DGV+ + + G E L + KG LV +TN +++ + +F T G+
Sbjct: 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61
Query: 142 TVTEVKDSFLSIVCLKFHRIPSPNXXXXXXXXXXXXXXXXXXYLKSIDFPKDKKVYVVGE 201
+V DS + +L+ + KK YVVGE
Sbjct: 62 ---DVPDSVFYTSAMA-----------------------TADFLRR---QEGKKAYVVGE 92
Query: 202 DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTL 261
++ EL AGF ++ P F V+VG R +N+ +
Sbjct: 93 GALIHELYKAGFTI----------TDVNPDF----------VIVGETRSYNWDMMHKAAY 132
Query: 262 CIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLA 321
+ G FIATN D TH + G++ + R+P VGKPS +++
Sbjct: 133 FVAN--GARFIATNPD--TH--GRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAAL 186
Query: 322 NKFGIQKSQICMVGDRLDTDILFGQNGGCK 351
NK + +VGD L TDIL G G +
Sbjct: 187 NKMQAHSEETVIVGDNLRTDILAGFQAGLE 216
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 270 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 329
L + TN D T + A VG QRE KP+ + Y N G+Q
Sbjct: 149 LLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREE----KPAPSIFYYCCNLLGVQPG 204
Query: 330 QICMVGDRLDTDILFGQNGGCK 351
MVGD L+TDI G N G K
Sbjct: 205 DCVMVGDTLETDIQGGLNAGLK 226
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 79 LIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFET 138
L+ + FD GV+ + L+ G+ T D L+++G+ VTN++++S +Q +
Sbjct: 10 LLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHK 69
Query: 139 LGL 141
LGL
Sbjct: 70 LGL 72
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 239 DVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAF 298
+V A+V+ D FN++ T+ + I N D LT G +
Sbjct: 132 EVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATXI 191
Query: 299 VGSTQREPLVVGKPST----FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 350
R + GKP + F D L K I K +I VGD L TDIL G G
Sbjct: 192 ESILGRRFIRFGKPDSQXFXFAYDXLRQKXEISKREILXVGDTLHTDILGGNKFGL 247
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 270 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 329
L + TN D T + A +G Q+E KP+ + + + G+Q
Sbjct: 139 LLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEE----KPAPSIFYHCCDLLGVQPG 194
Query: 330 QICMVGDRLDTDILFGQNGGCK 351
MVGD L+TDI G N G K
Sbjct: 195 DCVMVGDTLETDIQGGLNAGLK 216
>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
Length = 189
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 298 FVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 350
+ +++ +P + KP + D+ N I K++ MVG+ ++DI+ G
Sbjct: 84 YASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGI 136
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 303 QREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 350
Q P + P+ F YL KFG+ QI VGD DI + GC
Sbjct: 164 QSLPEIKPHPAPFY--YLCGKFGLYPKQILFVGDS-QNDIFAAHSAGC 208
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN---STKSRKQY 132
F FD DGV+++G K I G + L +L + +TN S ++R ++
Sbjct: 16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEF 65
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 309 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 351
V KPS YL +K+ + +GDR D+ F QN G +
Sbjct: 138 VRKPSPEAATYLLDKYQLNSDNTYYIGDRT-LDVEFAQNSGIQ 179
>pdb|3L8E|A Chain A, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
pdb|3L8E|B Chain B, Crystal Structure Of Apo Form Of D,D-Heptose 1.7-
Bisphosphate Phosphatase From E. Coli
Length = 187
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 99 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK-KFETL 139
+ IDGV + + L+ G LV VTN S +R ++ + +FETL
Sbjct: 30 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETL 71
>pdb|2GMW|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|2GMW|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From E. Coli.
pdb|3ESQ|A Chain A, Crystal Structure Of Calcium-Bound D,D-Heptose
1.7-Bisphosphate Phosphatase From E. Coli
pdb|3ESR|A Chain A, Crystal Structure Of D,D-Heptose1.7-Bisphosphate
Phosphatase From E. Coli In Complex With Calcium And
Phosphate
pdb|3L1U|A Chain A, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1U|B Chain B, Crystal Structure Of Calcium-Bound Gmhb From E. Coli.
pdb|3L1V|A Chain A, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate.
pdb|3L1V|B Chain B, Crystal Structure Of Gmhb From E. Coli In Complex With
Calcium And Phosphate
Length = 211
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 99 KLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGK-KFETL 139
+ IDGV + + L+ G LV VTN S +R ++ + +FETL
Sbjct: 50 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETL 91
>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 115
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 93 VIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRK---QYGKKFETLGLTVTEVKDS 149
++ K K + G +TL M+R +LV + NN RK +Y G+ +
Sbjct: 20 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNI 79
Query: 150 FLSIVCLKFHRI 161
L C K++R+
Sbjct: 80 ELGTACGKYYRV 91
>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e
Length = 125
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 93 VIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRK---QYGKKFETLGLTVTEVKDS 149
++ K K + G +TL M+R +LV + NN RK +Y G+ +
Sbjct: 21 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNI 80
Query: 150 FLSIVCLKFHRI 161
L C K++R+
Sbjct: 81 ELGTACGKYYRV 92
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 230 PGFLMEHDKDVGAVVVGF-DRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEW 288
P F D AVV+G +F+Y + + + G IA ++ D
Sbjct: 100 PDFKGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLD--GAPLIAIHKARYYKRKDGLAL 157
Query: 289 AGGGSMVGAFVGSTQREPLVVGKPS-TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 347
G G V A +T + VVGKP TF ++ L G + + M+GD D+ Q+
Sbjct: 158 -GPGPFVTALEYATDTKATVVGKPEKTFFLEALRGT-GCEPEEAVMIGDDCRDDVGGAQD 215
Query: 348 GG 349
G
Sbjct: 216 VG 217
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 318 DYLANKFGIQKSQICMVGDRLDTDI 342
DY+ + FG + ++ C+ DRLDT++
Sbjct: 300 DYVGHTFGTEGTESCIQVDRLDTEL 324
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 86 FIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNN---STKSRKQY 132
F F DGV+++G K I G + L +L + +TN S ++R ++
Sbjct: 19 FAFAIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEF 68
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEVKDS 149
DKLI GVPE D+ +G++++ + + S + LG V E+ DS
Sbjct: 35 DKLIAGVPELADLANVRGEQVMQIASESITN-----DDLLKLGKRVAELADS 81
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEVKDS 149
DKLI GVPE D+ +G++++ + + S + LG V E+ DS
Sbjct: 42 DKLIAGVPELADLANVRGEQVMQIASESITN-----DDLLKLGKRVAELADS 88
>pdb|3PGA|1 Chain 1, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|2 Chain 2, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|3 Chain 3, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|4 Chain 4, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
Length = 337
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 DKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEVKDS 149
DKLI GVPE D+ +G++++ + + S + LG V E+ DS
Sbjct: 42 DKLIAGVPELADLANVRGEQVMQIASESITN-----DDLLKLGKRVAELADS 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,889,846
Number of Sequences: 62578
Number of extensions: 444860
Number of successful extensions: 951
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 54
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)