BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016295
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/304 (62%), Positives = 236/304 (77%)
Query: 60 VSGVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS 119
+SG + + DI+ LKN+M+AQYFGEIG+G+PPQ F+VIFDTGSSNLWVPS+KCYFS
Sbjct: 29 LSGANPLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFS 88
Query: 120 ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATRE 179
I+CY HSRYK+ S+TY + GK I YG+GSI+G+FS+ FIEAT+E
Sbjct: 89 IACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKE 148
Query: 180 GSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI 239
+TFL+A+FDGI+GLGF+EI+VG AVPVW M+EQGLVS+ VFSFWLNR D EGGEI
Sbjct: 149 PGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEI 208
Query: 240 VFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP 299
+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI DSGTSLLAGP
Sbjct: 209 IFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGP 268
Query: 300 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYV 359
T ++TEIN IG GVVS ECK +VSQYG I DLL++ P+K+C Q+GLC F+G V
Sbjct: 269 TAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGV 328
Query: 360 RLGI 363
GI
Sbjct: 329 SAGI 332
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/238 (60%), Positives = 168/238 (70%), Gaps = 4/238 (1%)
Query: 74 ILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKS 133
++ L N D YFGEIGIG+PPQ F+VIFDTGSS LWVPSSKC S +C HS Y+S S
Sbjct: 4 VVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDS 63
Query: 134 NTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGII 193
+TY E G I YG+GSI+GFFSQ FIEAT E FL FDGI+
Sbjct: 64 STYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGIL 123
Query: 194 GLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKH 253
GL F+ I+V PVW NM+ QGLV E FSFWLNR+ D EEGGE+VFGG+DP HF+G H
Sbjct: 124 GLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDH 179
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 311
TYVPVT + YWQF +GD+LIG++STG C GC A DSGTSLL+GPT +VT+INHAIG
Sbjct: 180 TYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIG 237
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 157/248 (63%), Gaps = 5/248 (2%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL N++D +YFG I IGSPPQNF+VIFDTGSSNLWVPS C S +C HSR++ +S+T
Sbjct: 16 PLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSST 74
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
Y++ G+S I YG+GS+SG F E+ E TF+ A FDGI+GL
Sbjct: 75 YSQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGL 134
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 255
G+ +AVG PV+DNM+ Q LV +FS +++ +P+ G E++FGG D HF G +
Sbjct: 135 GYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNW 194
Query: 256 VPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG--- 312
VPVTK+ YWQ L +I +G + C GC AIVD+GTSL+ GP+ + ++ +AIG
Sbjct: 195 VPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV 253
Query: 313 EGVVSAEC 320
+G + EC
Sbjct: 254 DGEYAVEC 261
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 162/253 (64%), Gaps = 6/253 (2%)
Query: 64 RHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISC 122
R LG++ ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C
Sbjct: 43 RLTLGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 101
Query: 123 YFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL 182
+H + + S++Y G + Y +G++SGF SQ F E T +L
Sbjct: 102 VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPAL 160
Query: 183 TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIV 240
F+LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV
Sbjct: 161 PFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIV 220
Query: 241 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T
Sbjct: 221 LGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGST 279
Query: 301 PVVTEINHAIGGE 313
+ ++ A+G +
Sbjct: 280 SSIEKLMEALGAK 292
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 161/250 (64%), Gaps = 6/250 (2%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFH 125
LG++ ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H
Sbjct: 3 LGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH 61
Query: 126 SRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFL 185
+ + S++Y G + Y +G++SGF SQ F E T +L F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFM 120
Query: 186 LARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGG 243
LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV GG
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 244 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 303
DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T +
Sbjct: 181 SDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSI 239
Query: 304 TEINHAIGGE 313
++ A+G +
Sbjct: 240 EKLMEALGAK 249
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 161/250 (64%), Gaps = 6/250 (2%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFH 125
LG++ ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H
Sbjct: 3 LGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH 61
Query: 126 SRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFL 185
+ + S++Y G + Y +G++SGF SQ F E T +L F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFM 120
Query: 186 LARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGG 243
LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV GG
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 244 VDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 303
DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T +
Sbjct: 181 SDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSI 239
Query: 304 TEINHAIGGE 313
++ A+G +
Sbjct: 240 EKLMEALGAK 249
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 155/240 (64%), Gaps = 5/240 (2%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNT 135
L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H + + S++
Sbjct: 8 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 67
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
Y G + Y +G++SGF SQ F E T +L F+LA FDG++G+
Sbjct: 68 YKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGM 126
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKH 253
GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV GG DP+H++G
Sbjct: 127 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNF 186
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T + ++ A+G +
Sbjct: 187 HYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 245
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 155/240 (64%), Gaps = 5/240 (2%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNT 135
L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H + + S++
Sbjct: 5 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 64
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
Y G + Y +G++SGF SQ F E T +L F+LA FDG++G+
Sbjct: 65 YKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGM 123
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKH 253
GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV GG DP+H++G
Sbjct: 124 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNF 183
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T + ++ A+G +
Sbjct: 184 HYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 242
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 155/240 (64%), Gaps = 5/240 (2%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNT 135
L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H + + S++
Sbjct: 9 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSS 68
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
Y G + Y +G++SGF SQ F E T +L F+LA FDG++G+
Sbjct: 69 YKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGM 127
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKH 253
GF E A+G P++DN++ QG++ E+VFSF+ NRD + + GG+IV GG DP+H++G
Sbjct: 128 GFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNF 187
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T + ++ A+G +
Sbjct: 188 HYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAK 246
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 159/248 (64%), Gaps = 7/248 (2%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFH 125
LG++ ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H
Sbjct: 3 LGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH 61
Query: 126 SRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFL 185
+ + S++Y G + Y +G++SGF SQ F E T +L F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFM 120
Query: 186 LARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVD 245
LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+ NRD GG+IV GG D
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD---SLGGQIVLGGSD 177
Query: 246 PKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTE 305
P+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S ++G T + +
Sbjct: 178 PQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASYISGSTSSIEK 236
Query: 306 INHAIGGE 313
+ A+G +
Sbjct: 237 LMEALGAK 244
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 154/238 (64%), Gaps = 4/238 (1%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNT 135
L N++++QY+GEIGIG+PPQ F VIFDTGS+NLWVPS+KC ++C HS Y+S S++
Sbjct: 9 LTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSS 68
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
Y E G I+YGSG + GF SQ F E T+ + F+LA+FDG++G+
Sbjct: 69 YMENGDDFTIHYGSGRVKGFLSQ-DSVTVGGITVTQTFGEVTQLPLIPFMLAQFDGVLGM 127
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 255
GF AVG PV+D+++ QG++ E+VFS + NR P GGE+V GG DP+H++G Y
Sbjct: 128 GFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHL-LGGEVVLGGSDPQHYQGDFHY 186
Query: 256 VPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
V ++K WQ + + +G+ ST +CE GC +VD+G+S ++ PT + I A+G +
Sbjct: 187 VSLSKTDSWQITMKGVSVGS-STLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAK 243
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+PL N+++AQY+ +I +G+PPQNF VI DTGSSNLWVPS++C S++C+ HS+Y S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
+Y G I YG+GS+ G+ SQ F EAT E LTF +FDGI+G
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKH 253
LG+ I+V VP + N ++Q L+ E+ F+F+L + D E GGE FGG+D FKG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
T++PV +K YW+ + I +G++ + G A +D+GTSL+ P+ + IN IG +
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+PL N+++AQY+ +I +G+PPQNF VI DTGSSNLWVPS++C S++C+ HS+Y S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
+Y G I YG+GS+ G+ SQ F EAT E LTF +FDGI+G
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKH 253
LG+ I+V VP + N ++Q L+ E+ F+F+L + D E GGE FGG+D FKG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
T++PV +K YW+ + I +G++ + G A +D+GTSL+ P+ + IN IG +
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 4/240 (1%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+PL N+++AQY+ +I +G+PPQNF VI DTGSSNLWVPS++C S++C+ HS+Y S+
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASS 63
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
+Y G I YG+GS+ G+ SQ F EAT E LTF +FDGI+G
Sbjct: 64 SYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 123
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NRDPDAEEGGEIVFGGVDPKHFKGKH 253
LG+ I+V VP + N ++Q L+ E+ F+F+L + D E GGE FGG+D FKG
Sbjct: 124 LGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDI 183
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
T++PV +K YW+ + I +G++ + G A +D+GTSL+ P+ + IN IG +
Sbjct: 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--IDTGTSLITLPSGLAEMINAEIGAK 241
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 2/234 (0%)
Query: 80 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEI 139
+MDA YFGEI IG+PPQNF V+FDTGSSNLWVPS C S +C HSR+ +S+TY+
Sbjct: 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTN 67
Query: 140 GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFRE 199
G++ + YGSGS++GFF F + E F+ A+FDGI+GL +
Sbjct: 68 GQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPA 127
Query: 200 IAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT 259
++V +A MV++G ++ VFS +L+ GG +VFGGVD + G+ + PVT
Sbjct: 128 LSVDEATTAMQGMVQEGALTSPVFSVYLSNQ-QGSSGGAVVFGGVDSSLYTGQIYWAPVT 186
Query: 260 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
++ YWQ + + LIG Q++G C GC AIVD+GTSLL P ++ + A G +
Sbjct: 187 QELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 10/258 (3%)
Query: 73 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRK 132
D PL+N++D +YFG IGIG+P Q+F+V+FDTGSSNLWVPS C S++C H+R+
Sbjct: 2 DEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPED 60
Query: 133 SNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDG 191
S+TY ++ I YG+GS++G F + T GS + A FDG
Sbjct: 61 SSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDG 119
Query: 192 IIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
I+GL + I+ A PV+DN+ QGLVS+++FS +L+ D + G ++FGG+D ++ G
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA--DDQSGSVVIFGGIDSSYYTG 177
Query: 252 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 311
+VPVT +GYWQ + I + ++ C GC AIVD+GTSLL GPT + I IG
Sbjct: 178 SLNWVPVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIG 236
Query: 312 G----EGVVSAECKLVVS 325
+G + C + S
Sbjct: 237 ASENSDGDMVVSCSAISS 254
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 10/258 (3%)
Query: 73 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRK 132
D PL+N++D +YFG IGIG+P Q+F+V+FDTGSSNLWVPS C S++C H+R+
Sbjct: 2 DEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS-SLACTNHNRFNPED 60
Query: 133 SNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDG 191
S+TY ++ I YG+GS++G F + T GS + A FDG
Sbjct: 61 SSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDG 119
Query: 192 IIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
I+GL + I+ A PV+DN+ QGLVS+++FS +L+ D + G ++FGG+D ++ G
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA--DDQSGSVVIFGGIDSSYYTG 177
Query: 252 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 311
+VPVT +GYWQ + I + ++ C GC AIVD+GTSLL GPT + I IG
Sbjct: 178 SLNWVPVTVEGYWQITVDSITMNGEAIA-CAEGCQAIVDTGTSLLTGPTSPIANIQSDIG 236
Query: 312 G----EGVVSAECKLVVS 325
+G + C + S
Sbjct: 237 ASENSDGDMVVSCSAISS 254
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 49 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 107
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 108 FEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 166
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 167 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 224
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 225 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 283
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 284 NSDGEMVIS 292
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 153/257 (59%), Gaps = 14/257 (5%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 5 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 64 FEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYY-APFDGILG 122
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 123 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 180
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 181 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 239
Query: 312 ---GEGVVSAECKLVVS 325
GE V+S C + S
Sbjct: 240 NSDGEMVIS--CSSIAS 254
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 49 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 107
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 108 FEATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 166
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 167 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 224
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 225 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 283
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 284 NSDGEMVIS 292
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 5 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 64 FEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 122
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 123 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 180
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 181 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 239
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 240 NSDGEMVIS 248
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 5 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 64 FEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 122
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 123 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 180
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 181 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 239
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 240 NSDGEMVIS 248
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 5 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 64 FEATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 122
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 123 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 180
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 181 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 239
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 240 NSDGEMVIS 248
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 150/249 (60%), Gaps = 12/249 (4%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL+N++D +YFG IGIG+P Q+F+VIFDTGSSNLWVPS C S++C H+++ S+T
Sbjct: 5 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS-SLACSDHNQFNPDDSST 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXF-IEATREGSLTFLLARFDGIIG 194
+ + I YG+GS++G F + T GS + A FDGI+G
Sbjct: 64 FEATXQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLY-YAPFDGILG 122
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
L + I+ A PV+DN+ +QGLVS+++FS +L+ + D+ G ++ GG+D ++ G
Sbjct: 123 LAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS--GSVVLLGGIDSSYYTGSLN 180
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG--- 311
+VPV+ +GYWQ L I + + T C GGC AIVD+GTSLL GPT + I IG
Sbjct: 181 WVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE 239
Query: 312 ---GEGVVS 317
GE V+S
Sbjct: 240 NSDGEMVIS 248
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 146/237 (61%), Gaps = 5/237 (2%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
PL +++D+QYFG+I IG+PPQ F+V+FDTGSS+LWVPS C ++ C H R+ RKS+T
Sbjct: 4 PLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNV-CKNHHRFDPRKSST 62
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
+ +GK I+YG+GS+ GF +T + F + FDGI+GL
Sbjct: 63 FRNLGKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGL 122
Query: 196 GFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTY 255
+ +A +VPV+DNM+++ LV+ ++FS +++R+ +G + G +DP ++ G +
Sbjct: 123 AYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQGSMLTLGAIDPSYYTGSLHW 179
Query: 256 VPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 312
VPVT + YWQF + + I N C GGC AI+D+GTS+L GP+ + +I AIG
Sbjct: 180 VPVTLQQYWQFTVDSVTI-NGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGA 235
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 143/238 (60%), Gaps = 5/238 (2%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+PL N++D+QYFG+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ RKS+
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
T+ +GK I+YG+GS+ G +T+E F A FDGI+G
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 124
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
+ + +A ++PV+DNM+ + LV++++FS +++R+ + + G +DP ++ G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLH 181
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 312
+VPVT + YWQF + + I CEGGC AI+D+GTS L GP+ + I AIG
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGA 238
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 143/238 (60%), Gaps = 5/238 (2%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+PL N++D+QYFG+I +G+PPQ F+V+FDTGSS+ WVPS C S +C H R+ RKS+
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSS 64
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
T+ +GK I+YG+GS+ G +T+E F A FDGI+G
Sbjct: 65 TFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILG 124
Query: 195 LGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
+ + +A ++PV+DNM+ + LV++++FS +++R+ + + G +DP ++ G
Sbjct: 125 MAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQESMLTLGAIDPSYYTGSLH 181
Query: 255 YVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 312
+VPVT + YWQF + + I CEGGC AI+D+GTS L GP+ + I AIG
Sbjct: 182 WVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGA 238
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 142/252 (56%), Gaps = 8/252 (3%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTY 136
+KN D +Y+G I IG+PP++F VIFDTGSSNLWV SS C + +C H+++K R+S+TY
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTY 64
Query: 137 TEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLG 196
E GK+ ++ YG+G + G Q E+ E A FDGI+GL
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 197 FREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYV 256
+ IA AVPV+DNM Q LV +++FSF+L+ G E++ GGVD H+ G ++
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDNSHYTGSIHWI 182
Query: 257 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---E 313
PVT + YWQ L I + Q T CE GC AIVD+GTS + P + I IG +
Sbjct: 183 PVTAEKYWQVALDGITVNGQ-TAACE-GCQAIVDTGTSKIVAPVSALANIMKDIGASENQ 240
Query: 314 GVVSAECKLVVS 325
G + C V S
Sbjct: 241 GEMMGNCASVQS 252
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 3/165 (1%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFH 125
LG++ ++ L N+MD QY+GEIGIG+PPQ F V+FDTGSSN+WVPSSKC +C +H
Sbjct: 3 LGNTTSSVI-LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH 61
Query: 126 SRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFL 185
+ + S++Y G + Y +G++SGF SQ F E T +L F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQ-DIITVGGITVTQMFGEVTEMPALPFM 120
Query: 186 LARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 230
LA FDG++G+GF E A+G P++DN++ QG++ E+VFSF+ NRD
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 173 FIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPD 232
F EAT++ +TF+ A+FDGI+G+ + I+V + +PV+DN+++Q LV + +FSF+L+RDPD
Sbjct: 10 FGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPD 69
Query: 233 AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSG 292
A+ GGE++ GG D K++KG +Y+ VT+K YWQ L + + + T +C+ GC AIVD+G
Sbjct: 70 AQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTG 128
Query: 293 TSLLAGPTPVVTEINHAIGGEGVVSAE 319
TSL+ GP V E+ AIG ++ E
Sbjct: 129 TSLMVGPVDEVRELQKAIGAVPLIQGE 155
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 11/230 (4%)
Query: 73 DILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRK 132
D + L + + Y+GE IG Q F+ IFDTGS+NLWVPS++C +I C + Y S K
Sbjct: 11 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNK 69
Query: 133 SNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLARFD 190
S TY + G E+NY SG++SGFFS+ FIE T + L +FD
Sbjct: 70 SKTYEKDGTKVEMNYVSGTVSGFFSK-DIVTIANLSFPYKFIEVTDTNGFEPAYTLGQFD 128
Query: 191 GIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
GI+GLG++++++G PV + Q + + VF+F+L D + G + GG++ + ++
Sbjct: 129 GIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPF--DDKHKGYLTIGGIEDRFYE 186
Query: 251 GKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
G+ TY + YWQ +L D+ GN + AIVDSGTS + PT
Sbjct: 187 GQLTYEKLNHDLYWQVDL-DLHFGNLTV----EKATAIVDSGTSSITAPT 231
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC SI C Y
Sbjct: 1 SENDVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SIGCSTKHLYD 59
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT--FLLA 187
S KS +Y + G EI YGSG++ GFFS+ FIE T L + A
Sbjct: 60 SSKSKSYEKDGTKVEITYGSGTVRGFFSK-DLVTLGYLSLPYKFIEVTDTDDLEPLYTAA 118
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
FDGI+GLG++++++G P+ + Q + + +F+F+L + G + GG++ K
Sbjct: 119 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPV--HDKHSGYLTIGGIEEK 176
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTE 305
++G+ TY + +WQ +L D+ G S IVDSGTS + PT + +
Sbjct: 177 FYEGELTYEKLNHDLFWQVDL-DVNFGKTSM----EKANVIVDSGTSTITAPTSFINK 229
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 13/234 (5%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC S C + Y
Sbjct: 49 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYD 107
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLA-- 187
S KS +Y + G +I YGSG++ GFFS+ FIE T L + +
Sbjct: 108 SSKSKSYEKDGTKVDITYGSGTVKGFFSK-DLVTLGHLSMPYKFIEVTDTDDLEPIYSSV 166
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE-EGGEIVFGGVDP 246
FDGI+GLG++++++G P+ + Q + +F+F+L P + G + GG++
Sbjct: 167 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEE 223
Query: 247 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
K ++G TY + YWQ +L D+ G Q+ IVDSGT+ + P+
Sbjct: 224 KFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPS 272
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D++ L + + ++GE +G Q F +IFDTGS+NLWVPS KC S C + Y
Sbjct: 3 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYD 61
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLA-- 187
S KS +Y + G +I YGSG++ GFFS+ FIE L + +
Sbjct: 62 SSKSKSYEKDGTKVDITYGSGTVKGFFSK-DLVTLGHLSMPYKFIEVIDTDDLEPIYSSV 120
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE-EGGEIVFGGVDP 246
FDGI+GLG++++++G P+ + Q + +F+F+L P + G + GG++
Sbjct: 121 EFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL---PVHDVHAGYLTIGGIEE 177
Query: 247 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
K ++G TY + YWQ +L D+ G Q+ IVDSGT+ + P+
Sbjct: 178 KFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIVDSGTTTITAPS 226
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 12/242 (4%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHS 126
LG S+++I L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKH 58
Query: 127 RYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TF 184
Y S KS TY + G E+NY SG++SGFFS+ FIE T+
Sbjct: 59 LYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTY 117
Query: 185 LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
+ FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG+
Sbjct: 118 TASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGI 175
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
+ + ++G TY + YWQ L D +GN S + + C IVDSGTS + PT +
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDFLN 230
Query: 305 EI 306
++
Sbjct: 231 KM 232
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 12/242 (4%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHS 126
LG S+++I L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C
Sbjct: 123 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKH 180
Query: 127 RYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TF 184
Y S KS TY + G E+NY SG++SGFFS+ FIE T+
Sbjct: 181 LYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTY 239
Query: 185 LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
+ FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG+
Sbjct: 240 TASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGI 297
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
+ + ++G TY + YWQ L D +GN + IVDSGTS + PT +
Sbjct: 298 EERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLN 352
Query: 305 EI 306
++
Sbjct: 353 KM 354
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 11/239 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S D + L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C Y
Sbjct: 1 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 59
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLA 187
S KS TY + G E+NY SG++SGFFS+ FIE T+ +
Sbjct: 60 SSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTYTAS 118
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG++ +
Sbjct: 119 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEER 176
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306
++G TY + YWQ L D +GN S + + C IVDSGTS + PT + ++
Sbjct: 177 FYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDFLNKM 230
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 12/242 (4%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHS 126
LG S+++I L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C
Sbjct: 50 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKH 107
Query: 127 RYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TF 184
Y S KS TY + G E+NY SG++SGFFS+ FIE T+
Sbjct: 108 LYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTY 166
Query: 185 LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
+ FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG+
Sbjct: 167 TASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGI 224
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
+ + ++G TY + YWQ L D +GN + IVDSGTS + PT +
Sbjct: 225 EERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLN 279
Query: 305 EI 306
++
Sbjct: 280 KM 281
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 126/242 (52%), Gaps = 12/242 (4%)
Query: 67 LGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHS 126
LG S+++I L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C
Sbjct: 1 LGSSNDNI-ELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKH 58
Query: 127 RYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TF 184
Y S KS TY + G E+NY SG++SGFFS+ FIE T+
Sbjct: 59 LYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTY 117
Query: 185 LLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
+ FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG+
Sbjct: 118 TASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGI 175
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
+ + ++G TY + YWQ L D +GN + IVDSGTS + PT +
Sbjct: 176 EERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLN 230
Query: 305 EI 306
++
Sbjct: 231 KM 232
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 11/239 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S D + L +F + ++G+ +G Q F+ I DTGS+NLWVPS KC + C Y
Sbjct: 1 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYD 59
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSL--TFLLA 187
S KS TY + G E+NY SG++SGFFS+ FIE T+ +
Sbjct: 60 SSKSRTYEKDGTKVEMNYVSGTVSGFFSK-DLVTVGNLSLPYKFIEVIDTNGFEPTYTAS 118
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
FDGI+GLG++++++G P+ + Q + +F+F+L + G + GG++ +
Sbjct: 119 TFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIGGIEER 176
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306
++G TY + YWQ L D +GN + IVDSGTS + PT + ++
Sbjct: 177 FYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDFLNKM 230
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D + L + + ++GE IG+ Q F IFDTGS+NLWVPS C SI C Y
Sbjct: 1 SENDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD-SIGCSTKHLYD 59
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL--A 187
+ S +Y + G EI+YGSG++ G+FS+ FIE T L + +
Sbjct: 60 ASASKSYEKDGTKVEISYGSGTVRGYFSK-DVISLGDLSLPYKFIEVTDADDLEPIYSGS 118
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
FDGI+GLG++++++G PV + +Q + +F+F+L + G + GG++
Sbjct: 119 EFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPV--HDKHVGYLTIGGIESD 176
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
++G TY + YWQ +L DI G A+VDSGTS + PT
Sbjct: 177 FYEGPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVVDSGTSTITAPT 224
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC-YFSISCYFHSRYKSRKSNT 135
LKN+MDAQY+GEIGIG+PPQ F+V+FDTGSSNLWVPS C I+C+ H +Y S KS+T
Sbjct: 7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSST 66
Query: 136 YTEIGKSCEINYGSGSISGFFSQ 158
Y + G S +I+YGSGS+SG+ SQ
Sbjct: 67 YVKNGTSFDIHYGSGSLSGYLSQ 89
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 19/269 (7%)
Query: 75 LPLKNF-MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISC-YFHSRYKSRK 132
+P+ ++ D +Y+G++ IG+P + F++ FDTGSS+LW+ S+ C +C ++Y +
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC---TNCGSRQTKYDPNQ 62
Query: 133 SNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGI 192
S+TY G++ I+YG GS + IE + + +F DG+
Sbjct: 63 SSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGL 122
Query: 193 IGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
+GLGF I G P+ DN++ QGL+S +F +L + + GE +FGG D FK
Sbjct: 123 LGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFK 180
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 309
G T VP+ +G+W + +G + G I+D+GT+LL P + + A
Sbjct: 181 GSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARA 237
Query: 310 IG----GEGVVSAECKLVVSQYGDLIWDL 334
G G+G + C S++ L++ +
Sbjct: 238 YGASDNGDGTYTISCD--TSRFKPLVFSI 264
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D + LK+ + FGE +G Q F+ +F T SSN+WVPS KC S SC + Y
Sbjct: 124 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 182
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT--FLLA 187
S KS TY + ++ +G+ISG FS+ FIE T + +
Sbjct: 183 SSKSKTYEKDDTPVKLTSKAGTISGIFSK-DLVTIGKLSVPYKFIEMTEIVGFEPFYSES 241
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
DG+ GLG++++++G P + Q + + V+S +L P+ + G + GG++ +
Sbjct: 242 DVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEER 299
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
F G Y + WQ +L D+ GN V I+DS TS++ PT
Sbjct: 300 FFDGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 347
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK 129
S+ D + LK+ + FGE +G Q F+ +F T SSN+WVPS KC S SC + Y
Sbjct: 5 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYD 63
Query: 130 SRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT--FLLA 187
S KS TY + ++ +G+ISG FS+ FIE T + +
Sbjct: 64 SSKSKTYEKDDTPVKLTSKAGTISGIFSK-DLVTIGKLSVPYKFIEMTEIVGFEPFYSES 122
Query: 188 RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 247
DG+ GLG++++++G P + Q + + V+S +L P+ + G + GG++ +
Sbjct: 123 DVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEER 180
Query: 248 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 300
F G Y + WQ +L D+ GN V I+DS TS++ PT
Sbjct: 181 FFDGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 228
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 17/255 (6%)
Query: 75 LPLKNF-MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKS 133
+P+ ++ D +Y+G++ IG+P + F++ FDTGSS+LW+ S+ C S ++Y +S
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSG--QTKYDPNQS 63
Query: 134 NTYTEIGKSCEINYGSG-SISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGI 192
+TY G++ I+YG G S SG ++ A RE + +F DG+
Sbjct: 64 STYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGL 122
Query: 193 IGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
+GLGF I G P+ DN++ QGL+S +F +L + + GE +FGG D FK
Sbjct: 123 LGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAKNGGG-GEYIFGGYDSTKFK 180
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHA 309
G T VP+ +G+W + +G + G I+D+GT+LL P + + A
Sbjct: 181 GSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILDTGTTLLILPNNIAASVARA 237
Query: 310 IG----GEGVVSAEC 320
G G+G + C
Sbjct: 238 YGASDNGDGTYTISC 252
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 18/244 (7%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ IG+PPQ ++ DTGSSN V + Y + + + +S+TY G
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNFAVAGTP-----HSYIDTYFDTERSSTYRSKGFDVT 69
Query: 145 INYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLA--RFDGIIGLGFREIAV 202
+ Y GS +GF + AT S F L +++GI+GL + +A
Sbjct: 70 VKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAK 129
Query: 203 GDAV--PVWDNMVEQGLVSEEVFSFW-----LNRDPDAEEGGEIVFGGVDPKHFKGKHTY 255
+ +D++V Q + VFS L GG +V GG++P +KG Y
Sbjct: 130 PSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWY 188
Query: 256 VPVTKKGYWQFELGDILIGNQSTGV-CEGGCA--AIVDSGTSLLAGPTPVVTEINHAIGG 312
P+ ++ Y+Q E+ + IG QS + C A AIVDSGT+LL P V + A+
Sbjct: 189 TPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVAR 248
Query: 313 EGVV 316
++
Sbjct: 249 ASLI 252
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 114/258 (44%), Gaps = 31/258 (12%)
Query: 69 DSDEDILPLKN----FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCY 123
+++ I+PL F++ QY G IG+ QNF +FD+ S N+ V S +C + C
Sbjct: 1 EAEASIVPLYKLVHVFINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCP 58
Query: 124 FHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLT 183
+Y+ K Y G + +GS G + + A
Sbjct: 59 NLQKYEKLKPK-YISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEV 117
Query: 184 FLLARFDGIIGLGFREIAVGDAVP----------VWDNMVEQGLVSEEVFSFWLNRDPDA 233
+L+ ++ VG A P V +N VE+ L++ VFS R D
Sbjct: 118 CILSA----------DVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHARFQDG 166
Query: 234 EEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGT 293
E GEI+FGG D K+ G+ TYVP+ W+F L + IG+ T V G AI+D+
Sbjct: 167 EHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSK 224
Query: 294 SLLAGPTPVVTEINHAIG 311
+++ GP V IN AIG
Sbjct: 225 AIIVGPKAYVNPINEAIG 242
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 111/253 (43%), Gaps = 31/253 (12%)
Query: 74 ILPLKN----FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRY 128
I+PL F++ QY G IG+ QNF +FD+ S N+ V S +C + C +Y
Sbjct: 4 IVPLYKLVHVFINTQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVCPNLQKY 61
Query: 129 KSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLAR 188
+ K Y G + +GS G + + A +L+
Sbjct: 62 EKLKPK-YISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLADELSQEVCILSA 120
Query: 189 FDGIIGLGFREIAVGDAVP----------VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGE 238
++ VG A P V +N VE+ L++ VFS R D E GE
Sbjct: 121 ----------DVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHARFQDGEHFGE 169
Query: 239 IVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG 298
I+FGG D K+ G+ TYVP+ W+F L + IG+ T V G AI+D+ +++ G
Sbjct: 170 IIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVG 227
Query: 299 PTPVVTEINHAIG 311
P V IN AIG
Sbjct: 228 PKAYVNPINEAIG 240
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 58/303 (19%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVP--SSKCYFSIS------CYFHSRYKSRKSNTY 136
Y +I +GS Q +VI DTGSS+LWVP + C + S C Y S+
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 137 TEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTF---LLARFD--- 190
++ +I YG GS S + + G ++ +LA D
Sbjct: 74 QDLNTPFKIGYGDGSSS---------------QGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 191 ---GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
GI+G+G++ G D VPV + +QG++++ +S +LN PDA G +I+FGGV
Sbjct: 119 IDQGILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDAATG-QIIFGGV 174
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
D + G +PVT + LG + + ++ + ++DSGT++ +
Sbjct: 175 DNAKYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLAD 232
Query: 305 EINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIP 364
+I A G KL G+ + E C G FN ++ ++ +P
Sbjct: 233 QIIKAFNG--------KLTQDSNGNSFY---------EVDCNLSGDVVFNFSKNAKISVP 275
Query: 365 ITR 367
+
Sbjct: 276 ASE 278
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 103/240 (42%), Gaps = 24/240 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSIS--------CYFHSRYKSRKSNTY 136
Y +I IGS Q F+VI DTGSS+LWVP + C Y + S T
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 137 TEIGKSCEINYGSGSIS-GFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
+G I YG GS S G + F + T+ + GI+G+
Sbjct: 74 QNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKT-------SIPQGILGI 126
Query: 196 GFR-EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
G++ A GD V + QG++++ +S +LN P+A G+I+FGGVD + G
Sbjct: 127 GYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAAT-GQIIFGGVDKAKYSGSLI 184
Query: 255 YVPVTKKGYWQFELGDI-LIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
VPVT + L + +G G ++DSGT++ V +I A E
Sbjct: 185 AVPVTSDRELRITLNSLKAVGKN----INGNIDVLLDSGTTITYLQQDVAQDIIDAFQAE 240
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 94
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 95 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 154
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 155 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 213
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 214 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 268
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 269 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 304
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 39/272 (14%)
Query: 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSN 134
+P N + Y +G+GSP +S++ DTGSSN W+ + K Y K++
Sbjct: 5 VPATNQL-VDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYV-------------KTS 50
Query: 135 TYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIG 194
T + + YGSGS SG A+R+ + DGI+G
Sbjct: 51 TSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGV----DGILG 106
Query: 195 LGFREIAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNRDPDAEE---GGEIVFGG 243
+G ++ VG P V DN+ QG + + + ++ +P E GE+ FG
Sbjct: 107 VGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA--VSFEPTTSESSTNGELTFGA 164
Query: 244 VDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP 299
D + G TY P+T YW I G+ ++ + A IVD+GT+L
Sbjct: 165 TDSSKYTGSITYTPITSTSPASAYWGINQ-SIRYGSSTSILSS--TAGIVDTGTTLTLIA 221
Query: 300 TPVVTEINHAIGG-EGVVSAECKLVVSQYGDL 330
+ + A G + +L +QY +L
Sbjct: 222 SDAFAKYKKATGAVADNNTGLLRLTTAQYANL 253
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 109 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 282
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 283 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 318
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 85 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 258
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 259 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 294
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 32/301 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 129
Query: 203 GDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS L + A GG ++ GG+D + G
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPV----VTE 305
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V V
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 248
Query: 306 INHAIGGE----GVVSAECKLVVSQYGDLIWDL--LVSGLLPEKVCQQIGLCAFNGAEYV 359
I A E G E +LV Q G W++ ++S L +V QQ +Y+
Sbjct: 249 IKAASSTEKFPDGFWLGE-QLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYL 307
Query: 360 R 360
R
Sbjct: 308 R 308
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 32/301 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 68
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 128
Query: 203 GDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS L + A GG ++ GG+D + G
Sbjct: 129 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 187
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPV----VTE 305
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V V
Sbjct: 188 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 247
Query: 306 INHAIGGE----GVVSAECKLVVSQYGDLIWDL--LVSGLLPEKVCQQIGLCAFNGAEYV 359
I A E G E +LV Q G W++ ++S L +V QQ +Y+
Sbjct: 248 IKAASSTEKFPDGFWLGE-QLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYL 306
Query: 360 R 360
R
Sbjct: 307 R 307
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 258
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 259 ---AAVASIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 294
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 32/301 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQGSNWEGILGLAYAEIAR 131
Query: 203 GDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS L + A GG ++ GG+D + G
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLQQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPV----VTE 305
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V V
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS 250
Query: 306 INHAIGGE----GVVSAECKLVVSQYGDLIWDL--LVSGLLPEKVCQQIGLCAFNGAEYV 359
I A E G E +LV Q G W++ ++S L +V QQ +Y+
Sbjct: 251 IKAASSTEKFPDGFWLGE-QLVCWQAGTTPWNIFPVISLYLMGEVTQQSFRITILPQQYL 309
Query: 360 R 360
R
Sbjct: 310 R 310
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 248
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 249 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 284
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 125/300 (41%), Gaps = 58/300 (19%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSK--CYFSIS------CYFHSRYKSRKSNTY 136
Y +I +GS Q +VI DTGSS+LWVP C + S C Y S+
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYDPSGSSAS 73
Query: 137 TEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTF---LLARFD--- 190
++ I YG GS S + + G ++ +LA D
Sbjct: 74 QDLNTPFSIGYGDGSSS---------------QGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 191 ---GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244
GI+G+G++ G D VPV + +QG++++ +S +LN PD+ G +I+FGGV
Sbjct: 119 IDQGILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDSATG-QIIFGGV 174
Query: 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
D + G +PVT + LG + + ++ + ++DSGT++ +
Sbjct: 175 DNAKYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLAD 232
Query: 305 EINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIP 364
+I A G KL G+ + E C G FN ++ ++ +P
Sbjct: 233 QIIKAFNG--------KLTQDSNGNSFY---------EVDCNLSGDVVFNFSKNAKISVP 275
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 263
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 264 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 299
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 248
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 249 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 284
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 246
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 247 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 282
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 251
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 252 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 287
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 246
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 247 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 282
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 246
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 247 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 282
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 193
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 194 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 248
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 249 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 284
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 69
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 129
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 130 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 188
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 189 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 243
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 244 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 279
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 71
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 131
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 132 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 190
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 191 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 245
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 246 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 281
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 91
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 92 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 151
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 152 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 210
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 211 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 265
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 266 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 301
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 73
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 74 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 133
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 134 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 192
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 193 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 247
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 248 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 283
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 246
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 247 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 282
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 89
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 90 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 149
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 150 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 208
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 209 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 263
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 264 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 299
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 77
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 78 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 137
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 138 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 196
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 197 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 251
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 252 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 287
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 76 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 130
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 131 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 190
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 191 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 249
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 250 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 304
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 305 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 340
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 305
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 306 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 341
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 108
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 109 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 168
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 169 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 227
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 228 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 282
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 283 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 318
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 258
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 259 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 294
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 85
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 86 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 145
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 146 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 204
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 205 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 259
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 260 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 295
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 75
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 76 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 135
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 136 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 194
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 195 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 249
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 250 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 285
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 72
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 73 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 132
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 133 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 191
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 192 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 246
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 247 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 282
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 77 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 131
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 132 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 191
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 192 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 250
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 251 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 305
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 306 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 341
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 258
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 259 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 294
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 86
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 87 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 146
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 147 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 205
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 206 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 260
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 261 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 296
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 84
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 85 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 144
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 145 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 203
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 204 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 258
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 259 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 294
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 261
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 262 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 297
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 261
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 262 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 297
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 87
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 88 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 147
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 148 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 206
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 207 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 261
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 262 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 297
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYCQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSGT+ L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 35/285 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 88
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G+ +G + I A E F+ + ++GI+GL + EIA
Sbjct: 89 VPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 148
Query: 203 GDAV--PVWDNMVEQGLVSEEVFS-------FWLNR-DPDAEEGGEIVFGGVDPKHFKGK 252
D P +D++V+Q V +FS F LN+ + A GG ++ GG+D + G
Sbjct: 149 PDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGS 207
Query: 253 HTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHA 309
Y P+ ++ Y++ + + I Q + C+ +IVDSG + L P V
Sbjct: 208 LWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFE----- 262
Query: 310 IGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
V S + ++ D W L + VC Q G +N
Sbjct: 263 ---AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 298
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 25/242 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSS--KCYFSISCYFHSRYKSRKSNTYTEIGKS 142
Y ++ +GS Q +VI DTGSS+ WV S +C + C + S++Y +G +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 143 CEINYGSGSIS-GFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGF-REI 200
I YG GS S G + + + T+ + GI+G+G+
Sbjct: 74 FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQT-------SVDQGILGIGYTSNE 126
Query: 201 AVGD-----AVPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
AV D P +DN + +QG + +S +LN P AE G I+FGGVD + G
Sbjct: 127 AVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAET-GTIIFGGVDNAKYSG 184
Query: 252 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 311
K VT L + + S +G A++DSGT+L P+ ++ G
Sbjct: 185 KLVAEQVTSSQALTISLASVNLKGSSFSFGDG---ALLDSGTTLTYFPSDFAAQLADKAG 241
Query: 312 GE 313
Sbjct: 242 AR 243
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 25/249 (10%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSIS-------CYFHSRYKSRKSNTYT 137
Y +I +GS Q +V+ DTGSS+LWVP S+ C Y S++
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFCKNEGTYSPSSSSSSQ 73
Query: 138 EIGKSCEINYGSGSIS-GFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLG 196
+ I YG G+ S G + + F + T + GI+G+G
Sbjct: 74 NLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS-------TSVDQGILGIG 126
Query: 197 FR-EIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKH 253
++ A G D VPV + QG++S+ +S +LN G+I+FGGVD + G
Sbjct: 127 YKTHEAEGNYDNVPV--TLKNQGIISKNAYSLYLNSRQ--ATSGQIIFGGVDNAKYSGTL 182
Query: 254 TYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313
+PVT + L + + QS ++DSGT++ V ++ A G+
Sbjct: 183 IALPVTSDNELRIHLNTVKVAGQS---INADVDVLLDSGTTITYLQQGVADQVISAFNGQ 239
Query: 314 GVVSAECKL 322
A L
Sbjct: 240 ETYDANGNL 248
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 36/250 (14%)
Query: 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSC 143
+Y + IG+P Q+F ++FDTGSS+ WVP C S C + S+T+ +
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNL 78
Query: 144 EINYGSGSISGFFSQXXXX--XXXXXXXXXXFIEATR-------EGSLTFLLARFDGIIG 194
I YG+G +G + + +++ R + FL DG+ G
Sbjct: 79 NITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFL----DGLFG 134
Query: 195 LGFREIAVGDAV------PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 248
+ + +A V N+ +QGL+S +FS ++N + GE+VFGGV+
Sbjct: 135 AAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTL 191
Query: 249 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI---------VDSGTSLLAGP 299
G Y V + Y + D + TG+ G AA+ +D+GT+ P
Sbjct: 192 LGGDIAYTDVMSR-YGGYYFWDAPV----TGITVDGSAAVRFSRPQAFTIDTGTNFFIMP 246
Query: 300 TPVVTEINHA 309
+ ++I A
Sbjct: 247 SSAASKIVKA 256
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 295
GG+IV GG DP+H++G Y+ + K G WQ ++ + +G+ ST +CE GC A+VD+G S
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCLALVDTGASY 61
Query: 296 LAGPTPVVTEINHAIGGE 313
++G T + ++ A+G +
Sbjct: 62 ISGSTSSIEKLMEALGAK 79
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 27/224 (12%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWV--PSSKCYFSIS------CYFHSRYKSRKSNTY 136
Y +I +GS Q +V+ DTGSS+LWV ++C + S C + S++
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 137 TEIGKSCEINYGS-GSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGL 195
+ + I YG S G F + F + T + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTT-------TSVDQGIMGI 126
Query: 196 GFREIAVG----DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
GF G D VPV + +QG++++ +S +LN + DA G+I+FGGVD + G
Sbjct: 127 GFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSE-DAST-GKIIFGGVDNAKYTG 182
Query: 252 KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 295
T +PVT + LG I S ++DSGT++
Sbjct: 183 TLTALPVTSSVELRVHLGSINFDGTSVST---NADVVLDSGTTI 223
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 314 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGI 363
+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC +GA++V I
Sbjct: 5 AIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNI 54
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 56/305 (18%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSS-----------KCYFSISCYFHSRYKSRKS 133
Y +I +GS Q +VI DTGSS+LW+P S K F C Y S
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDF---CKSAGSYSPASS 70
Query: 134 NTYTEIGKSCEINYGSGSIS-GFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGI 192
T + +I YG GS + G + F + + GI
Sbjct: 71 RTSQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGI 123
Query: 193 IGLGFREIAVGDAVPV-WDNMV----EQGLVSEEVFSFWLNRDPDAEEG-GEIVFGGVDP 246
+G+GF+ G+A +DN+ QG++ + +S +LN AE G+I+FGG+D
Sbjct: 124 LGIGFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLNS---AEASTGQIIFGGIDK 177
Query: 247 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306
+ G +P+T + L + + ++ + ++DSGT++ +V I
Sbjct: 178 AKYSGSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVRNI 234
Query: 307 NHAIGGE-GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPI 365
+AIG + SA K+ V+ C+ G F +++ +P+
Sbjct: 235 LYAIGAQMKFDSAGNKVYVAD------------------CKTSGTIDFQFGNNLKISVPV 276
Query: 366 TRVLF 370
+ LF
Sbjct: 277 SEFLF 281
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 50/332 (15%)
Query: 68 GDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSR 127
GD D L +F +Y + IG+P Q+F ++FDTGSS+ WVP C S C
Sbjct: 3 GDGSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRF 62
Query: 128 YKSRKSNTYTEIGKSCEINYGSGSISG--FFSQXXXXXXXXXXXXXXFIE----ATREGS 181
+ S+T+ E + I YG+G +G F +++ T E S
Sbjct: 63 FDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQS 122
Query: 182 LTFLLARFDGIIGLGF-----REIAVGDAV-PVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235
L DGI G + E GD V N+ +QGL+S VFS ++N + +
Sbjct: 123 PDSEL-FLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQ 181
Query: 236 -----------GGEIVFGGVDPKHFKGKHTYVPVTKKGY--WQFELGDILIGNQSTGVCE 282
GG+I ++T V ++ GY W + + I +
Sbjct: 182 VVFGGVNNTLLGGDI------------QYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFD 229
Query: 283 GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLV-VSQYGDLIWDLLVSGLLP 341
G A +D+GT+ P+ ++ A + S + V S+Y D S
Sbjct: 230 GAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQD-------SKTTF 282
Query: 342 EKVCQQIGLCAFNGAEYVRLGIPITRVLFVLN 373
V Q+ G + ++ + + +PI+++L ++
Sbjct: 283 SLVLQKSG----SSSDTIDVSVPISKMLLPVD 310
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 33/277 (11%)
Query: 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE 144
Y+ E+ +GSPPQ +++ DTGSSN V ++ F H Y+ + S+TY ++ K
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-----LHRYYQRQLSSTYRDLRKGVY 74
Query: 145 INYGSGSISGFF-SQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIGLGFREIAV 202
+ Y G G + I A E F+ + ++GI+GL + EIA
Sbjct: 75 VPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIAR 134
Query: 203 GDAV--PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK 260
D P +D++V+Q V +FS L GG ++ GG+D + G Y P+ +
Sbjct: 135 PDDSLEPFFDSLVKQTHVP-NLFSLQLC------GGGSMIIGGIDHSLYTGSLWYTPIRR 187
Query: 261 KGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVS 317
+ Y++ + + I Q + C+ +IVDSGT+ L P V V S
Sbjct: 188 EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE--------AAVKS 239
Query: 318 AECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN 354
+ ++ D W L + VC Q G +N
Sbjct: 240 IKAASSTEKFPDGFW------LGEQLVCWQAGTTPWN 270
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 23/238 (9%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P+ + DA Y + IG+P Q ++ FDTGSS+LWV SS+ + S + Y KS T
Sbjct: 9 PIDSLDDA-YITPVQIGTPAQTLNLDFDTGSSDLWVFSSET--TASEVXQTIYTPSKSTT 65
Query: 136 YTEI-GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGII 193
+ G + I+YG GS S +E+ ++ S +F + DG++
Sbjct: 66 AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLL 125
Query: 194 GLGF---REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
GL F ++ +DN + + VF+ D G FG +D +
Sbjct: 126 GLAFSTLNTVSPTQQKTFFDN--AKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 179
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGN---QSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
G TY V TK+G+W++ +G+ +ST + I D+GT+LL P VV+
Sbjct: 180 GSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSI-----DGIADTGTTLLYLPATVVS 232
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 23/238 (9%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P+ + DA Y + IG+P Q ++ FDTGSS+LWV SS+ + S + Y KS T
Sbjct: 9 PIDSLDDA-YITPVQIGTPAQTLNLDFDTGSSDLWVFSSET--TASEVXQTIYTPSKSTT 65
Query: 136 YTEI-GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGII 193
+ G + I+YG GS S +E+ ++ S +F + DG++
Sbjct: 66 AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLL 125
Query: 194 GLGF---REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
GL F ++ +DN + + VF+ D G FG +D +
Sbjct: 126 GLAFSTLNTVSPTQQKTFFDN--AKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 179
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGN---QSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
G TY V TK+G+W++ +G+ +ST + I D+GT+LL P VV+
Sbjct: 180 GSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSI-----DGIADTGTTLLYLPATVVS 232
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 21/242 (8%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P N D +Y + IG N + FDTGS++LWV S++ S HS Y S T
Sbjct: 10 PTAN--DEEYITPVTIGGTTLNLN--FDTGSADLWVFSTELPASQQS-GHSVY--NPSAT 62
Query: 136 YTEI-GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGII 193
E+ G + I+YG GS + ++A ++ S F DG++
Sbjct: 63 GKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLL 122
Query: 194 GLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
GL F I + + + V+ L ++ +F+ L ++ G FG +D + G
Sbjct: 123 GLAFSSINTVQPQSQTTFFDTVKSSL-AQPLFAVALKH----QQPGVYDFGFIDSSKYTG 177
Query: 252 KHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAI 310
TY V +G+W F + G+QS G + I D+GT+LL VV++ +
Sbjct: 178 SLTYTGVDNSQGFWSFNVDSYTAGSQS----GDGFSGIADTGTTLLLLDDSVVSQYYSQV 233
Query: 311 GG 312
G
Sbjct: 234 SG 235
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 22/238 (9%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P+ + DA Y + IG+P Q ++ FDTGSS+LWV SS+ S + Y KS T
Sbjct: 9 PIDSLDDA-YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTT 66
Query: 136 YTEI-GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGII 193
+ G + I+YG GS S +E+ ++ S +F + DG++
Sbjct: 67 AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLL 126
Query: 194 GLGF---REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
GL F ++ +DN + + VF+ D G FG +D +
Sbjct: 127 GLAFSTLNTVSPTQXKTFFDN--AKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 180
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGN---QSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
G TY V TK+G+W++ +G+ +ST + I D+GT+LL P VV+
Sbjct: 181 GSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSI-----DGIADTGTTLLYLPATVVS 233
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 22/238 (9%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P+ + DA Y + IG+P Q ++ FDTGSS+LWV SS+ S + Y KS T
Sbjct: 9 PIDSLDDA-YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS-EVDGQTIYTPSKSTT 66
Query: 136 YTEI-GKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGII 193
+ G + I+YG GS S +E+ ++ S +F + DG++
Sbjct: 67 AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLL 126
Query: 194 GLGF---REIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFK 250
GL F ++ +DN + + VF+ D G FG +D +
Sbjct: 127 GLAFSTLNTVSPTQQKTFFDNA--KASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYT 180
Query: 251 GKHTYVPV-TKKGYWQFELGDILIGN---QSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304
G TY V TK+G+W++ +G+ +ST + I D+GT+LL P VV+
Sbjct: 181 GSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSI-----DGIADTGTTLLYLPATVVS 233
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 20/226 (8%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P N D +Y ++ +G + FDTGS++LWV SS+ S H Y S
Sbjct: 10 PTSN--DEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTPSSERS-GHDYYTPGSSAQ 64
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIG 194
+ G + I+YG GS + +E+ + S F DG++G
Sbjct: 65 KID-GATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLG 123
Query: 195 LGFREIAVGDAVP---VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKG 251
L F I P +DN+ + +SE +F+ L + G FG D + G
Sbjct: 124 LAFSSINTVQPTPQKTFFDNV--KSSLSEPIFAVALKHNAP----GVYDFGYTDSSKYTG 177
Query: 252 KHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLL 296
TY V +G+W F IG+ S+ G I D+GT+LL
Sbjct: 178 SITYTDVDNSQGFWGFTADGYSIGSDSSSDSITG---IADTGTTLL 220
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 98/241 (40%), Gaps = 17/241 (7%)
Query: 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNT 135
P N D +Y + +G + FDTGS++LWV S + S H Y S T
Sbjct: 9 PQNN--DEEYLTPVTVGK--STLHLDFDTGSADLWVFSDELPSSEQT-GHDLYTPSSSAT 63
Query: 136 YTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLL-ARFDGIIG 194
G S +I+YG GS + +EA + S F+ DG++G
Sbjct: 64 KLS-GYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLG 122
Query: 195 LGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGK 252
L F I A + + V+ L S +F+ L D G FG +D + G
Sbjct: 123 LAFSSINTVQPKAQTTFFDTVKSQLDS-PLFAVQLKHDAP----GVYDFGYIDDSKYTGS 177
Query: 253 HTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 311
TY + +GYW F IG+ S+ +AI D+GT+L+ +V+ +
Sbjct: 178 ITYTDADSSQGYWGFSTDGYSIGDGSSSSSG--FSAIADTGTTLILLDDEIVSAYYEQVS 235
Query: 312 G 312
G
Sbjct: 236 G 236
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 19/223 (8%)
Query: 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYK-SRKSNTYTEIG 140
D++Y + IG+P Q + FDTGSS+LWV SS+ S S H+ Y S+ S + G
Sbjct: 14 DSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKS-SATGHAIYTPSKSSTSKKVSG 72
Query: 141 KSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLAR-FDGIIGLGFRE 199
S I+YG GS S +E+ S F+ G++GL F
Sbjct: 73 ASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDS 132
Query: 200 IAVGDAV-----PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHT 254
G+ V W + L +E +F+ L + G FG +D KG
Sbjct: 133 ---GNQVRPHPQKTWFSNAASSL-AEPLFTADLRHG----QNGSYNFGYIDTSVAKGPVA 184
Query: 255 YVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLL 296
Y PV +G+W+F +G + I D+GT+LL
Sbjct: 185 YTPVDNSQGFWEFTASGYSVGGGK--LNRNSIDGIADTGTTLL 225
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 352
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 352
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 352
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 43 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 79
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA 352
+S EC+ VV YG I +L+ + PE VC + LC+
Sbjct: 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,518,942
Number of Sequences: 62578
Number of extensions: 492243
Number of successful extensions: 1378
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 128
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)