Query 016295
Match_columns 392
No_of_seqs 242 out of 2034
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.3E-63 2.8E-68 492.5 33.9 356 27-389 63-441 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 5.9E-61 1.3E-65 456.1 28.3 306 75-388 1-312 (317)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 4.5E-60 9.8E-65 452.0 29.7 309 79-388 1-320 (325)
4 cd05486 Cathespin_E Cathepsin 100.0 1.5E-59 3.3E-64 446.6 27.7 303 85-389 1-312 (316)
5 cd05485 Cathepsin_D_like Cathe 100.0 5.4E-59 1.2E-63 444.8 29.7 313 75-389 2-325 (329)
6 cd05487 renin_like Renin stimu 100.0 6.6E-59 1.4E-63 443.9 29.8 311 77-389 1-321 (326)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-58 2.7E-63 440.5 31.0 303 75-389 1-313 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 2.9E-58 6.3E-63 438.4 30.1 306 75-389 1-316 (320)
9 cd05477 gastricsin Gastricsins 100.0 1.1E-57 2.3E-62 434.3 29.8 302 82-389 1-313 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 6.1E-57 1.3E-61 441.9 33.9 308 70-389 125-444 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.3E-56 2.8E-61 438.8 32.1 308 69-388 123-442 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 5.7E-53 1.2E-57 401.8 25.4 302 84-389 1-312 (317)
13 cd06097 Aspergillopepsin_like 100.0 2.6E-52 5.7E-57 389.9 26.1 262 85-389 1-274 (278)
14 cd05473 beta_secretase_like Be 100.0 3.5E-48 7.6E-53 375.3 25.1 293 83-389 2-340 (364)
15 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-47 2.7E-52 366.1 24.9 277 83-389 2-318 (326)
16 cd05474 SAP_like SAPs, pepsin- 100.0 2.2E-46 4.9E-51 353.1 26.4 263 84-389 2-290 (295)
17 PLN03146 aspartyl protease fam 100.0 1.9E-46 4.1E-51 368.6 24.8 284 81-389 81-421 (431)
18 KOG1339 Aspartyl protease [Pos 100.0 5.2E-46 1.1E-50 363.5 25.0 300 72-388 34-386 (398)
19 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-44 2.6E-49 338.8 30.0 270 85-389 1-279 (283)
20 cd05472 cnd41_like Chloroplast 100.0 1.5E-45 3.2E-50 348.0 21.1 260 84-388 1-291 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 5.5E-44 1.2E-48 331.4 20.7 242 84-389 1-258 (265)
22 cd05475 nucellin_like Nucellin 100.0 9.4E-43 2E-47 324.4 20.6 251 83-388 1-265 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-36 3.7E-41 291.9 19.8 280 91-388 2-355 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 8.6E-24 1.9E-28 169.1 13.0 108 87-195 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 3.6E-21 7.8E-26 165.0 16.0 136 85-243 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.1 1.5E-10 3.2E-15 99.1 6.5 119 263-388 1-156 (161)
27 cd05483 retropepsin_like_bacte 98.3 1.6E-06 3.5E-11 66.8 6.9 92 84-197 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.8 0.00021 4.5E-09 57.8 9.1 101 75-197 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 97.1 0.0037 8E-08 47.2 8.4 88 87-196 1-89 (90)
30 COG3577 Predicted aspartyl pro 96.5 0.014 3E-07 50.6 7.7 105 71-197 92-197 (215)
31 cd05479 RP_DDI RP_DDI; retrope 96.2 0.03 6.5E-07 45.4 8.4 97 76-197 8-107 (124)
32 PF11925 DUF3443: Protein of u 96.0 0.082 1.8E-06 50.1 11.1 194 85-301 24-272 (370)
33 cd05484 retropepsin_like_LTR_2 95.3 0.14 2.9E-06 38.9 8.2 75 85-177 1-78 (91)
34 PF07966 A1_Propeptide: A1 Pro 94.3 0.054 1.2E-06 31.7 2.7 27 28-54 1-27 (29)
35 cd06095 RP_RTVL_H_like Retrope 93.9 0.35 7.5E-06 36.3 7.4 81 88-197 2-84 (86)
36 cd05479 RP_DDI RP_DDI; retrope 92.7 0.39 8.4E-06 38.8 6.3 30 271-307 21-50 (124)
37 PF13975 gag-asp_proteas: gag- 88.2 0.94 2E-05 32.7 4.3 34 81-116 5-38 (72)
38 TIGR02281 clan_AA_DTGA clan AA 85.4 2.2 4.8E-05 34.3 5.5 37 260-306 8-44 (121)
39 PF13650 Asp_protease_2: Aspar 82.5 1.8 4E-05 32.0 3.7 30 271-307 3-32 (90)
40 PF00077 RVP: Retroviral aspar 82.2 1.9 4.1E-05 33.0 3.7 29 86-116 7-35 (100)
41 PF13975 gag-asp_proteas: gag- 80.3 3.2 6.9E-05 29.9 4.1 29 271-306 13-41 (72)
42 cd05484 retropepsin_like_LTR_2 77.2 3.7 8E-05 30.9 3.8 31 271-308 5-35 (91)
43 PF07172 GRP: Glycine rich pro 75.4 2 4.4E-05 32.9 1.9 25 1-25 1-25 (95)
44 cd05483 retropepsin_like_bacte 74.9 5 0.00011 30.0 4.1 30 271-307 7-36 (96)
45 cd06095 RP_RTVL_H_like Retrope 74.9 4.2 9E-05 30.4 3.5 29 271-306 3-31 (86)
46 PF09668 Asp_protease: Asparty 74.3 5.7 0.00012 32.1 4.3 79 82-176 22-102 (124)
47 PF08284 RVP_2: Retroviral asp 70.4 43 0.00092 27.4 8.8 29 83-113 20-48 (135)
48 cd05482 HIV_retropepsin_like R 68.8 8.5 0.00018 29.0 3.9 27 88-116 2-28 (87)
49 COG3577 Predicted aspartyl pro 61.9 17 0.00037 31.9 4.9 37 261-307 103-139 (215)
50 PF00077 RVP: Retroviral aspar 56.6 10 0.00023 28.8 2.6 27 271-304 10-36 (100)
51 TIGR03698 clan_AA_DTGF clan AA 56.4 8.9 0.00019 30.0 2.2 23 284-306 16-39 (107)
52 PF12384 Peptidase_A2B: Ty3 tr 54.5 17 0.00037 30.7 3.6 31 82-114 32-62 (177)
53 COG5550 Predicted aspartyl pro 49.7 11 0.00024 30.1 1.7 22 287-308 29-51 (125)
54 PF09668 Asp_protease: Asparty 49.7 22 0.00047 28.7 3.4 29 271-306 29-57 (124)
55 cd05481 retropepsin_like_LTR_1 46.7 23 0.0005 26.9 3.1 23 285-307 11-33 (93)
56 cd05470 pepsin_retropepsin_lik 39.6 27 0.00058 26.8 2.5 21 283-303 10-30 (109)
57 TIGR03698 clan_AA_DTGF clan AA 36.2 44 0.00096 26.0 3.3 66 87-168 2-73 (107)
58 cd05476 pepsin_A_like_plant Ch 33.6 70 0.0015 29.2 4.7 43 72-114 133-193 (265)
59 cd06094 RP_Saci_like RP_Saci_l 29.7 2.2E+02 0.0047 21.5 5.8 65 96-178 8-74 (89)
60 cd05471 pepsin_like Pepsin-lik 28.3 73 0.0016 28.9 3.9 45 72-116 169-221 (283)
61 PLN03146 aspartyl protease fam 27.0 89 0.0019 31.1 4.5 42 73-114 268-324 (431)
62 cd06098 phytepsin Phytepsin, a 26.7 85 0.0018 29.5 4.1 40 73-114 180-227 (317)
63 cd05474 SAP_like SAPs, pepsin- 25.1 93 0.002 28.7 4.0 44 73-116 140-197 (295)
64 PRK14758 hypothetical protein; 24.6 99 0.0022 17.4 2.3 21 1-21 1-21 (27)
65 PF12384 Peptidase_A2B: Ty3 tr 22.8 92 0.002 26.5 3.0 28 283-310 44-71 (177)
66 KOG1339 Aspartyl protease [Pos 22.6 1.3E+02 0.0027 29.5 4.6 42 73-114 232-285 (398)
67 PF08284 RVP_2: Retroviral asp 21.3 90 0.002 25.5 2.7 23 284-306 32-54 (135)
68 cd00303 retropepsin_like Retro 21.0 1.7E+02 0.0037 19.9 4.1 22 285-306 10-31 (92)
69 cd05489 xylanase_inhibitor_I_l 20.9 1.3E+02 0.0028 29.1 4.2 41 72-114 186-246 (362)
70 PF15240 Pro-rich: Proline-ric 20.6 67 0.0015 27.6 1.8 17 8-24 2-18 (179)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.3e-63 Score=492.55 Aligned_cols=356 Identities=29% Similarity=0.473 Sum_probs=282.6
Q ss_pred ceEEEeeeeecCchhhhHHhhhhhhhhhccCCcccccccccCCCCcceeeceecCCceEEEEEEEcCCCceEEEEeccCC
Q 016295 27 GLRRIGLKKRRLDLHSLNAARITRKERYMGGAGVSGVRHRLGDSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGS 106 (392)
Q Consensus 27 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGS 106 (392)
.++||||+|.++.|..+.+.+......++...+.+...+.........+||.|+.|.+|+++|+||||||+|.|+|||||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGS 142 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGS 142 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeCCC
Confidence 68999999988877654443111000010001111000000000346799999999999999999999999999999999
Q ss_pred CceEEeCCCCCCCcccCcCccccCCCCCceee--cCC---EEEEEcCcceEEEEEEeeEEEEceEEecCeEEEEEEEeCC
Q 016295 107 SNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE--IGK---SCEINYGSGSISGFFSQDNVEVGDVVVKDQVFIEATREGS 181 (392)
Q Consensus 107 s~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~--~~~---~~~~~Y~~g~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~ 181 (392)
+++|||+..|. ...|..++.||+++|+||+. .+. .+.+.|++|++.|.++.|+|++|+..+++|.||++...++
T Consensus 143 S~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~ 221 (482)
T PTZ00165 143 SNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESL 221 (482)
T ss_pred CCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccc
Confidence 99999999997 56899999999999999998 555 6889999999999999999999999999999999998766
Q ss_pred cccccccceeeecCCccccc---cCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEeCccCCCCc--cCceEEE
Q 016295 182 LTFLLARFDGIIGLGFREIA---VGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKHTYV 256 (392)
Q Consensus 182 ~~~~~~~~~GilGLg~~~~s---~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~fGgid~~~~--~g~l~~~ 256 (392)
..|...++|||||||++..+ .....|++++|++||+|++++||+||.+... .+|+|+|||+|++++ .|+++|+
T Consensus 222 ~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~ 299 (482)
T PTZ00165 222 HPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWF 299 (482)
T ss_pred cccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEE
Confidence 56777789999999999873 3457899999999999999999999986532 379999999999877 5789999
Q ss_pred eccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCCceEEEecCc------cccccCce
Q 016295 257 PVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKL------VVSQYGDL 330 (392)
Q Consensus 257 p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~v~C~~------~~~~fg~~ 330 (392)
|+.+..||+|.+++|+|+++.+..+..++.|++||||+++++|.+++++|.+++++. .+|++ +.+.||+.
T Consensus 300 Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----~~C~~~~~lP~itf~f~g~ 375 (482)
T PTZ00165 300 PVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----EDCSNKDSLPRISFVLEDV 375 (482)
T ss_pred EccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----ccccccccCCceEEEECCC
Confidence 999999999999999999988776667889999999999999999999999999975 48985 34577764
Q ss_pred -----eeeeeecCcCccc--cccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 331 -----IWDLLVSGLLPEK--VCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 331 -----~~~v~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
.+++++.++.... ...+.+.|.++.......+..-.-++||+.|||++|+|||++|+|-
T Consensus 376 ~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rI 441 (482)
T PTZ00165 376 NGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMV 441 (482)
T ss_pred CCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEE
Confidence 7899999986542 2234578976666432211111114566777999999999999883
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.9e-61 Score=456.13 Aligned_cols=306 Identities=63% Similarity=1.058 Sum_probs=262.7
Q ss_pred eeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEE
Q 016295 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (392)
Q Consensus 75 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 154 (392)
+||.|+.+.+|+++|+||||||++.|+|||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999965568999999999999999999999999999999999
Q ss_pred EEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCC
Q 016295 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (392)
Q Consensus 155 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 234 (392)
.+++|+|++|+.+++++.|+++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666778999999999887777788999999999999999999998754334
Q ss_pred CCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCCc
Q 016295 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEG 314 (392)
Q Consensus 235 ~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~ 314 (392)
..|+|+|||+|+++|.|+++|+|+...+||.|.+++++|+++.+..+.....+++||||+++++|.+++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999988766667788999999999999999888775
Q ss_pred eEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCcc
Q 016295 315 VVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCR 388 (392)
Q Consensus 315 ~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R 388 (392)
|.+||+. +.+.||++.++|+++++.........+.|.+++............++||+.|||++|+|||+||+|
T Consensus 234 -~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~ 312 (317)
T cd06098 234 -SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLR 312 (317)
T ss_pred -ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCE
Confidence 6789985 456899999999999986443223346896554422111101112456777799999999999987
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.5e-60 Score=452.03 Aligned_cols=309 Identities=42% Similarity=0.774 Sum_probs=262.3
Q ss_pred ecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCC-CcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEE
Q 016295 79 NFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFS 157 (392)
Q Consensus 79 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~ 157 (392)
|+.|.+|+++|.||||||++.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 247988899999999999999999999999999999999
Q ss_pred eeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCc
Q 016295 158 QDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (392)
Q Consensus 158 ~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G 237 (392)
+|+|++|+..+++|.||++....+..|....++||||||++..+....+|++++|++||.|++++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776545555678999999999888777889999999999999999999998754333479
Q ss_pred eEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC----
Q 016295 238 EIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE---- 313 (392)
Q Consensus 238 ~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---- 313 (392)
+|+|||+|+++|.|++.|+|+.+..+|.|++++|+|+++.. .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~ 239 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQ 239 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCccccC
Confidence 99999999999999999999998899999999999987643 2445678999999999999999999999999764
Q ss_pred ceEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCc
Q 016295 314 GVVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSC 387 (392)
Q Consensus 314 ~~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~ 387 (392)
+.|.+||+. +.+.||++.++|+++++.......+.+.|..++............++||..|||++|+|||+|++
T Consensus 240 ~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~ 319 (325)
T cd05490 240 GEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDND 319 (325)
T ss_pred CCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCc
Confidence 779999985 45689999999999998644322344689555443211111112346677779999999999998
Q ss_pred c
Q 016295 388 R 388 (392)
Q Consensus 388 R 388 (392)
|
T Consensus 320 ~ 320 (325)
T cd05490 320 R 320 (325)
T ss_pred E
Confidence 8
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.5e-59 Score=446.59 Aligned_cols=303 Identities=38% Similarity=0.691 Sum_probs=258.9
Q ss_pred EEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEEeeEEEEc
Q 016295 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVG 164 (392)
Q Consensus 85 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~~g 164 (392)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4589989999999999999999999999999999999999999999
Q ss_pred eEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEeCcc
Q 016295 165 DVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV 244 (392)
Q Consensus 165 ~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~fGgi 244 (392)
+.++++|.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655456566789999999998877778889999999999999999999997644445899999999
Q ss_pred CCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC---ceEEEecC
Q 016295 245 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE---GVVSAECK 321 (392)
Q Consensus 245 d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~v~C~ 321 (392)
|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +..+..++|||||+++++|.+++++|.+.+++. +.|.+||+
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~ 238 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCS 238 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEecc
Confidence 99999999999999999999999999999998763 345678999999999999999999999999875 77999998
Q ss_pred c------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 322 L------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 322 ~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
. +.+.|+++.+++++.++.......+.+.|..++..........--++||..|||++|+|||+|++|.
T Consensus 239 ~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~I 312 (316)
T cd05486 239 TLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRV 312 (316)
T ss_pred ccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEe
Confidence 5 4568999999999999865432234578965543221100000123567777999999999999983
No 5
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.4e-59 Score=444.76 Aligned_cols=313 Identities=46% Similarity=0.804 Sum_probs=267.0
Q ss_pred eeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCC-CcccCcCccccCCCCCceeecCCEEEEEcCcceEE
Q 016295 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYF-SISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSIS 153 (392)
Q Consensus 75 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~ 153 (392)
.||+|+.|.+|+++|+||||+|++.|++||||+++||++..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47999999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCC
Q 016295 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDA 233 (392)
Q Consensus 154 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~ 233 (392)
|.+++|+|++|+..++++.||++....+..|.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988776778899999999999999999999876543
Q ss_pred CCCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC
Q 016295 234 EEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 313 (392)
Q Consensus 234 ~~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~ 313 (392)
...|+|+|||+|+++|.|+++|+|+.+.++|.|.++++.++++.. +..+..+||||||+++++|.+++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 457999999999999999999999999999999999999999865 455678999999999999999999999999875
Q ss_pred ----ceEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEe
Q 016295 314 ----GVVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYS 383 (392)
Q Consensus 314 ----~~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD 383 (392)
+.|.+||+. +.++||++.+.|+++++.......+.+.|.++..........--.+++|..|||++|+|||
T Consensus 240 ~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD 319 (329)
T cd05485 240 PIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFD 319 (329)
T ss_pred cccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEe
Confidence 678999985 4558999999999999865433334578965544321110000114566677999999999
Q ss_pred cCCccc
Q 016295 384 LGSCRQ 389 (392)
Q Consensus 384 ~e~~R~ 389 (392)
+|++|.
T Consensus 320 ~~~~~i 325 (329)
T cd05485 320 LGNNRV 325 (329)
T ss_pred CCCCEE
Confidence 999874
No 6
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.6e-59 Score=443.95 Aligned_cols=311 Identities=38% Similarity=0.713 Sum_probs=265.1
Q ss_pred ceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCC-cccCcCccccCCCCCceeecCCEEEEEcCcceEEEE
Q 016295 77 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFS-ISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGF 155 (392)
Q Consensus 77 l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~-~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~ 155 (392)
|+|+.|.+|+++|.||||||+++|++||||+++||++..|... ..|..++.|+|++|+||+..++.|++.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 5688899999999999999999999999999999999999632 478889999999999999999999999999999999
Q ss_pred EEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCC
Q 016295 156 FSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (392)
Q Consensus 156 ~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~ 235 (392)
+++|+|++|+..+. +.||++.......|.....+||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 88999887654445556789999999988777777899999999999999999999987643345
Q ss_pred CceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC--
Q 016295 236 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-- 313 (392)
Q Consensus 236 ~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-- 313 (392)
.|+|+|||+|+++|.|+++|+|+.+.++|+|.++++.|+++.+. +..+..++|||||+++++|.++++++++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~ 238 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKER 238 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc
Confidence 89999999999999999999999999999999999999998763 345678999999999999999999999999875
Q ss_pred -ceEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCC
Q 016295 314 -GVVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGS 386 (392)
Q Consensus 314 -~~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~ 386 (392)
+.|.+||+. +.+.||+..++|+++++.........+.|.+++.........---++||..|||++|+|||++|
T Consensus 239 ~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~ 318 (326)
T cd05487 239 LGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQN 318 (326)
T ss_pred CCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCC
Confidence 789999995 4568999999999999865543344578966655322110000124677777999999999999
Q ss_pred ccc
Q 016295 387 CRQ 389 (392)
Q Consensus 387 ~R~ 389 (392)
+|.
T Consensus 319 ~~I 321 (326)
T cd05487 319 NRI 321 (326)
T ss_pred CEE
Confidence 873
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-58 Score=440.52 Aligned_cols=303 Identities=39% Similarity=0.712 Sum_probs=264.4
Q ss_pred eeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEE
Q 016295 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (392)
Q Consensus 75 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 154 (392)
.||+|+.+.+|+++|.||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G 79 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTG 79 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEE
Confidence 3899999999999999999999999999999999999999996 457988999999999999999999999999999999
Q ss_pred EEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCC
Q 016295 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (392)
Q Consensus 155 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 234 (392)
.++.|+|++|+..++++.||++....+..+.....+||||||++..+.....|++++|++||+|++++||+||.+..+
T Consensus 80 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~-- 157 (317)
T cd05478 80 ILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ-- 157 (317)
T ss_pred EEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--
Confidence 999999999999999999999987654333334579999999998877777889999999999999999999998632
Q ss_pred CCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC-
Q 016295 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE- 313 (392)
Q Consensus 235 ~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 313 (392)
.+|+|+|||+|+++|.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|.+++++|.+++++.
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999999999999999999999874 334568999999999999999999999999874
Q ss_pred ---ceEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEec
Q 016295 314 ---GVVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSL 384 (392)
Q Consensus 314 ---~~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~ 384 (392)
+.|.+||+. +.++|+|+.++||++++.... .+.|..++....... .+++|..|||++|+|||+
T Consensus 237 ~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~~~----~~IlG~~fl~~~y~vfD~ 308 (317)
T cd05478 237 NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMGLGE----LWILGDVFIRQYYSVFDR 308 (317)
T ss_pred ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCCCCC----eEEechHHhcceEEEEeC
Confidence 779999985 355889999999999986542 578965554322222 245677779999999999
Q ss_pred CCccc
Q 016295 385 GSCRQ 389 (392)
Q Consensus 385 e~~R~ 389 (392)
||+|.
T Consensus 309 ~~~~i 313 (317)
T cd05478 309 ANNKV 313 (317)
T ss_pred CCCEE
Confidence 99874
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.9e-58 Score=438.40 Aligned_cols=306 Identities=41% Similarity=0.707 Sum_probs=264.8
Q ss_pred eeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEE
Q 016295 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISG 154 (392)
Q Consensus 75 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G 154 (392)
+||.|+.+.+|+++|+||||+|++.|+|||||+++||++..|. ...|..++.|++++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5899999999999999999999999999999999999999996 457998899999999999999999999999999999
Q ss_pred EEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCC
Q 016295 155 FFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAE 234 (392)
Q Consensus 155 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 234 (392)
.+++|+|++++..++++.|+++....+..|.....+||||||++..+.....|.+.+|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544555678999999999887666778889999999999999999999853 2
Q ss_pred CCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC-
Q 016295 235 EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE- 313 (392)
Q Consensus 235 ~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 313 (392)
..|.|+|||+|+++|.|+++|+|+....+|.|.+++|+||++.+. ..+..++|||||+++++|.+++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 389999999999999999999999988999999999999998764 34568999999999999999999999999875
Q ss_pred ---ceEEEecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEec
Q 016295 314 ---GVVSAECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSL 384 (392)
Q Consensus 314 ---~~~~v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~ 384 (392)
+.|.+||+. +.++|+++.+.||++++... ..+.|...+............++||..|||++|+|||+
T Consensus 236 ~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~ 311 (320)
T cd05488 236 SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLE----VSGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDL 311 (320)
T ss_pred ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheec----CCCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeC
Confidence 779999985 45689999999999998653 24689555443221111112357778889999999999
Q ss_pred CCccc
Q 016295 385 GSCRQ 389 (392)
Q Consensus 385 e~~R~ 389 (392)
|++|.
T Consensus 312 ~~~~i 316 (320)
T cd05488 312 GNNAV 316 (320)
T ss_pred CCCEE
Confidence 99984
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-57 Score=434.35 Aligned_cols=302 Identities=37% Similarity=0.681 Sum_probs=261.3
Q ss_pred CceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEEeeEE
Q 016295 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNV 161 (392)
Q Consensus 82 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v 161 (392)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.|++.|++|++.|.++.|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579989999999999999999999999999999999999999
Q ss_pred EEceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEe
Q 016295 162 EVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (392)
Q Consensus 162 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~f 241 (392)
++|+.++++|.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ...+|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999865544545567999999999888777889999999999999999999998753 223799999
Q ss_pred CccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC----ceEE
Q 016295 242 GGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVS 317 (392)
Q Consensus 242 Ggid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~ 317 (392)
||+|+++|.|+++|+|+.+..+|.|.++++.|+++....+..+..++|||||+++++|++++++|++.+++. +.|.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~ 238 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYV 238 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEE
Confidence 999999999999999999999999999999999988765556678999999999999999999999999875 7899
Q ss_pred EecCc------cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCc-chhHHHHHHHhhcceEEEEecCCccc
Q 016295 318 AECKL------VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGI-PITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 318 v~C~~------~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~-~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
+||+. +.+.|++..+++|++++.... .+.|.+++.+...+.. ..-.+++|..|||++|+|||+||+|.
T Consensus 239 ~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~i 313 (318)
T cd05477 239 VNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQV 313 (318)
T ss_pred EeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEE
Confidence 99985 456899999999999886542 4789766653211000 00124567777999999999999984
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.1e-57 Score=441.93 Aligned_cols=308 Identities=30% Similarity=0.510 Sum_probs=260.6
Q ss_pred CCcceeeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCc
Q 016295 70 SDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGS 149 (392)
Q Consensus 70 ~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~ 149 (392)
+....+||.|+.+.+|+++|+||||||++.|+|||||+++||+|..|. ...|..++.|||++|+||+..++.|.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 466789999999999999999999999999999999999999999996 5689999999999999999999999999999
Q ss_pred ceEEEEEEeeEEEEceEEecCeEEEEEEEeCCc--ccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEe
Q 016295 150 GSISGFFSQDNVEVGDVVVKDQVFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL 227 (392)
Q Consensus 150 g~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l 227 (392)
|++.|.++.|+|++|+.+++ +.|+++....+. .+....++||||||++..+.....|++.+|++||+|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999998 568777654431 233456899999999988877788999999999999999999999
Q ss_pred CCCCCCCCCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHH
Q 016295 228 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 228 ~~~~~~~~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
.+.. ...|.|+|||+|+++|.|+++|+|+.+..+|.|.++ +.+++.. .....+++||||+++++|+++++++.
T Consensus 283 ~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 8653 238999999999999999999999998899999998 5777643 24678999999999999999999999
Q ss_pred HHhCCC-----ceEEEecCc-----cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcc
Q 016295 308 HAIGGE-----GVVSAECKL-----VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLA 377 (392)
Q Consensus 308 ~~i~~~-----~~~~v~C~~-----~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~ 377 (392)
+++++. +.|.++|+. +.+.|++..++++++++.........+.|.+++....... -.+++|+.|||+
T Consensus 356 ~~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~---~~~ILGd~FLr~ 432 (453)
T PTZ00147 356 ESLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEK---NTFILGDPFMRK 432 (453)
T ss_pred HHhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCCCC---CCEEECHHHhcc
Confidence 999753 668899984 4457899999999999864432334578966665432211 124566667999
Q ss_pred eEEEEecCCccc
Q 016295 378 MQLVYSLGSCRQ 389 (392)
Q Consensus 378 ~y~VfD~e~~R~ 389 (392)
+|+|||+||+|.
T Consensus 433 ~YtVFD~~n~rI 444 (453)
T PTZ00147 433 YFTVFDYDNHTV 444 (453)
T ss_pred EEEEEECCCCEE
Confidence 999999999873
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.3e-56 Score=438.78 Aligned_cols=308 Identities=28% Similarity=0.518 Sum_probs=258.5
Q ss_pred CCCcceeeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcC
Q 016295 69 DSDEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYG 148 (392)
Q Consensus 69 ~~~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~ 148 (392)
......+||.++.+.+|+++|+||||||++.|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|+
T Consensus 123 ~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG 201 (450)
T PTZ00013 123 GSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYG 201 (450)
T ss_pred ccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEEC
Confidence 3467789999999999999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred cceEEEEEEeeEEEEceEEecCeEEEEEEEeCC--cccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEE
Q 016295 149 SGSISGFFSQDNVEVGDVVVKDQVFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 226 (392)
Q Consensus 149 ~g~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~--~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~ 226 (392)
+|++.|.+++|+|++|+.+++ +.|+++..... ..+....++||||||++..+.....|++.+|++||+|++++||+|
T Consensus 202 ~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~ 280 (450)
T PTZ00013 202 SGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFY 280 (450)
T ss_pred CceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEE
Confidence 999999999999999999987 56777665432 124445789999999998877778899999999999999999999
Q ss_pred eCCCCCCCCCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHH
Q 016295 227 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 227 l~~~~~~~~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
|.+.+ ...|+|+|||+|+++|.|+++|+|+.+..+|.|.++ +.++.... ....+++||||+++++|.++++++
T Consensus 281 L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i 353 (450)
T PTZ00013 281 LPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKF 353 (450)
T ss_pred ecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHH
Confidence 98653 238999999999999999999999998899999998 66664332 456899999999999999999999
Q ss_pred HHHhCCC-----ceEEEecCc-----cccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhc
Q 016295 307 NHAIGGE-----GVVSAECKL-----VVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRL 376 (392)
Q Consensus 307 ~~~i~~~-----~~~~v~C~~-----~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr 376 (392)
++++++. +.|.+||+. +.+.|++..+++++.++.......+.+.|.+++.+..... -.++||+.|||
T Consensus 354 ~~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~---~~~ILGd~FLr 430 (450)
T PTZ00013 354 FANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDD---NTFILGDPFMR 430 (450)
T ss_pred HHHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCCCC---CCEEECHHHhc
Confidence 9999764 678999984 4557889999999988753322233468976665432211 12456666799
Q ss_pred ceEEEEecCCcc
Q 016295 377 AMQLVYSLGSCR 388 (392)
Q Consensus 377 ~~y~VfD~e~~R 388 (392)
++|+|||+||+|
T Consensus 431 ~~Y~VFD~~n~r 442 (450)
T PTZ00013 431 KYFTVFDYDKES 442 (450)
T ss_pred cEEEEEECCCCE
Confidence 999999999987
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=5.7e-53 Score=401.76 Aligned_cols=302 Identities=33% Similarity=0.586 Sum_probs=259.7
Q ss_pred eEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEEeeEEEE
Q 016295 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEV 163 (392)
Q Consensus 84 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~~ 163 (392)
+|+++|+||+|+|+++|++||||+++||+++.|..+..|..+..|++.+|+|++..++.+.+.|++|++.|.++.|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999974446788899999999999999999999999999999999999999
Q ss_pred ceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCC-CCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEeC
Q 016295 164 GDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (392)
Q Consensus 164 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~-~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~fG 242 (392)
|+..++++.|+++....+..+.....+||||||++..+... .++++++|++||+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999976655667788999999988776554 788999999999999999999999874 347999999
Q ss_pred ccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC---ceEEEe
Q 016295 243 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE---GVVSAE 319 (392)
Q Consensus 243 gid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~v~ 319 (392)
|+|+++|+|+++|+|+....+|.+.+++|.+++... .......+++|||++++++|.+++++|++++++. +.|.+|
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~ 237 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVP 237 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEE
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccccceeEEEe
Confidence 999999999999999999999999999999999832 2445678999999999999999999999999886 789999
Q ss_pred cCcc------ccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 320 CKLV------VSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 320 C~~~------~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
|+.. .+.|++..+++|++++...........|++.+..... ......++||..|||++|+|||+|++|.
T Consensus 238 c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~~i 312 (317)
T PF00026_consen 238 CNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVFDYENNRI 312 (317)
T ss_dssp TTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEEETTTTEE
T ss_pred cccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecHHHhhceEEEEeCCCCEE
Confidence 9974 5588999999999999666544444589777776221 1122334567777999999999999984
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.6e-52 Score=389.90 Aligned_cols=262 Identities=29% Similarity=0.457 Sum_probs=225.2
Q ss_pred EEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceee-cCCEEEEEcCcce-EEEEEEeeEEE
Q 016295 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTE-IGKSCEINYGSGS-ISGFFSQDNVE 162 (392)
Q Consensus 85 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~-~~~~~~~~Y~~g~-~~G~~~~D~v~ 162 (392)
|+++|+||+|||++.|+|||||+++||+++.|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 33456677899999999987 5789999999997 89999999999
Q ss_pred EceEEecCeEEEEEEEeCCcccccccceeeecCCccccccC---CCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceE
Q 016295 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEI 239 (392)
Q Consensus 163 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l 239 (392)
+|+.+++++.||++.......+....++||||||++..+.. ..++++++|++|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455667899999999876542 45679999999964 89999999863 28999
Q ss_pred EeCccCCCCccCceEEEeccc-cCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHh-CCC----
Q 016295 240 VFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAI-GGE---- 313 (392)
Q Consensus 240 ~fGgid~~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i-~~~---- 313 (392)
+|||+|+++|.|+++|+|+.+ ..+|.|+++++.|+++... ......++|||||+++++|.+++++|++++ ++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~ 232 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSE 232 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCC
Confidence 999999999999999999987 7899999999999987432 346778999999999999999999999999 443
Q ss_pred -ceEEEecCccccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 314 -GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 314 -~~~~v~C~~~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
+.|.+||++. +....|.+ .++||+.|||++|+|||+||+|.
T Consensus 233 ~~~~~~~C~~~---~P~i~f~~--------------------------------~~ilGd~fl~~~y~vfD~~~~~i 274 (278)
T cd06097 233 YGGWVFPCDTT---LPDLSFAV--------------------------------FSILGDVFLKAQYVVFDVGGPKL 274 (278)
T ss_pred CCEEEEECCCC---CCCEEEEE--------------------------------EEEEcchhhCceeEEEcCCCcee
Confidence 7799999974 33444444 24567777999999999999984
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.5e-48 Score=375.35 Aligned_cols=293 Identities=25% Similarity=0.367 Sum_probs=226.4
Q ss_pred ceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEEeeEEE
Q 016295 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (392)
Q Consensus 83 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ 162 (392)
..|+++|.||||+|+|.|+|||||+++||++..| |..++.|+|++|+||+..++.|++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999877 33467999999999999999999999999999999999999
Q ss_pred EceEEecCeE----EEEEEEeCCcccccccceeeecCCcccccc--CCCCChHHHHHHcCCCCCceEEEEeCCCC-----
Q 016295 163 VGDVVVKDQV----FIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP----- 231 (392)
Q Consensus 163 ~g~~~~~~~~----fg~~~~~~~~~~~~~~~~GilGLg~~~~s~--~~~~~~~~~l~~~g~i~~~~fs~~l~~~~----- 231 (392)
+|+. .++. |+++.......+.....+||||||++.++. ...+|++++|++|+.+ +++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433322111223579999999998764 2467899999999997 689999996421
Q ss_pred --CCCCCceEEeCccCCCCccCceEEEeccccCceEEEeceEEEcceeeeeecC---CeeEEEeCCCCCcccCHHHHHHH
Q 016295 232 --DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 232 --~~~~~G~l~fGgid~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~---~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
.....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+..... ...+||||||+++++|.+++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1234799999999999999999999999889999999999999987754221 24699999999999999999999
Q ss_pred HHHhCCC-----------ceEEEecCcc-----------ccccCc------eeeeeeecCcCccccc-cccCeeee-CCc
Q 016295 307 NHAIGGE-----------GVVSAECKLV-----------VSQYGD------LIWDLLVSGLLPEKVC-QQIGLCAF-NGA 356 (392)
Q Consensus 307 ~~~i~~~-----------~~~~v~C~~~-----------~~~fg~------~~~~v~~~~~~~~~~~-~~~~~C~~-~~~ 356 (392)
.+++++. +.+.++|... .+.|++ ..+.+++.++...... .....|.. +..
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~ 313 (364)
T cd05473 234 VDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAIS 313 (364)
T ss_pred HHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeee
Confidence 9999753 1235799742 225543 3578888777543211 12467942 222
Q ss_pred ccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 357 EYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 357 ~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
+ ..+ .+++|..|||++|+|||+||+|-
T Consensus 314 ~--~~~----~~ILG~~flr~~yvvfD~~~~rI 340 (364)
T cd05473 314 Q--STN----GTVIGAVIMEGFYVVFDRANKRV 340 (364)
T ss_pred c--CCC----ceEEeeeeEcceEEEEECCCCEE
Confidence 2 112 25667777999999999999883
No 15
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-47 Score=366.11 Aligned_cols=277 Identities=28% Similarity=0.392 Sum_probs=225.7
Q ss_pred ceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccC--cCccccCCCCCceeec----------------CCEEE
Q 016295 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCY--FHSRYKSRKSNTYTEI----------------GKSCE 144 (392)
Q Consensus 83 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~y~~~~Sst~~~~----------------~~~~~ 144 (392)
..|+++|+||||||++.|+|||||+++||+|..|. .|. .++.|+|.+|+|++.. .+.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999997 454 4578999999999863 56899
Q ss_pred EEcCcce-EEEEEEeeEEEEceEEec-------CeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcC
Q 016295 145 INYGSGS-ISGFFSQDNVEVGDVVVK-------DQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (392)
Q Consensus 145 ~~Y~~g~-~~G~~~~D~v~~g~~~~~-------~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 216 (392)
+.|++|+ +.|.+++|+|++|+..++ ++.||++....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999877654 35556689999999986542 223455588887
Q ss_pred CCCC--ceEEEEeCCCCCCCCCceEEeCccCCCCcc----------CceEEEeccccCceEEEeceEEEcceee-eeecC
Q 016295 217 LVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQST-GVCEG 283 (392)
Q Consensus 217 ~i~~--~~fs~~l~~~~~~~~~G~l~fGgid~~~~~----------g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~~~~~ 283 (392)
.+.. ++||+||++. .|.|+|||+|+.+|. +++.|+|+.+..+|.|.+++|+|+++.. .....
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7665 9999999864 799999999999997 8999999998899999999999998751 11345
Q ss_pred CeeEEEeCCCCCcccCHHHHHHHHHHhCCCceEEEecCccccccC-ceeeeeeecCcCccccccccCeeeeCCcccccCC
Q 016295 284 GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYG-DLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLG 362 (392)
Q Consensus 284 ~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~v~C~~~~~~fg-~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 362 (392)
...++|||||+++++|++++++|.+++ ..+.+.|+ +..+.++++++.... ....|+++.... .+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~----------P~i~~~f~~g~~~~i~p~~y~~~~---~~~~c~~~~~~~--~~ 295 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFF----------PTITIIFENNLKIDWKPSSYLYKK---ESFWCKGGEKSV--SN 295 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhc----------CcEEEEEcCCcEEEECHHHhcccc---CCceEEEEEecC--CC
Confidence 678999999999999999999999998 46777897 899999999986542 223465554432 22
Q ss_pred cchhHHHHHHHhhcceEEEEecCCccc
Q 016295 363 IPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 363 ~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
. +++|..|||++|+|||+|++|.
T Consensus 296 ~----~ILG~~flr~~y~vFD~~~~ri 318 (326)
T cd06096 296 K----PILGASFFKNKQIIFDLDNNRI 318 (326)
T ss_pred c----eEEChHHhcCcEEEEECcCCEE
Confidence 2 3567777999999999999873
No 16
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.2e-46 Score=353.06 Aligned_cols=263 Identities=27% Similarity=0.465 Sum_probs=223.1
Q ss_pred eEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcc-eEEEEEEeeEEE
Q 016295 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDNVE 162 (392)
Q Consensus 84 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g-~~~G~~~~D~v~ 162 (392)
.|+++|+||||+|++.|++||||+++||+ .|++.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999996 678899995 599999999999
Q ss_pred EceEEecCeEEEEEEEeCCcccccccceeeecCCcccccc-----CCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCc
Q 016295 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGG 237 (392)
Q Consensus 163 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-----~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G 237 (392)
+++..++++.||++.... ..+||||||++..+. ...++++++|++||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998742 359999999988743 24557999999999999999999998753 2389
Q ss_pred eEEeCccCCCCccCceEEEecccc------CceEEEeceEEEcceeee--eecCCeeEEEeCCCCCcccCHHHHHHHHHH
Q 016295 238 EIVFGGVDPKHFKGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCAAIVDSGTSLLAGPTPVVTEINHA 309 (392)
Q Consensus 238 ~l~fGgid~~~~~g~l~~~p~~~~------~~w~v~~~~i~v~~~~~~--~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~ 309 (392)
.|+|||+|+++|.|+++|+|+... .+|.|.+++|.++++... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999988753 234567899999999999999999999999
Q ss_pred hCCC-----ceEEEecCc-----cccccCceeeeeeecCcCcccc--ccccCeeeeCCcccccCCcchhHHHHHHHhhcc
Q 016295 310 IGGE-----GVVSAECKL-----VVSQYGDLIWDLLVSGLLPEKV--CQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLA 377 (392)
Q Consensus 310 i~~~-----~~~~v~C~~-----~~~~fg~~~~~v~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~ 377 (392)
+++. +.|.++|+. +.+.|++..++||++++..... ....+.|++.+.+... . .+++|..|||+
T Consensus 204 ~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~-~----~~iLG~~fl~~ 278 (295)
T cd05474 204 LGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQPSTS-D----YNILGDTFLRS 278 (295)
T ss_pred hCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC-C----cEEeChHHhhc
Confidence 9875 778999985 4558999999999999854421 1245799777665332 2 34566667999
Q ss_pred eEEEEecCCccc
Q 016295 378 MQLVYSLGSCRQ 389 (392)
Q Consensus 378 ~y~VfD~e~~R~ 389 (392)
+|+|||+|++|.
T Consensus 279 ~y~vfD~~~~~i 290 (295)
T cd05474 279 AYVVYDLDNNEI 290 (295)
T ss_pred EEEEEECCCCEE
Confidence 999999999984
No 17
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=368.63 Aligned_cols=284 Identities=24% Similarity=0.412 Sum_probs=219.7
Q ss_pred CCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccC--cCccccCCCCCceeecC------------------
Q 016295 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCY--FHSRYKSRKSNTYTEIG------------------ 140 (392)
Q Consensus 81 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~y~~~~Sst~~~~~------------------ 140 (392)
.+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999986 576 45799999999998642
Q ss_pred --CEEEEEcCcce-EEEEEEeeEEEEce-----EEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHH
Q 016295 141 --KSCEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM 212 (392)
Q Consensus 141 --~~~~~~Y~~g~-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 212 (392)
+.|.+.|++|+ +.|.+++|+++|++ ..++++.|||+....+ .|. ...+||||||+...+ ++.+|
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 4689999999987654 232 247999999998766 66676
Q ss_pred HHcCCCCCceEEEEeCCCC-CCCCCceEEeCccCCCCccC-ceEEEeccc---cCceEEEeceEEEcceeeeeecC----
Q 016295 213 VEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG---- 283 (392)
Q Consensus 213 ~~~g~i~~~~fs~~l~~~~-~~~~~G~l~fGgid~~~~~g-~l~~~p~~~---~~~w~v~~~~i~v~~~~~~~~~~---- 283 (392)
..+ +. ++||+||.+.. +....|.|+||+. +++.| .+.|+|+.. ..+|.|.+++|+||++.+.....
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 53 59999997532 2234899999984 55554 489999974 46999999999999988754321
Q ss_pred --CeeEEEeCCCCCcccCHHHHHHHHHHh----CCC-----ceEEEecCc---------cccccCceeeeeeecCcCccc
Q 016295 284 --GCAAIVDSGTSLLAGPTPVVTEINHAI----GGE-----GVVSAECKL---------VVSQYGDLIWDLLVSGLLPEK 343 (392)
Q Consensus 284 --~~~aiiDTGt~~i~lP~~~~~~i~~~i----~~~-----~~~~v~C~~---------~~~~fg~~~~~v~~~~~~~~~ 343 (392)
...+||||||+++++|+++++++.+++ +.. ..+..+|.. +.++|+|..+.+++.++....
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~ 384 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKV 384 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEc
Confidence 247999999999999999988876654 321 123457863 456899999999988774432
Q ss_pred cccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 344 VCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 344 ~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
.....| +++... ... +++|..|+|++|+|||+|++|.
T Consensus 385 --~~~~~C-l~~~~~--~~~----~IlG~~~q~~~~vvyDl~~~~i 421 (431)
T PLN03146 385 --SEDLVC-FAMIPT--SSI----AIFGNLAQMNFLVGYDLESKTV 421 (431)
T ss_pred --CCCcEE-EEEecC--CCc----eEECeeeEeeEEEEEECCCCEE
Confidence 223578 555432 122 4667777999999999999873
No 18
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-46 Score=363.49 Aligned_cols=300 Identities=35% Similarity=0.632 Sum_probs=240.3
Q ss_pred cceeeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCc-Ccc-ccCCCCCceeecCCE-------
Q 016295 72 EDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYF-HSR-YKSRKSNTYTEIGKS------- 142 (392)
Q Consensus 72 ~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~-~~~-y~~~~Sst~~~~~~~------- 142 (392)
....++..+.+.+|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..++.
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 34566777788899999999999999999999999999999999963 6864 444 999999999987632
Q ss_pred -----------EEEEcCcce-EEEEEEeeEEEEce---EEecCeEEEEEEEeCCccccc-ccceeeecCCccccccCCCC
Q 016295 143 -----------CEINYGSGS-ISGFFSQDNVEVGD---VVVKDQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAV 206 (392)
Q Consensus 143 -----------~~~~Y~~g~-~~G~~~~D~v~~g~---~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~~~ 206 (392)
|.+.|++|. +.|.+++|+|++++ ..++++.||++....+. +.. .+++||||||+..++.....
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 999999955 89999999999998 78888999999988765 444 67899999999998855444
Q ss_pred ChHHHHHHcCCCCCceEEEEeCCCCCC-CCCceEEeCccCCCCccCceEEEeccccC--ceEEEeceEEEccee----ee
Q 016295 207 PVWDNMVEQGLVSEEVFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TG 279 (392)
Q Consensus 207 ~~~~~l~~~g~i~~~~fs~~l~~~~~~-~~~G~l~fGgid~~~~~g~l~~~p~~~~~--~w~v~~~~i~v~~~~----~~ 279 (392)
+.+.++ .++||+||.+.... ..+|.|+||++|+.++.++++|+|+.... +|.|.+++|.|+++. ..
T Consensus 191 ~~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 333322 23899999987533 25899999999999999999999998877 999999999999842 22
Q ss_pred eecCCeeEEEeCCCCCcccCHHHHHHHHHHhCC----C---ceEEEecCc----------cccccC-ceeeeeeecCcCc
Q 016295 280 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----E---GVVSAECKL----------VVSQYG-DLIWDLLVSGLLP 341 (392)
Q Consensus 280 ~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~----~---~~~~v~C~~----------~~~~fg-~~~~~v~~~~~~~ 341 (392)
++.++..+|+||||+++++|.+++++|.+++++ . +.|.++|.. +.+.|+ |..+.++++++..
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~ 343 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLV 343 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEE
Confidence 344468899999999999999999999999997 3 678899984 334788 8999999999855
Q ss_pred cccccccCe-eeeCCcccccC-CcchhHHHHHHHhhcceEEEEecC-Ccc
Q 016295 342 EKVCQQIGL-CAFNGAEYVRL-GIPITRVLFVLNVRLAMQLVYSLG-SCR 388 (392)
Q Consensus 342 ~~~~~~~~~-C~~~~~~~~~~-~~~~~g~~fg~~~lr~~y~VfD~e-~~R 388 (392)
.. ..... | ++....... ..+++|.+| +|+.+++||++ ++|
T Consensus 344 ~~--~~~~~~C-l~~~~~~~~~~~~ilG~~~----~~~~~~~~D~~~~~r 386 (398)
T KOG1339|consen 344 EV--SDGGGVC-LAFFNGMDSGPLWILGDVF----QQNYLVVFDLGENSR 386 (398)
T ss_pred EE--CCCCCce-eeEEecCCCCceEEEchHH----hCCEEEEEeCCCCCE
Confidence 42 11112 8 554443332 245555555 88899999998 665
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-44 Score=338.78 Aligned_cols=270 Identities=43% Similarity=0.755 Sum_probs=225.6
Q ss_pred EEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCcc--ccCCCCCceeecCCEEEEEcCcceEEEEEEeeEEE
Q 016295 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSR--YKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE 162 (392)
Q Consensus 85 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~--y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~ 162 (392)
|+++|.||+|+|++.|++||||+++||++..|.. ..|..... |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999972 23333333 89999999999999999999999999999999999
Q ss_pred EceEEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEeC
Q 016295 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 242 (392)
Q Consensus 163 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~fG 242 (392)
+++.+++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999987766678899999999999999999999985322348999999
Q ss_pred ccCCCCccCceEEEeccc--cCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC-----ce
Q 016295 243 GVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GV 315 (392)
Q Consensus 243 gid~~~~~g~l~~~p~~~--~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-----~~ 315 (392)
|+|++++.+++.|+|+.. ..+|.|.+++|.++++..........++||||++++++|.+++++|++++++. ..
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~ 238 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGG 238 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccccCCc
Confidence 999999999999999988 78999999999999874222456779999999999999999999999999876 24
Q ss_pred EEEecCccccccCceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCccc
Q 016295 316 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCRQ 389 (392)
Q Consensus 316 ~~v~C~~~~~~fg~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R~ 389 (392)
+..+|... ..+....|.+ .+++|..|||++|+|||+|++|.
T Consensus 239 ~~~~~~~~-~~~p~i~f~f--------------------------------~~ilG~~fl~~~y~vfD~~~~~i 279 (283)
T cd05471 239 YGVDCSPC-DTLPDITFTF--------------------------------LWILGDVFLRNYYTVFDLDNNRI 279 (283)
T ss_pred EEEeCccc-CcCCCEEEEE--------------------------------EEEccHhhhhheEEEEeCCCCEE
Confidence 45555432 1222233322 23566667999999999999764
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.5e-45 Score=348.03 Aligned_cols=260 Identities=23% Similarity=0.402 Sum_probs=207.4
Q ss_pred eEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce-EEEEEEeeEEE
Q 016295 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (392)
Q Consensus 84 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 162 (392)
+|+++|.||||||++.|+|||||+++||+|..| +.|.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67899999998 58999999999
Q ss_pred EceE-EecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEEe
Q 016295 163 VGDV-VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 241 (392)
Q Consensus 163 ~g~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~f 241 (392)
+|+. .++++.||++....+ .+ ...+||||||++..+ +..+|..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~-~~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEG-LF--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCC-cc--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 899999999987654 23 267999999997665 55566554 3689999998743 234899999
Q ss_pred CccCCCCccCceEEEecccc----CceEEEeceEEEcceeeeee---cCCeeEEEeCCCCCcccCHHHHHHHHHHhCCC-
Q 016295 242 GGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE- 313 (392)
Q Consensus 242 Ggid~~~~~g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~---~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 313 (392)
||+|++ .|++.|+|+.+. .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 999999999763 68999999999999887532 23568999999999999999999999988642
Q ss_pred -------ceEEEe-cCc-----------cccccC-ceeeeeeecCcCccccccccCeeeeCCccccc-CCcchhHHHHHH
Q 016295 314 -------GVVSAE-CKL-----------VVSQYG-DLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVR-LGIPITRVLFVL 372 (392)
Q Consensus 314 -------~~~~v~-C~~-----------~~~~fg-~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~g~~fg~ 372 (392)
+.+.++ |.. +.+.|+ +..+++++.++.... ......| +++..... ... +++|.
T Consensus 202 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~-~~~~~~C-~~~~~~~~~~~~----~ilG~ 275 (299)
T cd05472 202 AAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPV-DDSSQVC-LAFAGTSDDGGL----SIIGN 275 (299)
T ss_pred ccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEe-cCCCCEE-EEEeCCCCCCCC----EEEch
Confidence 334454 842 455786 899999999986521 1234678 55554321 122 35677
Q ss_pred HhhcceEEEEecCCcc
Q 016295 373 NVRLAMQLVYSLGSCR 388 (392)
Q Consensus 373 ~~lr~~y~VfD~e~~R 388 (392)
.|||++|+|||+|++|
T Consensus 276 ~fl~~~~vvfD~~~~~ 291 (299)
T cd05472 276 VQQQTFRVVYDVAGGR 291 (299)
T ss_pred HHccceEEEEECCCCE
Confidence 7799999999999987
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.5e-44 Score=331.38 Aligned_cols=242 Identities=25% Similarity=0.407 Sum_probs=200.6
Q ss_pred eEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce-EEEEEEeeEEE
Q 016295 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (392)
Q Consensus 84 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 162 (392)
+|+++|+||||||++.|+|||||+++||+| +.|.+.|++|+ +.|.+++|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 45788999775 89999999999
Q ss_pred EceE--EecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCCCceEE
Q 016295 163 VGDV--VVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIV 240 (392)
Q Consensus 163 ~g~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~G~l~ 240 (392)
+++. .++++.||++..... +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998764 455678999999997654 778888776 89999998753334589999
Q ss_pred eCccCCCCccCceEEEeccc----cCceEEEeceEEEcceeeee--------ecCCeeEEEeCCCCCcccCHHHHHHHHH
Q 016295 241 FGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGCAAIVDSGTSLLAGPTPVVTEINH 308 (392)
Q Consensus 241 fGgid~~~~~g~l~~~p~~~----~~~w~v~~~~i~v~~~~~~~--------~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 308 (392)
|||+|++ |.|++.|+|+.. ..+|.|++++|+|+++.+.+ ......+++||||+++++|++++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----- 195 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----- 195 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----
Confidence 9999999 999999999976 57999999999999987642 24567899999999999999987
Q ss_pred HhCCCceEEEecCccccccC-ceeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCc
Q 016295 309 AIGGEGVVSAECKLVVSQYG-DLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSC 387 (392)
Q Consensus 309 ~i~~~~~~~v~C~~~~~~fg-~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~ 387 (392)
..+.+.|+ +..+.++++++.... .....| ++......... +++|..|||++|+|||+|++
T Consensus 196 ------------P~i~~~f~~~~~~~i~~~~y~~~~--~~~~~C-~~~~~~~~~~~----~ilG~~fl~~~~~vFD~~~~ 256 (265)
T cd05476 196 ------------PDLTLHFDGGADLELPPENYFVDV--GEGVVC-LAILSSSSGGV----SILGNIQQQNFLVEYDLENS 256 (265)
T ss_pred ------------CCEEEEECCCCEEEeCcccEEEEC--CCCCEE-EEEecCCCCCc----EEEChhhcccEEEEEECCCC
Confidence 45777898 899999999986532 234688 66554322333 35566669999999999999
Q ss_pred cc
Q 016295 388 RQ 389 (392)
Q Consensus 388 R~ 389 (392)
|.
T Consensus 257 ~i 258 (265)
T cd05476 257 RL 258 (265)
T ss_pred EE
Confidence 84
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=9.4e-43 Score=324.35 Aligned_cols=251 Identities=21% Similarity=0.317 Sum_probs=198.9
Q ss_pred ceEEEEEEEcCCCceEEEEeccCCCceEEeCC-CCCCCcccCcCccccCCCCCceeecCCEEEEEcCcc-eEEEEEEeeE
Q 016295 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSS-KCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG-SISGFFSQDN 160 (392)
Q Consensus 83 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~-~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g-~~~G~~~~D~ 160 (392)
++|+++|.||||||++.|+|||||+++||+|. .|. .| ++.|.+.|+++ .+.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 564 45 46799999966 4899999999
Q ss_pred EEEce----EEecCeEEEEEEEeCCcc-cccccceeeecCCccccccCCCCChHHHHHHcCCCCCceEEEEeCCCCCCCC
Q 016295 161 VEVGD----VVVKDQVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 235 (392)
Q Consensus 161 v~~g~----~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~ 235 (392)
|++++ ..++++.||++....... +.....+||||||+...+ ++.+|.++++| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 577899999997654321 234567999999997654 89999999999 99999999873 2
Q ss_pred CceEEeCccCCCCccCceEEEecccc---CceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHHHhCC
Q 016295 236 GGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 312 (392)
Q Consensus 236 ~G~l~fGgid~~~~~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~ 312 (392)
+|.|+|| |..++.|++.|+|+.+. .+|.|++.+|+|+++.. ......++|||||+++++|.+++
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 7899998 56678899999999874 79999999999999854 34567899999999999999876
Q ss_pred CceEEEecCccccccCc----eeeeeeecCcCccccccccCeeeeCCcccccCCcchhHHHHHHHhhcceEEEEecCCcc
Q 016295 313 EGVVSAECKLVVSQYGD----LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVRLGIPITRVLFVLNVRLAMQLVYSLGSCR 388 (392)
Q Consensus 313 ~~~~~v~C~~~~~~fg~----~~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~g~~fg~~~lr~~y~VfD~e~~R 388 (392)
+| .+.+.|++ +.+++|++++.... .....| ++........ ....+++|..|||++|+|||+|++|
T Consensus 197 -----~p--~i~~~f~~~~~~~~~~l~~~~y~~~~--~~~~~C-l~~~~~~~~~-~~~~~ilG~~~l~~~~~vfD~~~~r 265 (273)
T cd05475 197 -----FK--PLTLKFGKGWRTRLLEIPPENYLIIS--EKGNVC-LGILNGSEIG-LGNTNIIGDISMQGLMVIYDNEKQQ 265 (273)
T ss_pred -----cc--cEEEEECCCCceeEEEeCCCceEEEc--CCCCEE-EEEecCCCcC-CCceEEECceEEEeeEEEEECcCCE
Confidence 12 45667876 69999999885432 223578 5555432111 1112456777799999999999987
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.7e-36 Score=291.85 Aligned_cols=280 Identities=16% Similarity=0.200 Sum_probs=205.5
Q ss_pred EcCCCce-EEEEeccCCCceEEeCC----------CCCCCcccCcCccccCCC------CCceeecCCEEEEE-cCcce-
Q 016295 91 IGSPPQN-FSVIFDTGSSNLWVPSS----------KCYFSISCYFHSRYKSRK------SNTYTEIGKSCEIN-YGSGS- 151 (392)
Q Consensus 91 iGtP~q~-~~v~~DTGSs~~wv~~~----------~C~~~~~C~~~~~y~~~~------Sst~~~~~~~~~~~-Y~~g~- 151 (392)
+|+|-.+ +.|++||||+++||+|. .|. +..|..+..|++.+ ++.+....|.+... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 4778777 99999999999999665 454 55777666676542 22333334666554 77885
Q ss_pred EEEEEEeeEEEEce--------EEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcCCCCCceE
Q 016295 152 ISGFFSQDNVEVGD--------VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVF 223 (392)
Q Consensus 152 ~~G~~~~D~v~~g~--------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~f 223 (392)
..|.+++|+++|+. .+++++.|||+.......+ ...++||||||++.++ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999973 3789999999976532122 2347999999999887 5667776655 47999
Q ss_pred EEEeCCCCCCCCCceEEeCccCCCCcc------CceEEEecccc----CceEEEeceEEEcceeeeee--------cCCe
Q 016295 224 SFWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGGC 285 (392)
Q Consensus 224 s~~l~~~~~~~~~G~l~fGgid~~~~~------g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~~~--------~~~~ 285 (392)
|+||.+.. ..+|.|+||+.++.++. ++++|+|+... .+|.|++++|+||++.+.++ ....
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23899999999988875 78999999754 79999999999999877542 2245
Q ss_pred eEEEeCCCCCcccCHHHHHHHHHHhCCC----ceEEE------ecCc---------------cccccCc--eeeeeeecC
Q 016295 286 AAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSA------ECKL---------------VVSQYGD--LIWDLLVSG 338 (392)
Q Consensus 286 ~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~v------~C~~---------------~~~~fg~--~~~~v~~~~ 338 (392)
.++|||||+++++|.+++++|.+++.+. +.+.. .|-. +.++|++ ..+++++++
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~n 310 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGAN 310 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCc
Confidence 7999999999999999999999887532 11111 4421 4457865 999999999
Q ss_pred cCccccccccCeeeeCCccccc--CCcchhHHHHHHHhhcceEEEEecCCcc
Q 016295 339 LLPEKVCQQIGLCAFNGAEYVR--LGIPITRVLFVLNVRLAMQLVYSLGSCR 388 (392)
Q Consensus 339 ~~~~~~~~~~~~C~~~~~~~~~--~~~~~~g~~fg~~~lr~~y~VfD~e~~R 388 (392)
+.... .+...| ++...... ...+ ++|..+||++|+|||++++|
T Consensus 311 y~~~~--~~~~~C-l~f~~~~~~~~~~~----IlG~~~~~~~~vvyD~~~~r 355 (362)
T cd05489 311 SMVQV--KGGVAC-LAFVDGGSEPRPAV----VIGGHQMEDNLLVFDLEKSR 355 (362)
T ss_pred eEEEc--CCCcEE-EEEeeCCCCCCceE----EEeeheecceEEEEECCCCE
Confidence 86542 223579 65543321 1123 45666699999999999987
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=8.6e-24 Score=169.11 Aligned_cols=108 Identities=55% Similarity=0.882 Sum_probs=95.5
Q ss_pred EEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccc-cCCCCCceeecCCEEEEEcCcceEEEEEEeeEEEEce
Q 016295 87 GEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRY-KSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVEVGD 165 (392)
Q Consensus 87 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y-~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~~g~ 165 (392)
++|.||+|||++.|+|||||+++||++..|. ...|..++.| ++..|++++...+.|.+.|++|++.|.++.|+|++++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2334455566 9999999999999999999999999999999999999
Q ss_pred EEecCeEEEEEEEeCCcccccccceeeecC
Q 016295 166 VVVKDQVFIEATREGSLTFLLARFDGIIGL 195 (392)
Q Consensus 166 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 195 (392)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887644555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.87 E-value=3.6e-21 Score=165.02 Aligned_cols=136 Identities=35% Similarity=0.608 Sum_probs=106.1
Q ss_pred EEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeec----------------------CCE
Q 016295 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEI----------------------GKS 142 (392)
Q Consensus 85 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~----------------------~~~ 142 (392)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .+.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999976 2467888888887652 258
Q ss_pred EEEEcCcce-EEEEEEeeEEEEce-----EEecCeEEEEEEEeCCcccccccceeeecCCccccccCCCCChHHHHHHcC
Q 016295 143 CEINYGSGS-ISGFFSQDNVEVGD-----VVVKDQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG 216 (392)
Q Consensus 143 ~~~~Y~~g~-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 216 (392)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+. + ...+||||||+...+ ++.+|.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~--~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-F--YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-S--TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-C--cCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 79999999999986 46789999999987642 2 278999999998877 89999888
Q ss_pred CCCCceEEEEeCCCCCCCCCceEEeCc
Q 016295 217 LVSEEVFSFWLNRDPDAEEGGEIVFGG 243 (392)
Q Consensus 217 ~i~~~~fs~~l~~~~~~~~~G~l~fGg 243 (392)
..+.||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 68999999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.10 E-value=1.5e-10 Score=99.10 Aligned_cols=119 Identities=16% Similarity=0.256 Sum_probs=82.7
Q ss_pred ceEEEeceEEEcceeeeeecC-------CeeEEEeCCCCCcccCHHHHHHHHHHhCCC----c-------------eEEE
Q 016295 263 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGE----G-------------VVSA 318 (392)
Q Consensus 263 ~w~v~~~~i~v~~~~~~~~~~-------~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~-------------~~~v 318 (392)
+|.|++++|+||++.+.+... ...++|||||++++||+++++++.+++.+. + =|..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 478999999999999876543 467999999999999999999999998321 1 1222
Q ss_pred ec-----C-----ccccccC-ceeeeeeecCcCccccccccCeeeeCCccc--ccCCcchhHHHHHHHhhcceEEEEecC
Q 016295 319 EC-----K-----LVVSQYG-DLIWDLLVSGLLPEKVCQQIGLCAFNGAEY--VRLGIPITRVLFVLNVRLAMQLVYSLG 385 (392)
Q Consensus 319 ~C-----~-----~~~~~fg-~~~~~v~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~g~~fg~~~lr~~y~VfD~e 385 (392)
+. + .+.++|. |..+++++.++.... .+...| +.+... ...+..++|..+ +++.+++||+|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~--~~~~~C-la~~~~~~~~~~~~viG~~~----~~~~~v~fDl~ 153 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQV--SPGVFC-LAFVPSDADDDGVSVIGNFQ----QQNYHVVFDLE 153 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEE--CTTEEE-ESEEEETSTTSSSEEE-HHH----CCTEEEEEETT
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeec--cCCCEE-EEEEccCCCCCCcEEECHHH----hcCcEEEEECC
Confidence 22 1 1344675 788999998875443 234688 777766 345566666555 88899999999
Q ss_pred Ccc
Q 016295 386 SCR 388 (392)
Q Consensus 386 ~~R 388 (392)
++|
T Consensus 154 ~~~ 156 (161)
T PF14541_consen 154 NGR 156 (161)
T ss_dssp TTE
T ss_pred CCE
Confidence 987
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.33 E-value=1.6e-06 Score=66.85 Aligned_cols=92 Identities=15% Similarity=0.337 Sum_probs=66.4
Q ss_pred eEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce-EEEEEEeeEEE
Q 016295 84 QYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDNVE 162 (392)
Q Consensus 84 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~v~ 162 (392)
.|++++.|+. +++++++|||++.+|+...... .|.. . ........+..++|. .......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~~-----~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLGL-----P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcCC-----C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 5899999995 9999999999999999764321 1110 0 112345566777777 34556689999
Q ss_pred EceEEecCeEEEEEEEeCCcccccccceeeecCCc
Q 016295 163 VGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (392)
Q Consensus 163 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 197 (392)
+|+..++++.+.++..... +.+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999999887765431 4699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.76 E-value=0.00021 Score=57.81 Aligned_cols=101 Identities=18% Similarity=0.344 Sum_probs=68.5
Q ss_pred eeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEE-
Q 016295 75 LPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSIS- 153 (392)
Q Consensus 75 ~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~- 153 (392)
+++....++.|++++.|.. +++.+++|||++.+-++...-. .-..++. .......+.=++|...
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~------~~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLN------RLGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCcc------cCCceEEEEeCCCcEEE
Confidence 5667777899999999987 8999999999999988543110 0001111 1122334444566643
Q ss_pred EEEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCc
Q 016295 154 GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (392)
Q Consensus 154 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 197 (392)
..+.-|.+.+|++.++|..+.++..... .+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~~-------~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGAL-------SESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCcC-------CceEcCHHH
Confidence 4568899999999999999776643211 279999974
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=97.10 E-value=0.0037 Score=47.16 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=54.4
Q ss_pred EEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceE-EEEEEeeEEEEce
Q 016295 87 GEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSI-SGFFSQDNVEVGD 165 (392)
Q Consensus 87 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~-~G~~~~D~v~~g~ 165 (392)
+++.|+. +++++++|||++...+....+. .. ...+. .......+.-.+|.. ......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK------KL-GLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH------Hc-CCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3677876 8999999999998887543321 00 00110 011123333345543 3455666899999
Q ss_pred EEecCeEEEEEEEeCCcccccccceeeecCC
Q 016295 166 VVVKDQVFIEATREGSLTFLLARFDGIIGLG 196 (392)
Q Consensus 166 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 196 (392)
..+.+..+.+... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9988888776651 23469999974
No 30
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=96.46 E-value=0.014 Score=50.60 Aligned_cols=105 Identities=13% Similarity=0.235 Sum_probs=74.2
Q ss_pred CcceeeceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcc
Q 016295 71 DEDILPLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSG 150 (392)
Q Consensus 71 ~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g 150 (392)
+...+.|....++.|.++..|.. |+++.++|||-+.+-++...-. .-.++... .+.++.+.=++|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 44578899889999999999998 9999999999999888644311 11233322 234556666788
Q ss_pred eEE-EEEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCc
Q 016295 151 SIS-GFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (392)
Q Consensus 151 ~~~-G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 197 (392)
... ..+-.|.|.||++.++|..--++....- ..-+|||++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~L-------~~sLLGMSf 197 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAEDGAL-------DESLLGMSF 197 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheecCCcc-------chhhhhHHH
Confidence 864 5688999999999999887544433211 245677764
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.24 E-value=0.03 Score=45.40 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=60.0
Q ss_pred eceecCCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEE-EEcCcce--E
Q 016295 76 PLKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE-INYGSGS--I 152 (392)
Q Consensus 76 ~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~-~~Y~~g~--~ 152 (392)
|........+++++.|+. +++.+++|||++..++....+. .|.-. ... ...+. ...+.|. .
T Consensus 8 ~~~~~~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~-------~~~~~~~~~g~g~~~~ 71 (124)
T cd05479 8 PESFGKVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLM----RLI-------DKRFQGIAKGVGTQKI 71 (124)
T ss_pred cchhceeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCc----ccc-------CcceEEEEecCCCcEE
Confidence 333334567999999997 8999999999999988543321 11100 000 11111 1222222 4
Q ss_pred EEEEEeeEEEEceEEecCeEEEEEEEeCCcccccccceeeecCCc
Q 016295 153 SGFFSQDNVEVGDVVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (392)
Q Consensus 153 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 197 (392)
.|....+.+.+++...+ ..|.+.... ..|+|||+-+
T Consensus 72 ~g~~~~~~l~i~~~~~~-~~~~Vl~~~--------~~d~ILG~d~ 107 (124)
T cd05479 72 LGRIHLAQVKIGNLFLP-CSFTVLEDD--------DVDFLIGLDM 107 (124)
T ss_pred EeEEEEEEEEECCEEee-eEEEEECCC--------CcCEEecHHH
Confidence 67777888999998865 666554321 4699999864
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.03 E-value=0.082 Score=50.14 Aligned_cols=194 Identities=20% Similarity=0.243 Sum_probs=105.4
Q ss_pred EEEEEEEcCCC----ceEE-EEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEE--EEcCcceEEEEEE
Q 016295 85 YFGEIGIGSPP----QNFS-VIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCE--INYGSGSISGFFS 157 (392)
Q Consensus 85 Y~~~i~iGtP~----q~~~-v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~--~~Y~~g~~~G~~~ 157 (392)
-++.|+|=-|. |++. |++||||.-+=+..+.-... -.+......+ .+.+.. ..|++|..=|.+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 45666664443 6666 99999999877755432100 0001111111 112221 4577877779999
Q ss_pred eeEEEEceEEecCeEEEEEEEeC-----------C---cccccccceeeecCCccccccC----------------CC--
Q 016295 158 QDNVEVGDVVVKDQVFIEATREG-----------S---LTFLLARFDGIIGLGFREIAVG----------------DA-- 205 (392)
Q Consensus 158 ~D~v~~g~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GilGLg~~~~s~~----------------~~-- 205 (392)
+.+|++|+....+..+-++.... + .........||||+|.-..... ..
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999999866666665553320 0 0112446799999986533210 01
Q ss_pred -CChHHHHHHcCCCCCceEEEEeCCCC------------CCCCCceEEeCccCCC---CccCceEEEeccccCceEEEec
Q 016295 206 -VPVWDNMVEQGLVSEEVFSFWLNRDP------------DAEEGGEIVFGGVDPK---HFKGKHTYVPVTKKGYWQFELG 269 (392)
Q Consensus 206 -~~~~~~l~~~g~i~~~~fs~~l~~~~------------~~~~~G~l~fGgid~~---~~~g~l~~~p~~~~~~w~v~~~ 269 (392)
.+.--.+-+| +..|+..|-.+.+. .....|.|+|| |+.. ...+..+..+..+.++...
T Consensus 175 Ct~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFG-IgTQsNN~l~~~~~~~~~~~~G~~tt--- 248 (370)
T PF11925_consen 175 CTSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFG-IGTQSNNALPSGATVLTTDSNGDFTT--- 248 (370)
T ss_pred eecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEe-cCCcccCcccccceEEeecCCceEEE---
Confidence 0111112333 55676666444431 23358999998 3222 2233355556666665322
Q ss_pred eEEEcceeeeeecCCeeEEEeCCCCCcccCHH
Q 016295 270 DILIGNQSTGVCEGGCAAIVDSGTSLLAGPTP 301 (392)
Q Consensus 270 ~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~ 301 (392)
..+|+.. ....||||+...++|..
T Consensus 249 --~~~G~t~------~~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 --TFNGQTY------SASFFDSGSNGYFFPDS 272 (370)
T ss_pred --EecCcee------eeeeEecCCceeeccCC
Confidence 3444433 13489999999998854
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=95.29 E-value=0.14 Score=38.93 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=46.9
Q ss_pred EEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce---EEEEEEeeEE
Q 016295 85 YFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS---ISGFFSQDNV 161 (392)
Q Consensus 85 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~---~~G~~~~D~v 161 (392)
|++++.|+. +++.+++||||+..++....+. ....+. .......+.=.+|. +.|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899998 9999999999999999654431 001010 11123333334444 36766 7889
Q ss_pred EEceEEecCeEEEEEE
Q 016295 162 EVGDVVVKDQVFIEAT 177 (392)
Q Consensus 162 ~~g~~~~~~~~fg~~~ 177 (392)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998773 35554443
No 34
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=94.27 E-value=0.054 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.101 Sum_probs=19.6
Q ss_pred eEEEeeeeecCchhhhHHhhhhhhhhh
Q 016295 28 LRRIGLKKRRLDLHSLNAARITRKERY 54 (392)
Q Consensus 28 ~~~ipl~~~~~~~~~~~~~~~~~~~~~ 54 (392)
++||||+|.++.|..+.+.+.+.++++
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHHHHC
T ss_pred CEEEeccCCchHHHHHHHcCchHHHHH
Confidence 479999999999999999998888764
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.91 E-value=0.35 Score=36.30 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=47.2
Q ss_pred EEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEE-Eee-EEEEce
Q 016295 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFF-SQD-NVEVGD 165 (392)
Q Consensus 88 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~-~~D-~v~~g~ 165 (392)
.+.|.. +++++++|||++.+-++...+.. + . .......+.=.+|...-.+ ..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~~---~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGPK---Q-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhhh---c-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 456666 89999999999999997654420 0 0 1112223332333321111 123 699999
Q ss_pred EEecCeEEEEEEEeCCcccccccceeeecCCc
Q 016295 166 VVVKDQVFIEATREGSLTFLLARFDGIIGLGF 197 (392)
Q Consensus 166 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 197 (392)
..+.++ |.+.... .++|||+-+
T Consensus 63 ~~~~~~-~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSHS-FLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEEE-EEEEcCC---------CCcEechhh
Confidence 988854 5443321 278999864
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.68 E-value=0.39 Score=38.85 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=23.5
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
+.|||..+ .+++|||++...++++.++++-
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~lg 50 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKCG 50 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHcC
Confidence 34666543 6899999999999999888743
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.20 E-value=0.94 Score=32.70 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=29.4
Q ss_pred CCceEEEEEEEcCCCceEEEEeccCCCceEEeCCCC
Q 016295 81 MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (392)
Q Consensus 81 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 116 (392)
....+++++.||. +.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 3578999999998 999999999999998875543
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.44 E-value=2.2 Score=34.29 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=28.7
Q ss_pred ccCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHH
Q 016295 260 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 260 ~~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
..+++.+. +.|||++. .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34566555 46787643 799999999999999988876
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.52 E-value=1.8 Score=32.03 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=24.2
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
+.|||++ ..+++|||++...++++.++++-
T Consensus 3 v~vng~~-------~~~liDTGa~~~~i~~~~~~~l~ 32 (90)
T PF13650_consen 3 VKVNGKP-------VRFLIDTGASISVISRSLAKKLG 32 (90)
T ss_pred EEECCEE-------EEEEEcCCCCcEEECHHHHHHcC
Confidence 4566654 37999999999999999888773
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.17 E-value=1.9 Score=33.01 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=23.9
Q ss_pred EEEEEEcCCCceEEEEeccCCCceEEeCCCC
Q 016295 86 FGEIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (392)
Q Consensus 86 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 116 (392)
+.+|.|.. +++.+++||||+..-++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 56788887 899999999999988876543
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.29 E-value=3.2 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.3
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
+.|++..+ .+++|||++-.+++.+.++.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 45666544 599999999999999999888
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.15 E-value=3.7 Score=30.90 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=25.5
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 308 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 308 (392)
+.|||+.+ .+++|||++...++.+.+..+..
T Consensus 5 ~~Ing~~i-------~~lvDTGA~~svis~~~~~~lg~ 35 (91)
T cd05484 5 LLVNGKPL-------KFQLDTGSAITVISEKTWRKLGS 35 (91)
T ss_pred EEECCEEE-------EEEEcCCcceEEeCHHHHHHhCC
Confidence 56777755 69999999999999998887643
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.38 E-value=2 Score=32.90 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=12.3
Q ss_pred CccchhHHHHHHHHHHHHhhhhhcC
Q 016295 1 MEQKLLRSVFCLWVLASCLLLPASS 25 (392)
Q Consensus 1 m~~~~~~~~l~l~~~~~~~~~~~~~ 25 (392)
|.++..+++.+++++++++.+.+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 7776654444444444444444443
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=74.91 E-value=5 Score=29.95 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.6
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
+.+|++. ..+++|||++.+.++.+..+.+.
T Consensus 7 v~i~~~~-------~~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 7 VTINGQP-------VRFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEECCEE-------EEEEEECCCCcEEcCHHHHHHcC
Confidence 4566554 37999999999999998877663
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=74.89 E-value=4.2 Score=30.35 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.3
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
+.|||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 46777654 689999999999999998876
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=74.29 E-value=5.7 Score=32.07 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=43.7
Q ss_pred CceEEEEEEEcCCCceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce--EEEEEEee
Q 016295 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS--ISGFFSQD 159 (392)
Q Consensus 82 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~--~~G~~~~D 159 (392)
....|++++|+. +++++.+|||..-+-++.+ |. ..|+-.+.-|.. +. ...+|-|. +.|.+..-
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~-~a--~r~gL~~lid~r----~~------g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSKS-CA--ERCGLMRLIDKR----FA------GVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEHH-HH--HHTTGGGGEEGG----G-------EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCHH-HH--HHcCChhhcccc----cc------ccccCCCcCceeEEEEEE
Confidence 457899999998 9999999999999888533 31 144432222211 10 12334444 67888888
Q ss_pred EEEEceEEecCeEEEEE
Q 016295 160 NVEVGDVVVKDQVFIEA 176 (392)
Q Consensus 160 ~v~~g~~~~~~~~fg~~ 176 (392)
.+.+|+..++ ..|-+.
T Consensus 87 ~l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEEETTEEEE-EEEEEE
T ss_pred EEEECCEEEE-EEEEEe
Confidence 8999886655 444443
No 47
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=70.41 E-value=43 Score=27.40 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.1
Q ss_pred ceEEEEEEEcCCCceEEEEeccCCCceEEeC
Q 016295 83 AQYFGEIGIGSPPQNFSVIFDTGSSNLWVPS 113 (392)
Q Consensus 83 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~ 113 (392)
..-.+.+.|.+ ++..+++|+|++.-++..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45778899998 999999999999988854
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=68.81 E-value=8.5 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.0
Q ss_pred EEEEcCCCceEEEEeccCCCceEEeCCCC
Q 016295 88 EIGIGSPPQNFSVIFDTGSSNLWVPSSKC 116 (392)
Q Consensus 88 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 116 (392)
.+.|+. |.+++++|||+.++-+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 356665 999999999999999976543
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=61.91 E-value=17 Score=31.92 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=28.7
Q ss_pred cCceEEEeceEEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHHH
Q 016295 261 KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 261 ~~~w~v~~~~i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
++|+.++ ..|||+.+ ..++|||.|.+.++.+..+.+-
T Consensus 103 ~GHF~a~---~~VNGk~v-------~fLVDTGATsVal~~~dA~RlG 139 (215)
T COG3577 103 DGHFEAN---GRVNGKKV-------DFLVDTGATSVALNEEDARRLG 139 (215)
T ss_pred CCcEEEE---EEECCEEE-------EEEEecCcceeecCHHHHHHhC
Confidence 4555454 57888876 5899999999999998877763
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.56 E-value=10 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 304 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~ 304 (392)
+.++++.+ .+++|||+....+|.+.+.
T Consensus 10 v~i~g~~i-------~~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 10 VKINGKKI-------KALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEETTEEE-------EEEEETTBSSEEESSGGSS
T ss_pred EeECCEEE-------EEEEecCCCcceecccccc
Confidence 45666654 7999999999999986543
No 51
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=56.44 E-value=8.9 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred CeeEEEeCCCCCcc-cCHHHHHHH
Q 016295 284 GCAAIVDSGTSLLA-GPTPVVTEI 306 (392)
Q Consensus 284 ~~~aiiDTGt~~i~-lP~~~~~~i 306 (392)
...+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 35789999999886 999988775
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.50 E-value=17 Score=30.69 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred CceEEEEEEEcCCCceEEEEeccCCCceEEeCC
Q 016295 82 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSS 114 (392)
Q Consensus 82 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 114 (392)
+..+.+++.+- ..+++++|||||+.-++...
T Consensus 32 g~T~~v~l~~~--~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 32 GKTAIVQLNCK--GTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred CcEEEEEEeec--CcEEEEEEeCCCccceeehh
Confidence 44455555554 49999999999999888654
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.73 E-value=11 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEeCCCC-CcccCHHHHHHHHH
Q 016295 287 AIVDSGTS-LLAGPTPVVTEINH 308 (392)
Q Consensus 287 aiiDTGt~-~i~lP~~~~~~i~~ 308 (392)
.++|||.+ ++.+|.++++++..
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 48999999 99999999887743
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.67 E-value=22 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=22.4
Q ss_pred EEEcceeeeeecCCeeEEEeCCCCCcccCHHHHHHH
Q 016295 271 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 271 i~v~~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
+++||+.+ .|+||||+..+.++.+.++++
T Consensus 29 ~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 56777765 699999999999999988874
No 55
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=46.71 E-value=23 Score=26.85 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.4
Q ss_pred eeEEEeCCCCCcccCHHHHHHHH
Q 016295 285 CAAIVDSGTSLLAGPTPVVTEIN 307 (392)
Q Consensus 285 ~~aiiDTGt~~i~lP~~~~~~i~ 307 (392)
..+.+|||++...+|...++.+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46899999999999999888876
No 56
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=39.60 E-value=27 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCeeEEEeCCCCCcccCHHHH
Q 016295 283 GGCAAIVDSGTSLLAGPTPVV 303 (392)
Q Consensus 283 ~~~~aiiDTGt~~i~lP~~~~ 303 (392)
+...+++|||++.+++|.+..
T Consensus 10 q~~~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 10 QTFNVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred ceEEEEEeCCCCCEEEeCCCC
Confidence 456899999999999987643
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=36.24 E-value=44 Score=26.02 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=39.3
Q ss_pred EEEEEcCCCc----eEEEEeccCCCceE-EeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcce-EEEEEEeeE
Q 016295 87 GEIGIGSPPQ----NFSVIFDTGSSNLW-VPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGS-ISGFFSQDN 160 (392)
Q Consensus 87 ~~i~iGtP~q----~~~v~~DTGSs~~w-v~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~-~~G~~~~D~ 160 (392)
+++.|..|.| ++.+++|||.+..- ++...-. .-...+. ......-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~---------~~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPEL---------DQRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCcc---------cCcEEEecCCcEEEEEEEEEE
Confidence 5677887732 78899999999765 4422110 0011111 11234446665 455677889
Q ss_pred EEEceEEe
Q 016295 161 VEVGDVVV 168 (392)
Q Consensus 161 v~~g~~~~ 168 (392)
|.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 58
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=33.63 E-value=70 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=27.7
Q ss_pred cceeeceec--CCceEEE---EEEEcCC-------------CceEEEEeccCCCceEEeCC
Q 016295 72 EDILPLKNF--MDAQYFG---EIGIGSP-------------PQNFSVIFDTGSSNLWVPSS 114 (392)
Q Consensus 72 ~~~~~l~~~--~~~~Y~~---~i~iGtP-------------~q~~~v~~DTGSs~~wv~~~ 114 (392)
....|+... ....|.+ .|+||.- .....+++|||++.+.+|..
T Consensus 133 l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 133 VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 345666543 1344655 4788861 12345899999999999854
No 59
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=29.74 E-value=2.2e+02 Score=21.53 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=36.6
Q ss_pred ceEEEEeccCCCceEEeCCCCCCCcccCcCccccCCCCCceeecCCEEEEEcCcceEEEEEEeeEEE--EceEEecCeEE
Q 016295 96 QNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQDNVE--VGDVVVKDQVF 173 (392)
Q Consensus 96 q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~~G~~~~D~v~--~g~~~~~~~~f 173 (392)
.....++|||+..--+|.+.|.. . ....++.+.=++|+.-..++.-.++ +|..-.-...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~--------~----------~~~~~~~l~AANgt~I~tyG~~~l~ldlGlrr~~~w~F 69 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKK--------S----------LKPSPLTLQAANGTPIATYGTRSLTLDLGLRRPFAWNF 69 (89)
T ss_pred CCcEEEEeCCCceEeeccccccc--------c----------ccCCceEEEeCCCCeEeeeeeEEEEEEcCCCcEEeEEE
Confidence 35689999999999998776641 0 1123344445566644444444444 44432333556
Q ss_pred EEEEE
Q 016295 174 IEATR 178 (392)
Q Consensus 174 g~~~~ 178 (392)
-+++-
T Consensus 70 vvAdv 74 (89)
T cd06094 70 VVADV 74 (89)
T ss_pred EEcCC
Confidence 55543
No 60
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=28.31 E-value=73 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=31.6
Q ss_pred cceeeceecCCceEEEE---EEEcC-----CCceEEEEeccCCCceEEeCCCC
Q 016295 72 EDILPLKNFMDAQYFGE---IGIGS-----PPQNFSVIFDTGSSNLWVPSSKC 116 (392)
Q Consensus 72 ~~~~~l~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~wv~~~~C 116 (392)
...+|+.......|.+. |.||. ......+++|||++.+++|...+
T Consensus 169 ~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 169 LTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred eEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 34566665435566664 67776 24578899999999999987543
No 61
>PLN03146 aspartyl protease family protein; Provisional
Probab=27.02 E-value=89 Score=31.06 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=27.7
Q ss_pred ceeecee-cCCceEEEE---EEEcC-----CCce------EEEEeccCCCceEEeCC
Q 016295 73 DILPLKN-FMDAQYFGE---IGIGS-----PPQN------FSVIFDTGSSNLWVPSS 114 (392)
Q Consensus 73 ~~~~l~~-~~~~~Y~~~---i~iGt-----P~q~------~~v~~DTGSs~~wv~~~ 114 (392)
...||.. .....|+++ |+||. |+.. -.+++|||++.+++|..
T Consensus 268 ~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 268 VSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred eEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 3467753 224567764 68986 2221 25899999999999864
No 62
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=26.68 E-value=85 Score=29.55 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=27.1
Q ss_pred ceeeceecCCceEEEE---EEEcCC-----CceEEEEeccCCCceEEeCC
Q 016295 73 DILPLKNFMDAQYFGE---IGIGSP-----PQNFSVIFDTGSSNLWVPSS 114 (392)
Q Consensus 73 ~~~~l~~~~~~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~wv~~~ 114 (392)
..+|+.. ...|.++ |.||.. .+...+++|||++.+++|..
T Consensus 180 ~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 180 TYVPVTR--KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred EEEecCc--CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 3556643 3456554 688762 23457999999999999854
No 63
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=25.06 E-value=93 Score=28.67 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=29.1
Q ss_pred ceeeceecCC----ceEEE---EEEEcCC-------CceEEEEeccCCCceEEeCCCC
Q 016295 73 DILPLKNFMD----AQYFG---EIGIGSP-------PQNFSVIFDTGSSNLWVPSSKC 116 (392)
Q Consensus 73 ~~~~l~~~~~----~~Y~~---~i~iGtP-------~q~~~v~~DTGSs~~wv~~~~C 116 (392)
..+|+..... ..|.+ .|.||.. .....+++|||++.+++|...+
T Consensus 140 ~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~ 197 (295)
T cd05474 140 VTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIV 197 (295)
T ss_pred EEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHH
Confidence 4466665432 45555 4678752 2446799999999999986543
No 64
>PRK14758 hypothetical protein; Provisional
Probab=24.62 E-value=99 Score=17.40 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=10.9
Q ss_pred CccchhHHHHHHHHHHHHhhh
Q 016295 1 MEQKLLRSVFCLWVLASCLLL 21 (392)
Q Consensus 1 m~~~~~~~~l~l~~~~~~~~~ 21 (392)
|.+|-+.=++.+.+++|++.+
T Consensus 1 Mv~RYrFEliLivlIlCalia 21 (27)
T PRK14758 1 MVGRYRFEFILIILILCALIA 21 (27)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 566655545555555554433
No 65
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=22.79 E-value=92 Score=26.46 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.0
Q ss_pred CCeeEEEeCCCCCcccCHHHHHHHHHHh
Q 016295 283 GGCAAIVDSGTSLLAGPTPVVTEINHAI 310 (392)
Q Consensus 283 ~~~~aiiDTGt~~i~lP~~~~~~i~~~i 310 (392)
....+++|||++...+-.++.+.|-=..
T Consensus 44 t~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 44 TPIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred cEEEEEEeCCCccceeehhhHHhhCCcc
Confidence 3467999999999999999988875443
No 66
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=1.3e+02 Score=29.53 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=30.2
Q ss_pred ceeeceecCCceEEE---EEEEcC----CCce-----EEEEeccCCCceEEeCC
Q 016295 73 DILPLKNFMDAQYFG---EIGIGS----PPQN-----FSVIFDTGSSNLWVPSS 114 (392)
Q Consensus 73 ~~~~l~~~~~~~Y~~---~i~iGt----P~q~-----~~v~~DTGSs~~wv~~~ 114 (392)
..+||.+.....|.+ .|+||. ++-. ..+++|||++.+++|.+
T Consensus 232 ~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~ 285 (398)
T KOG1339|consen 232 TYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTS 285 (398)
T ss_pred EEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHH
Confidence 478888765446665 467996 3332 45799999999999864
No 67
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.28 E-value=90 Score=25.46 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.0
Q ss_pred CeeEEEeCCCCCcccCHHHHHHH
Q 016295 284 GCAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 284 ~~~aiiDTGt~~i~lP~~~~~~i 306 (392)
...++||||++-.++..+.+..+
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc
Confidence 34799999999999988876655
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.04 E-value=1.7e+02 Score=19.86 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.8
Q ss_pred eeEEEeCCCCCcccCHHHHHHH
Q 016295 285 CAAIVDSGTSLLAGPTPVVTEI 306 (392)
Q Consensus 285 ~~aiiDTGt~~i~lP~~~~~~i 306 (392)
..+++|+|++...+..+.++..
T Consensus 10 ~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 10 VRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEcCCCcccccCHHHHHHc
Confidence 3789999999999999887765
No 69
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=20.91 E-value=1.3e+02 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.8
Q ss_pred cceeeceec--CCceEEEE---EEEcCCCceE---------------EEEeccCCCceEEeCC
Q 016295 72 EDILPLKNF--MDAQYFGE---IGIGSPPQNF---------------SVIFDTGSSNLWVPSS 114 (392)
Q Consensus 72 ~~~~~l~~~--~~~~Y~~~---i~iGtP~q~~---------------~v~~DTGSs~~wv~~~ 114 (392)
....||... ....|+++ |+||. +.+ .+++|||++.+.+|..
T Consensus 186 ~~~tPl~~~~~~~~~Y~v~l~~IsVg~--~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 186 LSYTPLLTNPRKSGEYYIGVTSIAVNG--HAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSD 246 (362)
T ss_pred ccccccccCCCCCCceEEEEEEEEECC--EECCCCchhccccccCCCcEEEecCCceEEECHH
Confidence 345676643 12457665 88885 222 4899999999999864
No 70
>PF15240 Pro-rich: Proline-rich
Probab=20.62 E-value=67 Score=27.61 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhhhc
Q 016295 8 SVFCLWVLASCLLLPAS 24 (392)
Q Consensus 8 ~~l~l~~~~~~~~~~~~ 24 (392)
+|++|.++||+|.+|..
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 34444444444444443
Done!