Your job contains 1 sequence.
>016296
MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR
VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY
DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL
SDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEERA
RQEAAAKRAADEASRQGKEEEPLSNSQDATMTDNTNNTAAETTEKTADPMDEEKSLLERA
FAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFV
SSILTSLPGVDPNDPSVKDLIASLQGQPEVCP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016296
(392 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2121269 - symbol:RPN10 "regulatory particle no... 950 1.6e-95 1
DICTYBASE|DDB_G0275775 - symbol:psmD4 "ubiquitin interact... 552 1.5e-64 3
UNIPROTKB|Q58DA0 - symbol:PSMD4 "26S proteasome non-ATPas... 532 1.3e-61 2
MGI|MGI:1201670 - symbol:Psmd4 "proteasome (prosome, macr... 532 1.6e-61 2
UNIPROTKB|Q5VWC4 - symbol:PSMD4 "26S proteasome non-ATPas... 532 2.0e-61 2
UNIPROTKB|F1PRW0 - symbol:PSMD4 "Uncharacterized protein"... 532 2.0e-61 2
UNIPROTKB|P55036 - symbol:PSMD4 "26S proteasome non-ATPas... 532 2.0e-61 2
UNIPROTKB|Q32YV9 - symbol:PSMD4 "Uncharacterized protein"... 532 4.2e-61 2
UNIPROTKB|O88321 - symbol:Psmd4 "Proteasome (Prosome, mac... 532 5.4e-61 2
RGD|621109 - symbol:Psmd4 "proteasome (prosome, macropain... 532 5.4e-61 2
ZFIN|ZDB-GENE-040625-104 - symbol:psmd4a "proteasome (pro... 527 1.4e-60 2
CGD|CAL0005551 - symbol:RPN10 species:5476 "Candida albic... 579 2.6e-59 2
ZFIN|ZDB-GENE-050417-96 - symbol:psmd4b "proteasome (pros... 526 8.8e-59 2
UNIPROTKB|D4A9C9 - symbol:Psmd4 "Protein Psmd4" species:1... 532 2.0e-55 2
FB|FBgn0015283 - symbol:Rpn10 "Regulatory particle non-AT... 553 1.9e-53 1
UNIPROTKB|G4MS79 - symbol:MGG_04506 "26S proteasome non-A... 496 1.3e-51 2
UNIPROTKB|Q58D01 - symbol:PSMD4 "26S proteasome non-ATPas... 533 2.4e-51 1
UNIPROTKB|A2A3N6 - symbol:PIPSL "Putative PIP5K1A and PSM... 447 2.1e-50 2
POMBASE|SPAC637.10c - symbol:rpn10 "19S proteasome regula... 486 2.6e-49 2
SGD|S000001243 - symbol:RPN10 "Non-ATPase base subunit of... 510 6.7e-49 1
WB|WBGene00004466 - symbol:rpn-10 species:6239 "Caenorhab... 432 9.6e-44 2
UNIPROTKB|A6PVX3 - symbol:PSMD4 "26S proteasome non-ATPas... 439 2.2e-41 1
UNIPROTKB|H9KYX1 - symbol:H9KYX1 "Uncharacterized protein... 359 2.5e-41 2
UNIPROTKB|H9KYX2 - symbol:H9KYX2 "Uncharacterized protein... 334 8.4e-41 2
UNIPROTKB|H0Y3Y9 - symbol:PSMD4 "26S proteasome non-ATPas... 114 2.7e-10 2
>TAIR|locus:2121269 [details] [associations]
symbol:RPN10 "regulatory particle non-ATPase 10"
species:3702 "Arabidopsis thaliana" [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=ISS;IDA]
[GO:0000502 "proteasome complex" evidence=IDA;TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009651 "response to salt stress"
evidence=RCA;IMP] [GO:0009733 "response to auxin stimulus"
evidence=IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP;RCA;IMP] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0009744 "response to sucrose stimulus"
evidence=IMP] [GO:0010029 "regulation of seed germination"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0048366 "leaf development" evidence=IMP] [GO:0048455 "stamen
formation" evidence=IMP] [GO:0048528 "post-embryonic root
development" evidence=IMP] [GO:0048767 "root hair elongation"
evidence=RCA;IMP] [GO:0016020 "membrane" evidence=IDA] [GO:0009408
"response to heat" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA;IMP]
[GO:0043248 "proteasome assembly" evidence=RCA;IMP] [GO:0051788
"response to misfolded protein" evidence=RCA;IMP] [GO:0080129
"proteasome core complex assembly" evidence=RCA;IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0006623 "protein
targeting to vacuole" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007010 "cytoskeleton organization" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009266 "response to
temperature stimulus" evidence=RCA] [GO:0009407 "toxin catabolic
process" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0010498 "proteasomal protein catabolic process" evidence=RCA]
[GO:0046686 "response to cadmium ion" evidence=RCA] [GO:0001653
"peptide receptor activity" evidence=IDA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
GO:GO:0005829 GO:GO:0009737 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0009735 GO:GO:0009733 GO:GO:0043161
GO:GO:0016020 GO:GO:0009555 GO:GO:0009651 GO:GO:0009744
GO:GO:0010150 GO:GO:0006974 GO:GO:0048767 GO:GO:0009408
GO:GO:0000502 GO:GO:0043248 GO:GO:0010029 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AL035656
EMBL:AL161593 GO:GO:0051788 EMBL:AL035540 GO:GO:0048528
GO:GO:0001653 eggNOG:COG5148 EMBL:U33269 EMBL:AF360319
EMBL:AY113889 IPI:IPI00542443 PIR:T05691 RefSeq:NP_195575.1
UniGene:At.1553 ProteinModelPortal:P55034 SMR:P55034 IntAct:P55034
STRING:P55034 PaxDb:P55034 PRIDE:P55034 EnsemblPlants:AT4G38630.1
GeneID:830019 KEGG:ath:AT4G38630 TAIR:At4g38630
HOGENOM:HOG000165630 InParanoid:P55034 OMA:SDYQRNG PhylomeDB:P55034
ProtClustDB:CLSN2685445 Genevestigator:P55034 GermOnline:AT4G38630
GO:GO:0048455 PANTHER:PTHR10223 Uniprot:P55034
Length = 386
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 209/397 (52%), Positives = 258/397 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEATMICIDNSEWMRNGDYSPSRL+AQ +AV+L+CGAKTQSNPENTVGILTM GKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTTPT+DLGKILACMH LD+GGE+N+ A IQ+AQLALKHRQNKNQRQRIIVFAGSP+KY
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-KPEKLEALLAAVNNNDSSHLVHVPTGPNA 179
++K +E++GK+LKKNSV++DIVNFGEDDD KP+KLEALL AVNNND SH+VHVP+G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180
Query: 180 LSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSMXXXX 239
LSDVL+S+PVFT VDPNIDPELALALRVSM
Sbjct: 181 LSDVLLSTPVFTGDEGASGYVSAAAAAAAAGGDFDFG--VDPNIDPELALALRVSMEEER 238
Query: 240 XXXXXXXXXXXXXXXXQGKEEEPLSNSQXXXXXXXXXXXXXXXXXXXXXPMDEEKSLLER 299
+ K+ + S SQ PMDE+ +LL++
Sbjct: 239 ARQEAAAKKAADEAGQKDKDGDTASASQETVARTTDKNAE---------PMDEDSALLDQ 289
Query: 300 AFAMSMG-TSVSDTSMADADTSKAT------DEDKELALALQMSMQDDTKDPSNQSDMSK 352
A AMS+G ++S+ + D D + A +E E A + + S S +
Sbjct: 290 AIAMSVGDVNMSEAADEDQDLALALQMSMSGEESSEATGAGNNLLGNQAFISSVLSSLPG 349
Query: 353 VLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQPE 389
V + V +L SLP D + + ++ +S +G+ E
Sbjct: 350 VDPNDPAVKELLASLP--DESKRTEEEESSSKKGEDE 384
>DICTYBASE|DDB_G0275775 [details] [associations]
symbol:psmD4 "ubiquitin interacting motif (UIM)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
dictyBase:DDB_G0275775 GO:GO:0005634 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0004175 GO:GO:0000502 GO:GO:0006511
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
eggNOG:COG5148 OMA:SDYQRNG PANTHER:PTHR10223 RefSeq:XP_643477.1
STRING:Q553E0 EnsemblProtists:DDB0232981 GeneID:8620058
KEGG:ddi:DDB_G0275775 ProtClustDB:CLSZ2515584 Uniprot:Q553E0
Length = 349
Score = 552 (199.4 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 104/189 (55%), Positives = 141/189 (74%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
M LEAT++C+DNSEWMRNGD++PSR AQ DAV+LIC +KTQSNPE+ V I++M GK
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL T T +L KIL+ EL I G+++ + +Q+AQLAL+HRQN +Q RII F GSP+K
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180
++ + + K+LKKN VA+DI+NFGE + +KLEA + VNNND SHL+ VP GP+ L
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTENS-DKLEAFINDVNNNDESHLLTVPPGPHIL 179
Query: 181 SDVLISSPV 189
SD+++ SP+
Sbjct: 180 SDIILQSPI 188
Score = 91 (37.1 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 32/98 (32%), Positives = 45/98 (45%)
Query: 292 EEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMS 351
E+ L A A+SM T + S T+ D + Q Q T D S S
Sbjct: 259 EDDPELAEALALSMATDKMEVQ------SSTTNTDSQPP---QQQQQPPTDDTS-----S 304
Query: 352 KVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQPE 389
+ DQ F++S L SLPGVDPN +K+ + +L + E
Sbjct: 305 EAFKDQDFLNSTLNSLPGVDPN--RIKNALENLSKKDE 340
Score = 50 (22.7 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 290 MDEEKSLLER---AFAMSMGTSV-SDTSMADADTSKATD----EDKELALALQMSMQDD 340
++EEK ER A + G S S T+ A T D +D ELA AL +SM D
Sbjct: 217 LEEEKQRQERERKAREEANGGSTNSGTTTTTAPTESNMDVNFEDDPELAEALALSMATD 275
Score = 48 (22.0 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 324 DEDKELALALQMSMQDDT-KDPSNQSDMSKVLGDQSFVSSILTSLP---GVDPN---DPS 376
D D +LA+AL++S++++ + + + G + + T+ P +D N DP
Sbjct: 204 DTDPDLAMALKLSLEEEKQRQERERKAREEANGGSTNSGTTTTTAPTESNMDVNFEDDPE 263
Query: 377 VKDLIA 382
+ + +A
Sbjct: 264 LAEALA 269
Score = 45 (20.9 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 7/17 (41%), Positives = 15/17 (88%)
Query: 219 VDPNIDPELALALRVSM 235
++ + DP+LA+AL++S+
Sbjct: 201 INADTDPDLAMALKLSL 217
Score = 40 (19.1 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 224 DPELALALRVSM 235
DPELA AL +SM
Sbjct: 261 DPELAEALALSM 272
>UNIPROTKB|Q58DA0 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
eggNOG:COG5148 OrthoDB:EOG4JQ3Z0 GO:GO:0022624 HOGENOM:HOG000165630
OMA:SDYQRNG PANTHER:PTHR10223 EMBL:BT021555 EMBL:BT021697
EMBL:BT021757 EMBL:BT026173 EMBL:BC119964 IPI:IPI00704307
RefSeq:NP_001013616.2 UniGene:Bt.104130 UniGene:Bt.12570
ProteinModelPortal:Q58DA0 SMR:Q58DA0 STRING:Q58DA0 PRIDE:Q58DA0
Ensembl:ENSBTAT00000008019 GeneID:282016 KEGG:bta:282016 CTD:5710
GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425 InParanoid:Q58DA0
NextBio:20805881 ArrayExpress:Q58DA0 Uniprot:Q58DA0
Length = 382
Score = 532 (192.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 116 (45.9 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D
Sbjct: 281 MTEEEQI---AYAMQM-------SLQGAEFGQAESADMDASSAM------DTSEPTKEED 324
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 325 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
Score = 56 (24.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A A T ED + AL L+M++ + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATAGT-----EDSDDAL-LKMTISQQEFGRTGLPD 277
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 278 LSSMTEEEQIAYAMQMSLQGAEFGQAESADMDAS 311
>MGI|MGI:1201670 [details] [associations]
symbol:Psmd4 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0022624
"proteasome accessory complex" evidence=IDA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 MGI:MGI:1201670
Pfam:PF02809 GO:GO:0005737 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148 OrthoDB:EOG4JQ3Z0
GO:GO:0022624 HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
CTD:5710 GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425
ChiTaRS:PSMD4 EMBL:AF013099 EMBL:AB029090 EMBL:AB029142
EMBL:AB029143 EMBL:AB029144 EMBL:AB029145 EMBL:AB029146
EMBL:AF175574 EMBL:BC009005 IPI:IPI00128564 IPI:IPI00230569
IPI:IPI00230570 IPI:IPI00345779 IPI:IPI00381291 PIR:JC6535
RefSeq:NP_032977.1 UniGene:Mm.2261 ProteinModelPortal:O35226
SMR:O35226 IntAct:O35226 MINT:MINT-2841145 STRING:O35226
PhosphoSite:O35226 REPRODUCTION-2DPAGE:IPI00345779 PaxDb:O35226
PRIDE:O35226 Ensembl:ENSMUST00000071664 Ensembl:ENSMUST00000107237
Ensembl:ENSMUST00000117355 GeneID:19185 KEGG:mmu:19185
UCSC:uc008qhr.1 UCSC:uc008qht.1 UCSC:uc008qhu.1 UCSC:uc008qhv.1
NextBio:295886 Bgee:O35226 Genevestigator:O35226
GermOnline:ENSMUSG00000005625 Uniprot:O35226
Length = 376
Score = 532 (192.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 115 (45.5 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 318 DTSKATDEDKELALALQMSMQD----------------DTKDPSNQSDMSKVLGDQSFVS 361
D S T+E+ ++A A+QMS+Q DT DP + D V+ D F+
Sbjct: 277 DLSSMTEEE-QIAYAMQMSLQGTEFSQESADMDASSAMDTSDPVKEEDDYDVMQDPEFLQ 335
Query: 362 SILTSLPGVDPNDPSVKDLIASLQGQ 387
S+L +LPGVDPN+ +++ ++ +L Q
Sbjct: 336 SVLENLPGVDPNNAAIRSVMGALASQ 361
>UNIPROTKB|Q5VWC4 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 GO:GO:0000502 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 EMBL:CH471121 EMBL:AL592424 EMBL:AL391069
OrthoDB:EOG4JQ3Z0 HOGENOM:HOG000165630 OMA:SDYQRNG
PANTHER:PTHR10223 HOVERGEN:HBG000425 IPI:IPI00216247
UniGene:Hs.505059 HGNC:HGNC:9561 ChiTaRS:PSMD4 SMR:Q5VWC4
STRING:Q5VWC4 Ensembl:ENST00000368881 Uniprot:Q5VWC4
Length = 380
Score = 532 (192.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 114 (45.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D
Sbjct: 284 MTEEEQI---AYAMQM-------SLQGAEFGQAESADIDASSAM------DTSEPAKEED 327
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 328 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 365
Score = 59 (25.8 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T D D L L + +S Q+ + + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATTGTEGERDSDDAL-LKMTISQQEFGR--TGLPD 280
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 281 LSSMTEEEQIAYAMQMSLQGAEFGQAESADIDAS 314
>UNIPROTKB|F1PRW0 [details] [associations]
symbol:PSMD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
OMA:SDYQRNG PANTHER:PTHR10223 CTD:5710 GeneTree:ENSGT00530000064050
EMBL:AAEX03011056 RefSeq:NP_001130036.1 Ensembl:ENSCAFT00000019980
GeneID:100192385 KEGG:cfa:100192385 Uniprot:F1PRW0
Length = 377
Score = 532 (192.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 114 (45.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D
Sbjct: 281 MTEEEQI---AYAMQM-------SLQGAEFGQAESADIDASSAM------DTSEPAKEED 324
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 325 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
Score = 57 (25.1 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T+ A D D L L + +S Q+ + S D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIA---TAGAEDSDDAL-LKMTISQQEFGR--SGLPD 277
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 278 LSSMTEEEQIAYAMQMSLQGAEFGQAESADIDAS 311
>UNIPROTKB|P55036 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 Pfam:PF02809 GO:GO:0005829
Reactome:REACT_111102 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0044281 GO:GO:0000082
GO:GO:0051436 KO:K03029 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 GO:GO:0000216 GO:GO:0000209 GO:GO:0000084
EMBL:CH471121 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AL592424 EMBL:AL391069 eggNOG:COG5148
OrthoDB:EOG4JQ3Z0 GO:GO:0022624 HOGENOM:HOG000165630
PANTHER:PTHR10223 CTD:5710 HOVERGEN:HBG000425 EMBL:U51007
EMBL:U24704 EMBL:AB033605 EMBL:BC002365 EMBL:BC072008 EMBL:U72664
IPI:IPI00022694 IPI:IPI00216247 PIR:S63671 RefSeq:NP_002801.1
UniGene:Hs.505059 PDB:1P9C PDB:1P9D PDB:1UEL PDB:1YX4 PDB:1YX5
PDB:1YX6 PDB:2KDE PDB:2KDF PDBsum:1P9C PDBsum:1P9D PDBsum:1UEL
PDBsum:1YX4 PDBsum:1YX5 PDBsum:1YX6 PDBsum:2KDE PDBsum:2KDF
ProteinModelPortal:P55036 SMR:P55036 IntAct:P55036 MINT:MINT-105366
STRING:P55036 PhosphoSite:P55036 DMDM:1709796 PaxDb:P55036
PRIDE:P55036 DNASU:5710 Ensembl:ENST00000368884 GeneID:5710
KEGG:hsa:5710 UCSC:uc001exl.3 GeneCards:GC01P151227 HGNC:HGNC:9561
HPA:CAB047300 HPA:HPA039252 MIM:601648 neXtProt:NX_P55036
PharmGKB:PA33907 PhylomeDB:P55036 ChiTaRS:PSMD4
EvolutionaryTrace:P55036 GenomeRNAi:5710 NextBio:22186
ArrayExpress:P55036 Bgee:P55036 CleanEx:HS_PSMD4
Genevestigator:P55036 GermOnline:ENSG00000159352 Uniprot:P55036
Length = 377
Score = 532 (192.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 114 (45.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D
Sbjct: 281 MTEEEQI---AYAMQM-------SLQGAEFGQAESADIDASSAM------DTSEPAKEED 324
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 325 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
Score = 52 (23.4 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T ED + AL L+M++ + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATTGT-----EDSDDAL-LKMTISQQEFGRTGLPD 277
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 278 LSSMTEEEQIAYAMQMSLQGAEFGQAESADIDAS 311
>UNIPROTKB|Q32YV9 [details] [associations]
symbol:PSMD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
GO:GO:0000502 KO:K03029 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
CTD:5710 GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425
EMBL:CU138569 EMBL:AY704418 RefSeq:NP_001038000.1 UniGene:Ssc.49786
SMR:Q32YV9 STRING:Q32YV9 Ensembl:ENSSSCT00000007264 GeneID:733583
KEGG:ssc:733583 Uniprot:Q32YV9
Length = 377
Score = 532 (192.3 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 111 (44.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + A+ DT +P+ + D
Sbjct: 281 MTEEEQI---AYAMQM-------SLQGAEFGQAESADIDANSAM------DTSEPAKEED 324
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 325 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
Score = 49 (22.3 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T ED + AL L+M++ + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATTGT-----EDSDDAL-LKMTISQQEFGRTGLPD 277
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ A+
Sbjct: 278 LSSMTEEEQIAYAMQMSLQGAEFGQAESADIDAN 311
>UNIPROTKB|O88321 [details] [associations]
symbol:Psmd4 "Proteasome (Prosome, macropain) 26S subunit,
non-ATPase, 4, isoform CRA_a" species:10116 "Rattus norvegicus"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 Pfam:PF02809 RGD:621109 GO:GO:0000502
KO:K03029 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
EMBL:CH474015 eggNOG:COG5148 OrthoDB:EOG4JQ3Z0 HOGENOM:HOG000165630
OMA:SDYQRNG PANTHER:PTHR10223 CTD:5710 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:AC130969 EMBL:AB017188 IPI:IPI00208471
RefSeq:NP_112621.1 UniGene:Rn.3830 HSSP:P55036 SMR:O88321
IntAct:O88321 STRING:O88321 Ensembl:ENSRNOT00000028589 GeneID:83499
KEGG:rno:83499 InParanoid:O88321 NextBio:615908
Genevestigator:O88321 Uniprot:O88321
Length = 380
Score = 532 (192.3 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 110 (43.8 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P + D
Sbjct: 284 MTEEEQI---AYAMQM-------SLQGAEFGQAESGDIDASSAM------DTSEPVKEED 327
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 328 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 365
Score = 57 (25.1 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T D D L L + +S Q+ + + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDAL-LKMTISQQEFGR--AGLPD 280
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 281 LSSMTEEEQIAYAMQMSLQGAEFGQAESGDIDAS 314
Score = 48 (22.0 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 318 DTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPNDPSV 377
D S T+E+ ++A A+QMS+Q + D+ D S S++ TS P + +D V
Sbjct: 280 DLSSMTEEE-QIAYAMQMSLQGAEFGQAESGDI-----DAS--SAMDTSEPVKEEDDYDV 331
Query: 378 -KD---LIASLQGQPEVCP 392
+D L + L+ P V P
Sbjct: 332 MQDPEFLQSVLENLPGVDP 350
>RGD|621109 [details] [associations]
symbol:Psmd4 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 4" species:10116 "Rattus norvegicus" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0042044 "fluid transport" evidence=NAS]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 RGD:621109 GO:GO:0005737 GO:GO:0000502
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 PANTHER:PTHR10223
HOVERGEN:HBG000425 GO:GO:0042044 IPI:IPI00208471 UniGene:Rn.3830
HSSP:P55036 EMBL:AF175575 EMBL:BC060559 SMR:Q9ESH1 IntAct:Q9ESH1
STRING:Q9ESH1 UCSC:RGD:621109 InParanoid:Q9ESH1
Genevestigator:Q9ESH1 Uniprot:Q9ESH1
Length = 377
Score = 532 (192.3 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 110 (43.8 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P + D
Sbjct: 281 MTEEEQI---AYAMQM-------SLQGAEFGQAESGDIDASSAM------DTSEPVKEED 324
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 325 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 362
Score = 50 (22.7 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T ED + AL L+M++ + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATPGT-----EDSDDAL-LKMTISQQEFGRAGLPD 277
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 278 LSSMTEEEQIAYAMQMSLQGAEFGQAESGDIDAS 311
Score = 48 (22.0 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 318 DTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPNDPSV 377
D S T+E+ ++A A+QMS+Q + D+ D S S++ TS P + +D V
Sbjct: 277 DLSSMTEEE-QIAYAMQMSLQGAEFGQAESGDI-----DAS--SAMDTSEPVKEEDDYDV 328
Query: 378 -KD---LIASLQGQPEVCP 392
+D L + L+ P V P
Sbjct: 329 MQDPEFLQSVLENLPGVDP 347
>ZFIN|ZDB-GENE-040625-104 [details] [associations]
symbol:psmd4a "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 4a" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 Pfam:PF02809 ZFIN:ZDB-GENE-040625-104 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
HOGENOM:HOG000165630 PANTHER:PTHR10223 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:CU855694 EMBL:BC071482 IPI:IPI00501777
RefSeq:NP_001002112.1 UniGene:Dr.77193 SMR:Q6IQC6 STRING:Q6IQC6
Ensembl:ENSDART00000104063 GeneID:415202 KEGG:dre:415202 CTD:415202
InParanoid:Q6IQC6 NextBio:20818871 Uniprot:Q6IQC6
Length = 372
Score = 527 (190.6 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 113/237 (47%), Positives = 154/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++TM
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITMANN-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G+++ GI+VA LALKHRQ KN + RI+ F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHAVQPLGKISFCTGIRVAHLALKHRQGKNHKMRIVAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N + SHLV VP GP+
Sbjct: 120 NEKDLVKMAKRLKKEKVNVDIINFGEEEMNT-EKLTAFVNTLNGKEGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D L+SSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALLSSPILAGEGGTMIGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 111 (44.1 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 303 MSMGTSVSDTSMADADTSKATDEDKELALALQMSMQD-------DTKDP-----SNQSDM 350
+ M S ++ +A + E++++A A+QMS+ DT P S + D
Sbjct: 261 LKMSASQPESGVAALPDFSSMTEEEQIAYAMQMSLAGGEFGESMDTGAPIDTAESKEEDD 320
Query: 351 SKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 321 YDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 357
>CGD|CAL0005551 [details] [associations]
symbol:RPN10 species:5476 "Candida albicans" [GO:0031593
"polyubiquitin binding" evidence=IEA] [GO:0005198 "structural
molecule activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0042177 "negative regulation of protein catabolic
process" evidence=IEA] InterPro:IPR002035 InterPro:IPR027040
PROSITE:PS50234 SMART:SM00327 CGD:CAL0005551 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 EMBL:AACQ01000107
EMBL:AACQ01000110 eggNOG:COG5148 PANTHER:PTHR10223
RefSeq:XP_714135.1 RefSeq:XP_714273.1 ProteinModelPortal:Q59X29
STRING:Q59X29 GeneID:3644080 GeneID:3644200 KEGG:cal:CaO19.11583
KEGG:cal:CaO19.4102 Uniprot:Q59X29
Length = 279
Score = 579 (208.9 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 121/235 (51%), Positives = 153/235 (65%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEATMI IDNSE+MRNGD+ SR AQ A I K SNPENTVG+L GG G +
Sbjct: 1 MVLEATMIAIDNSEYMRNGDFLTSRYEAQLTATEFIFQNKINSNPENTVGLLAYGGSGPQ 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL+T TTD GKILA +HE I GE N ++GIQVA LALKHRQNK Q+QRII+F GSP+K
Sbjct: 61 VLSTLTTDFGKILAGVHETKIQGENNFSSGIQVAALALKHRQNKVQQQRIIIFVGSPIKE 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180
K +E + KK+KKN+VA+DI+NFGE+ KLE + +NN+D+SHLV + GP L
Sbjct: 121 SEKELEKLAKKMKKNNVAVDIINFGEEGVNTA-KLERFQSTINNHDNSHLVTISPGPRLL 179
Query: 181 SDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
+V+ SSP+ +DPN+DP+LA+ALR+S+
Sbjct: 180 YEVVASSPILVEDGGFGAGVSGGDMDFFGGAGGAGDI-IDPNMDPDLAMALRLSL 233
Score = 47 (21.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKE 328
++EEK+ ER A + + T + D SK + DK+
Sbjct: 233 LEEEKARQERE-AADRAKAEASTDLEKIDESKEDNNDKD 270
>ZFIN|ZDB-GENE-050417-96 [details] [associations]
symbol:psmd4b "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 4b" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 ZFIN:ZDB-GENE-050417-96 GO:GO:0000502 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148
HOGENOM:HOG000165630 OMA:SDYQRNG PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 HOVERGEN:HBG000425 EMBL:CU104697
EMBL:BC092825 IPI:IPI00495802 RefSeq:NP_001017624.1
UniGene:Dr.45739 SMR:Q561Y1 STRING:Q561Y1
Ensembl:ENSDART00000020654 GeneID:550287 KEGG:dre:550287 CTD:550287
InParanoid:Q561Y1 NextBio:20879548 Uniprot:Q561Y1
Length = 372
Score = 526 (190.2 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 114/237 (48%), Positives = 152/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV++IC +KT+SNPEN VG++TM
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIICHSKTRSNPENNVGLITMANN-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G ++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHAVQPRGVISFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
K + + K+LKK V++DI+NFGE++ EKL + +N + SHLV VP GP+
Sbjct: 120 QEKDLVKMAKRLKKEKVSVDIINFGEEEVNT-EKLTVFVNTLNGKEGVGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D L+SSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALLSSPIMAGEGGTIMGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 95 (38.5 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 320 SKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPNDPSVKD 379
S+A D D A A + ++D +D V+ D F+ S+L +LPGVDPN+ ++++
Sbjct: 297 SEAMDVDTAAAAAESEAPKEDEEDYD-------VMQDPEFLQSVLENLPGVDPNNEAIRN 349
Query: 380 LIASLQGQPEVCP 392
+ SL Q P
Sbjct: 350 AMGSLASQNRTKP 362
Score = 59 (25.8 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 312 TSMADADTSKATDEDKELALALQMSMQ 338
T+ A D S+ T ED+++A ALQMSMQ
Sbjct: 265 TAPALPDFSRMT-EDEQIAYALQMSMQ 290
Score = 45 (20.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 313 SMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFVSSILTSLPG 369
S ADA S T ++ E AL L+MS P+ D S++ D+ ++ S+ G
Sbjct: 242 SAADAGVSSPTADESENAL-LKMSTA-----PA-LPDFSRMTEDEQIAYALQMSMQG 291
>UNIPROTKB|D4A9C9 [details] [associations]
symbol:Psmd4 "Protein Psmd4" species:10116 "Rattus
norvegicus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] InterPro:IPR002035
InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327 Pfam:PF02809
RGD:621109 InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330
PANTHER:PTHR10223 EMBL:AC130969 IPI:IPI00561561
Ensembl:ENSRNOT00000047862 ArrayExpress:D4A9C9 Uniprot:D4A9C9
Length = 367
Score = 532 (192.3 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 115/237 (48%), Positives = 153/237 (64%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 224
Score = 57 (25.1 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T D D L L + +S Q+ + + D
Sbjct: 224 MEEQRQRQEEEARRAAAASAAEAGIATPGTEGERDSDDAL-LKMTISQQEFGR--AGLPD 280
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ ++ SL G + D+ AS
Sbjct: 281 LSSMTEEEQIAYAMQMSLQGAEFGQAESGDIDAS 314
Score = 56 (24.8 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 318 DTSKATDEDKELALALQMSMQ--DDTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPN-- 373
D S T+E+ ++A A+QMS+Q + + S D S + V +S P + P
Sbjct: 280 DLSSMTEEE-QIAYAMQMSLQGAEFGQAESGDIDASSAMDTSEPVKVRASSDPPIQPGLK 338
Query: 374 DPSVKDLI 381
P ++ LI
Sbjct: 339 SPCIQILI 346
>FB|FBgn0015283 [details] [associations]
symbol:Rpn10 "Regulatory particle non-ATPase 10" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=IDA;NAS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;NAS] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0007059 "chromosome segregation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 Pfam:PF02809 GO:GO:0007059 EMBL:AE014296
GO:GO:0006508 GO:GO:0006974 GO:GO:0004175 KO:K03029
InterPro:IPR003903 SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148
GO:GO:0008540 BRENDA:3.4.25.1 OMA:SDYQRNG PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 EMBL:S79502 EMBL:AY089333 PIR:S66528
RefSeq:NP_524204.1 ProteinModelPortal:P55035 SMR:P55035
DIP:DIP-22777N IntAct:P55035 MINT:MINT-1578442 STRING:P55035
PaxDb:P55035 EnsemblMetazoa:FBtr0078368 EnsemblMetazoa:FBtr0333453
GeneID:40388 KEGG:dme:Dmel_CG7619 CTD:40388 FlyBase:FBgn0015283
InParanoid:P55035 OrthoDB:EOG43R239 PhylomeDB:P55035
GenomeRNAi:40388 NextBio:818530 Bgee:P55035 GermOnline:CG7619
Uniprot:P55035
Length = 396
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 145/402 (36%), Positives = 204/402 (50%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TMIC DNS++ RNGDY P+RL Q D ++L+C K +SNPEN VG++T+ V
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL T T+D G+I + MH + GE+N+ GI++A L LKHRQ KN + RI+VF GSP+ +
Sbjct: 60 VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ + K+LKK V +DIV+FG D E L A + A+N D SHLV VP G +
Sbjct: 120 EEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-S 177
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSMXXX 238
LSD L+SSP+ VDPN DPELALALRVSM
Sbjct: 178 VLSDALLSSPIIQGEDGMGGAGLGGNVFEFG---------VDPNEDPELALALRVSMEEQ 228
Query: 239 XXXXXXXXXXXXXXXXXQGKEEEPLSNSQXXXXXXXXXXXXXXXXXXXXXPMDEEKSLLE 298
P + E+++L+
Sbjct: 229 RQRQESEQRRANPDGA------PPTGGDAGGGGGVSGSGPGNEESAGAENEANTEEAMLQ 282
Query: 299 RAFAMSMGTSVSDTSMADADTSKATDEDK-ELALALQMS-MQDDT---------KDPSN- 346
RA A+S T + ++ D + T+E++ A+ + M DD+ D +N
Sbjct: 283 RALALS--TETPEDNLPDF--ANMTEEEQIAFAMQMSMQDAPDDSVTQQAKRPKTDEANA 338
Query: 347 ----QSDMSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASL 384
D S+V+GD +F+ S+L +LPGVDP +V+D + SL
Sbjct: 339 PMDVDEDYSEVIGDPAFLQSVLENLPGVDPQSEAVRDAVGSL 380
>UNIPROTKB|G4MS79 [details] [associations]
symbol:MGG_04506 "26S proteasome non-ATPase regulatory
subunit 4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 GO:GO:0000502 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 EMBL:CM001231 PANTHER:PTHR10223
RefSeq:XP_003710949.1 ProteinModelPortal:G4MS79
EnsemblFungi:MGG_04506T0 GeneID:2678171 KEGG:mgr:MGG_04506
Uniprot:G4MS79
Length = 294
Score = 496 (179.7 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 111/238 (46%), Positives = 144/238 (60%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
M LEA MI +DNSE RNGDY+P+R AQADAV+++ T NPE++VG+++MGGK
Sbjct: 1 MPLEAVMIVVDNSESSRNGDYTPTRFDAQADAVNVLFQHVTNGNPESSVGLMSMGGKDPE 60
Query: 61 VLTTPTTDLGKILACMHELD--IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPV 118
VL T T+D GKIL +H + G ++A IQVA LALKHRQN QR RI+ F SPV
Sbjct: 61 VLVTLTSDQGKILEGLHRTKKKVSGSSHLATAIQVASLALKHRQNTTQRTRIVAFVCSPV 120
Query: 119 KYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND-SSHLVHVPTGP 177
++K + + KLKKN+V +D V FG+ DD +KLEA A V NN+ +SHLV +P
Sbjct: 121 SDEQKALVQLAGKLKKNNVTVDFVLFGDLDDDTSKKLEAFNAKVKNNEGNSHLVVIPPSG 180
Query: 178 NALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
N LSD LI++P+F DP DPELALALR+S+
Sbjct: 181 NLLSDQLIATPIF-----GEGAGSSAAAGGGGGGGDFGDLEFDPATDPELALALRMSL 233
Score = 57 (25.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 316 DADTSKATDEDKELALALQMSMQDDT----KDPSNQSDMSKVLGDQSFVSSILTSLPGVD 371
D + ATD ELALAL+MS++++ K+ +++ +K G +S V S P +D
Sbjct: 214 DLEFDPATDP--ELALALRMSLEEENARKEKEAKKEAEQAKKQGLES-VEEQDESAPLLD 270
Query: 372 PND-PS 376
+ PS
Sbjct: 271 KSGGPS 276
>UNIPROTKB|Q58D01 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9913 "Bos taurus" [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234 SMART:SM00327
Pfam:PF02809 GO:GO:0000502 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 HOGENOM:HOG000165630 PANTHER:PTHR10223
UniGene:Bt.104130 UniGene:Bt.12570 GeneTree:ENSGT00530000064050
HOVERGEN:HBG000425 EMBL:DAAA02007252 EMBL:BT021796 IPI:IPI00841753
SMR:Q58D01 STRING:Q58D01 Ensembl:ENSBTAT00000046341 Uniprot:Q58D01
Length = 316
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 131/331 (39%), Positives = 174/331 (52%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLE+TM+C+DNSE+MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CE 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 60 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS 178
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSMXXX 238
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 179 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSMEEQ 227
Query: 239 XXXXXXXXXXXXXXXXXQ-GKEEEPLSNSQXXXXXXXXXXXXXXXXXX-XXXPMDEEKSL 296
+ G +S M EE+ +
Sbjct: 228 RQRQEEEARRAAAASAAEAGIATAGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQI 287
Query: 297 LERAFAMSM---GTSVSDTSMADADTSKATD 324
A+AM M G AD D S A D
Sbjct: 288 ---AYAMQMSLQGAEFGQAESADMDASSAMD 315
>UNIPROTKB|A2A3N6 [details] [associations]
symbol:PIPSL "Putative PIP5K1A and PSMD4-like protein"
species:9606 "Homo sapiens" [GO:0016307 "phosphatidylinositol
phosphate kinase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR002035 InterPro:IPR002498 Pfam:PF01504
PROSITE:PS50234 PROSITE:PS51455 SMART:SM00327 GO:GO:0005737
PROSITE:PS50330 GO:GO:0046854 InterPro:IPR016034 SMART:SM00330
InterPro:IPR023610 PANTHER:PTHR23086 GO:GO:0016307 eggNOG:COG5148
EMBL:AL365510 IPI:IPI00419692 UniGene:Hs.149255
ProteinModelPortal:A2A3N6 SMR:A2A3N6 STRING:A2A3N6 PaxDb:A2A3N6
PRIDE:A2A3N6 UCSC:uc009xuj.2 GeneCards:GC10M095707 HGNC:HGNC:23733
neXtProt:NX_A2A3N6 InParanoid:A2A3N6 Genevestigator:A2A3N6
Uniprot:A2A3N6
Length = 862
Score = 447 (162.4 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 103/235 (43%), Positives = 138/235 (58%)
Query: 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL 62
L+ +DNSE+M NGD+ P+RL+AQ DAV+ +C +KT+SNPEN VG++T+ VL
Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDND-CEVL 546
Query: 63 TTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR 122
TT T D G+IL+ +H + G++ GI VA LALKHRQ N + RII F G+PV+ +
Sbjct: 547 TTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNE 606
Query: 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNAL 180
K + + K LKK V +DI+NFGE++ EKL A + +N D SHLV VP GP+ L
Sbjct: 607 KNLVKLAKCLKKEKVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS-L 664
Query: 181 SDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
+D LIS P+ VDP+ DPELAL LRV M
Sbjct: 665 ADALISFPILAGEGGAMMGLGASDFEFG----------VDPSADPELALVLRVFM 709
Score = 111 (44.1 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 340 DTKDPSNQSDMSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
DT +P+ + D V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 800 DTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAVGSLASQ 847
Score = 54 (24.1 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M+E++ E + S ++ +A T ED + AL L+M++ + D
Sbjct: 709 MEEQRQRQEEEARQAAAASAAEAGIATTGT-----EDSDDAL-LKMTISQQEFGHTGLPD 762
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIAS 383
+S + ++ V ++ SL G + D+ AS
Sbjct: 763 LSSMTEEEKIVCAMQMSLQGAEFGLAESADIDAS 796
Score = 40 (19.1 bits), Expect = 6.2e-43, Sum P(2) = 6.2e-43
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 305 MGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLGDQSFVSSIL 364
MG SD D S D ELAL L++ M++ + + + + + + I
Sbjct: 682 MGLGASDFEFG-VDPSA----DPELALVLRVFMEEQRQ--RQEEEARQAAAASAAEAGIA 734
Query: 365 TSLPGVDPNDPSVKDLIASLQ 385
T+ G + +D ++ + S Q
Sbjct: 735 TT--GTEDSDDALLKMTISQQ 753
>POMBASE|SPAC637.10c [details] [associations]
symbol:rpn10 "19S proteasome regulatory subunit Rpn10"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISO] [GO:0042177 "negative regulation of protein catabolic
process" evidence=IMP] [GO:0043130 "ubiquitin binding"
evidence=ISM] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 PomBase:SPAC637.10c GO:GO:0005829 GO:GO:0005634
GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006511
GO:GO:0042177 KO:K03029 InterPro:IPR003903 PROSITE:PS50330
GO:GO:0043130 eggNOG:COG5148 GO:GO:0008540 HOGENOM:HOG000165630
PANTHER:PTHR10223 PIR:T39002 RefSeq:NP_594628.1 PDB:2X5N
PDBsum:2X5N ProteinModelPortal:O94444 IntAct:O94444 STRING:O94444
PRIDE:O94444 EnsemblFungi:SPAC637.10c.1 GeneID:2543682
KEGG:spo:SPAC637.10c OMA:HRQNKVQ OrthoDB:EOG4GXJX7 NextBio:20804688
Uniprot:O94444
Length = 243
Score = 486 (176.1 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 96/189 (50%), Positives = 126/189 (66%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEATMI IDNSEWM NGDY P+R AQ D V +I K NPEN G++T+G +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL+T T D GK L+ MH+L + G GIQ+AQLALKHR+NK QRQRI+ F GSP+
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNAL 180
D K + + K++KKN+VAIDI++ GE + L+ + A N++DS HLV +P P L
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGELQN--ESALQHFIDAANSSDSCHLVSIPPSPQLL 178
Query: 181 SDVLISSPV 189
SD++ SP+
Sbjct: 179 SDLVNQSPI 187
Score = 45 (20.9 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 326 DKELALALQMSMQDD 340
D ELALAL++SM ++
Sbjct: 207 DVELALALELSMAEE 221
>SGD|S000001243 [details] [associations]
symbol:RPN10 "Non-ATPase base subunit of the regulatory
particle of the proteasome" species:4932 "Saccharomyces cerevisiae"
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA;IDA;IPI] [GO:0000502 "proteasome complex"
evidence=IEA;IMP] [GO:0005198 "structural molecule activity"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA;IMP] [GO:0031593 "polyubiquitin binding"
evidence=IDA] InterPro:IPR002035 InterPro:IPR027040 PROSITE:PS50234
SMART:SM00327 SGD:S000001243 GO:GO:0005198 EMBL:BK006934
GO:GO:0006511 EMBL:U00030 GO:GO:0031593 RefSeq:NP_012070.3
GeneID:856607 KEGG:sce:YHR200W KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 eggNOG:COG5148 GO:GO:0008540 PDB:4B4T
PDBsum:4B4T HOGENOM:HOG000165630 PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 OMA:HRQNKVQ OrthoDB:EOG4GXJX7
EMBL:D78022 EMBL:AY558289 PIR:S46677 RefSeq:NP_012072.3
ProteinModelPortal:P38886 SMR:P38886 DIP:DIP-2100N IntAct:P38886
MINT:MINT-557564 STRING:P38886 PaxDb:P38886 PeptideAtlas:P38886
EnsemblFungi:YHR200W GeneID:856609 KEGG:sce:YHR202W NextBio:982517
Genevestigator:P38886 GermOnline:YHR200W Uniprot:P38886
Length = 268
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 108/237 (45%), Positives = 147/237 (62%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MVLEAT++ IDNSE+ RNGD+ +R AQ D+V I AK SNPENTVG+++ G R
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VL+T T + GKILA +H+ I G++++A +Q+AQL LKHRQNK Q QRI+ F SP+
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN--NDSSHLVHVPTGPN 178
R + + K LKKN+VA+DI+NFGE + E L+ +AAVNN ++SHL+ V GP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNT-ELLDEFIAAVNNPQEETSHLLTVTPGPR 179
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L + + SSP+ VDP++DPELA+ALR+SM
Sbjct: 180 LLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>WB|WBGene00004466 [details] [associations]
symbol:rpn-10 species:6239 "Caenorhabditis elegans"
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IGI;IMP] [GO:0042006 "masculinization of
hermaphroditic germ-line" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IGI;IMP] InterPro:IPR002035 InterPro:IPR027040
SMART:SM00327 Pfam:PF02809 GO:GO:0008340 GO:GO:0016246
GO:GO:0007283 GO:GO:0006511 KO:K03029 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GO:GO:0040027 EMBL:FO080112
GO:GO:0042006 eggNOG:COG5148 HOGENOM:HOG000165630 PANTHER:PTHR10223
GeneTree:ENSGT00530000064050 OMA:HRQNKVQ RefSeq:NP_492809.1
ProteinModelPortal:O61742 SMR:O61742 IntAct:O61742 MINT:MINT-210565
STRING:O61742 PaxDb:O61742 EnsemblMetazoa:B0205.3.1
EnsemblMetazoa:B0205.3.2 GeneID:172977 KEGG:cel:CELE_B0205.3
UCSC:B0205.3.1 CTD:172977 WormBase:B0205.3 InParanoid:O61742
NextBio:877763 Uniprot:O61742
Length = 346
Score = 432 (157.1 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 95/238 (39%), Positives = 144/238 (60%)
Query: 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR 60
MV E+TMIC+DNSE+MRNGD+ P+RL++Q DAV+L+ K ++NPEN VGIL+M V+
Sbjct: 1 MVQESTMICVDNSEYMRNGDFQPTRLQSQQDAVNLVTQCKLRANPENAVGILSMANS-VQ 59
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK- 119
VL++ +T+ G+++ H ++ G+ N AGI++A LALKHRQN+N + R+++F GSP++
Sbjct: 60 VLSSLSTEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKHRQNRNHKMRVVLFIGSPLEE 119
Query: 120 YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSS--HLVHVPTGP 177
+ + I KK+KK V D++ FGE++ EK + +N + S L+ VP G
Sbjct: 120 IEMNELVKIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGSGSSLIVVPQG- 178
Query: 178 NALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
++L+D L+ S V +D DP+LALALRVSM
Sbjct: 179 SSLTDALLQSSVCKNEDGQAAFGGGGNGMDNAFG-------MDVENDPDLALALRVSM 229
Score = 46 (21.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 324 DEDKELALALQMSMQDD 340
+ D +LALAL++SM+++
Sbjct: 216 ENDPDLALALRVSMEEE 232
Score = 46 (21.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 290 MDEEKSLLERAFAMSMGTSVS--DTSMADADTSK--------ATDEDKELALALQMSMQD 339
M+EE++ A A + G + S D +A A + A E+++L AL++SMQ+
Sbjct: 229 MEEERARQAAAAAANGGAADSGADAEVAAAAAAVPLEEMDMGAMTEEQQLEWALRLSMQE 288
Query: 340 DT--KDPSNQSDMSKVLG 355
+ + P Q + V G
Sbjct: 289 NAPAEQPQVQHEQMDVDG 306
>UNIPROTKB|A6PVX3 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR027040 SMART:SM00327 GO:GO:0005737
GO:GO:0000502 EMBL:AL592424 EMBL:AL391069 HOGENOM:HOG000165630
PANTHER:PTHR10223 HOVERGEN:HBG000425 UniGene:Hs.505059
HGNC:HGNC:9561 ChiTaRS:PSMD4 IPI:IPI00853509 STRING:A6PVX3
Ensembl:ENST00000437736 Uniprot:A6PVX3
Length = 203
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 98/216 (45%), Positives = 132/216 (61%)
Query: 16 MRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILAC 75
MRNGD+ P+RL+AQ DAV+++C +KT+SNPEN VG++T+ VLTT T D G+IL+
Sbjct: 1 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSK 59
Query: 76 MHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN 135
+H + G++ GI+VA LALKHRQ KN + RII F GSPV+ + K + + K+LKK
Sbjct: 60 LHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKE 119
Query: 136 SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLISSPVFTXX 193
V +DI+NFGE++ EKL A + +N D SHLV VP GP+ L+D LISSP+
Sbjct: 120 KVNVDIINFGEEEVNT-EKLTAFVNTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGE 177
Query: 194 XXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELAL 229
VDP+ DPELAL
Sbjct: 178 GGAMLGLGASDFEFG----------VDPSADPELAL 203
>UNIPROTKB|H9KYX1 [details] [associations]
symbol:H9KYX1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0072661 "protein targeting to plasma membrane" evidence=IEA]
[GO:0097178 "ruffle assembly" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0008654 "phospholipid
biosynthetic process" evidence=IEA] [GO:0010761 "fibroblast
migration" evidence=IEA] [GO:0016308
"1-phosphatidylinositol-4-phosphate 5-kinase activity"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019900
"kinase binding" evidence=IEA] [GO:0030027 "lamellipodium"
evidence=IEA] [GO:0031532 "actin cytoskeleton reorganization"
evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0032863 "activation of Rac GTPase activity" evidence=IEA]
[GO:0048041 "focal adhesion assembly" evidence=IEA]
InterPro:IPR002035 InterPro:IPR002498 Pfam:PF01504 PROSITE:PS51455
SMART:SM00327 Pfam:PF02809 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 GO:GO:0046854 InterPro:IPR016034 SMART:SM00330
InterPro:IPR023610 PANTHER:PTHR23086 GeneTree:ENSGT00690000101870
GO:GO:0016307 EMBL:AADN02010480 EMBL:AADN02010481 EMBL:AADN02010482
EMBL:AADN02010483 Ensembl:ENSGALT00000001176 OMA:MADNCEV
Uniprot:H9KYX1
Length = 866
Score = 359 (131.4 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 88/215 (40%), Positives = 122/215 (56%)
Query: 24 SRLRAQADAVSLICGAKT-QSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIG 82
S L+ A++ + ++T Q + E G++T+G VLTT T D G+IL+ +H +
Sbjct: 513 SSLQRLESALNRVPLSRTPQHSREPMRGLITLGHSNCEVLTTLTPDTGRILSKLHTVQPK 572
Query: 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIV 142
G++ GI+VA LALKHRQ KN + RII F GSPV+ + K + + K+LKK V +DI+
Sbjct: 573 GKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDII 632
Query: 143 NFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLISSPVFTXXXXXXXXX 200
NFGE++ +KL A + +N D SHLV VP GP+ L+D LISSP+
Sbjct: 633 NFGEEE-ANTDKLTAFINTLNGKDGTGSHLVTVPPGPS-LADALISSPILAGEGGAMLGL 690
Query: 201 XXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
VDP+ DPELALALRVSM
Sbjct: 691 GASDFEFG----------VDPSADPELALALRVSM 715
Score = 116 (45.9 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A A+ A + D A+ DT +P+ + D
Sbjct: 772 MTEEEQI---AYAMQM--SLQGAEFAQAE---AAEVDSSTAM--------DTSEPTKEED 815
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 816 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 853
>UNIPROTKB|H9KYX2 [details] [associations]
symbol:H9KYX2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0008654 "phospholipid
biosynthetic process" evidence=IEA] [GO:0010761 "fibroblast
migration" evidence=IEA] [GO:0016308
"1-phosphatidylinositol-4-phosphate 5-kinase activity"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019900
"kinase binding" evidence=IEA] [GO:0030027 "lamellipodium"
evidence=IEA] [GO:0031532 "actin cytoskeleton reorganization"
evidence=IEA] [GO:0032587 "ruffle membrane" evidence=IEA]
[GO:0032863 "activation of Rac GTPase activity" evidence=IEA]
[GO:0048041 "focal adhesion assembly" evidence=IEA] [GO:0060326
"cell chemotaxis" evidence=IEA] [GO:0072661 "protein targeting to
plasma membrane" evidence=IEA] [GO:0097178 "ruffle assembly"
evidence=IEA] InterPro:IPR027040 Pfam:PF02809 InterPro:IPR003903
SMART:SM00726 PROSITE:PS50330 GeneTree:ENSGT00690000101870
PANTHER:PTHR10223 EMBL:AADN02010480 EMBL:AADN02010481
EMBL:AADN02010482 EMBL:AADN02010483 Ensembl:ENSGALT00000001187
Uniprot:H9KYX2
Length = 318
Score = 334 (122.6 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 79/177 (44%), Positives = 103/177 (58%)
Query: 61 VLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY 120
VLTT T D G+IL+ +H + G++ GI+VA LALKHRQ KN + RII F GSPV+
Sbjct: 4 VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 63
Query: 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178
+ K + + K+LKK V +DI+NFGE++ +KL A + +N D SHLV VP GP+
Sbjct: 64 NEKDLVKLAKRLKKEKVNVDIINFGEEE-ANTDKLTAFINTLNGKDGTGSHLVTVPPGPS 122
Query: 179 ALSDVLISSPVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPNIDPELALALRVSM 235
L+D LISSP+ VDP+ DPELALALRVSM
Sbjct: 123 -LADALISSPILAGEGGAMLGLGASDFEFG----------VDPSADPELALALRVSM 168
Score = 116 (45.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 32/98 (32%), Positives = 52/98 (53%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A A+ A + D A+ DT +P+ + D
Sbjct: 225 MTEEEQI---AYAMQM--SLQGAEFAQAE---AAEVDSSTAM--------DTSEPTKEED 268
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 269 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 306
>UNIPROTKB|H0Y3Y9 [details] [associations]
symbol:PSMD4 "26S proteasome non-ATPase regulatory subunit
4" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR027040 Pfam:PF02809 InterPro:IPR003903 SMART:SM00726
PROSITE:PS50330 EMBL:AL592424 EMBL:AL391069 PANTHER:PTHR10223
HGNC:HGNC:9561 ChiTaRS:PSMD4 ProteinModelPortal:H0Y3Y9 PRIDE:H0Y3Y9
Ensembl:ENST00000445776 Bgee:H0Y3Y9 Uniprot:H0Y3Y9
Length = 193
Score = 114 (45.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 290 MDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSD 349
M EE+ + A+AM M S+ A+ +A D + + A+ DT +P+ + D
Sbjct: 97 MTEEEQI---AYAMQM-------SLQGAEFGQAESADIDASSAM------DTSEPAKEED 140
Query: 350 MSKVLGDQSFVSSILTSLPGVDPNDPSVKDLIASLQGQ 387
V+ D F+ S+L +LPGVDPN+ ++++ + SL Q
Sbjct: 141 DYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQ 178
Score = 87 (35.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 115 GSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147
GSPV+ + K + + K+LKK V +DI+NFGE+
Sbjct: 2 GSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEE 34
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.129 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 392 324 0.00086 116 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 601 (64 KB)
Total size of DFA: 191 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.28u 0.10s 26.38t Elapsed: 00:00:01
Total cpu time: 26.29u 0.10s 26.39t Elapsed: 00:00:01
Start: Mon May 20 15:08:18 2013 End: Mon May 20 15:08:19 2013