Query 016296
Match_columns 392
No_of_seqs 235 out of 495
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884 26S proteasome regulat 100.0 1.1E-85 2.3E-90 612.0 25.2 240 1-249 1-241 (259)
2 COG5148 RPN10 26S proteasome r 100.0 5.7E-70 1.2E-74 498.2 23.2 233 1-250 1-233 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 1.7E-56 3.6E-61 413.6 23.5 187 1-188 1-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 100.0 2.5E-38 5.5E-43 293.7 14.9 169 9-187 1-172 (193)
5 KOG2807 RNA polymerase II tran 100.0 1.2E-30 2.6E-35 255.0 13.8 174 3-187 60-235 (378)
6 cd01453 vWA_transcription_fact 100.0 1.8E-29 4E-34 231.0 19.1 173 3-185 3-176 (183)
7 COG5151 SSL1 RNA polymerase II 99.9 1.4E-25 3.1E-30 218.5 13.1 177 3-187 87-266 (421)
8 PRK13685 hypothetical protein; 99.8 1.8E-18 3.9E-23 171.3 19.9 155 5-163 90-267 (326)
9 PF13519 VWA_2: von Willebrand 99.8 3.4E-17 7.3E-22 141.8 18.0 163 6-184 2-169 (172)
10 cd01467 vWA_BatA_type VWA BatA 99.7 5.1E-16 1.1E-20 138.5 19.7 151 5-163 4-168 (180)
11 cd01465 vWA_subgroup VWA subgr 99.7 1.7E-15 3.7E-20 133.2 19.5 145 5-160 2-151 (170)
12 cd01451 vWA_Magnesium_chelatas 99.7 6.6E-15 1.4E-19 133.1 20.0 151 6-163 3-158 (178)
13 cd01458 vWA_ku Ku70/Ku80 N-ter 99.6 4.2E-15 9.2E-20 138.7 16.0 145 4-148 2-174 (218)
14 cd01472 vWA_collagen von Wille 99.6 1.5E-14 3.3E-19 128.1 18.5 153 6-173 3-161 (164)
15 cd01480 vWA_collagen_alpha_1-V 99.6 3.4E-14 7.4E-19 129.4 17.9 146 5-159 4-160 (186)
16 cd01456 vWA_ywmD_type VWA ywmD 99.6 3.2E-14 6.9E-19 131.2 17.7 149 5-163 22-193 (206)
17 cd01466 vWA_C3HC4_type VWA C3H 99.6 2.1E-14 4.5E-19 127.3 14.9 142 6-163 3-148 (155)
18 cd00198 vWFA Von Willebrand fa 99.6 1.1E-13 2.3E-18 116.6 17.7 150 5-162 2-155 (161)
19 TIGR03436 acidobact_VWFA VWFA- 99.6 1.4E-13 2.9E-18 133.6 19.2 156 5-172 55-238 (296)
20 cd01471 vWA_micronemal_protein 99.6 2.2E-13 4.9E-18 122.9 17.7 146 6-159 3-158 (186)
21 smart00327 VWA von Willebrand 99.6 3.1E-13 6.6E-18 117.6 17.6 149 5-162 3-158 (177)
22 cd01469 vWA_integrins_alpha_su 99.5 4.6E-13 9.9E-18 121.3 18.4 161 6-176 3-171 (177)
23 cd01460 vWA_midasin VWA_Midasi 99.5 2.4E-13 5.3E-18 132.5 17.7 171 5-186 62-258 (266)
24 cd01470 vWA_complement_factors 99.5 3.1E-13 6.7E-18 123.7 17.2 160 5-175 2-189 (198)
25 cd01482 vWA_collagen_alphaI-XI 99.5 5.6E-13 1.2E-17 118.6 18.3 154 6-174 3-162 (164)
26 cd01461 vWA_interalpha_trypsin 99.5 5.7E-13 1.2E-17 117.0 18.0 156 5-178 4-164 (171)
27 cd01450 vWFA_subfamily_ECM Von 99.5 3.8E-13 8.1E-18 115.8 16.3 147 6-162 3-155 (161)
28 cd01463 vWA_VGCC_like VWA Volt 99.5 4.8E-13 1E-17 121.9 17.6 148 5-163 15-180 (190)
29 cd01477 vWA_F09G8-8_type VWA F 99.5 5.4E-13 1.2E-17 123.9 18.1 148 5-160 21-183 (193)
30 PRK13406 bchD magnesium chelat 99.5 8.5E-13 1.8E-17 140.9 20.0 166 5-184 403-579 (584)
31 cd01474 vWA_ATR ATR (Anthrax T 99.5 1.9E-12 4.1E-17 117.6 18.7 155 5-176 6-166 (185)
32 cd01473 vWA_CTRP CTRP for CS 99.4 2.6E-12 5.7E-17 118.7 15.8 146 6-159 3-159 (192)
33 cd01476 VWA_integrin_invertebr 99.4 1.2E-11 2.7E-16 108.8 18.2 145 6-159 3-154 (163)
34 cd01454 vWA_norD_type norD typ 99.4 1.1E-11 2.5E-16 111.1 17.9 147 5-159 2-166 (174)
35 TIGR00868 hCaCC calcium-activa 99.4 3E-12 6.4E-17 141.2 16.5 144 5-163 306-454 (863)
36 cd01475 vWA_Matrilin VWA_Matri 99.4 1.6E-11 3.4E-16 115.1 19.1 157 5-176 4-169 (224)
37 cd01464 vWA_subfamily VWA subf 99.4 9.8E-12 2.1E-16 111.8 16.0 146 4-160 4-159 (176)
38 cd01462 VWA_YIEM_type VWA YIEM 99.4 2.9E-11 6.3E-16 105.7 17.9 135 5-148 2-136 (152)
39 PF00092 VWA: von Willebrand f 99.4 2.3E-11 4.9E-16 106.6 15.7 166 6-183 2-174 (178)
40 TIGR02031 BchD-ChlD magnesium 99.4 2.8E-11 6E-16 129.4 19.2 151 5-163 409-574 (589)
41 TIGR02442 Cob-chelat-sub cobal 99.3 8.8E-11 1.9E-15 126.5 20.3 152 5-163 467-626 (633)
42 cd01455 vWA_F11C1-5a_type Von 99.3 2.7E-11 5.8E-16 113.1 14.1 155 6-175 3-175 (191)
43 PTZ00441 sporozoite surface pr 99.3 1.4E-10 3E-15 123.0 18.9 147 5-159 44-199 (576)
44 cd01481 vWA_collagen_alpha3-VI 99.2 7.7E-10 1.7E-14 99.9 18.9 153 5-174 2-163 (165)
45 PF13768 VWA_3: von Willebrand 99.2 2.9E-10 6.3E-15 99.6 14.5 143 5-163 2-150 (155)
46 cd01457 vWA_ORF176_type VWA OR 99.2 7.6E-10 1.7E-14 101.9 16.4 153 4-162 3-166 (199)
47 COG1240 ChlD Mg-chelatase subu 99.2 2E-09 4.3E-14 104.3 18.3 151 6-163 81-238 (261)
48 TIGR03788 marine_srt_targ mari 99.1 4.6E-09 9.9E-14 112.3 17.5 143 5-161 273-420 (596)
49 TIGR00627 tfb4 transcription f 98.9 1.4E-07 3.1E-12 92.9 17.7 175 5-186 4-219 (279)
50 PF03731 Ku_N: Ku70/Ku80 N-ter 98.7 5.7E-07 1.2E-11 84.0 14.8 140 5-144 1-172 (224)
51 TIGR00578 ku70 ATP-dependent D 98.5 5.1E-06 1.1E-10 89.3 17.9 144 3-146 10-183 (584)
52 PRK10997 yieM hypothetical pro 98.4 7.5E-06 1.6E-10 86.3 16.4 150 5-176 325-476 (487)
53 PF10138 vWA-TerF-like: vWA fo 98.4 2E-05 4.3E-10 74.5 16.4 171 5-185 3-184 (200)
54 cd01479 Sec24-like Sec24-like: 98.3 1.1E-05 2.3E-10 77.7 13.3 149 5-164 5-213 (244)
55 cd01468 trunk_domain trunk dom 98.3 3.8E-05 8.2E-10 73.2 15.9 149 5-163 5-215 (239)
56 cd01478 Sec23-like Sec23-like: 98.2 3.2E-05 6.9E-10 75.7 13.8 146 5-163 5-247 (267)
57 PF04811 Sec23_trunk: Sec23/Se 98.1 5E-05 1.1E-09 72.3 13.4 149 5-163 5-217 (243)
58 PF03850 Tfb4: Transcription f 98.1 0.00024 5.3E-09 70.1 17.7 173 5-185 3-216 (276)
59 COG4245 TerY Uncharacterized p 98.0 0.00011 2.5E-09 68.8 13.8 144 5-163 5-163 (207)
60 PLN00162 transport protein sec 97.7 0.00042 9E-09 76.9 13.8 146 5-163 126-368 (761)
61 PF05762 VWA_CoxE: VWA domain 97.6 0.0011 2.4E-08 62.9 13.5 124 5-143 59-186 (222)
62 COG2425 Uncharacterized protei 97.5 0.0019 4.1E-08 67.6 14.5 132 6-148 275-408 (437)
63 KOG2487 RNA polymerase II tran 97.2 0.0042 9.2E-08 61.3 12.2 169 5-186 25-237 (314)
64 smart00187 INB Integrin beta s 97.2 0.023 5E-07 59.3 17.9 159 6-177 102-324 (423)
65 PF11265 Med25_VWA: Mediator c 96.9 0.05 1.1E-06 52.6 15.6 156 4-166 14-202 (226)
66 PTZ00395 Sec24-related protein 96.8 0.0075 1.6E-07 69.9 11.2 134 5-147 954-1155(1560)
67 COG2304 Uncharacterized protei 96.6 0.032 7E-07 55.6 12.7 148 3-161 37-190 (399)
68 COG5242 TFB4 RNA polymerase II 96.3 0.21 4.5E-06 48.6 15.4 170 6-187 23-225 (296)
69 COG4867 Uncharacterized protei 96.3 0.063 1.4E-06 56.3 12.7 139 3-163 463-623 (652)
70 cd01459 vWA_copine_like VWA Co 96.1 0.35 7.5E-06 47.5 16.6 147 5-158 33-204 (254)
71 PF06707 DUF1194: Protein of u 95.9 0.29 6.2E-06 46.8 14.2 170 5-184 5-194 (205)
72 KOG1984 Vesicle coat complex C 95.5 0.13 2.8E-06 57.8 11.8 172 5-186 419-653 (1007)
73 PF02809 UIM: Ubiquitin intera 95.2 0.0054 1.2E-07 36.8 0.0 16 324-339 2-17 (18)
74 KOG2326 DNA-binding subunit of 95.0 0.43 9.4E-06 51.8 13.7 145 1-146 2-166 (669)
75 PF02809 UIM: Ubiquitin intera 94.7 0.0091 2E-07 35.9 0.1 16 222-237 2-17 (18)
76 smart00726 UIM Ubiquitin-inter 94.6 0.024 5.1E-07 37.1 1.8 20 222-241 1-20 (26)
77 COG1721 Uncharacterized conser 93.9 1.2 2.6E-05 46.1 13.6 132 5-147 226-362 (416)
78 KOG1986 Vesicle coat complex C 93.6 1.2 2.7E-05 49.2 13.4 144 6-162 124-354 (745)
79 PF00362 Integrin_beta: Integr 93.3 1.6 3.4E-05 46.0 13.4 164 6-182 105-332 (426)
80 PF07002 Copine: Copine; Inte 92.4 2.5 5.3E-05 38.2 11.6 120 22-145 9-146 (146)
81 KOG2353 L-type voltage-depende 92.3 1.1 2.4E-05 52.1 11.5 141 5-157 227-383 (1104)
82 smart00726 UIM Ubiquitin-inter 92.2 0.061 1.3E-06 35.2 0.8 19 324-342 1-19 (26)
83 PF11775 CobT_C: Cobalamin bio 90.1 9.6 0.00021 36.9 13.7 136 5-148 14-189 (219)
84 COG5028 Vesicle coat complex C 89.7 5.1 0.00011 45.1 12.9 146 5-163 278-478 (861)
85 TIGR01651 CobT cobaltochelatas 89.0 9.9 0.00022 41.8 14.3 59 88-148 499-569 (600)
86 PF11443 DUF2828: Domain of un 88.1 12 0.00026 40.6 14.3 135 3-146 340-484 (534)
87 KOG1327 Copine [Signal transdu 83.8 28 0.0006 37.9 14.2 144 6-159 288-462 (529)
88 PF09967 DUF2201: VWA-like dom 82.7 5.4 0.00012 34.8 7.1 92 6-118 1-94 (126)
89 cd03819 GT1_WavL_like This fam 82.1 46 0.00099 31.7 13.9 82 106-190 183-267 (355)
90 PF03853 YjeF_N: YjeF-related 81.4 8 0.00017 35.2 8.0 57 89-148 8-64 (169)
91 PF10221 DUF2151: Cell cycle a 81.3 18 0.00038 40.6 11.9 121 6-126 8-172 (695)
92 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.6 6.8 0.00015 28.9 5.3 37 110-146 3-39 (66)
93 TIGR00288 conserved hypothetic 76.8 54 0.0012 30.3 11.9 73 82-176 86-158 (160)
94 cd03811 GT1_WabH_like This fam 75.6 35 0.00075 31.3 10.6 55 106-164 187-244 (353)
95 COG0062 Uncharacterized conser 74.5 21 0.00045 34.2 8.9 71 89-162 32-102 (203)
96 KOG2327 DNA-binding subunit of 73.4 42 0.00092 37.0 11.8 142 3-146 18-184 (602)
97 PLN03049 pyridoxine (pyridoxam 72.2 31 0.00068 36.7 10.5 56 90-148 43-98 (462)
98 KOG1985 Vesicle coat complex C 71.8 50 0.0011 37.8 12.1 145 5-160 296-499 (887)
99 cd03820 GT1_amsD_like This fam 71.5 52 0.0011 30.2 10.7 77 106-189 176-255 (348)
100 cd04924 ACT_AK-Arch_2 ACT doma 70.7 13 0.00028 27.3 5.3 37 110-146 3-39 (66)
101 PF00731 AIRC: AIR carboxylase 70.7 23 0.0005 32.3 7.9 78 109-190 2-82 (150)
102 cd03817 GT1_UGDG_like This fam 70.2 48 0.0011 31.0 10.3 55 106-164 200-257 (374)
103 cd04919 ACT_AK-Hom3_2 ACT doma 69.9 13 0.00029 27.5 5.3 37 110-146 3-39 (66)
104 cd03794 GT1_wbuB_like This fam 69.1 42 0.00092 31.3 9.7 51 106-160 218-270 (394)
105 KOG2941 Beta-1,4-mannosyltrans 68.4 19 0.00041 37.7 7.5 63 103-175 8-70 (444)
106 cd03799 GT1_amsK_like This is 68.4 17 0.00038 34.4 7.0 79 106-190 177-259 (355)
107 PF03358 FMN_red: NADPH-depend 68.2 11 0.00024 32.7 5.2 57 108-164 1-70 (152)
108 cd03809 GT1_mtfB_like This fam 67.5 53 0.0012 30.9 10.1 42 107-148 194-238 (365)
109 cd04916 ACT_AKiii-YclM-BS_2 AC 67.3 16 0.00036 26.8 5.3 37 110-146 3-39 (66)
110 PF04285 DUF444: Protein of un 67.1 1.6E+02 0.0034 31.3 14.2 108 4-130 246-360 (421)
111 COG4548 NorD Nitric oxide redu 66.0 39 0.00085 37.1 9.5 136 5-148 448-602 (637)
112 PF12257 DUF3608: Protein of u 65.3 21 0.00045 35.9 7.0 65 84-148 202-272 (281)
113 PLN02948 phosphoribosylaminoim 65.1 90 0.0019 34.2 12.4 116 42-184 368-483 (577)
114 cd03813 GT1_like_3 This family 65.1 16 0.00035 38.1 6.6 58 106-163 291-351 (475)
115 cd05844 GT1_like_7 Glycosyltra 64.8 37 0.00081 32.7 8.6 54 106-163 186-242 (367)
116 cd03795 GT1_like_4 This family 64.6 33 0.00071 32.6 8.1 51 107-163 190-241 (357)
117 cd01840 SGNH_hydrolase_yrhL_li 64.0 96 0.0021 27.0 10.3 71 72-146 17-89 (150)
118 PRK15427 colanic acid biosynth 63.2 11 0.00025 38.5 5.0 53 108-164 222-277 (406)
119 cd03823 GT1_ExpE7_like This fa 63.1 1.3E+02 0.0027 28.1 11.6 43 106-148 189-232 (359)
120 PF00534 Glycos_transf_1: Glyc 62.8 35 0.00075 29.4 7.3 133 104-243 11-164 (172)
121 COG1432 Uncharacterized conser 62.5 22 0.00049 32.9 6.3 58 80-148 89-146 (181)
122 cd03821 GT1_Bme6_like This fam 62.4 40 0.00087 31.4 8.1 56 106-163 201-259 (375)
123 cd04868 ACT_AK-like ACT domain 61.0 26 0.00057 24.2 5.2 36 111-146 3-38 (60)
124 cd03801 GT1_YqgM_like This fam 60.7 36 0.00078 31.2 7.4 80 106-190 197-279 (374)
125 cd04962 GT1_like_5 This family 59.4 1.6E+02 0.0036 28.2 12.0 77 107-190 196-274 (371)
126 cd04918 ACT_AK1-AT_2 ACT domai 58.8 26 0.00057 26.6 5.1 38 110-148 3-40 (65)
127 TIGR03088 stp2 sugar transfera 58.4 1.4E+02 0.0029 29.3 11.4 77 107-190 193-276 (374)
128 cd03807 GT1_WbnK_like This fam 58.2 1.6E+02 0.0034 27.3 11.4 49 108-160 193-244 (365)
129 COG0528 PyrH Uridylate kinase 58.1 35 0.00076 33.5 7.0 47 6-58 6-56 (238)
130 TIGR02690 resist_ArsH arsenica 56.9 25 0.00054 33.9 5.7 71 103-175 22-99 (219)
131 PF00448 SRP54: SRP54-type pro 56.5 36 0.00077 31.8 6.6 55 109-163 2-56 (196)
132 PRK05325 hypothetical protein; 56.2 1.1E+02 0.0023 32.4 10.6 147 4-174 222-379 (401)
133 TIGR02877 spore_yhbH sporulati 55.3 1.1E+02 0.0025 31.9 10.5 145 4-173 202-355 (371)
134 PF02441 Flavoprotein: Flavopr 55.0 18 0.00038 31.2 4.0 34 108-143 1-34 (129)
135 TIGR00197 yjeF_nterm yjeF N-te 54.7 43 0.00094 31.5 6.9 52 90-146 31-82 (205)
136 PLN03050 pyridoxine (pyridoxam 53.9 42 0.00092 32.7 6.9 35 107-143 60-94 (246)
137 PF01882 DUF58: Protein of unk 53.7 28 0.0006 27.5 4.7 40 4-43 41-80 (86)
138 cd03798 GT1_wlbH_like This fam 53.6 54 0.0012 30.3 7.3 54 106-163 200-256 (377)
139 KOG2935 Ataxin 3/Josephin [Gen 51.0 13 0.00027 37.1 2.7 35 291-339 216-250 (315)
140 cd04921 ACT_AKi-HSDH-ThrA-like 50.6 47 0.001 25.5 5.5 37 110-146 3-39 (80)
141 cd04923 ACT_AK-LysC-DapG-like_ 50.4 43 0.00094 24.0 5.0 34 111-144 3-36 (63)
142 TIGR01162 purE phosphoribosyla 50.0 96 0.0021 28.6 8.1 41 121-163 10-50 (156)
143 cd04936 ACT_AKii-LysC-BS-like_ 49.6 45 0.00099 23.9 5.0 34 111-144 3-36 (63)
144 cd04951 GT1_WbdM_like This fam 49.1 52 0.0011 31.2 6.6 53 107-163 187-242 (360)
145 cd04892 ACT_AK-like_2 ACT doma 48.5 49 0.0011 23.3 5.0 37 110-146 2-38 (65)
146 cd06167 LabA_like LabA_like pr 48.4 63 0.0014 27.8 6.5 62 84-159 82-143 (149)
147 cd04915 ACT_AK-Ectoine_2 ACT d 47.9 52 0.0011 25.2 5.3 38 110-148 4-41 (66)
148 PF10293 DUF2405: Domain of un 47.7 27 0.00058 31.9 4.2 28 220-247 112-142 (157)
149 smart00275 G_alpha G protein a 47.7 2.9E+02 0.0063 28.1 12.0 51 4-58 209-261 (342)
150 PRK15045 cellulose biosynthesi 47.4 1.2E+02 0.0027 33.0 9.6 128 28-163 31-165 (519)
151 cd05009 SIS_GlmS_GlmD_2 SIS (S 46.6 58 0.0013 27.8 6.0 33 110-143 64-96 (153)
152 cd03814 GT1_like_2 This family 46.5 2.5E+02 0.0054 26.2 11.9 41 108-148 197-239 (364)
153 PF01936 NYN: NYN domain; Int 46.3 34 0.00075 29.0 4.4 50 84-144 78-127 (146)
154 COG2718 Uncharacterized conser 46.1 2.2E+02 0.0048 30.2 10.8 97 4-119 246-346 (423)
155 PF04244 DPRP: Deoxyribodipyri 45.1 4.9 0.00011 38.8 -1.1 72 103-186 37-111 (224)
156 cd03812 GT1_CapH_like This fam 44.9 1E+02 0.0023 29.3 8.0 132 106-244 190-338 (358)
157 cd03796 GT1_PIG-A_like This fa 44.8 1E+02 0.0022 30.9 8.2 57 106-164 191-248 (398)
158 PF00483 NTP_transferase: Nucl 44.8 74 0.0016 29.4 6.8 109 50-176 2-112 (248)
159 cd04949 GT1_gtfA_like This fam 43.9 2.7E+02 0.0058 27.1 10.9 52 108-163 204-258 (372)
160 cd03364 TOPRIM_DnaG_primases T 42.4 44 0.00096 26.2 4.2 37 107-144 43-79 (79)
161 TIGR03449 mycothiol_MshA UDP-N 41.4 3.4E+02 0.0074 26.9 11.3 57 107-163 218-280 (405)
162 PF13911 AhpC-TSA_2: AhpC/TSA 41.3 62 0.0013 26.9 5.2 51 125-184 2-52 (115)
163 PRK06756 flavodoxin; Provision 40.7 45 0.00098 29.0 4.4 40 108-147 2-41 (148)
164 PRK14179 bifunctional 5,10-met 40.4 3.5E+02 0.0076 27.2 11.1 72 111-185 37-110 (284)
165 PF00763 THF_DHG_CYH: Tetrahyd 40.4 2.4E+02 0.0051 24.2 8.8 69 107-178 30-100 (117)
166 cd03792 GT1_Trehalose_phosphor 40.3 2.1E+02 0.0046 28.2 9.6 84 106-189 188-276 (372)
167 PRK12553 ATP-dependent Clp pro 40.2 1.3E+02 0.0027 28.5 7.6 79 68-148 27-105 (207)
168 PRK08105 flavodoxin; Provision 39.9 35 0.00076 30.4 3.6 38 109-146 3-40 (149)
169 COG5148 RPN10 26S proteasome r 39.9 28 0.00061 33.4 3.1 34 349-382 167-215 (243)
170 COG3552 CoxE Protein containin 39.0 2.4E+02 0.0052 29.7 9.8 113 6-135 221-340 (395)
171 PF12646 DUF3783: Domain of un 38.0 89 0.0019 23.7 5.1 49 109-162 2-50 (58)
172 TIGR00493 clpP ATP-dependent C 37.7 1.6E+02 0.0036 27.4 7.9 69 78-148 28-96 (191)
173 PF13477 Glyco_trans_4_2: Glyc 37.7 70 0.0015 26.6 5.0 27 122-148 10-36 (139)
174 cd07017 S14_ClpP_2 Caseinolyti 37.6 1.5E+02 0.0034 26.8 7.5 68 79-148 12-79 (171)
175 PRK14177 bifunctional 5,10-met 37.3 4.3E+02 0.0093 26.6 11.1 87 95-185 23-111 (284)
176 PRK05569 flavodoxin; Provision 37.3 63 0.0014 27.7 4.7 40 109-148 3-42 (141)
177 TIGR02095 glgA glycogen/starch 37.0 1.4E+02 0.003 31.0 8.0 53 107-161 290-343 (473)
178 KOG1226 Integrin beta subunit 36.8 1E+02 0.0022 35.1 7.2 148 5-162 134-344 (783)
179 PRK10569 NAD(P)H-dependent FMN 36.8 70 0.0015 29.8 5.2 66 108-175 1-75 (191)
180 COG4907 Predicted membrane pro 36.6 16 0.00035 39.1 1.1 34 139-176 517-552 (595)
181 cd03805 GT1_ALG2_like This fam 36.6 1.6E+02 0.0034 28.8 7.9 55 107-161 210-274 (392)
182 PRK05568 flavodoxin; Provision 35.9 72 0.0016 27.3 4.9 40 109-148 3-42 (142)
183 TIGR03567 FMN_reduc_SsuE FMN r 35.5 1.9E+02 0.0042 25.9 7.8 38 109-146 1-40 (171)
184 PF13362 Toprim_3: Toprim doma 35.2 1.1E+02 0.0024 24.6 5.6 41 106-146 40-81 (96)
185 cd03822 GT1_ecORF704_like This 34.4 3.9E+02 0.0085 25.0 12.5 42 106-147 183-227 (366)
186 PRK09004 FMN-binding protein M 34.0 58 0.0013 28.9 4.1 36 109-144 3-38 (146)
187 TIGR00750 lao LAO/AO transport 33.9 1.6E+02 0.0035 29.1 7.5 52 97-148 23-74 (300)
188 PRK14194 bifunctional 5,10-met 33.9 5.2E+02 0.011 26.2 11.4 92 90-186 19-112 (301)
189 cd03808 GT1_cap1E_like This fa 33.7 3.8E+02 0.0082 24.6 12.5 42 107-148 187-231 (359)
190 PRK06703 flavodoxin; Provision 33.6 65 0.0014 28.1 4.3 39 109-147 3-41 (151)
191 PRK10307 putative glycosyl tra 32.8 1.2E+02 0.0026 30.5 6.6 52 108-163 229-282 (412)
192 PRK09271 flavodoxin; Provision 32.7 79 0.0017 28.2 4.8 39 108-146 1-39 (160)
193 PRK15484 lipopolysaccharide 1, 32.7 2.2E+02 0.0047 28.6 8.4 41 107-147 192-235 (380)
194 PRK10565 putative carbohydrate 32.7 1.5E+02 0.0033 31.9 7.6 40 107-148 60-99 (508)
195 cd04912 ACT_AKiii-LysC-EC-like 32.2 1.3E+02 0.0027 23.4 5.3 34 111-144 4-37 (75)
196 PF05679 CHGN: Chondroitin N-a 31.8 4.3E+02 0.0094 28.4 10.8 115 43-176 229-351 (499)
197 PRK03692 putative UDP-N-acetyl 31.7 1.8E+02 0.004 28.3 7.4 78 89-176 89-166 (243)
198 PLN02918 pyridoxine (pyridoxam 31.5 1.3E+02 0.0029 33.0 6.9 54 90-146 119-172 (544)
199 COG5271 MDN1 AAA ATPase contai 31.4 6.7E+02 0.014 32.8 12.7 144 5-164 4394-4549(4600)
200 PRK14512 ATP-dependent Clp pro 31.4 2.4E+02 0.0051 26.6 7.9 68 79-148 26-93 (197)
201 COG1553 DsrE Uncharacterized c 31.3 1.6E+02 0.0035 26.4 6.2 62 81-145 11-81 (126)
202 PF13662 Toprim_4: Toprim doma 30.5 32 0.0007 27.1 1.7 35 107-142 46-80 (81)
203 PF00574 CLP_protease: Clp pro 30.4 1.1E+02 0.0023 27.8 5.2 66 79-148 19-86 (182)
204 KOG3768 DEAD box RNA helicase 30.3 1.4E+02 0.003 33.5 6.7 95 5-99 3-101 (888)
205 COG1105 FruK Fructose-1-phosph 30.3 82 0.0018 32.1 4.8 111 49-177 130-244 (310)
206 TIGR02370 pyl_corrinoid methyl 30.1 3.2E+02 0.0069 25.4 8.5 84 82-174 49-142 (197)
207 PF03028 Dynein_heavy: Dynein 29.8 26 0.00056 38.8 1.3 38 111-148 119-156 (707)
208 KOG1198 Zinc-binding oxidoredu 29.2 1.7E+02 0.0038 29.9 7.1 64 79-148 124-193 (347)
209 PRK05749 3-deoxy-D-manno-octul 29.2 5.5E+02 0.012 26.0 10.7 52 109-162 234-285 (425)
210 cd06543 GH18_PF-ChiA-like PF-C 29.2 1.8E+02 0.0039 29.1 7.1 67 126-194 158-231 (294)
211 PF00117 GATase: Glutamine ami 29.1 59 0.0013 29.3 3.4 48 110-162 45-93 (192)
212 PF13727 CoA_binding_3: CoA-bi 29.1 2.4E+02 0.0052 24.2 7.1 81 87-174 86-175 (175)
213 KOG2199 Signal transducing ada 29.1 21 0.00046 37.6 0.5 19 324-342 164-182 (462)
214 cd04908 ACT_Bt0572_1 N-termina 29.1 1.1E+02 0.0023 23.0 4.3 32 108-143 2-33 (66)
215 PRK00411 cdc6 cell division co 29.0 3.9E+02 0.0084 26.8 9.5 92 85-185 120-217 (394)
216 PRK04155 chaperone protein Hch 29.0 2.5E+02 0.0055 28.1 8.0 26 121-146 75-100 (287)
217 KOG2585 Uncharacterized conser 29.0 2.8E+02 0.0061 29.8 8.6 52 110-164 268-319 (453)
218 cd04955 GT1_like_6 This family 29.0 2.1E+02 0.0047 27.1 7.3 39 109-148 194-233 (363)
219 PF00331 Glyco_hydro_10: Glyco 29.0 99 0.0022 31.0 5.2 115 13-147 87-212 (320)
220 cd03791 GT1_Glycogen_synthase_ 28.9 2.3E+02 0.005 29.0 8.0 54 106-161 294-348 (476)
221 PRK14169 bifunctional 5,10-met 28.7 6.2E+02 0.013 25.5 11.3 76 109-186 32-109 (282)
222 TIGR01753 flav_short flavodoxi 28.6 81 0.0018 26.5 3.9 38 110-147 1-38 (140)
223 cd04937 ACT_AKi-DapG-BS_2 ACT 28.4 1.4E+02 0.0031 22.2 4.9 34 110-143 3-36 (64)
224 PLN02726 dolichyl-phosphate be 28.2 4.8E+02 0.01 24.1 10.4 31 109-139 95-125 (243)
225 PF02635 DrsE: DsrE/DsrF-like 28.2 1.8E+02 0.0039 23.4 5.9 26 123-148 18-46 (122)
226 PF13768 VWA_3: von Willebrand 28.0 1.7E+02 0.0037 25.1 6.0 14 135-148 33-46 (155)
227 TIGR02918 accessory Sec system 27.9 1.4E+02 0.003 32.0 6.3 51 109-163 320-373 (500)
228 cd04905 ACT_CM-PDT C-terminal 27.9 1.2E+02 0.0027 23.5 4.6 44 100-143 34-77 (80)
229 PF02780 Transketolase_C: Tran 27.6 1.1E+02 0.0024 25.8 4.5 51 109-162 11-61 (124)
230 PRK03767 NAD(P)H:quinone oxido 27.5 98 0.0021 28.6 4.6 40 109-148 3-43 (200)
231 TIGR00725 conserved hypothetic 27.4 2.3E+02 0.0049 25.7 6.8 59 109-175 3-63 (159)
232 PRK14974 cell division protein 27.4 3.8E+02 0.0083 27.4 9.1 56 107-162 139-194 (336)
233 cd00859 HisRS_anticodon HisRS 27.3 66 0.0014 24.3 2.9 26 120-145 12-37 (91)
234 cd05017 SIS_PGI_PMI_1 The memb 26.8 2.8E+02 0.0062 23.1 6.9 44 122-176 56-99 (119)
235 PRK11145 pflA pyruvate formate 26.8 1.4E+02 0.0031 28.1 5.6 50 110-160 73-122 (246)
236 cd03825 GT1_wcfI_like This fam 26.6 1.1E+02 0.0024 29.0 4.9 39 109-147 2-41 (365)
237 KOG3572 Uncharacterized conser 26.5 1.4E+02 0.0031 36.1 6.4 143 6-148 294-498 (1701)
238 COG3660 Predicted nucleoside-d 26.5 1.9E+02 0.004 29.5 6.4 96 61-161 112-218 (329)
239 PRK14489 putative bifunctional 26.3 1.1E+02 0.0024 31.2 5.1 14 150-163 217-230 (366)
240 PF05378 Hydant_A_N: Hydantoin 26.3 1.9E+02 0.0041 26.6 6.2 39 121-160 132-173 (176)
241 PRK14176 bifunctional 5,10-met 26.2 6.9E+02 0.015 25.2 11.9 74 110-186 42-117 (287)
242 cd02070 corrinoid_protein_B12- 26.2 3.2E+02 0.0069 25.3 7.7 39 107-148 82-120 (201)
243 cd03800 GT1_Sucrose_synthase T 26.0 3.2E+02 0.0069 26.4 8.1 57 107-163 219-280 (398)
244 COG3958 Transketolase, C-termi 26.0 1.6E+02 0.0034 30.2 5.9 48 123-175 205-252 (312)
245 PRK06027 purU formyltetrahydro 25.9 3.1E+02 0.0066 27.3 8.0 38 104-145 86-123 (286)
246 cd03409 Chelatase_Class_II Cla 25.9 2.7E+02 0.0059 22.1 6.4 58 115-176 8-68 (101)
247 PRK00726 murG undecaprenyldiph 25.6 99 0.0021 30.3 4.5 38 108-146 2-39 (357)
248 cd07041 STAS_RsbR_RsbS_like Su 25.5 1.6E+02 0.0034 24.0 5.0 67 80-148 15-85 (109)
249 COG1763 MobB Molybdopterin-gua 25.4 1.2E+02 0.0027 27.8 4.7 40 108-147 2-41 (161)
250 cd04946 GT1_AmsK_like This fam 25.3 7.3E+02 0.016 25.2 10.9 50 109-160 231-283 (407)
251 PRK00973 glucose-6-phosphate i 25.2 6.7E+02 0.015 26.8 10.7 158 7-175 2-175 (446)
252 PRK00170 azoreductase; Reviewe 25.1 1.5E+02 0.0032 26.9 5.2 41 108-148 2-47 (201)
253 cd04181 NTP_transferase NTP_tr 25.0 3.2E+02 0.007 24.4 7.4 76 50-143 1-76 (217)
254 CHL00028 clpP ATP-dependent Cl 24.9 3.3E+02 0.0072 25.7 7.7 75 72-148 23-100 (200)
255 COG2454 Uncharacterized conser 24.8 2.9E+02 0.0063 26.8 7.2 67 84-158 109-175 (211)
256 PRK07765 para-aminobenzoate sy 24.7 82 0.0018 29.8 3.5 44 110-158 49-93 (214)
257 PRK14180 bifunctional 5,10-met 24.6 7.3E+02 0.016 25.0 10.9 74 110-186 35-110 (282)
258 PRK14170 bifunctional 5,10-met 24.6 7.4E+02 0.016 25.0 11.0 76 109-186 33-110 (284)
259 PRK09922 UDP-D-galactose:(gluc 24.6 2.1E+02 0.0045 28.3 6.5 52 108-164 180-234 (359)
260 KOG2228 Origin recognition com 24.4 5E+02 0.011 27.4 9.2 152 26-184 29-212 (408)
261 PF05762 VWA_CoxE: VWA domain 24.3 2.7E+02 0.0058 26.3 7.0 70 80-149 23-101 (222)
262 PRK14167 bifunctional 5,10-met 24.3 7.6E+02 0.016 25.0 10.9 76 109-186 33-110 (297)
263 cd04891 ACT_AK-LysC-DapG-like_ 24.2 2.2E+02 0.0048 19.7 5.0 29 120-148 10-38 (61)
264 PRK06523 short chain dehydroge 24.2 1.6E+02 0.0034 27.3 5.3 22 127-148 165-186 (260)
265 TIGR00064 ftsY signal recognit 24.2 5.9E+02 0.013 25.0 9.5 57 106-162 70-126 (272)
266 PRK14513 ATP-dependent Clp pro 24.1 3.9E+02 0.0085 25.4 8.0 68 79-148 30-97 (201)
267 PF09875 DUF2102: Uncharacteri 23.9 1.7E+02 0.0037 25.4 4.9 64 112-176 2-65 (104)
268 PRK00277 clpP ATP-dependent Cl 23.9 3.5E+02 0.0076 25.3 7.6 68 79-148 34-101 (200)
269 TIGR02540 gpx7 putative glutat 23.9 3.3E+02 0.0072 23.6 7.0 39 123-161 42-83 (153)
270 COG1393 ArsC Arsenate reductas 23.8 2.8E+02 0.0061 24.1 6.4 49 111-163 3-51 (117)
271 PRK05723 flavodoxin; Provision 23.7 99 0.0022 27.7 3.7 35 109-143 2-36 (151)
272 cd06844 STAS Sulphate Transpor 23.7 1.8E+02 0.0038 23.5 4.9 67 80-148 13-83 (100)
273 PRK07119 2-ketoisovalerate fer 23.6 2.8E+02 0.006 28.4 7.3 50 122-176 258-307 (352)
274 PRK14193 bifunctional 5,10-met 23.6 7.6E+02 0.017 24.8 11.0 74 110-186 36-111 (284)
275 cd04935 ACT_AKiii-DAPDC_1 ACT 23.6 2.4E+02 0.0051 22.2 5.5 31 115-145 8-38 (75)
276 TIGR01307 pgm_bpd_ind 2,3-bisp 23.4 3.9E+02 0.0085 29.1 8.7 90 67-162 74-171 (501)
277 PF10740 DUF2529: Protein of u 23.3 1.3E+02 0.0028 28.3 4.4 35 106-143 81-115 (172)
278 cd01822 Lysophospholipase_L1_l 23.3 4.1E+02 0.0089 22.8 7.5 52 111-162 3-60 (177)
279 PRK14175 bifunctional 5,10-met 23.3 7.7E+02 0.017 24.8 10.9 73 110-185 36-110 (286)
280 cd07013 S14_ClpP Caseinolytic 23.2 2.4E+02 0.0053 25.4 6.2 41 105-146 28-70 (162)
281 cd03802 GT1_AviGT4_like This f 23.1 2.9E+02 0.0063 26.0 7.0 41 106-148 169-209 (335)
282 cd01746 GATase1_CTP_Synthase T 22.7 2.8E+02 0.006 26.8 6.8 49 110-163 58-106 (235)
283 PRK12551 ATP-dependent Clp pro 22.5 4.5E+02 0.0097 24.8 8.0 68 79-148 28-95 (196)
284 PLN02683 pyruvate dehydrogenas 22.4 2.2E+02 0.0049 29.2 6.4 48 124-176 242-289 (356)
285 cd01025 TOPRIM_recR TOPRIM_rec 22.4 1.8E+02 0.0038 25.4 4.8 42 108-149 57-98 (112)
286 CHL00144 odpB pyruvate dehydro 22.3 2.4E+02 0.0051 28.6 6.5 49 123-176 214-262 (327)
287 cd02037 MRP-like MRP (Multiple 22.3 3.8E+02 0.0082 23.6 7.2 64 110-176 94-168 (169)
288 cd01542 PBP1_TreR_like Ligand- 22.3 5.8E+02 0.013 23.1 8.6 108 21-148 94-212 (259)
289 cd06533 Glyco_transf_WecG_TagA 22.3 5E+02 0.011 23.5 8.1 79 89-176 30-108 (171)
290 PRK13981 NAD synthetase; Provi 22.2 9.9E+02 0.021 25.6 12.3 92 19-146 251-345 (540)
291 PRK14189 bifunctional 5,10-met 22.1 8.2E+02 0.018 24.6 11.6 73 111-186 37-111 (285)
292 PF02875 Mur_ligase_C: Mur lig 22.0 1.4E+02 0.0031 23.7 4.0 53 89-146 25-80 (91)
293 cd02968 SCO SCO (an acronym fo 22.0 4.2E+02 0.0092 22.0 7.2 54 109-163 25-85 (142)
294 KOG1615 Phosphoserine phosphat 22.0 59 0.0013 31.5 2.0 64 79-147 52-115 (227)
295 TIGR03566 FMN_reduc_MsuE FMN r 21.9 1.3E+02 0.0029 27.0 4.2 38 109-146 1-41 (174)
296 TIGR02826 RNR_activ_nrdG3 anae 21.8 1.1E+02 0.0024 27.4 3.7 96 48-162 15-110 (147)
297 PF02635 DrsE: DsrE/DsrF-like 21.8 2.3E+02 0.0049 22.8 5.3 64 81-147 11-86 (122)
298 cd01672 TMPK Thymidine monopho 21.8 3.1E+02 0.0067 24.0 6.5 37 110-147 2-39 (200)
299 PF06415 iPGM_N: BPG-independe 21.7 5.4E+02 0.012 25.1 8.5 34 115-148 38-72 (223)
300 PF11713 Peptidase_C80: Peptid 21.7 2E+02 0.0044 26.2 5.3 44 105-148 101-146 (157)
301 PRK14188 bifunctional 5,10-met 21.7 8.4E+02 0.018 24.6 11.4 74 110-186 36-111 (296)
302 PRK14184 bifunctional 5,10-met 21.7 8.4E+02 0.018 24.6 11.4 74 110-186 35-110 (286)
303 PF07739 TipAS: TipAS antibiot 21.6 63 0.0014 26.7 1.9 16 369-384 51-66 (118)
304 cd04795 SIS SIS domain. SIS (S 21.4 1.5E+02 0.0033 22.5 4.0 22 122-143 60-81 (87)
305 PRK00923 sirohydrochlorin coba 21.4 4.2E+02 0.0091 22.4 7.0 54 115-174 10-67 (126)
306 cd03028 GRX_PICOT_like Glutare 21.4 3E+02 0.0065 22.1 5.8 51 108-162 8-59 (90)
307 PLN02530 histidine-tRNA ligase 21.3 3.7E+02 0.008 28.7 8.0 96 69-175 361-460 (487)
308 cd03816 GT1_ALG1_like This fam 21.2 4.4E+02 0.0095 26.9 8.3 51 109-163 233-292 (415)
309 COG1819 Glycosyl transferases, 21.1 1.1E+02 0.0024 31.8 4.0 40 107-147 1-40 (406)
310 COG1184 GCD2 Translation initi 21.1 1.6E+02 0.0035 30.0 4.9 35 105-143 141-177 (301)
311 cd04913 ACT_AKii-LysC-BS-like_ 21.0 2.2E+02 0.0048 20.7 4.7 29 119-147 10-38 (75)
312 cd05014 SIS_Kpsf KpsF-like pro 20.8 1.9E+02 0.0041 24.0 4.7 26 121-148 59-84 (128)
313 cd03806 GT1_ALG11_like This fa 20.7 3.7E+02 0.0081 27.6 7.7 81 107-189 236-327 (419)
314 PRK10076 pyruvate formate lyas 20.7 1.9E+02 0.004 27.6 5.1 50 110-162 41-90 (213)
315 PLN02871 UDP-sulfoquinovose:DA 20.7 1.9E+02 0.004 30.0 5.5 42 105-146 56-101 (465)
316 cd04920 ACT_AKiii-DAPDC_2 ACT 20.7 2.4E+02 0.0052 21.2 4.8 37 110-148 2-38 (63)
317 PRK05434 phosphoglyceromutase; 20.6 3.4E+02 0.0074 29.5 7.6 90 67-162 78-175 (507)
318 cd06274 PBP1_FruR Ligand bindi 20.5 6.6E+02 0.014 22.9 9.7 123 7-148 81-217 (264)
319 PF14336 DUF4392: Domain of un 20.4 4.5E+02 0.0097 26.3 7.9 65 91-163 28-99 (291)
320 PRK08339 short chain dehydroge 20.4 1.8E+02 0.0038 27.5 4.9 62 85-148 115-191 (263)
321 cd05013 SIS_RpiR RpiR-like pro 20.1 1.9E+02 0.0041 23.7 4.5 25 122-148 73-97 (139)
322 cd02766 MopB_3 The MopB_3 CD i 20.1 4.2E+02 0.009 28.1 8.1 119 20-143 69-193 (501)
323 PF01820 Dala_Dala_lig_N: D-al 20.1 1.6E+02 0.0036 25.1 4.2 41 108-148 1-44 (117)
324 PRK07097 gluconate 5-dehydroge 20.0 2.6E+02 0.0057 26.1 6.0 23 126-148 171-193 (265)
325 PRK09739 hypothetical protein; 20.0 2E+02 0.0043 26.4 5.0 40 108-147 4-45 (199)
No 1
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-85 Score=612.05 Aligned_cols=240 Identities=61% Similarity=0.926 Sum_probs=227.7
Q ss_pred CCcceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 016296 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (392)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~ 80 (392)
||||+||||||||+|||||||.||||++|+++|+.+|..|+++||||+||||+|++..++||+|||.|+++|+++||.+.
T Consensus 1 MvlEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 1 MVLEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ 80 (259)
T ss_pred CCcceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
++|+++|.+||++|+++||||++|+|++|||+|+|||+.+++++|+++||+|||++|.||||.||+.. +|+++|.+|++
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~-~~~e~l~~fid 159 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAE-NNTEKLFEFID 159 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEecccc-ccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred HHcC-CCCceEEEecCCChhhhhhhhcCCcccCCCCCCCchhHHHHhhhcCCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q 016296 161 AVNN-NDSSHLVHVPTGPNALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEER 239 (392)
Q Consensus 161 ~vn~-~d~Sh~v~vp~g~~lLsD~l~sspi~~~~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~Alr~SlEEe~ 239 (392)
++|+ +++||+|+||||+ +|+|+|++|||+.||+ |++ +++.++.|.+|+|||||++|||||||||+||||||
T Consensus 160 a~N~~~~gshlv~Vppg~-~L~d~l~ssPii~ge~--g~a-----~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 160 ALNGKGDGSHLVSVPPGP-LLSDALLSSPIIQGED--GGA-----AAGLGANGMDFEFGVDPEDDPELALALRLSMEEER 231 (259)
T ss_pred HhcCCCCCceEEEeCCCc-cHHHHhhcCceeccCc--ccc-----cccccccccccccCCCcccCHHHHHHHHhhHHHHH
Confidence 9999 7899999999999 8999999999999987 222 12344556789999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 016296 240 ARQEAAAKRA 249 (392)
Q Consensus 240 ~rq~~~~~~~ 249 (392)
+|||++++++
T Consensus 232 ~rQe~aa~~~ 241 (259)
T KOG2884|consen 232 ARQERAAQKA 241 (259)
T ss_pred HHHHHHhhhc
Confidence 9999776553
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-70 Score=498.22 Aligned_cols=233 Identities=49% Similarity=0.723 Sum_probs=221.5
Q ss_pred CCcceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 016296 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (392)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~ 80 (392)
||||||||+||||+||+||||.||||+||+++|..++..||+.||+|+||||+.++..+.||+|||.+++||+++||.+.
T Consensus 1 mvlEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~ 80 (243)
T COG5148 1 MVLEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIR 80 (243)
T ss_pred CCcceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
++|+.++..+|++|+++||||+||.+++|||+|||||+.+++++++.+||+||||||+||||.||+.. |..-|.+|+.
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~--n~~~l~efId 158 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA--NMAGLFEFID 158 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh--hhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 8899999999
Q ss_pred HHcCCCCceEEEecCCChhhhhhhhcCCcccCCCCCCCchhHHHHhhhcCCCCCCccCCCCCCCHHHHHHHHhcHHHHHH
Q 016296 161 AVNNNDSSHLVHVPTGPNALSDVLISSPVFTADGEGGSGFAAAAAAAAAGGVSDFDFGVDPNIDPELALALRVSMEEERA 240 (392)
Q Consensus 161 ~vn~~d~Sh~v~vp~g~~lLsD~l~sspi~~~~~~~~~~~~~~~~~~~~~~~~~~efgvDp~~DPELa~Alr~SlEEe~~ 240 (392)
++|+.+.||++++||+|.+|+++|-+|||-+ | .-|+.+.||||||||+|||||+|||+||||||+
T Consensus 159 a~N~~dsshl~~~~P~p~ll~~~~~~spig~--g-------------~~g~~~~~e~gvDp~lDpELA~AlrLSmeEek~ 223 (243)
T COG5148 159 ATNFSDSSHLEVKPPNPELLDRVLPFSPIGQ--G-------------VVGDDLQLEYGVDPNLDPELAEALRLSMEEEKK 223 (243)
T ss_pred hhccccceeeEecCCCHHHHHhhccCCcccc--c-------------cccCccceecCCCCCCCHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999822 2 112334799999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 016296 241 RQEAAAKRAA 250 (392)
Q Consensus 241 rq~~~~~~~~ 250 (392)
||+..+++..
T Consensus 224 rQe~~~qk~~ 233 (243)
T COG5148 224 RQEVAAQKSS 233 (243)
T ss_pred HHHHHHHhhh
Confidence 9999886643
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=1.7e-56 Score=413.55 Aligned_cols=187 Identities=63% Similarity=0.955 Sum_probs=183.9
Q ss_pred CCcceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 016296 1 MVLEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (392)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~ 80 (392)
|++||+|||||+|+||+|+||+||||++|+++++.|+.+||++||+++||||+|+|+.+++++|||+|+++++.+|+.++
T Consensus 1 m~~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~ 80 (187)
T cd01452 1 MVLEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred CCceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
++|+++|++||++|+++|||++++.+++|||+|++|+.++|++++++++|+|||+||+|+|||||+.. +|++||++|++
T Consensus 81 ~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~-~~~~~l~~~~~ 159 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID-DNTEKLTAFID 159 (187)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC-CCHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999998 89999999999
Q ss_pred HHcCCCCceEEEecCCChhhhhhhhcCC
Q 016296 161 AVNNNDSSHLVHVPTGPNALSDVLISSP 188 (392)
Q Consensus 161 ~vn~~d~Sh~v~vp~g~~lLsD~l~ssp 188 (392)
++|++++||||+||+|+++|||+|++||
T Consensus 160 ~~~~~~~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 160 AVNGKDGSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred HhcCCCCceEEEeCCCCchhHHHhhcCC
Confidence 9999999999999999999999999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=100.00 E-value=2.5e-38 Score=293.70 Aligned_cols=169 Identities=21% Similarity=0.323 Sum_probs=154.4
Q ss_pred EEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc---ccCCcC
Q 016296 9 CIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL---DIGGEM 85 (392)
Q Consensus 9 vIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i---~~~G~~ 85 (392)
|||+|+||+++||+||||.+++++++.|+++||+|||++|||||+|+++.+++++++++++.+|+.+|.++ .|.|++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999988775 699999
Q ss_pred cHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCC
Q 016296 86 NIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNN 165 (392)
Q Consensus 86 sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~ 165 (392)
+|+|||++|+.+|||+|.. ..++||+++||..++|++++++++++||+++|+|+||||++|++ +|+++++.|+
T Consensus 81 SLqN~Le~A~~~L~~~p~~-~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~----I~k~i~~~T~-- 153 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSH-GSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEVY----ICKKICKETG-- 153 (193)
T ss_pred hHHHHHHHHHHHHhhCccc-cceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHHH----HHHHHHHhhC--
Confidence 9999999999999999753 44567777799999999999999999999999999999999997 9999999996
Q ss_pred CCceEEEecCCChhhhhhhhcC
Q 016296 166 DSSHLVHVPTGPNALSDVLISS 187 (392)
Q Consensus 166 d~Sh~v~vp~g~~lLsD~l~ss 187 (392)
|.|.|.+..+ | |.|.|+..
T Consensus 154 -G~y~V~lde~-H-~~~lL~~~ 172 (193)
T PF04056_consen 154 -GTYGVILDED-H-FKELLMEH 172 (193)
T ss_pred -CEEEEecCHH-H-HHHHHHhh
Confidence 4777777664 4 88888766
No 5
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1.2e-30 Score=254.97 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=156.2
Q ss_pred cceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc-c
Q 016296 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD-I 81 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~-~ 81 (392)
...++|+||.|++|...||+|+|+..+.++++.|+.+||+|||++|+|||+++++.+.+++.+|+++..++.+|.++. +
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~ 139 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTEC 139 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhccccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999985 9
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcE-EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQR-IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~R-IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
+|.++|+|||++|+..|||.+. |..| |+|+++|..+.||+++++++++||+.||||+|||+.+++. +|+.+++
T Consensus 140 ~g~fSLqNaLe~a~~~Lk~~p~--H~sREVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~----icK~l~k 213 (378)
T KOG2807|consen 140 SGDFSLQNALELAREVLKHMPG--HVSREVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF----ICKELCK 213 (378)
T ss_pred CCChHHHHHHHHHHHHhcCCCc--ccceEEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH----HHHHHHH
Confidence 9999999999999999999864 5544 5555588888899999999999999999999999999996 9999999
Q ss_pred HHcCCCCceEEEecCCChhhhhhhhcC
Q 016296 161 AVNNNDSSHLVHVPTGPNALSDVLISS 187 (392)
Q Consensus 161 ~vn~~d~Sh~v~vp~g~~lLsD~l~ss 187 (392)
+|+ |-|.|.+.++. |.+.+.-.
T Consensus 214 aT~---G~Y~V~lDe~H--lkeLl~e~ 235 (378)
T KOG2807|consen 214 ATG---GRYSVALDEGH--LKELLLEH 235 (378)
T ss_pred hhC---CeEEEEeCHHH--HHHHHHhc
Confidence 997 46777777763 56655443
No 6
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.97 E-value=1.8e-29 Score=231.04 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=147.8
Q ss_pred cceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc-cc
Q 016296 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL-DI 81 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i-~~ 81 (392)
+..+||+||+|.||.+.||.||||++++++++.|++.+++.||.++||||+|+++.+++++|||.|+..++..|+.+ .+
T Consensus 3 ~r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~ 82 (183)
T cd01453 3 MRHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAREC 82 (183)
T ss_pred eeEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCC
Confidence 46799999999999999999999999999999999999999999999999995444799999999999999999987 67
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
.|+++|..||++|...|++++ ....++||||+++..++++.++.++++++|+++|+|++|+||.+. +.|+++++.
T Consensus 83 ~G~t~l~~aL~~A~~~l~~~~-~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~----~~L~~ia~~ 157 (183)
T cd01453 83 SGEPSLQNGLEMALESLKHMP-SHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM----HICKEICKA 157 (183)
T ss_pred CCchhHHHHHHHHHHHHhcCC-ccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH----HHHHHHHHH
Confidence 788999999999999999863 233566787877755567777888999999999999999999765 589999988
Q ss_pred HcCCCCceEEEecCCChhhhhhhh
Q 016296 162 VNNNDSSHLVHVPTGPNALSDVLI 185 (392)
Q Consensus 162 vn~~d~Sh~v~vp~g~~lLsD~l~ 185 (392)
+ +|+||.+..+. -|.+++.
T Consensus 158 t---gG~~~~~~~~~--~l~~~~~ 176 (183)
T cd01453 158 T---NGTYKVILDET--HLKELLL 176 (183)
T ss_pred h---CCeeEeeCCHH--HHHHHHH
Confidence 8 46777665543 3666553
No 7
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-25 Score=218.49 Aligned_cols=177 Identities=15% Similarity=0.233 Sum_probs=156.2
Q ss_pred cceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc-cc
Q 016296 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL-DI 81 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i-~~ 81 (392)
+...+|+||+|++|...||.|+|+.-+.+++..||.+||++||++|++||.|++.-+...+.+.+|+..++..|..+ .|
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~ 166 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDC 166 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhccccc
Confidence 35689999999999999999999999999999999999999999999999999998888889999999999999998 79
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcE-EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQR-IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~R-IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
.|+.+|+|||++|+..|-|. ..|..| |+|++||..+.||+++++++.+|...+|+|.+||+.+++ .+|+.+++
T Consensus 167 ~gnfSLqNaLEmar~~l~~~--~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev----aicKeick 240 (421)
T COG5151 167 SGNFSLQNALEMARIELMKN--TMHGTREVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV----AICKEICK 240 (421)
T ss_pred CCChhHHhHHHHhhhhhccc--ccccceEEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH----HHHHHHHh
Confidence 99999999999999888774 556555 555558988889999999999999999999999999998 59999999
Q ss_pred HHcCCC-CceEEEecCCChhhhhhhhcC
Q 016296 161 AVNNND-SSHLVHVPTGPNALSDVLISS 187 (392)
Q Consensus 161 ~vn~~d-~Sh~v~vp~g~~lLsD~l~ss 187 (392)
++|+++ +-|+|.|..+ | |++.+.-+
T Consensus 241 aTn~~~e~~y~v~vde~-H-l~el~~E~ 266 (421)
T COG5151 241 ATNSSTEGRYYVPVDEG-H-LSELMREL 266 (421)
T ss_pred hcCcCcCceeEeeecHH-H-HHHHHHhc
Confidence 999876 4566666665 3 56655444
No 8
>PRK13685 hypothetical protein; Provisional
Probab=99.81 E-value=1.8e-18 Score=171.31 Aligned_cols=155 Identities=21% Similarity=0.317 Sum_probs=129.7
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
.+|||||.|.||...|+.|+||+.++.++..|++. .+|..+||||+|++. +.+++|+|.|+..+...|..+.++|.
T Consensus 90 ~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~-a~~~~p~t~d~~~l~~~l~~l~~~~~ 165 (326)
T PRK13685 90 VVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGT-ATVLVSPTTNREATKNAIDKLQLADR 165 (326)
T ss_pred eEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCc-eeecCCCCCCHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999986 367899999999998 58999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhccc------CCCCCCcEEEEEEcCCCCCC-----hhhHHHHHHHHHhCCceEEEEEeCCCC-----
Q 016296 85 MNIAAGIQVAQLALKHR------QNKNQRQRIIVFAGSPVKYD-----RKVMEMIGKKLKKNSVAIDIVNFGEDD----- 148 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr------~~k~~~~RIVvFvgSp~~~d-----~~~l~~~ak~LKknnI~VdiI~fG~e~----- 148 (392)
+++..+|..|...++.. ......++||+|.++..+.. +....++++.+++.+|+|++||||+..
T Consensus 166 T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~ 245 (326)
T PRK13685 166 TATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEI 245 (326)
T ss_pred cchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCc
Confidence 99999999999887521 01234567888887755432 234567889999999999999999852
Q ss_pred -------CCcHHHHHHHHHHHc
Q 016296 149 -------DGKPEKLEALLAAVN 163 (392)
Q Consensus 149 -------~~n~~~l~~~~~~vn 163 (392)
.-+.+.|+++.+.++
T Consensus 246 ~g~~~~~~~d~~~L~~iA~~tg 267 (326)
T PRK13685 246 NGQRQPVPVDDESLKKIAQLSG 267 (326)
T ss_pred CCceeeecCCHHHHHHHHHhcC
Confidence 125678999987764
No 9
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.77 E-value=3.4e-17 Score=141.82 Aligned_cols=163 Identities=26% Similarity=0.390 Sum_probs=127.2
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc----
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI---- 81 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~---- 81 (392)
++||||+|.||...|..++|+..++.++..|+..+ |.++|||+.|.+. +.++.++|.|+..++..|.++.+
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~f~~~-~~~~~~~t~~~~~~~~~l~~~~~~~~~ 76 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL----PGDRVGLVSFSDS-SRTLSPLTSDKDELKNALNKLSPQGMP 76 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH----TTSEEEEEEESTS-CEEEEEEESSHHHHHHHHHTHHHHG--
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC----CCCEEEEEEeccc-ccccccccccHHHHHHHhhcccccccC
Confidence 79999999999999999999999999999999973 7889999999987 58999999999999999998764
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEE-cCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFv-gSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
.|.+.+..||..|...|... + ..+|+|||+ ++. +..+..++++.+++.+|+|++|+||... ...+.|+.+++
T Consensus 77 ~~~t~~~~al~~a~~~~~~~--~-~~~~~iv~iTDG~---~~~~~~~~~~~~~~~~i~i~~v~~~~~~-~~~~~l~~la~ 149 (172)
T PF13519_consen 77 GGGTNLYDALQEAAKMLASS--D-NRRRAIVLITDGE---DNSSDIEAAKALKQQGITIYTVGIGSDS-DANEFLQRLAE 149 (172)
T ss_dssp SSS--HHHHHHHHHHHHHC---S-SEEEEEEEEES-T---THCHHHHHHHHHHCTTEEEEEEEES-TT--EHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHhC--C-CCceEEEEecCCC---CCcchhHHHHHHHHcCCeEEEEEECCCc-cHHHHHHHHHH
Confidence 68999999999999999764 2 344444444 432 2245557999999999999999999998 55689999998
Q ss_pred HHcCCCCceEEEecCCChhhhhhh
Q 016296 161 AVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 161 ~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
.++ .+|+.+...+.-|.+++
T Consensus 150 ~tg----G~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 150 ATG----GRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp HTE----EEEEEE-SSSHHHHHHH
T ss_pred hcC----CEEEEecCCHHHHHHHH
Confidence 775 46777743344566665
No 10
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.72 E-value=5.1e-16 Score=138.49 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=121.4
Q ss_pred eEEEEEeCCccccCCCC-CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc---
Q 016296 5 ATMICIDNSEWMRNGDY-SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD--- 80 (392)
Q Consensus 5 a~~IvIDnSesMrngD~-~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~--- 80 (392)
.++||||.|.||...|+ .++||..++.++..|+. ..|..+|||++|.+. +.+++++|.+...+...|+.+.
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~----~~~~~~v~lv~f~~~-~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID----RRENDRIGLVVFAGA-AFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEEcCC-eeeccCCCccHHHHHHHHHHhhhcc
Confidence 47999999999999999 69999999998888776 457899999999886 5889999999988887777764
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC----------CCC
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED----------DDG 150 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e----------~~~ 150 (392)
++|++++..||..|...|... +..++.||||.++............++.+++.+|.|++|+||.. . .
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~-~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNS--EAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTI-L 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCccc-C
Confidence 688999999999999888653 23456677777775444334455667788889999999999983 2 3
Q ss_pred cHHHHHHHHHHHc
Q 016296 151 KPEKLEALLAAVN 163 (392)
Q Consensus 151 n~~~l~~~~~~vn 163 (392)
..+.|+.|.+.++
T Consensus 156 ~~~~l~~la~~tg 168 (180)
T cd01467 156 DEDSLVEIADKTG 168 (180)
T ss_pred CHHHHHHHHHhcC
Confidence 5678999987774
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.70 E-value=1.7e-15 Score=133.17 Aligned_cols=145 Identities=20% Similarity=0.327 Sum_probs=119.2
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i~~~ 82 (392)
.+++|||+|.||... ||+.++.++..++.. .++..+|||++|+++ +.+++++| .++..++..|..+.++
T Consensus 2 ~~~~vlD~S~SM~~~-----~~~~~k~a~~~~~~~---l~~~~~v~li~f~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~ 72 (170)
T cd01465 2 NLVFVIDRSGSMDGP-----KLPLVKSALKLLVDQ---LRPDDRLAIVTYDGA-AETVLPATPVRDKAAILAAIDRLTAG 72 (170)
T ss_pred cEEEEEECCCCCCCh-----hHHHHHHHHHHHHHh---CCCCCEEEEEEecCC-ccEEecCcccchHHHHHHHHHcCCCC
Confidence 378999999999743 689999999988885 567889999999987 58888776 5888899999999999
Q ss_pred CcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCC---hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 83 GEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD---RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 83 G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d---~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
|++++..+|..|...++++..+...++||+|.++..+++ ...+.+.++++++.+|.|++|+||.. .+...|+.|+
T Consensus 73 g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~--~~~~~l~~ia 150 (170)
T cd01465 73 GSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDN--YNEDLMEAIA 150 (170)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCC--cCHHHHHHHH
Confidence 999999999999999876433333477888887765443 35677888888999999999999943 5788999998
Q ss_pred H
Q 016296 160 A 160 (392)
Q Consensus 160 ~ 160 (392)
+
T Consensus 151 ~ 151 (170)
T cd01465 151 D 151 (170)
T ss_pred h
Confidence 5
No 12
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.67 E-value=6.6e-15 Score=133.05 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=121.8
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcC
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEM 85 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~ 85 (392)
++||||.|.||..+ +||..++.++..|+...+ ++..+||||+|.++.+.+++++|.+...+...|..+.++|.+
T Consensus 3 v~lvlD~SgSM~~~----~rl~~ak~a~~~~~~~~~--~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T 76 (178)
T cd01451 3 VIFVVDASGSMAAR----HRMAAAKGAVLSLLRDAY--QRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGT 76 (178)
T ss_pred EEEEEECCccCCCc----cHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCC
Confidence 78999999999753 799999999999987543 468899999999865689999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccc-CCCCCCcEEEEEEcCCCCC--Ch-hhH-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 86 NIAAGIQVAQLALKHR-QNKNQRQRIIVFAGSPVKY--DR-KVM-EMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 86 sL~~gL~vA~laLkhr-~~k~~~~RIVvFvgSp~~~--d~-~~l-~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
.|..||..|...|+.+ ..+..+++||||.++..++ ++ ... ..+++++++.+|.|.+|++|... .+...|+.+.+
T Consensus 77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~-~~~~~l~~iA~ 155 (178)
T cd01451 77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRP-VRRGLAKDLAR 155 (178)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCc-cCccHHHHHHH
Confidence 9999999999888221 1122346677777665543 22 233 67899999999999999999865 46779999997
Q ss_pred HHc
Q 016296 161 AVN 163 (392)
Q Consensus 161 ~vn 163 (392)
.++
T Consensus 156 ~tg 158 (178)
T cd01451 156 ALG 158 (178)
T ss_pred HcC
Confidence 774
No 13
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.65 E-value=4.2e-15 Score=138.71 Aligned_cols=145 Identities=16% Similarity=0.262 Sum_probs=116.6
Q ss_pred ceEEEEEeCCccccCC-CC-CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC---------ceEEECC-CCCHHH
Q 016296 4 EATMICIDNSEWMRNG-DY-SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG---------VRVLTTP-TTDLGK 71 (392)
Q Consensus 4 Ea~~IvIDnSesMrng-D~-~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~---------~~vlvtl-T~D~~k 71 (392)
|++++|||+|.||... |. .|+||+.++.++..|++.|.-.+|..+||||.|+.+. ..++.+| |.|...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 8999999999999855 33 4999999999999999998889999999999999863 2366777 666665
Q ss_pred HHHhhccccc-----------CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-----ChhhHHHHHHHHHhC
Q 016296 72 ILACMHELDI-----------GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-----DRKVMEMIGKKLKKN 135 (392)
Q Consensus 72 il~~L~~i~~-----------~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-----d~~~l~~~ak~LKkn 135 (392)
+...++.+.+ .++++|..||.+|...|++...+...+|||+|..+.... +...+.++++.|++.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 5444443332 457999999999999998744455678899998754432 245677889999999
Q ss_pred CceEEEEEeCCCC
Q 016296 136 SVAIDIVNFGEDD 148 (392)
Q Consensus 136 nI~VdiI~fG~e~ 148 (392)
+|.|.+|++|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 9999999999976
No 14
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.64 E-value=1.5e-14 Score=128.07 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=120.9
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhccccc-C
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDI-G 82 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i~~-~ 82 (392)
++|+||.|.||.. .+|..++.++..|+..+...+...+||||+|+++ +.++.+++ .|...++..|..+.. +
T Consensus 3 vv~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~ 76 (164)
T cd01472 3 IVFLVDGSESIGL-----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-PRTEFYLNTYRSKDDVLEAVKNLRYIG 76 (164)
T ss_pred EEEEEeCCCCCCH-----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-eeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 7899999999974 6899999999999998765566789999999987 58889999 899999999999986 6
Q ss_pred CcCcHHHHHHHHHHHhccc---CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 83 GEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 83 G~~sL~~gL~vA~laLkhr---~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
|.+++..||..|...|... ..+..++.||+|.++..+ .+....+..+++.+|+|++||+|.. +...|+.+.
T Consensus 77 g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~---~~~~~~~~~l~~~gv~i~~ig~g~~---~~~~L~~ia 150 (164)
T cd01472 77 GGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQ---DDVEEPAVELKQAGIEVFAVGVKNA---DEEELKQIA 150 (164)
T ss_pred CCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEECCcC---CHHHHHHHH
Confidence 7899999999999988752 223455556666555322 2345567789999999999999975 568999887
Q ss_pred HHHcCCCCceEEEe
Q 016296 160 AAVNNNDSSHLVHV 173 (392)
Q Consensus 160 ~~vn~~d~Sh~v~v 173 (392)
. .+++.|...+
T Consensus 151 ~---~~~~~~~~~~ 161 (164)
T cd01472 151 S---DPKELYVFNV 161 (164)
T ss_pred C---CCchheEEec
Confidence 4 3345566544
No 15
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.61 E-value=3.4e-14 Score=129.40 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=119.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhc------CCCCCcEEEEEecCCCceEEECCC---CCHHHHHHh
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQ------SNPENTVGILTMGGKGVRVLTTPT---TDLGKILAC 75 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~------~NPes~VGLvtmag~~~~vlvtlT---~D~~kil~~ 75 (392)
-++|+||.|.||.. ++|+.+++++..+++.+.. .+...+||||+|++. +.+.+++| .|...++.+
T Consensus 4 dvv~vlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~~l~~~ 77 (186)
T cd01480 4 DITFVLDSSESVGL-----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-QEVEAGFLRDIRNYTSLKEA 77 (186)
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-ceeeEecccccCCHHHHHHH
Confidence 47999999999973 6788889999999998854 356689999999987 68999998 789999999
Q ss_pred hcccc-cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016296 76 MHELD-IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (392)
Q Consensus 76 L~~i~-~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (392)
|++++ .+|.+.+..||..|...|.....+..++.||+|.++.... +...+.+.++.+|++||.|++|++|. . |..
T Consensus 78 i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~-~--~~~ 154 (186)
T cd01480 78 VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS-Q--NEE 154 (186)
T ss_pred HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc-c--chH
Confidence 99997 5889999999999999887522344666677777775532 34578889999999999999999998 3 456
Q ss_pred HHHHHH
Q 016296 154 KLEALL 159 (392)
Q Consensus 154 ~l~~~~ 159 (392)
.|+.+.
T Consensus 155 ~L~~IA 160 (186)
T cd01480 155 PLSRIA 160 (186)
T ss_pred HHHHHH
Confidence 677776
No 16
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.61 E-value=3.2e-14 Score=131.22 Aligned_cols=149 Identities=23% Similarity=0.320 Sum_probs=116.0
Q ss_pred eEEEEEeCCcccc-CCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC-----ceEEE---CCC--------C
Q 016296 5 ATMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----VRVLT---TPT--------T 67 (392)
Q Consensus 5 a~~IvIDnSesMr-ngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~-----~~vlv---tlT--------~ 67 (392)
.++||||+|.||. ..+-.++||+.++.++..|++. .+|..+|||++|++.. .++++ +++ .
T Consensus 22 ~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (206)
T cd01456 22 NVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSA 98 (206)
T ss_pred cEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCccccccccccccccccCCCCcc
Confidence 5899999999998 4445689999999999999986 4578899999999842 23333 232 4
Q ss_pred CHHHHHHhhcccc-cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhC-----CceEEE
Q 016296 68 DLGKILACMHELD-IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN-----SVAIDI 141 (392)
Q Consensus 68 D~~kil~~L~~i~-~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKkn-----nI~Vdi 141 (392)
++..+...|..+. +.|+++|..||..|...|. +...++||||.++..++.. +..+.++.+++. +|+|++
T Consensus 99 ~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~----~~~~~~iillTDG~~~~~~-~~~~~~~~~~~~~~~~~~i~i~~ 173 (206)
T cd01456 99 QRSALDAALNSLQTPTGWTPLAAALAEAAAYVD----PGRVNVVVLITDGEDTCGP-DPCEVARELAKRRTPAPPIKVNV 173 (206)
T ss_pred cHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC----CCCcceEEEEcCCCccCCC-CHHHHHHHHHHhcCCCCCceEEE
Confidence 7888899999998 9999999999999998885 1233678888877555433 444556666554 999999
Q ss_pred EEeCCCCCCcHHHHHHHHHHHc
Q 016296 142 VNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 142 I~fG~e~~~n~~~l~~~~~~vn 163 (392)
|+||... +.+.|+.+.+.++
T Consensus 174 igiG~~~--~~~~l~~iA~~tg 193 (206)
T cd01456 174 IDFGGDA--DRAELEAIAEATG 193 (206)
T ss_pred EEecCcc--cHHHHHHHHHhcC
Confidence 9999874 5789999997764
No 17
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.60 E-value=2.1e-14 Score=127.28 Aligned_cols=142 Identities=16% Similarity=0.264 Sum_probs=112.1
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC----CHHHHHHhhccccc
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELDI 81 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~----D~~kil~~L~~i~~ 81 (392)
++|+||.|.||.. +||..++.++..+++.+ .+..+||||+|++. ++++.++|. +...+...|..+.+
T Consensus 3 v~~vlD~S~SM~~-----~rl~~ak~a~~~l~~~l---~~~~~~~li~F~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (155)
T cd01466 3 LVAVLDVSGSMAG-----DKLQLVKHALRFVISSL---GDADRLSIVTFSTS-AKRLSPLRRMTAKGKRSAKRVVDGLQA 73 (155)
T ss_pred EEEEEECCCCCCc-----HHHHHHHHHHHHHHHhC---CCcceEEEEEecCC-ccccCCCcccCHHHHHHHHHHHHhccC
Confidence 6899999999974 39999999999888753 45689999999987 588888873 45677888889999
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
+|++++..||+.|...|+.+..+...++||++.++..+.. ....++++.+|.|++|+||... +.+.|+.+.+.
T Consensus 74 ~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~-----~~~~~~~~~~v~v~~igig~~~--~~~~l~~iA~~ 146 (155)
T cd01466 74 GGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHG-----AVVLRADNAPIPIHTFGLGASH--DPALLAFIAEI 146 (155)
T ss_pred CCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcc-----hhhhcccCCCceEEEEecCCCC--CHHHHHHHHhc
Confidence 9999999999999999876533445677787777643332 2234466789999999999754 56889999876
Q ss_pred Hc
Q 016296 162 VN 163 (392)
Q Consensus 162 vn 163 (392)
++
T Consensus 147 t~ 148 (155)
T cd01466 147 TG 148 (155)
T ss_pred cC
Confidence 64
No 18
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.59 E-value=1.1e-13 Score=116.62 Aligned_cols=150 Identities=23% Similarity=0.417 Sum_probs=126.5
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC--CHHHHHHhhcccc--
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACMHELD-- 80 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~--D~~kil~~L~~i~-- 80 (392)
.++|+||.|.|| .++||...+.++..++..+...++..++||+.|.+. ..++.+++. +...+...+..+.
T Consensus 2 ~v~~viD~S~Sm-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (161)
T cd00198 2 DIVFLLDVSGSM-----GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSN-ARVVLPLTTDTDKADLLEAIDALKKG 75 (161)
T ss_pred cEEEEEeCCCCc-----CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCc-cceeecccccCCHHHHHHHHHhcccC
Confidence 479999999999 679999999999999999888888999999999986 588888886 8888888888886
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
.+|.+++..+|..+...+.+...+...+++|+|.++........+....+++++++|.|.+|++|.. .+...|+.|+.
T Consensus 76 ~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~~--~~~~~l~~l~~ 153 (161)
T cd00198 76 LGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGDD--ANEDELKEIAD 153 (161)
T ss_pred CCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCCC--CCHHHHHHHhc
Confidence 7889999999999999997753344666677777776554444788999999999999999999993 46788888886
Q ss_pred HH
Q 016296 161 AV 162 (392)
Q Consensus 161 ~v 162 (392)
.+
T Consensus 154 ~~ 155 (161)
T cd00198 154 KT 155 (161)
T ss_pred cc
Confidence 55
No 19
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.58 E-value=1.4e-13 Score=133.64 Aligned_cols=156 Identities=23% Similarity=0.268 Sum_probs=122.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc---
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI--- 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~--- 81 (392)
.++||||.|.||. .++..++.++..|+...+ .|..+||||+|++. +.++.++|.|+..+..+|..+.+
T Consensus 55 ~vvlvlD~SgSM~------~~~~~a~~a~~~~l~~~l--~~~d~v~lv~f~~~-~~~~~~~t~~~~~l~~~l~~l~~~~~ 125 (296)
T TIGR03436 55 TVGLVIDTSGSMR------NDLDRARAAAIRFLKTVL--RPNDRVFVVTFNTR-LRLLQDFTSDPRLLEAALNRLKPPLR 125 (296)
T ss_pred eEEEEEECCCCch------HHHHHHHHHHHHHHHhhC--CCCCEEEEEEeCCc-eeEeecCCCCHHHHHHHHHhccCCCc
Confidence 6899999999997 368889999999998744 58999999999986 68999999999999999999987
Q ss_pred ------------CCcCcHHHHHHHHHHH-hcccCC-CCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 82 ------------GGEMNIAAGIQVAQLA-LKHRQN-KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 82 ------------~G~~sL~~gL~vA~la-Lkhr~~-k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
+|+++|..||..|.+- ++.... ...++.||+|.++........+..+++.|++++|.|++|+||..
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~ 205 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGL 205 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCcc
Confidence 8999999999777543 332211 11355677777675545566788999999999999999999964
Q ss_pred CC-----------CcHHHHHHHHHHHcCCCCceEEE
Q 016296 148 DD-----------GKPEKLEALLAAVNNNDSSHLVH 172 (392)
Q Consensus 148 ~~-----------~n~~~l~~~~~~vn~~d~Sh~v~ 172 (392)
.. .+.+.|+.|++.++ |.+|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~L~~iA~~TG---G~~~~~ 238 (296)
T TIGR03436 206 RAPDLGAGAKAGLGGPEALERLAEETG---GRAFYV 238 (296)
T ss_pred ccCCcccccccCCCcHHHHHHHHHHhC---CeEecc
Confidence 20 24679999998885 444444
No 20
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.56 E-value=2.2e-13 Score=122.93 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=111.1
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC----CHHH---HHHhhcc
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGK---ILACMHE 78 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~----D~~k---il~~L~~ 78 (392)
++|+||.|.||... +||..++.++..|++.+--.++..+||||+|++. +.++++++. +... ++..|..
T Consensus 3 v~~vlD~SgSm~~~----~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-~~~~~~l~~~~~~~~~~~~~~i~~l~~ 77 (186)
T cd01471 3 LYLLVDGSGSIGYS----NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-AKELIRLSSPNSTNKDLALNAIRALLS 77 (186)
T ss_pred EEEEEeCCCCccch----hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-ceEEEECCCccccchHHHHHHHHHHHh
Confidence 78999999999754 4789999999999998755566779999999987 588887664 4555 4444444
Q ss_pred c-ccCCcCcHHHHHHHHHHHhccc-C-CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016296 79 L-DIGGEMNIAAGIQVAQLALKHR-Q-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (392)
Q Consensus 79 i-~~~G~~sL~~gL~vA~laLkhr-~-~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l 155 (392)
. .++|.+++..||..|...|... . .+...+.||+|.++..+. .......+++||+.+|.|.+||||... |.+.|
T Consensus 78 ~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-~~~~~~~a~~l~~~gv~v~~igiG~~~--d~~~l 154 (186)
T cd01471 78 LYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS-KFRTLKEARKLRERGVIIAVLGVGQGV--NHEEN 154 (186)
T ss_pred CcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC-CcchhHHHHHHHHCCCEEEEEEeehhh--CHHHH
Confidence 3 5788999999999999888652 1 233556677776665433 345567899999999999999999864 56788
Q ss_pred HHHH
Q 016296 156 EALL 159 (392)
Q Consensus 156 ~~~~ 159 (392)
+.|.
T Consensus 155 ~~ia 158 (186)
T cd01471 155 RSLV 158 (186)
T ss_pred HHhc
Confidence 7775
No 21
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.55 E-value=3.1e-13 Score=117.56 Aligned_cols=149 Identities=22% Similarity=0.319 Sum_probs=123.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECC--CCCHHHHHHhhccccc-
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTP--TTDLGKILACMHELDI- 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtl--T~D~~kil~~L~~i~~- 81 (392)
.++||||+|.||. ++||.+++.++..|+..+...++..+|||++|.+. ...+.++ +.+...+...+..+.+
T Consensus 3 ~v~l~vD~S~SM~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 76 (177)
T smart00327 3 DVVFLLDGSGSMG-----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-ATVLFPLNDSRSKDALLEALASLSYK 76 (177)
T ss_pred cEEEEEeCCCccc-----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-ceEEEcccccCCHHHHHHHHHhcCCC
Confidence 4789999999997 78999999999999999999999999999999986 5788887 8999999999999985
Q ss_pred -CCcCcHHHHHHHHHHHhcccC---CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016296 82 -GGEMNIAAGIQVAQLALKHRQ---NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (392)
Q Consensus 82 -~G~~sL~~gL~vA~laLkhr~---~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~ 157 (392)
.|.+++..+|..|...+.++. +..+++.||+|.++... +...+...++++++++|.|++|++|... +...|+.
T Consensus 77 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~-~~~~~~~~~~~~~~~~i~i~~i~~~~~~--~~~~l~~ 153 (177)
T smart00327 77 LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESN-DGGDLLKAAKELKRSGVKVFVVGVGNDV--DEEELKK 153 (177)
T ss_pred CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEccCcc--CHHHHHH
Confidence 888999999999999986322 12224556666554332 3367899999999999999999999763 5689999
Q ss_pred HHHHH
Q 016296 158 LLAAV 162 (392)
Q Consensus 158 ~~~~v 162 (392)
|....
T Consensus 154 ~~~~~ 158 (177)
T smart00327 154 LASAP 158 (177)
T ss_pred HhCCC
Confidence 98655
No 22
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.54 E-value=4.6e-13 Score=121.27 Aligned_cols=161 Identities=13% Similarity=0.182 Sum_probs=121.7
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhccc-ccC
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHEL-DIG 82 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i-~~~ 82 (392)
++|+||.|.||. |.+|+.++..+..|++.+...++..+||||+|++. +.+.++++ .+...++.++..+ ..+
T Consensus 3 i~fvlD~S~S~~-----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-~~~~~~l~~~~~~~~~~~~i~~~~~~~ 76 (177)
T cd01469 3 IVFVLDGSGSIY-----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-FRTEFTLNEYRTKEEPLSLVKHISQLL 76 (177)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-eeEEEecCccCCHHHHHHHHHhCccCC
Confidence 689999999985 88999999999999998887777899999999987 68999988 3556777778777 467
Q ss_pred CcCcHHHHHHHHHHHhccc---CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCC--CcHHHHHH
Q 016296 83 GEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEKLEA 157 (392)
Q Consensus 83 G~~sL~~gL~vA~laLkhr---~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~--~n~~~l~~ 157 (392)
|.+++..||..|...|-.. ..+..++.+|||.++.... ......+++.||++||.|++||+|.... .+.+.|+.
T Consensus 77 g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~-~~~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ 155 (177)
T cd01469 77 GLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHD-DPLLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKT 155 (177)
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCC-ccccHHHHHHHHHCCcEEEEEEecccccccccHHHHHH
Confidence 7899999999998776211 1123555566666665443 3334678889999999999999999651 12456666
Q ss_pred HHHHHcCCCCceEEEecCC
Q 016296 158 LLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 158 ~~~~vn~~d~Sh~v~vp~g 176 (392)
++ ....+.|+..+..-
T Consensus 156 ia---s~p~~~h~f~~~~~ 171 (177)
T cd01469 156 IA---SKPPEEHFFNVTDF 171 (177)
T ss_pred Hh---cCCcHHhEEEecCH
Confidence 54 33456799888653
No 23
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.54 E-value=2.4e-13 Score=132.46 Aligned_cols=171 Identities=16% Similarity=0.201 Sum_probs=126.7
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc---
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI--- 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~--- 81 (392)
-+||+||+|.||...|..|+||+ ++..+..| +.+-+..+|||+.|++. +.++.|+|.|+.. ..+++-+.+
T Consensus 62 qIvlaID~S~SM~~~~~~~~ale-ak~lIs~a----l~~Le~g~vgVv~Fg~~-~~~v~Plt~d~~~-~a~~~~l~~~~f 134 (266)
T cd01460 62 QILIAIDDSKSMSENNSKKLALE-SLCLVSKA----LTLLEVGQLGVCSFGED-VQILHPFDEQFSS-QSGPRILNQFTF 134 (266)
T ss_pred eEEEEEecchhcccccccccHHH-HHHHHHHH----HHhCcCCcEEEEEeCCC-ceEeCCCCCCchh-hHHHHHhCcccC
Confidence 37999999999999999999998 44444444 44677899999999987 7999999999998 777766543
Q ss_pred -CCcCcHHHHHHHHHHHhcccCCCCCC----cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHH---
Q 016296 82 -GGEMNIAAGIQVAQLALKHRQNKNQR----QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE--- 153 (392)
Q Consensus 82 -~G~~sL~~gL~vA~laLkhr~~k~~~----~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~--- 153 (392)
.++|++..+|..|...|..+..+.+. +-|||+.++....+++....+++++++++|.|++|++=... .+..
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~-~~~SI~d 213 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPD-NKQSILD 213 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCC-CCCCccc
Confidence 36899999999999999754111122 44555556654466777777799999999999999998762 1111
Q ss_pred ------------HHHHHHHHHcCCCCceEEEecCC---Chhhhhhhhc
Q 016296 154 ------------KLEALLAAVNNNDSSHLVHVPTG---PNALSDVLIS 186 (392)
Q Consensus 154 ------------~l~~~~~~vn~~d~Sh~v~vp~g---~~lLsD~l~s 186 (392)
+++.|.+ .-...||++|..= |+.|+|+|-.
T Consensus 214 ~~~~~~~~~~~~~l~~Yl~---~fpfpYy~~~~~~~~lp~~l~~~lrq 258 (266)
T cd01460 214 IKVVSFKNDKSGVITPYLD---EFPFPYYVIVRDLNQLPSVLSDALRQ 258 (266)
T ss_pred ccccccCCCCccHHHHHHh---cCCCCeEEEecChhHhHHHHHHHHHH
Confidence 4455554 3367788888652 5678887743
No 24
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.54 E-value=3.1e-13 Score=123.75 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=118.0
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC----CCHHHHHHhhcccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT----TDLGKILACMHELD 80 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT----~D~~kil~~L~~i~ 80 (392)
.++||||.|.||. ++||+.++.++..|++.+-...+..+||||+|++. +.++++++ .+...++..|..+.
T Consensus 2 di~~vlD~SgSM~-----~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (198)
T cd01470 2 NIYIALDASDSIG-----EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFN 75 (198)
T ss_pred cEEEEEECCCCcc-----HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCC
Confidence 3789999999995 67999999999999998755556889999999987 58887765 46788999998875
Q ss_pred -----cCCcCcHHHHHHHHHHHhcccC------CCCCCcEEEEEEcCCCCC--ChhhHHHHHHHH----------HhCCc
Q 016296 81 -----IGGEMNIAAGIQVAQLALKHRQ------NKNQRQRIIVFAGSPVKY--DRKVMEMIGKKL----------KKNSV 137 (392)
Q Consensus 81 -----~~G~~sL~~gL~vA~laLkhr~------~k~~~~RIVvFvgSp~~~--d~~~l~~~ak~L----------KknnI 137 (392)
.+|++++..||..+...|.... ....++.||||.++..+. ++....+.++.+ |+.+|
T Consensus 76 ~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (198)
T cd01470 76 YDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYL 155 (198)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcce
Confidence 3578999999999887663110 122456677887775442 344444444444 56689
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCC-ceEEEecC
Q 016296 138 AIDIVNFGEDDDGKPEKLEALLAAVNNNDS-SHLVHVPT 175 (392)
Q Consensus 138 ~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~-Sh~v~vp~ 175 (392)
.|++||||... |.+.|+++.... ++ .|+..+..
T Consensus 156 ~i~~iGvG~~~--~~~~L~~iA~~~---~g~~~~f~~~~ 189 (198)
T cd01470 156 DVYVFGVGDDV--NKEELNDLASKK---DNERHFFKLKD 189 (198)
T ss_pred eEEEEecCccc--CHHHHHHHhcCC---CCCceEEEeCC
Confidence 99999999865 578999987533 34 37777654
No 25
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.54 E-value=5.6e-13 Score=118.64 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=118.4
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccc-cC
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELD-IG 82 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i~-~~ 82 (392)
++++||.|.||.. .+|+.++.++..|++.+.-.++..+||||+|+++ +.+.++++ .+...++..|.++. ++
T Consensus 3 v~~vlD~S~Sm~~-----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~-~~~~~~l~~~~~~~~l~~~l~~~~~~~ 76 (164)
T cd01482 3 IVFLVDGSWSIGR-----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDD-PRTEFDLNAYTSKEDVLAAIKNLPYKG 76 (164)
T ss_pred EEEEEeCCCCcCh-----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCC-eeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 7999999999964 5789999999999998755667899999999998 58888886 67888899999886 68
Q ss_pred CcCcHHHHHHHHHHHh-cccC--CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 83 GEMNIAAGIQVAQLAL-KHRQ--NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 83 G~~sL~~gL~vA~laL-khr~--~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
|.+++..||..|...+ +... .+..++.||||.++..+ .++..++++||+.||.|++||+|.. +.+.|+.+.
T Consensus 77 g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~---~~~~~~a~~lk~~gi~i~~ig~g~~---~~~~L~~ia 150 (164)
T cd01482 77 GNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKDA---DESELKMIA 150 (164)
T ss_pred CCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC---chHHHHHHHHHHCCCEEEEEecCcC---CHHHHHHHh
Confidence 8999999999887654 3211 13345556666665432 3567889999999999999999974 356777776
Q ss_pred HHHcCCCCceEEEec
Q 016296 160 AAVNNNDSSHLVHVP 174 (392)
Q Consensus 160 ~~vn~~d~Sh~v~vp 174 (392)
.. ....|+..|.
T Consensus 151 ~~---~~~~~~~~~~ 162 (164)
T cd01482 151 SK---PSETHVFNVA 162 (164)
T ss_pred CC---CchheEEEcC
Confidence 33 3456777664
No 26
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.54 E-value=5.7e-13 Score=117.00 Aligned_cols=156 Identities=12% Similarity=0.150 Sum_probs=118.9
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--C---CHHHHHHhhccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--T---DLGKILACMHEL 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~---D~~kil~~L~~i 79 (392)
.++||||.|.||. ..||+..+.++..|+.. .++..+|+|++|+++. ..+.+.+ . +....+..|..+
T Consensus 4 ~v~~vlD~S~SM~-----~~~~~~~~~al~~~l~~---l~~~~~~~l~~Fs~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (171)
T cd01461 4 EVVFVIDTSGSMS-----GTKIEQTKEALLTALKD---LPPGDYFNIIGFSDTV-EEFSPSSVSATAENVAAAIEYVNRL 74 (171)
T ss_pred eEEEEEECCCCCC-----ChhHHHHHHHHHHHHHh---CCCCCEEEEEEeCCCc-eeecCcceeCCHHHHHHHHHHHHhc
Confidence 5789999999996 35799999999998875 4567799999999874 5555432 2 345667778888
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
.++|++++..+|..|...|+.. +...+.||+|.++. ..++.++.+.++++.+.+|+|++|+||... |...|+.++
T Consensus 75 ~~~g~T~l~~al~~a~~~l~~~--~~~~~~iillTDG~-~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~--~~~~l~~ia 149 (171)
T cd01461 75 QALGGTNMNDALEAALELLNSS--PGSVPQIILLTDGE-VTNESQILKNVREALSGRIRLFTFGIGSDV--NTYLLERLA 149 (171)
T ss_pred CCCCCcCHHHHHHHHHHhhccC--CCCccEEEEEeCCC-CCCHHHHHHHHHHhcCCCceEEEEEeCCcc--CHHHHHHHH
Confidence 8999999999999999888642 33556677777775 345667888888888889999999999865 568999998
Q ss_pred HHHcCCCCceEEEecCCCh
Q 016296 160 AAVNNNDSSHLVHVPTGPN 178 (392)
Q Consensus 160 ~~vn~~d~Sh~v~vp~g~~ 178 (392)
+.++ ..|+.+.....
T Consensus 150 ~~~g----G~~~~~~~~~~ 164 (171)
T cd01461 150 REGR----GIARRIYETDD 164 (171)
T ss_pred HcCC----CeEEEecChHH
Confidence 7663 35555655443
No 27
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.53 E-value=3.8e-13 Score=115.81 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=119.8
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCC--HHHHHHhhccccc-C
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTD--LGKILACMHELDI-G 82 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D--~~kil~~L~~i~~-~ 82 (392)
++|+||+|.||.. .+|...+.++..|+..+...++..++||++|.++ +.+.++++.+ ..+++..|..+.. .
T Consensus 3 i~~llD~S~Sm~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (161)
T cd01450 3 IVFLLDGSESVGP-----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDD-VRVEFSLNDYKSKDDLLKAVKNLKYLG 76 (161)
T ss_pred EEEEEeCCCCcCH-----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCC-ceEEEECCCCCCHHHHHHHHHhcccCC
Confidence 6899999999974 3999999999999999888889999999999986 5888888876 8888888888744 4
Q ss_pred C-cCcHHHHHHHHHHHhcccC--CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 83 G-EMNIAAGIQVAQLALKHRQ--NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 83 G-~~sL~~gL~vA~laLkhr~--~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
| .+++..||..|...+.... .+..++.||+|.++.... ..++.++++++++++|.|++|++|. . +.+.|+.|.
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~-~~~~~~~~~~~~~~~v~v~~i~~g~-~--~~~~l~~la 152 (161)
T cd01450 77 GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDD-GGDPKEAAAKLKDEGIKVFVVGVGP-A--DEEELREIA 152 (161)
T ss_pred CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCC-CcchHHHHHHHHHCCCEEEEEeccc-c--CHHHHHHHh
Confidence 3 8999999999999987643 134555566666665444 3378999999999999999999998 3 467888887
Q ss_pred HHH
Q 016296 160 AAV 162 (392)
Q Consensus 160 ~~v 162 (392)
...
T Consensus 153 ~~~ 155 (161)
T cd01450 153 SCP 155 (161)
T ss_pred CCC
Confidence 543
No 28
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.53 E-value=4.8e-13 Score=121.92 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=110.7
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC---------CCHHHHHHh
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT---------TDLGKILAC 75 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT---------~D~~kil~~ 75 (392)
.++||||.|.||. .+||+.++.++..|+.. .++..+||||+|++. +.++++++ .+..+++..
T Consensus 15 ~vv~llD~SgSM~-----~~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (190)
T cd01463 15 DIVILLDVSGSMT-----GQRLHLAKQTVSSILDT---LSDNDFFNIITFSNE-VNPVVPCFNDTLVQATTSNKKVLKEA 85 (190)
T ss_pred eEEEEEECCCCCC-----cHHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCC-eeEEeeecccceEecCHHHHHHHHHH
Confidence 5899999999996 36999999999999885 467889999999987 57777654 356888999
Q ss_pred hcccccCCcCcHHHHHHHHHHHhcc---c----CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHH--hCCceEEEEEeCC
Q 016296 76 MHELDIGGEMNIAAGIQVAQLALKH---R----QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLK--KNSVAIDIVNFGE 146 (392)
Q Consensus 76 L~~i~~~G~~sL~~gL~vA~laLkh---r----~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LK--knnI~VdiI~fG~ 146 (392)
|..+.++|.+++..||+.|...|+. . ..+...+.||||.++..+. ..++....++.+ ..+|+|++||||.
T Consensus 86 l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~-~~~~~~~~~~~~~~~~~v~i~tigiG~ 164 (190)
T cd01463 86 LDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN-YKEIFDKYNWDKNSEIPVRVFTYLIGR 164 (190)
T ss_pred HhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-HhHHHHHhcccccCCCcEEEEEEecCC
Confidence 9999999999999999999988864 1 0122345677777774433 333333221111 1269999999999
Q ss_pred CCCCcHHHHHHHHHHHc
Q 016296 147 DDDGKPEKLEALLAAVN 163 (392)
Q Consensus 147 e~~~n~~~l~~~~~~vn 163 (392)
+. .|...|+.+....+
T Consensus 165 ~~-~d~~~L~~lA~~~~ 180 (190)
T cd01463 165 EV-TDRREIQWMACENK 180 (190)
T ss_pred cc-ccchHHHHHHhhcC
Confidence 86 46789999986553
No 29
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.53 E-value=5.4e-13 Score=123.90 Aligned_cols=148 Identities=21% Similarity=0.317 Sum_probs=109.0
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcC--CC----CCcEEEEEecCCCceEEECCCC--CHHHHHHhh
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQS--NP----ENTVGILTMGGKGVRVLTTPTT--DLGKILACM 76 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~--NP----es~VGLvtmag~~~~vlvtlT~--D~~kil~~L 76 (392)
-+|++||.|.||. |.||+..++.+..|+..+... +| ..+||||+|++. +.+..+|+. +...++.+|
T Consensus 21 DivfvlD~S~Sm~-----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-a~~~~~L~d~~~~~~~~~ai 94 (193)
T cd01477 21 DIVFVVDNSKGMT-----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-ATVVADLNDLQSFDDLYSQI 94 (193)
T ss_pred eEEEEEeCCCCcc-----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-eEEEEecccccCHHHHHHHH
Confidence 3799999999995 678999999998888865431 33 479999999987 699999983 456777777
Q ss_pred cc----cccCCcCcHHHHHHHHHHHhcc--cCCCCCCcE-EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCC
Q 016296 77 HE----LDIGGEMNIAAGIQVAQLALKH--RQNKNQRQR-IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (392)
Q Consensus 77 ~~----i~~~G~~sL~~gL~vA~laLkh--r~~k~~~~R-IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (392)
+. +..+|++++..||+.|...|+. +..+....| +|||.++.......+....+++||++||.|++||+|...
T Consensus 95 ~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~- 173 (193)
T cd01477 95 QGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDE- 173 (193)
T ss_pred HHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCC-
Confidence 74 3456789999999999999863 111223445 555554433333355778899999999999999999865
Q ss_pred CcHHHHHHHHH
Q 016296 150 GKPEKLEALLA 160 (392)
Q Consensus 150 ~n~~~l~~~~~ 160 (392)
....++++.+
T Consensus 174 -d~~~~~~L~~ 183 (193)
T cd01477 174 -SSNLLDKLGK 183 (193)
T ss_pred -CHHHHHHHHH
Confidence 2445666653
No 30
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.51 E-value=8.5e-13 Score=140.86 Aligned_cols=166 Identities=18% Similarity=0.280 Sum_probs=133.2
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
.++||||.|.||. + +||..+|.++..|+..-+ .+..+||||+|+|..+++++++|.+...+...|..+..+|+
T Consensus 403 ~vvfvvD~SGSM~-~----~rl~~aK~a~~~ll~~ay--~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGg 475 (584)
T PRK13406 403 TTIFVVDASGSAA-L----HRLAEAKGAVELLLAEAY--VRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGG 475 (584)
T ss_pred cEEEEEECCCCCc-H----hHHHHHHHHHHHHHHhhc--CCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCC
Confidence 6899999999994 2 599999999999997632 36789999999998789999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCC----------hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD----------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEK 154 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d----------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~ 154 (392)
|.|..||..|...++....+...++|||+.++-.+.. ..+...+++++++.+|.+.+|.+|... ...
T Consensus 476 TpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~---~~~ 552 (584)
T PRK13406 476 TPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP---QPQ 552 (584)
T ss_pred ChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC---cHH
Confidence 9999999999988765333345677888887766531 145678899999999999999999654 357
Q ss_pred HHHHHHHHcCCCCceEEEecCC-Chhhhhhh
Q 016296 155 LEALLAAVNNNDSSHLVHVPTG-PNALSDVL 184 (392)
Q Consensus 155 l~~~~~~vn~~d~Sh~v~vp~g-~~lLsD~l 184 (392)
++.|++.++ ..|+.+|.- ..-|++++
T Consensus 553 ~~~LA~~~g----g~y~~l~~~~a~~~~~~v 579 (584)
T PRK13406 553 ARALAEAMG----ARYLPLPRADAGRLSQAV 579 (584)
T ss_pred HHHHHHhcC----CeEEECCCCCHHHHHHHH
Confidence 899998774 356667652 33455555
No 31
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.50 E-value=1.9e-12 Score=117.55 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=111.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhh---ccccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACM---HELDI 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L---~~i~~ 81 (392)
.++|+||.|.||... .+. .++.++.++..+. .|..+||||+|++. ++++.++|.+...+..+| ..+.+
T Consensus 6 Dvv~llD~SgSm~~~--~~~----~~~~~~~l~~~~~--~~~~rvglv~Fs~~-~~~~~~l~~~~~~~~~~l~~l~~~~~ 76 (185)
T cd01474 6 DLYFVLDKSGSVAAN--WIE----IYDFVEQLVDRFN--SPGLRFSFITFSTR-ATKILPLTDDSSAIIKGLEVLKKVTP 76 (185)
T ss_pred eEEEEEeCcCchhhh--HHH----HHHHHHHHHHHcC--CCCcEEEEEEecCC-ceEEEeccccHHHHHHHHHHHhccCC
Confidence 479999999999742 123 3466777776653 47899999999987 699999999887776664 56678
Q ss_pred CCcCcHHHHHHHHHHHhc--ccCCCCCCcEEEEEEcCCCC-CChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALK--HRQNKNQRQRIIVFAGSPVK-YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLk--hr~~k~~~~RIVvFvgSp~~-~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
+|++.+..||+.|...|. ....+...+.||+|.++... .........++.++++||.|++||+|. .|.+.|+.+
T Consensus 77 ~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~---~~~~~L~~i 153 (185)
T cd01474 77 SGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD---FLKSQLINI 153 (185)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech---hhHHHHHHH
Confidence 899999999999987763 22222233557777666543 234456778899999999999999953 355678877
Q ss_pred HHHHcCCCCceEEEecCC
Q 016296 159 LAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 159 ~~~vn~~d~Sh~v~vp~g 176 (392)
+. ...|+..+..+
T Consensus 154 A~-----~~~~~f~~~~~ 166 (185)
T cd01474 154 AD-----SKEYVFPVTSG 166 (185)
T ss_pred hC-----CCCeeEecCcc
Confidence 63 22476655443
No 32
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.45 E-value=2.6e-12 Score=118.72 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=111.4
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC----CHHHHHHhhcccc-
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT----DLGKILACMHELD- 80 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~----D~~kil~~L~~i~- 80 (392)
++|+||.|.||...+|.+.+.. .++.+++.+.-.....+||||.|++. +++.+++|. +...++.++..+.
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~----f~~~lv~~l~i~~~~~rvgvv~fs~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~ 77 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIP----FTEKIINNLNISKDKVHVGILLFAEK-NRDVVPFSDEERYDKNELLKKINDLKN 77 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHH----HHHHHHHhCccCCCccEEEEEEecCC-ceeEEecCcccccCHHHHHHHHHHHHh
Confidence 7899999999998888666544 55666666655667889999999987 699999885 4567788777763
Q ss_pred ---cCCcCcHHHHHHHHHHHhcccCC--CCCCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHH
Q 016296 81 ---IGGEMNIAAGIQVAQLALKHRQN--KNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEK 154 (392)
Q Consensus 81 ---~~G~~sL~~gL~vA~laLkhr~~--k~~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~ 154 (392)
.+|++++..||+.|...|....+ +..++-+|||.++.... +...+...++.||++||.|++||+|... ...
T Consensus 78 ~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~---~~e 154 (192)
T cd01473 78 SYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS---ENK 154 (192)
T ss_pred ccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc---HHH
Confidence 47899999999999888754222 12355567777776554 3456889999999999999999999864 346
Q ss_pred HHHHH
Q 016296 155 LEALL 159 (392)
Q Consensus 155 l~~~~ 159 (392)
|+.+.
T Consensus 155 l~~ia 159 (192)
T cd01473 155 LKLLA 159 (192)
T ss_pred HHHhc
Confidence 77775
No 33
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.43 E-value=1.2e-11 Score=108.77 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=110.8
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCC-CceEEECCC--CCHHHHHHhhccccc-
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK-GVRVLTTPT--TDLGKILACMHELDI- 81 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~-~~~vlvtlT--~D~~kil~~L~~i~~- 81 (392)
++|+||.|.||.. +|+.+++++..++..+....+..+||||+|+++ .+.+..+++ .++..++..|+.+..
T Consensus 3 v~~llD~S~Sm~~------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~ 76 (163)
T cd01476 3 LLFVLDSSGSVRG------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFI 76 (163)
T ss_pred EEEEEeCCcchhh------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccC
Confidence 6899999999963 678889999999998776677899999999984 357777776 478889999999874
Q ss_pred CCcCcHHHHHHHHHHHhccc--CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHR--QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr--~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
+|.+++..||..|...|... ..+..++.||||.++....+ ....++.|++ .+|.|+.|++|.....|...|..+
T Consensus 77 gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~i 153 (163)
T cd01476 77 GGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDTEELHSI 153 (163)
T ss_pred CCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCHHHHHHH
Confidence 67899999999999888521 12334566777766544333 5566778888 999999999998732355666665
Q ss_pred H
Q 016296 159 L 159 (392)
Q Consensus 159 ~ 159 (392)
.
T Consensus 154 a 154 (163)
T cd01476 154 T 154 (163)
T ss_pred h
Confidence 3
No 34
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.42 E-value=1.1e-11 Score=111.07 Aligned_cols=147 Identities=19% Similarity=0.171 Sum_probs=107.2
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC-----ceEEE--CCCCCH-HHHHHhh
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-----VRVLT--TPTTDL-GKILACM 76 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~-----~~vlv--tlT~D~-~kil~~L 76 (392)
+++|+||.|.||... +||+.++.++..|+..... +..++||++|.+.. ..++. +.+... ..+...|
T Consensus 2 ~v~~llD~SgSM~~~----~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (174)
T cd01454 2 AVTLLLDLSGSMRSD----RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRL 75 (174)
T ss_pred EEEEEEECCCCCCCC----cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHH
Confidence 589999999999854 8999999999999887664 78999999999872 12333 222221 3567788
Q ss_pred cccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCC---------hhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 77 HELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD---------RKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 77 ~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d---------~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
..+.++|.+.+..||..|...|+.+ +..++.||+|.++..+.. ..+..+.++.+++.||.|++||+|..
T Consensus 76 ~~~~~~g~T~~~~al~~a~~~l~~~--~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~ 153 (174)
T cd01454 76 AALSPGGNTRDGAAIRHAAERLLAR--PEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRD 153 (174)
T ss_pred HccCCCCCCcHHHHHHHHHHHHhcC--CCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCc
Confidence 8899999999999999999998764 234555666665543321 12333448899999999999999998
Q ss_pred CC-CcHHHHHHHH
Q 016296 148 DD-GKPEKLEALL 159 (392)
Q Consensus 148 ~~-~n~~~l~~~~ 159 (392)
.. .+.+-++.+.
T Consensus 154 ~~~~~~~~~~~~~ 166 (174)
T cd01454 154 ATTVDKEYLKNIF 166 (174)
T ss_pred cccchHHHHHHhh
Confidence 62 1345555544
No 35
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.42 E-value=3e-12 Score=141.17 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=113.8
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC-----CCHHHHHHhhccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT-----TDLGKILACMHEL 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT-----~D~~kil~~L~~i 79 (392)
-++||||.|.||..+| ||...+.|+..|+...+ +|..+||||+|.+. +.++.+|+ .++..+...|. +
T Consensus 306 ~VVLVLDvSGSM~g~d----RL~~lkqAA~~fL~~~l--~~~DrVGLVtFsss-A~vl~pLt~Its~~dr~aL~~~L~-~ 377 (863)
T TIGR00868 306 IVCLVLDKSGSMTVED----RLKRMNQAAKLFLLQTV--EKGSWVGMVTFDSA-AYIKNELIQITSSAERDALTANLP-T 377 (863)
T ss_pred eEEEEEECCccccccC----HHHHHHHHHHHHHHHhC--CCCCEEEEEEECCc-eeEeeccccCCcHHHHHHHHHhhc-c
Confidence 3789999999998765 99999999999987754 57899999999987 58888776 25555555554 4
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
.++|+++|..||+.|...|+++..+...+.|||+.++... ....+++.+++++|+|++|+||... ...|+.++
T Consensus 378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn----~~~~~l~~lk~~gVtI~TIg~G~da---d~~L~~IA 450 (863)
T TIGR00868 378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDN----TISSCFEEVKQSGAIIHTIALGPSA---AKELEELS 450 (863)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCC----CHHHHHHHHHHcCCEEEEEEeCCCh---HHHHHHHH
Confidence 5789999999999999999886444456778888766432 2345677889999999999999865 25689998
Q ss_pred HHHc
Q 016296 160 AAVN 163 (392)
Q Consensus 160 ~~vn 163 (392)
+.++
T Consensus 451 ~~TG 454 (863)
T TIGR00868 451 DMTG 454 (863)
T ss_pred HhcC
Confidence 7653
No 36
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.42 E-value=1.6e-11 Score=115.15 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=117.6
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhccccc-
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDI- 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i~~- 81 (392)
-++|+||.|.||. +++|+.++.++..|++.+.-.+...+||||+|+.. +.+..+|+ .+...+..+|..+..
T Consensus 4 DlvfllD~S~Sm~-----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 77 (224)
T cd01475 4 DLVFLIDSSRSVR-----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-VKQEFPLGRFKSKADLKRAVRRMEYL 77 (224)
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-eeEEecccccCCHHHHHHHHHhCcCC
Confidence 4799999999995 67899999999999998765556789999999987 69999998 567788999998854
Q ss_pred CCcCcHHHHHHHHHHH-hcc----cCCCC-CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016296 82 GGEMNIAAGIQVAQLA-LKH----RQNKN-QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (392)
Q Consensus 82 ~G~~sL~~gL~vA~la-Lkh----r~~k~-~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l 155 (392)
+|.+....||..|... |.. |+... .++-+|||.++... +++...+++||+.||.|++||+|.. +...|
T Consensus 78 ~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~---~~~~~~a~~lk~~gv~i~~VgvG~~---~~~~L 151 (224)
T cd01475 78 ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ---DDVSEVAAKARALGIEMFAVGVGRA---DEEEL 151 (224)
T ss_pred CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc---ccHHHHHHHHHHCCcEEEEEeCCcC---CHHHH
Confidence 6678999999988754 432 32211 13445566566432 3477889999999999999999973 34667
Q ss_pred HHHHHHHcCCCCceEEEecCC
Q 016296 156 EALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 156 ~~~~~~vn~~d~Sh~v~vp~g 176 (392)
+.+. ......|+..+..-
T Consensus 152 ~~ia---s~~~~~~~f~~~~~ 169 (224)
T cd01475 152 REIA---SEPLADHVFYVEDF 169 (224)
T ss_pred HHHh---CCCcHhcEEEeCCH
Confidence 7765 22234687777543
No 37
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.40 E-value=9.8e-12 Score=111.85 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=110.5
Q ss_pred ceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCC---CCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc
Q 016296 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSN---PENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD 80 (392)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~N---Pes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~ 80 (392)
=.++|+||.|.||.. .+|...+.++..|+..+.... +..+||||+|.+. ++++.++|..... .+..+.
T Consensus 4 ~~v~~llD~SgSM~~-----~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~-a~~~~~l~~~~~~---~~~~l~ 74 (176)
T cd01464 4 LPIYLLLDTSGSMAG-----EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSA-ARVIVPLTPLESF---QPPRLT 74 (176)
T ss_pred CCEEEEEECCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCC-ceEecCCccHHhc---CCCccc
Confidence 357999999999954 468889999999998765322 5678999999986 6999999864322 244567
Q ss_pred cCCcCcHHHHHHHHHHHhcccCC-------CCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQN-------KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~-------k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (392)
.+|+|++..||..|...|+.+.. ...++.||+|.++..+.+.....+..+.+++.++.|++||+|.. .|.+
T Consensus 75 ~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~--~~~~ 152 (176)
T cd01464 75 ASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK--ADLD 152 (176)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc--cCHH
Confidence 88999999999999998865311 12344677777775544455555778888888999999999995 4788
Q ss_pred HHHHHHH
Q 016296 154 KLEALLA 160 (392)
Q Consensus 154 ~l~~~~~ 160 (392)
.|+.|..
T Consensus 153 ~L~~ia~ 159 (176)
T cd01464 153 TLKQITE 159 (176)
T ss_pred HHHHHHC
Confidence 8988873
No 38
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.39 E-value=2.9e-11 Score=105.66 Aligned_cols=135 Identities=10% Similarity=0.122 Sum_probs=103.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
.++||||.|.||.. +|+..++.++..|+..... +..+|+||+|.++......+.+.+..+++..|..+.++|+
T Consensus 2 ~v~illD~SgSM~~-----~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg 74 (152)
T cd01462 2 PVILLVDQSGSMYG-----APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGG 74 (152)
T ss_pred CEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCC
Confidence 47999999999963 4888889988888887654 4679999999988433334567888899999998889999
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+++..+|..+...++.. +..+..||+|.++.-..++..+.+.++..++.+|+|++|++|...
T Consensus 75 T~l~~al~~a~~~l~~~--~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 136 (152)
T cd01462 75 TDINKALRYALELIERR--DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDHG 136 (152)
T ss_pred cCHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCCC
Confidence 99999999998887652 224456777766632334455555566777778999999999964
No 39
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.37 E-value=2.3e-11 Score=106.62 Aligned_cols=166 Identities=21% Similarity=0.282 Sum_probs=121.4
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC--CHHHHHHhh-ccc-cc
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--DLGKILACM-HEL-DI 81 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~--D~~kil~~L-~~i-~~ 81 (392)
++|+||.|.||.. .+|+.+++++..|+..+...++..+||||+|++. +.++.+++. +..+++..+ ..+ ..
T Consensus 2 ivflvD~S~sm~~-----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (178)
T PF00092_consen 2 IVFLVDTSGSMSG-----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-ARVLFSLTDYQSKNDLLNAINDSIPSS 75 (178)
T ss_dssp EEEEEE-STTSCH-----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-EEEEEETTSHSSHHHHHHHHHTTGGCC
T ss_pred EEEEEeCCCCCch-----HHHHHHHHHHHHHHHhhhccccccccceeeeecc-ccccccccccccccccccccccccccc
Confidence 7999999999987 7799999999999998878999999999999988 588888885 478888888 554 66
Q ss_pred CCcCcHHHHHHHHHHHhccc---CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr---~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
+|.+++..||..|...|..+ ..+..++-||+|.++....+........+..++.+|.+..||+ .. .+.+.|+.|
T Consensus 76 ~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~~~~ig~--~~-~~~~~l~~l 152 (178)
T PF00092_consen 76 GGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKSNGIKVIAIGI--DN-ADNEELREL 152 (178)
T ss_dssp BSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHHCTEEEEEEEE--SC-CHHHHHHHH
T ss_pred chhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHhcCcEEEEEec--Cc-CCHHHHHHH
Confidence 78999999999999998754 2234556677777776555433444444444445888888877 33 466788888
Q ss_pred HHHHcCCCCceEEEecCCChhhhhh
Q 016296 159 LAAVNNNDSSHLVHVPTGPNALSDV 183 (392)
Q Consensus 159 ~~~vn~~d~Sh~v~vp~g~~lLsD~ 183 (392)
.... +...|+..++.-. .|+++
T Consensus 153 a~~~--~~~~~~~~~~~~~-~l~~~ 174 (178)
T PF00092_consen 153 ASCP--TSEGHVFYLADFS-DLSQI 174 (178)
T ss_dssp SHSS--TCHHHEEEESSHH-HHHHH
T ss_pred hCCC--CCCCcEEEcCCHH-HHHHH
Confidence 6422 2456888776543 35544
No 40
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.36 E-value=2.8e-11 Score=129.43 Aligned_cols=151 Identities=15% Similarity=0.220 Sum_probs=122.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
.++||||.|.||. .+||..++.++..|+..... +..+||||+|++..+++++++|.+...+...|..+.++|+
T Consensus 409 ~v~fvvD~SGSM~-----~~rl~~aK~av~~Ll~~~~~--~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGg 481 (589)
T TIGR02031 409 LLIFVVDASGSAA-----VARMSEAKGAVELLLGEAYV--HRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGG 481 (589)
T ss_pred eEEEEEECCCCCC-----hHHHHHHHHHHHHHHHhhcc--CCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3789999999994 36999999999999986432 4679999999988778999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC--C-------------hhhHHHHHHHHHhCCceEEEEEeCCCCC
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY--D-------------RKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~--d-------------~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (392)
|.|..||..|...++....+..+.+||+|.++-.+. + ..++..+++++++.+|.+.+|++|...
T Consensus 482 TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~- 560 (589)
T TIGR02031 482 TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRF- 560 (589)
T ss_pred CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCC-
Confidence 999999999998886422233456788887765542 1 245678899999999999999999764
Q ss_pred CcHHHHHHHHHHHc
Q 016296 150 GKPEKLEALLAAVN 163 (392)
Q Consensus 150 ~n~~~l~~~~~~vn 163 (392)
.....++.|++..+
T Consensus 561 ~~~~~~~~lA~~~~ 574 (589)
T TIGR02031 561 VSTGFAQKLARKMG 574 (589)
T ss_pred ccchHHHHHHHhcC
Confidence 34557999987664
No 41
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.32 E-value=8.8e-11 Score=126.47 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=122.2
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
.++|+||.|.||.. .+||..++.++..|+..-+ .+..+||||+|+|..+++++++|.+...+...|..+.++|+
T Consensus 467 ~vv~vvD~SgSM~~----~~rl~~ak~a~~~ll~~a~--~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~ 540 (633)
T TIGR02442 467 LVIFVVDASGSMAA----RGRMAAAKGAVLSLLRDAY--QKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGR 540 (633)
T ss_pred eEEEEEECCccCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCC
Confidence 58899999999973 3799999999988886533 24789999999987789999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcc--cCCCCCCcEEEEEEcCCCCC------ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 016296 85 MNIAAGIQVAQLALKH--RQNKNQRQRIIVFAGSPVKY------DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLE 156 (392)
Q Consensus 85 ~sL~~gL~vA~laLkh--r~~k~~~~RIVvFvgSp~~~------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~ 156 (392)
|.|..||..|...|+. +..+..+..||||.++..+. ..++...+++++++.+|.+.+|+.+... .....++
T Consensus 541 Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~-~~~~~~~ 619 (633)
T TIGR02442 541 TPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGF-VRLGLAE 619 (633)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCC-cchhHHH
Confidence 9999999999998873 12233455566666664432 1245678899999999999999987754 4567899
Q ss_pred HHHHHHc
Q 016296 157 ALLAAVN 163 (392)
Q Consensus 157 ~~~~~vn 163 (392)
.|++.++
T Consensus 620 ~lA~~~g 626 (633)
T TIGR02442 620 DLARALG 626 (633)
T ss_pred HHHHhhC
Confidence 9998774
No 42
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.32 E-value=2.7e-11 Score=113.09 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=108.6
Q ss_pred EEEEEeCCccccCCC-C---CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEEC------CCCCH---HHH
Q 016296 6 TMICIDNSEWMRNGD-Y---SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT------PTTDL---GKI 72 (392)
Q Consensus 6 ~~IvIDnSesMrngD-~---~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvt------lT~D~---~ki 72 (392)
+||+||.|.||..-+ | ..+||++.+..++.|++ |.+.-+..+|| ++|.++ .+.+ ||.|. ..+
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~-f~~~r~~DriG---~~g~~~-~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDG-FEDKIQYDIIG---HSGDGP-CVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHH-HHHhCccceee---ecCccc-ccCccccccCcccchhHHHHH
Confidence 799999999996433 2 25999999999888863 34466788999 466653 3344 44444 455
Q ss_pred HHhhcccccC--C-cCcHHHHHHHHHHHhc-ccCCCCCCcEEEEEEcCCCCCChhhHHHH-HHHHHhCCceEEEEEeCCC
Q 016296 73 LACMHELDIG--G-EMNIAAGIQVAQLALK-HRQNKNQRQRIIVFAGSPVKYDRKVMEMI-GKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 73 l~~L~~i~~~--G-~~sL~~gL~vA~laLk-hr~~k~~~~RIVvFvgSp~~~d~~~l~~~-ak~LKknnI~VdiI~fG~e 147 (392)
..-|+.++++ | +|. .||.+|...|+ +. +...+.||+|.++..+...-++.++ ++.+++.||+|++|++|..
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~--~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~ 153 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKE--DFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL 153 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhcC--cCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC
Confidence 6666666553 4 455 99999999997 64 4456667777787766555677775 6888999999999999986
Q ss_pred CCCcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 148 DDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 148 ~~~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
.. +.|+.+.+.+ +|.||..-..
T Consensus 154 d~---~~l~~iA~~t---gG~~F~A~d~ 175 (191)
T cd01455 154 SD---EADQLQRELP---AGKAFVCMDT 175 (191)
T ss_pred CH---HHHHHHHhCC---CCcEEEeCCH
Confidence 52 4577666544 4566665544
No 43
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.29 E-value=1.4e-10 Score=122.95 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=111.2
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCH----HHHHHhhcc--
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL----GKILACMHE-- 78 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~----~kil~~L~~-- 78 (392)
-++|+||.|.||. .++++..++..+..|+..+.-+.-..+|||++|++. +.++++++... ..++..|..
T Consensus 44 DIvFLLD~SgSMg----~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-~r~vfpL~s~~s~Dk~~aL~~I~sL~ 118 (576)
T PTZ00441 44 DLYLLVDGSGSIG----YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-TTELIRLGSGASKDKEQALIIVKSLR 118 (576)
T ss_pred eEEEEEeCCCccC----CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-ceEEEecCCCccccHHHHHHHHHHHH
Confidence 4799999999996 357788899999999998866656678888999987 68888887543 456666654
Q ss_pred --cccCCcCcHHHHHHHHHHHhcccCCCC-CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016296 79 --LDIGGEMNIAAGIQVAQLALKHRQNKN-QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (392)
Q Consensus 79 --i~~~G~~sL~~gL~vA~laLkhr~~k~-~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l 155 (392)
+.++|.|++..||..|...|+++.++. ..+-||||.++.. .+..+..+.+++||+.||.|.+|++|... |.+.|
T Consensus 119 ~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~s-ns~~dvleaAq~LR~~GVeI~vIGVG~g~--n~e~L 195 (576)
T PTZ00441 119 KTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIP-NSKYRALEESRKLKDRNVKLAVIGIGQGI--NHQFN 195 (576)
T ss_pred hhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCC-CCcccHHHHHHHHHHCCCEEEEEEeCCCc--CHHHH
Confidence 457899999999999988887653222 3344566655543 33456778899999999999999999864 55666
Q ss_pred HHHH
Q 016296 156 EALL 159 (392)
Q Consensus 156 ~~~~ 159 (392)
+.++
T Consensus 196 rlIA 199 (576)
T PTZ00441 196 RLLA 199 (576)
T ss_pred HHHh
Confidence 6554
No 44
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.25 E-value=7.7e-10 Score=99.89 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=116.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcccccC
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHELDIG 82 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~i~~~ 82 (392)
-++++||.|.|+. +..|+.++..+..|++.+.=.+...+||||++++. +.+...+. .+...++.+|.++...
T Consensus 2 DivfllD~S~Si~-----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-~~~~~~l~~~~~~~~l~~~i~~i~~~ 75 (165)
T cd01481 2 DIVFLIDGSDNVG-----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-PRPEFYLNTHSTKADVLGAVRRLRLR 75 (165)
T ss_pred CEEEEEeCCCCcC-----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-eeEEEeccccCCHHHHHHHHHhcccC
Confidence 3789999999984 78899999999999998765666789999999987 58888876 4778899999998654
Q ss_pred -C-cCcHHHHHHHHHHHhcccC-----CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHH
Q 016296 83 -G-EMNIAAGIQVAQLALKHRQ-----NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKL 155 (392)
Q Consensus 83 -G-~~sL~~gL~vA~laLkhr~-----~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l 155 (392)
| .++...||..+...+-... .++.++.+|||.++... +++.+.++.||+.||.|..||.|. .|.+.|
T Consensus 76 ~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~---d~~~~~a~~lr~~gv~i~~vG~~~---~~~~eL 149 (165)
T cd01481 76 GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN---ADLAEL 149 (165)
T ss_pred CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCc---chHHHHHHHHHHCCcEEEEEeCCc---CCHHHH
Confidence 4 4799999998876543321 12344556677676543 357889999999999999999983 355677
Q ss_pred HHHHHHHcCCCCceEEEec
Q 016296 156 EALLAAVNNNDSSHLVHVP 174 (392)
Q Consensus 156 ~~~~~~vn~~d~Sh~v~vp 174 (392)
+.+. . +.+|+.++.
T Consensus 150 ~~ia---s--~p~~vf~v~ 163 (165)
T cd01481 150 QQIA---F--DPSFVFQVS 163 (165)
T ss_pred HHHh---C--CCccEEEec
Confidence 7765 2 335776664
No 45
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.22 E-value=2.9e-10 Score=99.63 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=111.5
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECC----C-CCHHHHHHhhccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTP----T-TDLGKILACMHEL 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtl----T-~D~~kil~~L~~i 79 (392)
-++|+||.|.||.-.- ..++++++.+++. ..|..++.||+|+.. +..+.+- | .+...++..|..+
T Consensus 2 ~vvilvD~S~Sm~g~~------~~~k~al~~~l~~---L~~~d~fnii~f~~~-~~~~~~~~~~~~~~~~~~a~~~I~~~ 71 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK------ELVKDALRAILRS---LPPGDRFNIIAFGSS-VRPLFPGLVPATEENRQEALQWIKSL 71 (155)
T ss_pred eEEEEEeCCCCCCCcH------HHHHHHHHHHHHh---CCCCCEEEEEEeCCE-eeEcchhHHHHhHHHHHHHHHHHHHh
Confidence 4799999999996432 8899999999986 779999999999986 4544432 1 4566778888999
Q ss_pred cc-CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 80 DI-GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 80 ~~-~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
.+ .|++++..+|+.|...+. .+.....||+|.++.....+..+...+++.. .+|+|.+|+||... +...|++|
T Consensus 72 ~~~~G~t~l~~aL~~a~~~~~---~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~~--~~~~L~~L 145 (155)
T PF13768_consen 72 EANSGGTDLLAALRAALALLQ---RPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSDA--DADFLREL 145 (155)
T ss_pred cccCCCccHHHHHHHHHHhcc---cCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECChh--HHHHHHHH
Confidence 98 999999999998887762 3456777888886654445566777776643 68999999999965 57999999
Q ss_pred HHHHc
Q 016296 159 LAAVN 163 (392)
Q Consensus 159 ~~~vn 163 (392)
.+..+
T Consensus 146 A~~~~ 150 (155)
T PF13768_consen 146 ARATG 150 (155)
T ss_pred HHcCC
Confidence 87664
No 46
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.19 E-value=7.6e-10 Score=101.89 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=111.0
Q ss_pred ceEEEEEeCCccccCCC--CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc
Q 016296 4 EATMICIDNSEWMRNGD--YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI 81 (392)
Q Consensus 4 Ea~~IvIDnSesMrngD--~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~ 81 (392)
.-++|+||.|.||...+ ..|+||..++.++..++.... ......++++.|.+.. ..+.++| ...+...+.++.+
T Consensus 3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~-~~D~d~i~l~~f~~~~-~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCE-EYDSDGITVYLFSGDF-RRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHH-hcCCCCeEEEEecCCc-cccCCcC--HHHHHHHHhcCCC
Confidence 35789999999999887 678999999999999997644 3445679999998874 5556776 7788888888889
Q ss_pred CCcCcHHHHHHHHHHHhcccC--CCC-C-CcEEEEEEcCCCCCChhh----HHHHHHHHHh-CCceEEEEEeCCCCCCcH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQ--NKN-Q-RQRIIVFAGSPVKYDRKV----MEMIGKKLKK-NSVAIDIVNFGEDDDGKP 152 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~--~k~-~-~~RIVvFvgSp~~~d~~~----l~~~ak~LKk-nnI~VdiI~fG~e~~~n~ 152 (392)
.|.+++..+|+.+...+..+. +.. + ..-||||.++... +... |.+.+++|++ ++|.+++|++|... ...
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~-d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~-~~~ 156 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPD-DKDAVERVIIKASDELDADNELAISFLQIGRDP-AAT 156 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCC-cHHHHHHHHHHHHHhhccccCceEEEEEeCCcH-HHH
Confidence 999999999999875544321 111 1 2335555555433 3333 3455555544 47999999999976 567
Q ss_pred HHHHHHHHHH
Q 016296 153 EKLEALLAAV 162 (392)
Q Consensus 153 ~~l~~~~~~v 162 (392)
..|+.|-+..
T Consensus 157 ~~L~~ld~~~ 166 (199)
T cd01457 157 AFLKALDDQL 166 (199)
T ss_pred HHHHHHhHHH
Confidence 7788887654
No 47
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.17 E-value=2e-09 Score=104.34 Aligned_cols=151 Identities=16% Similarity=0.244 Sum_probs=127.0
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcC
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEM 85 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~ 85 (392)
++|+||-|.||+. ..|+.++|-++..|++.=.+. .++|+||+|.|..++|+++||.+...+...|..+.++|.|
T Consensus 81 vvfvVDASgSM~~----~~Rm~aaKG~~~~lL~dAYq~--RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~T 154 (261)
T COG1240 81 IVFVVDASGSMAA----RRRMAAAKGAALSLLRDAYQR--RDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKT 154 (261)
T ss_pred EEEEEeCcccchh----HHHHHHHHHHHHHHHHHHHHc--cceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCC
Confidence 7999999999984 569999999999999876555 7899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcccC--CCCCCcEEEEEEcCCCCC----C-hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 86 NIAAGIQVAQLALKHRQ--NKNQRQRIIVFAGSPVKY----D-RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 86 sL~~gL~vA~laLkhr~--~k~~~~RIVvFvgSp~~~----d-~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
-|..||++|...|.... ++.....+||+.++-.+. + ..+...++.++...++.+-||++-... .-..+.+.+
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~-~~~g~~~~i 233 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE-VRLGLAEEI 233 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc-ccccHHHHH
Confidence 99999999999886532 344666677777665432 3 356788899999999999999998876 456677888
Q ss_pred HHHHc
Q 016296 159 LAAVN 163 (392)
Q Consensus 159 ~~~vn 163 (392)
+.+..
T Consensus 234 A~~~G 238 (261)
T COG1240 234 ARASG 238 (261)
T ss_pred HHHhC
Confidence 87663
No 48
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.06 E-value=4.6e-09 Score=112.26 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=108.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC-----CHHHHHHhhccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT-----DLGKILACMHEL 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~-----D~~kil~~L~~i 79 (392)
.++||||.|.||.. .+++.++.++..++.. .+|..+++||.|.+. ++++.+.+. +..+++.+|..+
T Consensus 273 ~vvfvlD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l 343 (596)
T TIGR03788 273 ELVFVIDTSGSMAG-----ESIEQAKSALLLALDQ---LRPGDRFNIIQFDSD-VTLLFPVPVPATAHNLARARQFVAGL 343 (596)
T ss_pred eEEEEEECCCCCCC-----ccHHHHHHHHHHHHHh---CCCCCEEEEEEECCc-ceEeccccccCCHHHHHHHHHHHhhC
Confidence 58899999999984 3688889999888875 678999999999887 577765432 345677888999
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
.++|+++|..+|+.|...+... .+...++||+|.++.. .++..+.+.++. +..+++|++||||... |...|+.+.
T Consensus 344 ~a~GgT~l~~aL~~a~~~~~~~-~~~~~~~iillTDG~~-~~~~~~~~~~~~-~~~~~ri~tvGiG~~~--n~~lL~~lA 418 (596)
T TIGR03788 344 QADGGTEMAGALSAALRDDGPE-SSGALRQVVFLTDGAV-GNEDALFQLIRT-KLGDSRLFTVGIGSAP--NSYFMRKAA 418 (596)
T ss_pred CCCCCccHHHHHHHHHHhhccc-CCCceeEEEEEeCCCC-CCHHHHHHHHHH-hcCCceEEEEEeCCCc--CHHHHHHHH
Confidence 9999999999999988664332 2234456777777753 345666666543 3457999999999874 678899888
Q ss_pred HH
Q 016296 160 AA 161 (392)
Q Consensus 160 ~~ 161 (392)
+.
T Consensus 419 ~~ 420 (596)
T TIGR03788 419 QF 420 (596)
T ss_pred Hc
Confidence 64
No 49
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=1.4e-07 Score=92.91 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=121.5
Q ss_pred eEEEEEeCCcccc---CCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC---------CH---
Q 016296 5 ATMICIDNSEWMR---NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT---------DL--- 69 (392)
Q Consensus 5 a~~IvIDnSesMr---ngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~---------D~--- 69 (392)
-++|+||.+..-+ ..+=.+.-|....+++-.|++.++-.|..|+|.||+....+...|-|-+. +.
T Consensus 4 lL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~ 83 (279)
T TIGR00627 4 LLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRL 83 (279)
T ss_pred EEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCccccccccccccccc
Confidence 3689999997765 22212567888999999999999999999999999998777666665321 11
Q ss_pred ------------HHHHHhhccc----cc----CCcCcHHHHHHHHHHHhcccC-----CCCCCcEEEEEEcCCCCC-Chh
Q 016296 70 ------------GKILACMHEL----DI----GGEMNIAAGIQVAQLALKHRQ-----NKNQRQRIIVFAGSPVKY-DRK 123 (392)
Q Consensus 70 ------------~kil~~L~~i----~~----~G~~sL~~gL~vA~laLkhr~-----~k~~~~RIVvFvgSp~~~-d~~ 123 (392)
..++..|.++ .. .+++.|.-||.+|+-.+..+. ....+.||+||.+|+... .-.
T Consensus 84 ~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi 163 (279)
T TIGR00627 84 RELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYI 163 (279)
T ss_pred cchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHH
Confidence 0134444322 11 146778889998876653321 124588999999987543 233
Q ss_pred hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhhhc
Q 016296 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l~s 186 (392)
.+..++..++|.||+||+|+++.+. ...+|+++++.|+| .| .+++...+ |.+.|+.
T Consensus 164 ~~mn~Ifaaqk~~I~Idv~~L~~e~--~~~~lqQa~~~TgG---~Y-~~~~~~~~-L~q~L~~ 219 (279)
T TIGR00627 164 PLMNCIFSAQKQNIPIDVVSIGGDF--TSGFLQQAADITGG---SY-LHVKKPQG-LLQYLMT 219 (279)
T ss_pred HHHHHHHHHHHcCceEEEEEeCCcc--ccHHHHHHHHHhCC---EE-eccCCHhH-HHHHHHH
Confidence 5679999999999999999999761 23599999999964 34 44443334 6676655
No 50
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=98.67 E-value=5.7e-07 Score=83.95 Aligned_cols=140 Identities=24% Similarity=0.321 Sum_probs=94.3
Q ss_pred eEEEEEeCCccccCCCCCC-cHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCC------------CceEEECCCCCHHH
Q 016296 5 ATMICIDNSEWMRNGDYSP-SRLRAQADAVSLICGAKTQSNPENTVGILTMGGK------------GVRVLTTPTTDLGK 71 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~P-tRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~------------~~~vlvtlT~D~~k 71 (392)
||++|||+|.+|-...-.. .+|..+.+++..++..|.-.+|...||||.++-. ...++.+++.=--+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 6999999999997443221 2899999999999999999999999999999732 33566666644444
Q ss_pred HHHhhccc-cc----------CCcCcHHHHHHHHHHHhcc--cCCCCCCcEEEEEEcCCCCC-ChhhHHHHHHH-----H
Q 016296 72 ILACMHEL-DI----------GGEMNIAAGIQVAQLALKH--RQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKK-----L 132 (392)
Q Consensus 72 il~~L~~i-~~----------~G~~sL~~gL~vA~laLkh--r~~k~~~~RIVvFvgSp~~~-d~~~l~~~ak~-----L 132 (392)
.+..|..+ .. ....+|..+|.+|...|++ ...+...+|||+|....... +...+..++++ +
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~Dl 160 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKDL 160 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhccccc
Confidence 44455443 33 4578999999999999986 33455678888888443333 45555555555 9
Q ss_pred HhCCceEEEEEe
Q 016296 133 KKNSVAIDIVNF 144 (392)
Q Consensus 133 KknnI~VdiI~f 144 (392)
+.++|.+.++.+
T Consensus 161 ~~~~i~~~~~~l 172 (224)
T PF03731_consen 161 QDNGIEIELFFL 172 (224)
T ss_dssp HHHTEEEEEEEC
T ss_pred hhcCcceeEeec
Confidence 999999999999
No 51
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=98.49 E-value=5.1e-06 Score=89.34 Aligned_cols=144 Identities=13% Similarity=0.221 Sum_probs=104.9
Q ss_pred cceEEEEEeCCccccCCCC---CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCC---------CceEEECCCCCHH
Q 016296 3 LEATMICIDNSEWMRNGDY---SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK---------GVRVLTTPTTDLG 70 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~---~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~---------~~~vlvtlT~D~~ 70 (392)
-||+++|||+|.+|-...- ..++|..+..++..+++.+.=.+|...||||.|+-+ .+.|+.+|..=--
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a 89 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 89 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCH
Confidence 4899999999999986321 258999999999999999999999999999999743 3345666653333
Q ss_pred HHHHhhcccccC------------Cc-CcHHHHHHHHHHHhcccCCCCCCcEEEEEEc--CCCCCCh---hhHHHHHHHH
Q 016296 71 KILACMHELDIG------------GE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAG--SPVKYDR---KVMEMIGKKL 132 (392)
Q Consensus 71 kil~~L~~i~~~------------G~-~sL~~gL~vA~laLkhr~~k~~~~RIVvFvg--Sp~~~d~---~~l~~~ak~L 132 (392)
+.+..|..+..+ ++ .+|.++|-+|...|.....+..++||++|.. .|...+. ......|+.|
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 443444433221 22 4889999999999976544556789999984 4443321 1225579999
Q ss_pred HhCCceEEEEEeCC
Q 016296 133 KKNSVAIDIVNFGE 146 (392)
Q Consensus 133 KknnI~VdiI~fG~ 146 (392)
++.||.+.++.+..
T Consensus 170 ~~~gi~ielf~l~~ 183 (584)
T TIGR00578 170 RDTGIFLDLMHLKK 183 (584)
T ss_pred HhcCeEEEEEecCC
Confidence 99999999996653
No 52
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.42 E-value=7.5e-06 Score=86.31 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=99.5
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~ 84 (392)
-++||||.|.||. | + |. .+++..+-.++.. -......+||+.|.+.....-.+.......++.+|... .+|+
T Consensus 325 piII~VDtSGSM~-G-~-ke--~~AkalAaAL~~i--Al~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GG 396 (487)
T PRK10997 325 PFIVCVDTSGSMG-G-F-NE--QCAKAFCLALMRI--ALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGG 396 (487)
T ss_pred cEEEEEECCCCCC-C-C-HH--HHHHHHHHHHHHH--HHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCC
Confidence 3799999999996 3 2 33 3444322222221 13446789999999875333234455678888888765 5899
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-ChhhHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d~~~l~~~ak~LKk-nnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
|+|..+|..+...++.+ ..++-.||+|+.-... -+.++.+..+.||+ .+.+++.|.+|... |..+++.| +
T Consensus 397 TDl~~aL~~al~~l~~~---~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~--~p~l~~if-D-- 468 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGR---EWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHG--KPGIMRIF-D-- 468 (487)
T ss_pred CcHHHHHHHHHHHHccc---ccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCC--CchHHHhc-C--
Confidence 99999999998888652 2333344444433332 36789999999988 89999999999643 44555443 2
Q ss_pred cCCCCceEEEecCC
Q 016296 163 NNNDSSHLVHVPTG 176 (392)
Q Consensus 163 n~~d~Sh~v~vp~g 176 (392)
|+....+|
T Consensus 469 ------~~W~~d~~ 476 (487)
T PRK10997 469 ------HIWRFDTG 476 (487)
T ss_pred ------eeeEecCC
Confidence 55555655
No 53
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.37 E-value=2e-05 Score=74.48 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=120.7
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC-CCHHHHHHhhcc----c
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT-TDLGKILACMHE----L 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT-~D~~kil~~L~~----i 79 (392)
.|++|||.|-||+ +=|+--+.+...+=+--+... -.+..+|=+.+|+.+ +..+-++| .|+......+|. +
T Consensus 3 rV~LVLD~SGSM~-~~yk~G~vQ~~~Er~lalA~~---~DdDG~i~v~~Fs~~-~~~~~~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 3 RVYLVLDISGSMR-PLYKDGTVQRVVERILALAAQ---FDDDGEIDVWFFSTE-FDRLPDVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred EEEEEEeCCCCCc-hhhhCccHHHHHHHHHHHHhh---cCCCCceEEEEeCCC-CCcCCCcCHHHHHHHHHHHhcccccc
Confidence 4789999999998 455555666655544444442 445678999999976 46666777 445555555543 2
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
..-|.++..-+|+-+......+.....+ ..|+|+..-...+...+.++++.+.+..|....||||...+ .+|++|-
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P-~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~f---~fL~kLD 153 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAP-ALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSNF---GFLEKLD 153 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCC-eEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCcc---hHHHHhh
Confidence 4457799999999988877644322223 46777744344578889999999999999999999999876 7899987
Q ss_pred HHHcCC--CCceEEEecCCC----hhhhhhhh
Q 016296 160 AAVNNN--DSSHLVHVPTGP----NALSDVLI 185 (392)
Q Consensus 160 ~~vn~~--d~Sh~v~vp~g~----~lLsD~l~ 185 (392)
+ +.+- ||..|+++..-+ .-|+|.|+
T Consensus 154 ~-l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 154 D-LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred c-cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 5 4332 788888887632 33677775
No 54
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.31 E-value=1.1e-05 Score=77.67 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=102.3
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceE-----------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRV----------------------- 61 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~v----------------------- 61 (392)
+.++|||+|..-.+.- =++..++++...+...-..+|...||||||... ..+
T Consensus 5 ~~~FvIDvs~~a~~~g----~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~-v~~y~l~~~~~~~q~~vv~dl~d~f~ 79 (244)
T cd01479 5 VYVFLIDVSYNAIKSG----LLATACEALLSNLDNLPGDDPRTRVGFITFDST-LHFFNLKSSLEQPQMMVVSDLDDPFL 79 (244)
T ss_pred EEEEEEEccHHHHhhC----hHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCe-EEEEECCCCCCCCeEEEeeCcccccC
Confidence 5789999996553211 256778888888875433337799999999853 222
Q ss_pred ------EECCCCCHHHHHHhhcccc------cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChh------
Q 016296 62 ------LTTPTTDLGKILACMHELD------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK------ 123 (392)
Q Consensus 62 ------lvtlT~D~~kil~~L~~i~------~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~------ 123 (392)
++++......|...|+++. ......++.||++|..+|++ ..-||++|.+++-+..++
T Consensus 80 P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~-----~GGkIi~f~s~~pt~GpG~l~~~~ 154 (244)
T cd01479 80 PLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKE-----TGGKIIVFQSSLPTLGAGKLKSRE 154 (244)
T ss_pred CCCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCcCCcccccCc
Confidence 1122223344555555541 12368899999999999996 445799999886432111
Q ss_pred -------------------hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 124 -------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 124 -------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
--.+++.++.+++|.||+..++... -...-+..+++.|+|
T Consensus 155 ~~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~-~dla~l~~l~~~TGG 213 (244)
T cd01479 155 DPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQY-VDVATLGCLSRLTGG 213 (244)
T ss_pred cccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcc-cChhhhhhhhhhcCc
Confidence 1236899999999999999998876 567788999877753
No 55
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.26 E-value=3.8e-05 Score=73.23 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=105.0
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEE---------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlv--------------------- 63 (392)
+.+++||.|....+ ..-++..++++...+...= .++..+||||||.+. +.+.-
T Consensus 5 ~~vFvID~s~~ai~----~~~l~~~~~sl~~~l~~lp-~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f~ 78 (239)
T cd01468 5 VFVFVIDVSYEAIK----EGLLQALKESLLASLDLLP-GDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVFL 78 (239)
T ss_pred EEEEEEEcchHhcc----ccHHHHHHHHHHHHHHhCC-CCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCcC
Confidence 57899999986544 4447888888888887632 248899999999642 33321
Q ss_pred C--------CCCCHHHHHHhhccccc--------CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChh----
Q 016296 64 T--------PTTDLGKILACMHELDI--------GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRK---- 123 (392)
Q Consensus 64 t--------lT~D~~kil~~L~~i~~--------~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~---- 123 (392)
+ +......|...|+++.. .....++.||++|...|+++- ..-||++|++++-+..++
T Consensus 79 p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~ 155 (239)
T cd01468 79 PLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKS 155 (239)
T ss_pred CCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCcccc
Confidence 1 11111344455555422 235889999999999999851 467899999887752221
Q ss_pred ---------------------hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 124 ---------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 124 ---------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
--.++++++.+++|.||+..++... -....+..++..++
T Consensus 156 ~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~-~dl~~l~~l~~~TG 215 (239)
T cd01468 156 REDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDY-VDVATLKQLAKSTG 215 (239)
T ss_pred CcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccc-cCHHHhhhhhhcCC
Confidence 2357899999999999999999876 56778888887775
No 56
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.18 E-value=3.2e-05 Score=75.69 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=101.8
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEE---------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlv--------------------- 63 (392)
..++|||.|..- ..+++.++++...+.. ..+..+||||||... +.+.-
T Consensus 5 ~~vFviDvs~~~-------~el~~l~~sl~~~L~~---lP~~a~VGlITfd~~-V~~~~L~~~~~~~~~vf~g~~~~~~~ 73 (267)
T cd01478 5 VFLFVVDTCMDE-------EELDALKESLIMSLSL---LPPNALVGLITFGTM-VQVHELGFEECSKSYVFRGNKDYTAK 73 (267)
T ss_pred EEEEEEECccCH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCcCceeeeccCCccCCHH
Confidence 468999999742 2477888888777765 667789999999754 33311
Q ss_pred -------------------------------------CCCCCHHHHHHhhcccccC---------CcCcHHHHHHHHHHH
Q 016296 64 -------------------------------------TPTTDLGKILACMHELDIG---------GEMNIAAGIQVAQLA 97 (392)
Q Consensus 64 -------------------------------------tlT~D~~kil~~L~~i~~~---------G~~sL~~gL~vA~la 97 (392)
++......|...|+++... ....++.||++|..+
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~l 153 (267)
T cd01478 74 QIQDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGL 153 (267)
T ss_pred HHHHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHH
Confidence 1111223344455555331 368899999999999
Q ss_pred hcccCCCCCCcEEEEEEcCCCCCChhh------------------------------HHHHHHHHHhCCceEEEEEeCCC
Q 016296 98 LKHRQNKNQRQRIIVFAGSPVKYDRKV------------------------------MEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 98 Lkhr~~k~~~~RIVvFvgSp~~~d~~~------------------------------l~~~ak~LKknnI~VdiI~fG~e 147 (392)
|+.. .++..-||++|+++|-+..++. -.++++++.+++|.||+..++..
T Consensus 154 l~~~-~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d 232 (267)
T cd01478 154 LEAC-FPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLD 232 (267)
T ss_pred HHhh-cCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEecccc
Confidence 9864 3456789999999876422211 12478888999999999999987
Q ss_pred CCCcHHHHHHHHHHHc
Q 016296 148 DDGKPEKLEALLAAVN 163 (392)
Q Consensus 148 ~~~n~~~l~~~~~~vn 163 (392)
. --..-+..+++.+.
T Consensus 233 ~-vglaem~~l~~~TG 247 (267)
T cd01478 233 Q-VGLLEMKVLVNSTG 247 (267)
T ss_pred c-cCHHHHHHHHHhcC
Confidence 6 56778888887664
No 57
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.12 E-value=5e-05 Score=72.30 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=99.9
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEE----------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVL---------------------- 62 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vl---------------------- 62 (392)
+.++|||.|....+ ...++..++++...++..- .++..+||||||... +.+.
T Consensus 5 ~y~FvID~s~~av~----~g~~~~~~~sl~~~l~~l~-~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~ 78 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ----SGLLQSLIESLKSALDSLP-GDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFI 78 (243)
T ss_dssp EEEEEEE-SHHHHH----HTHHHHHHHHHHHHGCTSS-TSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHS
T ss_pred EEEEEEECchhhhh----ccHHHHHHHHHHHHHHhcc-CCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhccc
Confidence 56899999954322 3578889999999886543 569999999999753 3332
Q ss_pred -------ECCCCCHHHHHHhhcccc--------cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCCh-----
Q 016296 63 -------TTPTTDLGKILACMHELD--------IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDR----- 122 (392)
Q Consensus 63 -------vtlT~D~~kil~~L~~i~--------~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~----- 122 (392)
+++......|...|+++. ......++.||++|...|+.+. ..-||++|.+++-+..+
T Consensus 79 p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~ 155 (243)
T PF04811_consen 79 PLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLK 155 (243)
T ss_dssp STSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-
T ss_pred CCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceec
Confidence 233333455555555541 2346889999999999999532 56789999988754322
Q ss_pred ----------------------hhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 123 ----------------------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 123 ----------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
+--.++++++.+.+|.||+..++... -...-|..++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~-~~l~tl~~l~~~TG 217 (243)
T PF04811_consen 156 KREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDY-VDLATLGPLARYTG 217 (243)
T ss_dssp SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS---SHHHHTHHHHCTT
T ss_pred ccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCC-CCcHhHHHHHHhCc
Confidence 12468999999999999999999987 67888999987664
No 58
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=98.08 E-value=0.00024 Score=70.08 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=119.6
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCC--------C--------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTT--------D-------- 68 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~--------D-------- 68 (392)
-++|+||.+..-+..=-.+..|....+++-.|++.+.-.|..|+|.||+....+.+.|-|... +
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 468999999766544333478889999999999999999999999999998888777776544 0
Q ss_pred ---------HHHHHHhhccc----cc----CCcCcHHHHHHHHHHHhcccC------CCCCCcEEEE-EEcCCCCCC-hh
Q 016296 69 ---------LGKILACMHEL----DI----GGEMNIAAGIQVAQLALKHRQ------NKNQRQRIIV-FAGSPVKYD-RK 123 (392)
Q Consensus 69 ---------~~kil~~L~~i----~~----~G~~sL~~gL~vA~laLkhr~------~k~~~~RIVv-FvgSp~~~d-~~ 123 (392)
-..++..|+++ .. ...+.|..||.+|+-.+..+. +...+.||+| +.+|+.... =-
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 12223334332 11 112788899999876654331 1356779999 567654432 22
Q ss_pred hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhhh
Q 016296 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLI 185 (392)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l~ 185 (392)
.+-..+-.+.|.+|.||++.+|... ...|+..+..|+| -|+.++.... |...|+
T Consensus 163 ~~MN~iFaAqk~~v~IDv~~L~~~~---s~fLqQa~d~T~G----~y~~~~~~~~-l~q~L~ 216 (276)
T PF03850_consen 163 PLMNCIFAAQKQKVPIDVCKLGGKD---STFLQQASDITGG----IYLKVSKPEG-LLQYLL 216 (276)
T ss_pred HHHHHHHHHhcCCceeEEEEecCCc---hHHHHHHHHHhCc----eeeccCcccc-HHHHHH
Confidence 4557788899999999999999822 4699999988863 4445554333 444444
No 59
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=98.04 E-value=0.00011 Score=68.82 Aligned_cols=144 Identities=16% Similarity=0.240 Sum_probs=96.4
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCC----CcEEEEEecCCCceEEECCCCCHHHHHHh-hccc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPE----NTVGILTMGGKGVRVLTTPTTDLGKILAC-MHEL 79 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPe----s~VGLvtmag~~~~vlvtlT~D~~kil~~-L~~i 79 (392)
-|+++||+|.||+ =.|+++....+..+++.+. ++|. ..++||||+|. +.+.+++|. +.++ ...+
T Consensus 5 P~~lllDtSgSM~-----Ge~IealN~Glq~m~~~Lk-qdp~Ale~v~lsIVTF~~~-a~~~~pf~~----~~nF~~p~L 73 (207)
T COG4245 5 PCYLLLDTSGSMI-----GEPIEALNAGLQMMIDTLK-QDPYALERVELSIVTFGGP-ARVIQPFTD----AANFNPPIL 73 (207)
T ss_pred CEEEEEecCcccc-----cccHHHHHHHHHHHHHHHH-hChhhhheeEEEEEEecCc-ceEEechhh----HhhcCCCce
Confidence 4899999999997 4689999999999999875 6664 57899999985 688888764 2222 2235
Q ss_pred ccCCcCcHHHHHHHHHHHhcccC------CCCCCcEEEEEE--cCCCCCChhhHHHHHHHHHhC--CceEEEEEeCCCCC
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQ------NKNQRQRIIVFA--GSPVKYDRKVMEMIGKKLKKN--SVAIDIVNFGEDDD 149 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~------~k~~~~RIVvFv--gSp~~~d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~ 149 (392)
...|++.++.||+.|......|- .|..-+-.|+++ |.| + .+--..++....+. +.+|-.++||...
T Consensus 74 ~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~P-t--D~w~~~~~~~~~~~~~~k~v~a~~~G~~~- 149 (207)
T COG4245 74 TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEP-T--DDWQAGAALVFQGERRAKSVAAFSVGVQG- 149 (207)
T ss_pred ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCc-c--hHHHhHHHHhhhcccccceEEEEEecccc-
Confidence 67899999999999988775441 122333334333 333 2 22222333333333 3455566677765
Q ss_pred CcHHHHHHHHHHHc
Q 016296 150 GKPEKLEALLAAVN 163 (392)
Q Consensus 150 ~n~~~l~~~~~~vn 163 (392)
.+.+.|+++.+.|-
T Consensus 150 ad~~~L~qit~~V~ 163 (207)
T COG4245 150 ADNKTLNQITEKVR 163 (207)
T ss_pred cccHHHHHHHHhhc
Confidence 56789999887763
No 60
>PLN00162 transport protein sec23; Provisional
Probab=97.72 E-value=0.00042 Score=76.95 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=98.6
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEE---------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT--------------------- 63 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlv--------------------- 63 (392)
+.++|||.|-. -..++..++++...+.. .++...||||||+.. +.+.-
T Consensus 126 ~fvFvID~s~~-------~~~l~~lk~sl~~~L~~---LP~~a~VGlITF~s~-V~~~~L~~~~~~~~~Vf~g~k~~t~~ 194 (761)
T PLN00162 126 VFVFVVDTCMI-------EEELGALKSALLQAIAL---LPENALVGLITFGTH-VHVHELGFSECSKSYVFRGNKEVSKD 194 (761)
T ss_pred EEEEEEecchh-------HHHHHHHHHHHHHHHHh---CCCCCEEEEEEECCE-EEEEEcCCCCCcceEEecCCccCCHH
Confidence 67899999933 23477777777777764 567889999999854 22211
Q ss_pred -------------------------------------CCCCCHHHHHHhhccccc------CC---cCcHHHHHHHHHHH
Q 016296 64 -------------------------------------TPTTDLGKILACMHELDI------GG---EMNIAAGIQVAQLA 97 (392)
Q Consensus 64 -------------------------------------tlT~D~~kil~~L~~i~~------~G---~~sL~~gL~vA~la 97 (392)
++..-...|-+.|..|.. .+ .-.++.||++|...
T Consensus 195 ~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~l 274 (761)
T PLN00162 195 QILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGL 274 (761)
T ss_pred HHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHH
Confidence 000001122233333321 12 57799999999999
Q ss_pred hcccCCCCCCcEEEEEEcCCCCCChhh------------------------------HHHHHHHHHhCCceEEEEEeCCC
Q 016296 98 LKHRQNKNQRQRIIVFAGSPVKYDRKV------------------------------MEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 98 Lkhr~~k~~~~RIVvFvgSp~~~d~~~------------------------------l~~~ak~LKknnI~VdiI~fG~e 147 (392)
|+.. .++..-||++|+++|-+..++. -.++|+++.+++|.||+..++..
T Consensus 275 L~~~-~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~d 353 (761)
T PLN00162 275 LGAC-VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLD 353 (761)
T ss_pred Hhhc-cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEcccc
Confidence 9864 3467889999999985422211 13588999999999999999987
Q ss_pred CCCcHHHHHHHHHHHc
Q 016296 148 DDGKPEKLEALLAAVN 163 (392)
Q Consensus 148 ~~~n~~~l~~~~~~vn 163 (392)
. --..-++.+++.++
T Consensus 354 q-vglaem~~l~~~TG 368 (761)
T PLN00162 354 Q-VGVAEMKVAVERTG 368 (761)
T ss_pred c-cCHHHHhhhHhhcC
Confidence 6 55677888887764
No 61
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.64 E-value=0.0011 Score=62.85 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEEC-CC-CCHHHHHHhhcc--cc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT-PT-TDLGKILACMHE--LD 80 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvt-lT-~D~~kil~~L~~--i~ 80 (392)
-++||+|+|.||.. | + ..+-.|+.....+.+ .+.++.|.... ..++. +. .|....+..+.. ..
T Consensus 59 ~lvvl~DvSGSM~~--~--s------~~~l~~~~~l~~~~~--~~~~f~F~~~l-~~vT~~l~~~~~~~~l~~~~~~~~~ 125 (222)
T PF05762_consen 59 RLVVLCDVSGSMAG--Y--S------EFMLAFLYALQRQFR--RVRVFVFSTRL-TEVTPLLRRRDPEEALARLSALVQS 125 (222)
T ss_pred cEEEEEeCCCChHH--H--H------HHHHHHHHHHHHhCC--CEEEEEEeeeh-hhhhhhhccCCHHHHHHHHHhhccC
Confidence 47999999999963 2 2 223345555555555 89999998763 33333 32 366666666652 34
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
.+|+|++..+|..+...+... .-.+.-+||+.++.-+.+...+....++|+..+.+|..++
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~--~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLn 186 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARP--DLRRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLN 186 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcc--cccCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEEC
Confidence 789999999999988776421 2233334555455345577888899999999999776654
No 62
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.0019 Score=67.60 Aligned_cols=132 Identities=13% Similarity=0.133 Sum_probs=96.8
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEE-CCCCCHHHHHHhhcccccCCc
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT-TPTTDLGKILACMHELDIGGE 84 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlv-tlT~D~~kil~~L~~i~~~G~ 84 (392)
+++|||-|-||. =++.++++..+-.++..-...| -.+.++.|.....++-+ ++..+..+++.+|..+-.+|
T Consensus 275 villlD~SGSM~-----G~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GG- 346 (437)
T COG2425 275 VILLLDKSGSMS-----GFKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGG- 346 (437)
T ss_pred EEEEEeCCCCcC-----CcHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCC-
Confidence 789999999996 3566677765544444433332 25999999985444433 56779999999999998777
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHH-HHHHHHHhCCceEEEEEeCCCC
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVME-MIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~-~~ak~LKknnI~VdiI~fG~e~ 148 (392)
|+|..+|.-|...+|.+. .....||++.++.-.-. .++. +..+..|+.+.+|+.|.+|...
T Consensus 347 TD~~~~l~~al~~~k~~~--~~~adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~ 408 (437)
T COG2425 347 TDITKALRSALEDLKSRE--LFKADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYG 408 (437)
T ss_pred CChHHHHHHHHHHhhccc--ccCCCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCC
Confidence 999999999999999764 34466887777744334 4444 4455556899999999999865
No 63
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=97.24 E-value=0.0042 Score=61.25 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=105.0
Q ss_pred eEEEEEeCCc---cc---cCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEEC--------------
Q 016296 5 ATMICIDNSE---WM---RNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT-------------- 64 (392)
Q Consensus 5 a~~IvIDnSe---sM---rngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvt-------------- 64 (392)
-.+++||.+. .| ..++. + +-...+|+-.|+++++.+|-.|+|.||+-.....+-|.|
T Consensus 25 lL~vlId~~p~~Wg~~as~~~~~-t--i~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 25 LLVVLIDANPCSWGMLASAENWE-T--ISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred eEEEEEecCcchhhhhhhhcCce-e--HHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 4678899887 23 34444 3 445788999999999999999999999986555555555
Q ss_pred CC----CCH-------HHHHHhhccc----cc--CC-cCcHHHHHHHHHHHhcccCCC-----CCCcEEEEEEcCCCCC-
Q 016296 65 PT----TDL-------GKILACMHEL----DI--GG-EMNIAAGIQVAQLALKHRQNK-----NQRQRIIVFAGSPVKY- 120 (392)
Q Consensus 65 lT----~D~-------~kil~~L~~i----~~--~G-~~sL~~gL~vA~laLkhr~~k-----~~~~RIVvFvgSp~~~- 120 (392)
+| .++ ..|.+-|.++ .. .| .+-+.-++.-|+-. -||-++ .-+.||+||..++...
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~y-i~~~~ke~~~~~lkSRilV~t~t~d~~~ 180 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGY-INRLHKEEASEKLKSRILVFTLTRDRAL 180 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccch-HhhhhhhhhhhhhhceEEEEEechHHHh
Confidence 33 122 2223333332 11 11 23333333333222 222222 3488999999876543
Q ss_pred ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhhhc
Q 016296 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l~s 186 (392)
.-..+-..+-.+.|.||+||++++|.... .|++-++.|+ | -|++|+.-+.+| ..|+.
T Consensus 181 qyi~~MNciFaAqKq~I~Idv~~l~~~s~----~LqQa~D~TG---G-~YL~v~~~~gLL-qyLlt 237 (314)
T KOG2487|consen 181 QYIPYMNCIFAAQKQNIPIDVVSLGGDSG----FLQQACDITG---G-DYLHVEKPDGLL-QYLLT 237 (314)
T ss_pred hhhhHHHHHHHHHhcCceeEEEEecCCch----HHHHHHhhcC---C-eeEecCCcchHH-HHHHH
Confidence 22345567777889999999999998864 9999988775 3 455666433344 44444
No 64
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.20 E-value=0.023 Score=59.33 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=109.3
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCC----------------------------
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK---------------------------- 57 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~---------------------------- 57 (392)
+++++|.|.||.+ -++..+.....+..+.-.-....++|+=+|-+|
T Consensus 102 LYyLMDlS~SM~d------dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~f 175 (423)
T smart00187 102 LYYLMDLSYSMKD------DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPPY 175 (423)
T ss_pred eEEEEeCCccHHH------HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCCc
Confidence 6899999999974 577788888888888877888899999888876
Q ss_pred CceEEECCCCCHHHHHHhhcccccCCcCcH----HHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC--------------
Q 016296 58 GVRVLTTPTTDLGKILACMHELDIGGEMNI----AAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK-------------- 119 (392)
Q Consensus 58 ~~~vlvtlT~D~~kil~~L~~i~~~G~~sL----~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~-------------- 119 (392)
+.+-+.+||.|..++...+.+..++|+.+. ..||..|..-=++..-+...+|||||+....-
T Consensus 176 ~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv~P 255 (423)
T smart00187 176 GFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIVQP 255 (423)
T ss_pred ceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCcceeeEecC
Confidence 223358899999999999999988886552 23444433222333224466788888733211
Q ss_pred ------------------CChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCC
Q 016296 120 ------------------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGP 177 (392)
Q Consensus 120 ------------------~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~ 177 (392)
.|=-.+-.++++|+++||.+-+ ..-.. ...+++.|.+.+. +|.+.++..+.
T Consensus 256 NDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IF-AVT~~---~~~~Y~~Ls~lip---gs~vg~Ls~DS 324 (423)
T smart00187 256 NDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIF-AVTKK---QVSLYKELSALIP---GSSVGVLSEDS 324 (423)
T ss_pred CCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEE-EEccc---chhHHHHHHHhcC---cceeeecccCc
Confidence 0223688999999999996533 23222 2457788877663 56666665553
No 65
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=96.86 E-value=0.05 Score=52.56 Aligned_cols=156 Identities=17% Similarity=0.298 Sum_probs=102.7
Q ss_pred ceEEEEEeCCccccCCCCCCc-HHHHHHHHHHHHHHh------hhcCCCCCcEEEEEecCCC--c--eE-EECCCCCHHH
Q 016296 4 EATMICIDNSEWMRNGDYSPS-RLRAQADAVSLICGA------KTQSNPENTVGILTMGGKG--V--RV-LTTPTTDLGK 71 (392)
Q Consensus 4 Ea~~IvIDnSesMrngD~~Pt-Rl~aq~dav~~fv~~------k~~~NPes~VGLvtmag~~--~--~v-lvtlT~D~~k 71 (392)
.-+|+|||-+-.| |=|-|+ |=.-..-.++.|... +...+..+.+|||+|.... + -| ...+|.|+.+
T Consensus 14 ~~vVfvvEgTAal--gpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~ 91 (226)
T PF11265_consen 14 AQVVFVVEGTAAL--GPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQK 91 (226)
T ss_pred ceEEEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHH
Confidence 4478888877554 334333 222223333333321 1124577889999998652 1 22 3369999999
Q ss_pred HHHhhcccccCC-----cCcHHHHHHHHHHHhcc----cCC--CC-CCcEEEEEEcCCCC---------CChhhHHHHHH
Q 016296 72 ILACMHELDIGG-----EMNIAAGIQVAQLALKH----RQN--KN-QRQRIIVFAGSPVK---------YDRKVMEMIGK 130 (392)
Q Consensus 72 il~~L~~i~~~G-----~~sL~~gL~vA~laLkh----r~~--k~-~~~RIVvFvgSp~~---------~d~~~l~~~ak 130 (392)
++..|++|+..| .+++..||..|+..|.. |++ +. ..+..|++..||-. .......+++.
T Consensus 92 fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la~ 171 (226)
T PF11265_consen 92 FLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLAV 171 (226)
T ss_pred HHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHHH
Confidence 999999998755 24599999999998863 322 11 23445666666652 12346788999
Q ss_pred HHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC
Q 016296 131 KLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND 166 (392)
Q Consensus 131 ~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d 166 (392)
.+.++||.++||+= ....+|+.|.++.+++.
T Consensus 172 ~~~~~~I~LSiisP-----rklP~l~~Lfeka~~~~ 202 (226)
T PF11265_consen 172 LISERNISLSIISP-----RKLPSLRSLFEKAKGNP 202 (226)
T ss_pred HHHhcCceEEEEcC-----ccCHHHHHHHHhcCCCc
Confidence 99999999999985 23468999999887643
No 66
>PTZ00395 Sec24-related protein; Provisional
Probab=96.83 E-value=0.0075 Score=69.90 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=90.7
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC------------------------c-
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG------------------------V- 59 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~------------------------~- 59 (392)
+.++|||+|......-+. .+..+++...+... ..|..+||||||-... +
T Consensus 954 ~YvFLIDVS~~AVkSGLl----~tacesIK~sLDsL--~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQ 1027 (1560)
T PTZ00395 954 YFVFVVECSYNAIYNNIT----YTILEGIRYAVQNV--KCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQ 1027 (1560)
T ss_pred EEEEEEECCHHHHhhChH----HHHHHHHHHHHhcC--CCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCce
Confidence 789999999876544443 44555566655554 2578999999996421 1
Q ss_pred -----------------eEEECCCCCHHHHHHhhccc------ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcC
Q 016296 60 -----------------RVLTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGS 116 (392)
Q Consensus 60 -----------------~vlvtlT~D~~kil~~L~~i------~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgS 116 (392)
.+++.|...+..|...|.+| ....+..|+.||+.|..+|+++. ..-||++|.++
T Consensus 1028 MLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~G---GGGKIiVF~SS 1104 (1560)
T PTZ00395 1028 VIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERN---GLGSICMFYTT 1104 (1560)
T ss_pred EEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcC---CCceEEEEEcC
Confidence 23444444455555566655 22347889999999999999852 24568888876
Q ss_pred CCCCChh--------------------hHHHHHHHHHhCCceEEEEEeCCC
Q 016296 117 PVKYDRK--------------------VMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 117 p~~~d~~--------------------~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
.-+..++ --.+++..+.+.+|.||+.-|+..
T Consensus 1105 LPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsq 1155 (1560)
T PTZ00395 1105 TPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSN 1155 (1560)
T ss_pred CCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCc
Confidence 5432221 124689999999999999999864
No 67
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.60 E-value=0.032 Score=55.59 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=109.7
Q ss_pred cceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC--CCHHHHHHhhcc-c
Q 016296 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT--TDLGKILACMHE-L 79 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT--~D~~kil~~L~~-i 79 (392)
.....+++|.|.||.-.. .+....++.. ++. ..++...+.++++.+ ...++.+++ .+...+..++.. +
T Consensus 37 ~~~~~~~~~~~~s~~~~~-~~~~~~~~~~----~v~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (399)
T COG2304 37 PANLTLAIDTSGSMTGAL-LELAKSAAIE----LVN---GLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSL 107 (399)
T ss_pred CcceEEEeccCCCccchh-HHHHHHHHHH----Hhc---ccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhh
Confidence 456788999999998766 5544444433 333 477899999999999 679999988 899999999998 7
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC---ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLE 156 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~ 156 (392)
...|.+.+..++..+..-+.+-..+-...++.+..++.... |...+...+++..+.+|.++++|||... |.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~--n~~~~~ 185 (399)
T COG2304 108 QAGGATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDV--NEDELT 185 (399)
T ss_pred ccccccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEeccccc--chhhhh
Confidence 88999999999888876655422344555555555554433 6777888888888889999999999985 445555
Q ss_pred HHHHH
Q 016296 157 ALLAA 161 (392)
Q Consensus 157 ~~~~~ 161 (392)
.+...
T Consensus 186 ~~~~~ 190 (399)
T COG2304 186 GIAAA 190 (399)
T ss_pred hhhhc
Confidence 55443
No 68
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=96.27 E-value=0.21 Score=48.58 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=105.2
Q ss_pred EEEEEeCCcccc-CCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHH--------------
Q 016296 6 TMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLG-------------- 70 (392)
Q Consensus 6 ~~IvIDnSesMr-ngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~-------------- 70 (392)
++++||.-.-.+ --+-+=+|. .....+..|++++..-|-.|+|.||+--..+.+.|-|-+...-
T Consensus 23 L~viid~~p~~W~~~~ek~~~~-kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~y 101 (296)
T COG5242 23 LFVIIDLEPENWELTTEKGSRD-KVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMY 101 (296)
T ss_pred EEEEEecChhhcccccccccHH-HHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhh
Confidence 456677643222 112222333 3456788899999999999999999887666777766433211
Q ss_pred --------HHHHhhccc--ccC---CcCcHHHHHHHHHHHhcccCCC-CCCcEEEEEEcCCCCCChhh----HHHHHHHH
Q 016296 71 --------KILACMHEL--DIG---GEMNIAAGIQVAQLALKHRQNK-NQRQRIIVFAGSPVKYDRKV----MEMIGKKL 132 (392)
Q Consensus 71 --------kil~~L~~i--~~~---G~~sL~~gL~vA~laLkhr~~k-~~~~RIVvFvgSp~~~d~~~----l~~~ak~L 132 (392)
..++.+.++ .++ -...+.-|+..+.....||+++ ..+.||+||..|-- |... ..+-+-.+
T Consensus 102 rrfr~vde~~i~eiyrl~e~~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~--d~~~qYip~mnCiF~A 179 (296)
T COG5242 102 RRFRNVDETDITEIYRLIEHPHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGR--DRKDQYIPYMNCIFAA 179 (296)
T ss_pred hhhcccchHHHHHHHHHHhCcccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCc--hhhhhhchhhhheeeh
Confidence 123334333 122 2467777787777777888765 35689999987531 2211 12233445
Q ss_pred HhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhhhcC
Q 016296 133 KKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVLISS 187 (392)
Q Consensus 133 KknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l~ss 187 (392)
.|.||+|++++++... ..|+.-+++++| -|.+|..-.. |-..|+++
T Consensus 180 qk~~ipI~v~~i~g~s----~fl~Q~~daTgG----~Yl~ve~~eG-llqyL~~~ 225 (296)
T COG5242 180 QKFGIPISVFSIFGNS----KFLLQCCDATGG----DYLTVEDTEG-LLQYLLSL 225 (296)
T ss_pred hhcCCceEEEEecCcc----HHHHHHhhccCC----eeEeecCchh-HHHHHHHH
Confidence 7999999999998664 478887877753 4566655322 34555554
No 69
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.27 E-value=0.063 Score=56.29 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=90.0
Q ss_pred cceEEEEEeCCcccc-CCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccccc
Q 016296 3 LEATMICIDNSEWMR-NGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDI 81 (392)
Q Consensus 3 lEa~~IvIDnSesMr-ngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~ 81 (392)
+-||++.||+|-||. .|-|.|-.- ..-|+..+|.. +-|...|-+|+|+...-+|- .+.|..+.+
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQ--tALALhHLv~T---rfrGD~l~~i~Fgr~A~~v~----------v~eLt~l~~ 527 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQ--TALALHHLVCT---RFRGDALQIIAFGRYARTVT----------AAELTGLAG 527 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHH--HHHHHHHHHHh---cCCCcceEEEeccchhcccC----------HHHHhcCCC
Confidence 458999999999997 565555321 12244555554 55899999999998753331 123333432
Q ss_pred CC--cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC----------------CChhhHHHHH---HHHHhCCceEE
Q 016296 82 GG--EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK----------------YDRKVMEMIG---KKLKKNSVAID 140 (392)
Q Consensus 82 ~G--~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~----------------~d~~~l~~~a---k~LKknnI~Vd 140 (392)
-+ ++++.-||.+|...||.- ++.. +.||++.++.-+ .||..+.++. .++.+-|+.|.
T Consensus 528 v~eqgTNlhhaL~LA~r~l~Rh-~~~~-~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t 605 (652)
T COG4867 528 VYEQGTNLHHALALAGRHLRRH-AGAQ-PVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVT 605 (652)
T ss_pred ccccccchHHHHHHHHHHHHhC-cccC-ceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceee
Confidence 22 589999999999999842 3333 335555544322 1344555553 35578999999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHc
Q 016296 141 IVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 141 iI~fG~e~~~n~~~l~~~~~~vn 163 (392)
+.-+|... -|..|++.|.
T Consensus 606 ~FrLg~Dp-----gL~~Fv~qva 623 (652)
T COG4867 606 IFRLGSDP-----GLARFIDQVA 623 (652)
T ss_pred EEeecCCH-----hHHHHHHHHH
Confidence 99999876 5777777665
No 70
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.14 E-value=0.35 Score=47.48 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=97.1
Q ss_pred eEEEEEeCCccccCC------CC----CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCce--EEECCC------
Q 016296 5 ATMICIDNSEWMRNG------DY----SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR--VLTTPT------ 66 (392)
Q Consensus 5 a~~IvIDnSesMrng------D~----~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~--vlvtlT------ 66 (392)
.+++.||.+.|-.+. -| .||-++.+..++-.++..|-+ ...+-+..|+++-.. .+...-
T Consensus 33 nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~---D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 33 NLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDS---DKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCC---CCceeeEeecccCCCCCccccccCCCCCC
Confidence 578999999874322 12 478888888888888887654 457777778775321 111110
Q ss_pred ---CCHHHHHH----hhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceE
Q 016296 67 ---TDLGKILA----CMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAI 139 (392)
Q Consensus 67 ---~D~~kil~----~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~V 139 (392)
.-...++. +|.++++.|.++|.--|+.|...-+...... +--|++|+..-.-.|.....+++.++.+.-+.|
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~-~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQS-KYHILLIITDGEITDMNETIKAIVEASKYPLSI 188 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCC-ceEEEEEECCCCcccHHHHHHHHHHHhcCCeEE
Confidence 11244443 4567889999999988888876555432111 223455553323346778888888999999999
Q ss_pred EEEEeCCCCCCcHHHHHHH
Q 016296 140 DIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 140 diI~fG~e~~~n~~~l~~~ 158 (392)
-+||+|...+ ..|+.|
T Consensus 189 iiVGVGd~~F---~~M~~L 204 (254)
T cd01459 189 VIVGVGDGPF---DAMERL 204 (254)
T ss_pred EEEEeCCCCh---HHHHHh
Confidence 9999999876 566665
No 71
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=95.86 E-value=0.29 Score=46.79 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=100.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHH-H-----HHHHhhhcCCCCCcEE--EEEecCC-CceEEECCC--CCHHH--
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAV-S-----LICGAKTQSNPENTVG--ILTMGGK-GVRVLTTPT--TDLGK-- 71 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav-~-----~fv~~k~~~NPes~VG--Lvtmag~-~~~vlvtlT--~D~~k-- 71 (392)
+++|+||+|.||-...| .-|.+-. . .++.... ..|...|. ++-.+|. ...++++-| .+...
T Consensus 5 aLvLavDvS~SVD~~E~-----~lQ~~G~A~Al~dp~V~~Ai~-~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~ 78 (205)
T PF06707_consen 5 ALVLAVDVSGSVDADEY-----RLQREGYAAALRDPEVIAAIL-SGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAE 78 (205)
T ss_pred eeeeeeeccCCCCHHHH-----HHHHHHHHHHHCCHHHHHHHh-cCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHH
Confidence 68999999999875544 4444422 1 2333333 45655655 4555663 347777766 44444
Q ss_pred -HHHhhccc--ccCCcCcHHHHHHHHHHHhcccCCCC-CCcEEEEEEcCCCCCChh-hHH-HHHHHHHhCCceEEEEEeC
Q 016296 72 -ILACMHEL--DIGGEMNIAAGIQVAQLALKHRQNKN-QRQRIIVFAGSPVKYDRK-VME-MIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 72 -il~~L~~i--~~~G~~sL~~gL~vA~laLkhr~~k~-~~~RIVvFvgSp~~~d~~-~l~-~~ak~LKknnI~VdiI~fG 145 (392)
+-..|... ...+.|+++.||..|...|... +. ..+|+|=++ +....+.+ ... .+-..+-..||.|+-+.++
T Consensus 79 a~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~~--~~~~~RrVIDvS-GDG~~N~G~~p~~~ard~~~~~GitINgL~I~ 155 (205)
T PF06707_consen 79 AFAARLRAAPRRFGGRTAIGSALDFAAALLAQN--PFECWRRVIDVS-GDGPNNQGPRPVTSARDAAVAAGITINGLAIL 155 (205)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhC--CCCCceEEEEEC-CCCCCCCCCCccHHHHHHHHHCCeEEeeeEec
Confidence 44445544 2344599999999999999874 33 444455444 43443333 555 5566778899999999999
Q ss_pred CCCCCcHHHHHH-HHHHHcCCCCceEEEecCCChhhhhhh
Q 016296 146 EDDDGKPEKLEA-LLAAVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 146 ~e~~~n~~~l~~-~~~~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
........-|.. |-+.|=++.+++++++ .+..-+.+.+
T Consensus 156 ~~~~~~~~~L~~yy~~~VIgGpgAFV~~a-~~~~df~~Ai 194 (205)
T PF06707_consen 156 DDDPFGGADLDAYYRRCVIGGPGAFVETA-RGFEDFAEAI 194 (205)
T ss_pred CCCCCccccHHHHHhhhcccCCCceEEEc-CCHHHHHHHH
Confidence 877212223444 4444445555555444 4433355544
No 72
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.13 Score=57.78 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=104.2
Q ss_pred eEEEEEeCCccc-cCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC--------------------ceEEE
Q 016296 5 ATMICIDNSEWM-RNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG--------------------VRVLT 63 (392)
Q Consensus 5 a~~IvIDnSesM-rngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~--------------------~~vlv 63 (392)
+.|+.||+|-.- +|| -+.+..++++.++..+-..-|.-+||||+|-... -++.+
T Consensus 419 afvFmIDVSy~Ai~~G-----~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 419 AFVFMIDVSYNAISNG-----AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred eEEEEEEeehhhhhcc-----hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 568889998442 232 2346778888888887778888999999997531 01122
Q ss_pred CCC--------CCHHHHHHhhccc------ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-Ch------
Q 016296 64 TPT--------TDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DR------ 122 (392)
Q Consensus 64 tlT--------~D~~kil~~L~~i------~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d~------ 122 (392)
|+- .+..-|...|+.| +-.-++-|+.+|++|.+|||.. + .-+++||..+.-+. .+
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~--~--gGKl~vF~s~Lpt~g~g~kl~~r 569 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAA--D--GGKLFVFHSVLPTAGAGGKLSNR 569 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhcc--C--CceEEEEecccccccCccccccc
Confidence 221 2222222333333 1123789999999999999984 2 55688898765432 12
Q ss_pred -------------------hhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC--CceEEEecCCChhhh
Q 016296 123 -------------------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND--SSHLVHVPTGPNALS 181 (392)
Q Consensus 123 -------------------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d--~Sh~v~vp~g~~lLs 181 (392)
+...++||.+.+.+|.||+-.|-..- .-..-+-..+..|.|.- ..||.....++.++.
T Consensus 570 ~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ay-vDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~n 648 (1007)
T KOG1984|consen 570 DDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAY-VDVATLGVVPALTGGQVYKYYPFQALTDGPRLLN 648 (1007)
T ss_pred chhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccce-eeeeeecccccccCceeEEecchhhcccHHHHHH
Confidence 12458999999999999998884432 22233434443332211 123333334557788
Q ss_pred hhhhc
Q 016296 182 DVLIS 186 (392)
Q Consensus 182 D~l~s 186 (392)
|...+
T Consensus 649 DL~~~ 653 (1007)
T KOG1984|consen 649 DLVRN 653 (1007)
T ss_pred HHHHh
Confidence 87743
No 73
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=95.19 E-value=0.0054 Score=36.85 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHcccCC
Q 016296 324 DEDKELALALQMSMQD 339 (392)
Q Consensus 324 ~ee~~ia~A~~ms~~~ 339 (392)
+||++|++||+|||++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4566666666666653
No 74
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=95.05 E-value=0.43 Score=51.80 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=98.1
Q ss_pred CCcceEEEEEeCCccccCCCCC-CcHHHHHHHHHHHHHHhhhcCC-CCCcEEEEEecCC-------------CceEEEC-
Q 016296 1 MVLEATMICIDNSEWMRNGDYS-PSRLRAQADAVSLICGAKTQSN-PENTVGILTMGGK-------------GVRVLTT- 64 (392)
Q Consensus 1 m~lEa~~IvIDnSesMrngD~~-PtRl~aq~dav~~fv~~k~~~N-Pes~VGLvtmag~-------------~~~vlvt- 64 (392)
|+-|++++++|++.+|.+.+=. -+-|+.++.++..++..|+-.+ --.-||+|.+.-. +..|+-+
T Consensus 2 s~se~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~ 81 (669)
T KOG2326|consen 2 SSSESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPV 81 (669)
T ss_pred CCCcceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecc
Confidence 4568888888999999999911 2589999999999999987776 5557898887621 1245555
Q ss_pred CCCCHHHHHHhhcccccCC--cCcHHHHHHHHHH-HhcccC-CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEE
Q 016296 65 PTTDLGKILACMHELDIGG--EMNIAAGIQVAQL-ALKHRQ-NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAID 140 (392)
Q Consensus 65 lT~D~~kil~~L~~i~~~G--~~sL~~gL~vA~l-aLkhr~-~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~Vd 140 (392)
.|.+...++..+.+....+ ..+|..+|-+.+- ...|.. ++.-.+|+|+..-...+.-.++++ ++..|++.+|.+-
T Consensus 82 ~tpaf~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive~l~~~didL~ 160 (669)
T KOG2326|consen 82 TTPAFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVEDLTDEDIDLL 160 (669)
T ss_pred cchhhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHHHHhhcCccee
Confidence 3466666777776543322 3667777766654 233432 233445555554444555455566 9999999999999
Q ss_pred EEEeCC
Q 016296 141 IVNFGE 146 (392)
Q Consensus 141 iI~fG~ 146 (392)
++|+-.
T Consensus 161 ~~gldf 166 (669)
T KOG2326|consen 161 TEGLDF 166 (669)
T ss_pred EeeccC
Confidence 997754
No 75
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.71 E-value=0.0091 Score=35.89 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhcHHH
Q 016296 222 NIDPELALALRVSMEE 237 (392)
Q Consensus 222 ~~DPELa~Alr~SlEE 237 (392)
++|++|+.||++||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 3589999999999997
No 76
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.56 E-value=0.024 Score=37.11 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q 016296 222 NIDPELALALRVSMEEERAR 241 (392)
Q Consensus 222 ~~DPELa~Alr~SlEEe~~r 241 (392)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999998765
No 77
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=93.88 E-value=1.2 Score=46.12 Aligned_cols=132 Identities=16% Similarity=0.240 Sum_probs=87.3
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc---cc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL---DI 81 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i---~~ 81 (392)
.++|++|.|.+|.-|+-..++|+.+..++-.+.-.-..+ .++||+.++++.. ...+++......+...|..+ .+
T Consensus 226 ~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~--gd~vg~~~~~~~~-~~~~~p~~G~~~l~~~l~~l~~~~~ 302 (416)
T COG1721 226 TVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKN--GDRVGLLIFGGGG-PKWIPPSRGRRHLARILKALALLRP 302 (416)
T ss_pred eEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhC--CCeeEEEEECCCc-ceeeCCCcchHHHHHHHHHhhccCC
Confidence 589999999999999999999999999888888876655 5689999998764 67888887777666655554 45
Q ss_pred CCc-CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC-CChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 82 GGE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK-YDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 82 ~G~-~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~-~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
.+. ++....... ..+.. ..+..|+++..... .....+..+...+.+. +.+-++.|.+.
T Consensus 303 ~~~~~~~~~~~~~--~~~l~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 362 (416)
T COG1721 303 APEETDYIRRVSK--LDFLP-----PRRPLVILITDLARHGVDELLLEVLDPLGER-PLVLIVDLRDP 362 (416)
T ss_pred CCcchhHHHHhhh--hhccC-----cccceEEEeehhhccccchhhhccccccCCC-ceEEEEEecCC
Confidence 444 333333222 22211 22223444433333 2334456666666666 77788888653
No 78
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=1.2 Score=49.17 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=92.9
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEE----------------CCC---
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLT----------------TPT--- 66 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlv----------------tlT--- 66 (392)
.++|||.= ..+.+|+..|+++..++.- ..|..-||||+++.. +.|.- .+|
T Consensus 124 f~fVvDtc-------~~eeeL~~LkssL~~~l~l---LP~~alvGlItfg~~-v~v~el~~~~~sk~~VF~G~ke~s~~q 192 (745)
T KOG1986|consen 124 FVFVVDTC-------MDEEELQALKSSLKQSLSL---LPENALVGLITFGTM-VQVHELGFEECSKSYVFSGNKEYSAKQ 192 (745)
T ss_pred EEEEEeec-------cChHHHHHHHHHHHHHHhh---CCCcceEEEEEecce-EEEEEcCCCcccceeEEeccccccHHH
Confidence 35666653 2468999999999888875 677778999999743 23311 011
Q ss_pred --------C----------CHHHHH-----------Hhhccccc------CC---cCcHHHHHHHHHHHhcccCCCCCCc
Q 016296 67 --------T----------DLGKIL-----------ACMHELDI------GG---EMNIAAGIQVAQLALKHRQNKNQRQ 108 (392)
Q Consensus 67 --------~----------D~~kil-----------~~L~~i~~------~G---~~sL~~gL~vA~laLkhr~~k~~~~ 108 (392)
. ...++| .-|..+++ .| --..+.||.+|...|... -++...
T Consensus 193 ~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~ 271 (745)
T KOG1986|consen 193 LLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGA 271 (745)
T ss_pred HHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcc
Confidence 1 001111 11112222 22 135678888888877654 578999
Q ss_pred EEEEEEcCCCCCChh------------------------------hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 109 RIIVFAGSPVKYDRK------------------------------VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 109 RIVvFvgSp~~~d~~------------------------------~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
|||+|+|+|.+..++ --.++|+++.++|..|||..=+-.. --...++.+
T Consensus 272 rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQ-vGi~EMk~l 350 (745)
T KOG1986|consen 272 RIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQ-VGILEMKPL 350 (745)
T ss_pred eEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccc-cchHHHHHH
Confidence 999999998653222 1257899999999999998877655 445666777
Q ss_pred HHHH
Q 016296 159 LAAV 162 (392)
Q Consensus 159 ~~~v 162 (392)
++.+
T Consensus 351 ~~~T 354 (745)
T KOG1986|consen 351 VEST 354 (745)
T ss_pred hhcC
Confidence 7555
No 79
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=93.32 E-value=1.6 Score=45.99 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=97.0
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCC----------------------------
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGK---------------------------- 57 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~---------------------------- 57 (392)
+++.+|.|.||++ -|+-.+.....+....-+.-...++|+=+|.+|
T Consensus 105 LYyLmDlS~Sm~d------dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~~ 178 (426)
T PF00362_consen 105 LYYLMDLSYSMKD------DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPPF 178 (426)
T ss_dssp EEEEEE-SGGGHH------HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B---
T ss_pred EEEEeechhhhhh------hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCCe
Confidence 6899999999974 233344444445555555556789999999876
Q ss_pred CceEEECCCCCHHHHHHhhcccccCCcCcH----HHHHHHHHHHhcccCCCCCCcEEEEEEcCCC---------------
Q 016296 58 GVRVLTTPTTDLGKILACMHELDIGGEMNI----AAGIQVAQLALKHRQNKNQRQRIIVFAGSPV--------------- 118 (392)
Q Consensus 58 ~~~vlvtlT~D~~kil~~L~~i~~~G~~sL----~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~--------------- 118 (392)
+.+-..+||.|..++...+++..+.|+.+. ..||..|..-=++..=+....|||||+....
T Consensus 179 ~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~~p 258 (426)
T PF00362_consen 179 SFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIVKP 258 (426)
T ss_dssp SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTGGGGGT--S-
T ss_pred eeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccccccceeeec
Confidence 334567888999999999999888774332 2334333332233222346777888863211
Q ss_pred ---CC--------------ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhh
Q 016296 119 ---KY--------------DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALS 181 (392)
Q Consensus 119 ---~~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLs 181 (392)
.+ |=-.+-.+.++|.++||.+-. ..-.. -...++.|.+.+ .++.+..+-.+...+-
T Consensus 259 nd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~IF-AVt~~---~~~~Y~~L~~~i---~~s~vg~L~~dSsNIv 331 (426)
T PF00362_consen 259 NDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPIF-AVTKD---VYSIYEELSNLI---PGSSVGELSSDSSNIV 331 (426)
T ss_dssp --SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEEE-EEEGG---GHHHHHHHHHHS---TTEEEEEESTTSHTHH
T ss_pred CCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEEE-EEchh---hhhHHHHHhhcC---CCceecccccCchhHH
Confidence 01 122467899999999995533 33322 356889998888 4677877777653343
Q ss_pred h
Q 016296 182 D 182 (392)
Q Consensus 182 D 182 (392)
+
T Consensus 332 ~ 332 (426)
T PF00362_consen 332 Q 332 (426)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=92.39 E-value=2.5 Score=38.19 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=78.0
Q ss_pred CCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCc---eE--EECCCCC--------HHHHH----HhhcccccCCc
Q 016296 22 SPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV---RV--LTTPTTD--------LGKIL----ACMHELDIGGE 84 (392)
Q Consensus 22 ~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~---~v--lvtlT~D--------~~kil----~~L~~i~~~G~ 84 (392)
.||.++.+..++-.++..|-..+ .+-+..|+++.+ .+ .-+++.+ ...++ .++.++++.|.
T Consensus 9 ~~N~Y~~ai~~vg~il~~Yd~dk---~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GP 85 (146)
T PF07002_consen 9 QPNPYQQAIRAVGEILQDYDSDK---MIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGP 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHhhccCC---ccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCC
Confidence 68999999999999999986544 455555776533 11 1345543 34444 55667899999
Q ss_pred CcHHHHHHHHHHHhcc-cCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeC
Q 016296 85 MNIAAGIQVAQLALKH-RQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 85 ~sL~~gL~vA~laLkh-r~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (392)
++|.--|+.|...-+. .+++.+=...+|+.++.++ |.+.-.+++-.+.+.-+.|-+||+|
T Consensus 86 T~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~-D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 86 TNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQIT-DMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred ccHHHHHHHHHHHHhhhccCCceEEEEEEecccccc-cHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999888887766552 2222222334445555544 5666666666777788888888877
No 81
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.31 E-value=1.1 Score=52.13 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=99.8
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEEC---------CCCCHHHHHHh
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT---------PTTDLGKILAC 75 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvt---------lT~D~~kil~~ 75 (392)
.++|++|.|.||. +-||..++-.++.++..+ -+..-|-|+++.... .-++| =..+...++..
T Consensus 227 diviLlD~SgSm~-----g~~~~lak~tv~~iLdtL---s~~Dfvni~tf~~~~-~~v~pc~~~~lvqAt~~nk~~~~~~ 297 (1104)
T KOG2353|consen 227 DIVILLDVSGSMS-----GLRLDLAKQTVNEILDTL---SDNDFVNILTFNSEV-NPVSPCFNGTLVQATMRNKKVFKEA 297 (1104)
T ss_pred ceEEEEecccccc-----chhhHHHHHHHHHHHHhc---ccCCeEEEEeecccc-CcccccccCceeecchHHHHHHHHH
Confidence 5899999999884 789999999999999974 345677788887653 33332 22677888899
Q ss_pred hcccccCCcCcHHHHHHHHHHHhcccC-------CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 76 MHELDIGGEMNIAAGIQVAQLALKHRQ-------NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 76 L~~i~~~G~~sL~~gL~vA~laLkhr~-------~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+..+++.|.+++..|+..|...|..-. ++...+-|++|..+. .++...+++.-..= ...|||.+..+|.+.
T Consensus 298 i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~-~~~~~~If~~yn~~-~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 298 IETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGV-DENAKEIFEKYNWP-DKKVRVFTFLIGDEV 375 (1104)
T ss_pred HhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCC-cccHHHHHHhhccC-CCceEEEEEEecccc
Confidence 999999999999999999988875321 122445567666442 23344444332111 678999999999998
Q ss_pred CCcHHHHHH
Q 016296 149 DGKPEKLEA 157 (392)
Q Consensus 149 ~~n~~~l~~ 157 (392)
.+...++-
T Consensus 376 -~~~~~~~w 383 (1104)
T KOG2353|consen 376 -YDLDEIQW 383 (1104)
T ss_pred -cccccchh
Confidence 56555443
No 82
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=92.18 E-value=0.061 Score=35.19 Aligned_cols=19 Identities=47% Similarity=0.821 Sum_probs=13.7
Q ss_pred ChHHHHHHHHHcccCCCCC
Q 016296 324 DEDKELALALQMSMQDDTK 342 (392)
Q Consensus 324 ~ee~~ia~A~~ms~~~~~~ 342 (392)
+||++|++||+||+++.+.
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~ 19 (26)
T smart00726 1 DEDEDLQLALELSLQEAEE 19 (26)
T ss_pred ChHHHHHHHHHHhHHHhhh
Confidence 3677888888888876544
No 83
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=90.10 E-value=9.6 Score=36.94 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=73.5
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCc-EEEEEecCCCce---EEEC--CCCCHHHHHHhhcc
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENT-VGILTMGGKGVR---VLTT--PTTDLGKILACMHE 78 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~-VGLvtmag~~~~---vlvt--lT~D~~kil~~L~~ 78 (392)
++-|+||+|-||+. .| ...+..++-.|.+.+-..+--.. +|.-|.+-++-. -+.. -+..++.+..-+|-
T Consensus 14 ~VtlLID~SGSMrg---r~--~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~ 88 (219)
T PF11775_consen 14 VVTLLIDCSGSMRG---RP--IEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHI 88 (219)
T ss_pred EEEEEEeCCcCCCC---Ch--HHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHH
Confidence 57799999999997 23 33334444445554444433333 366665322111 0110 12345555544443
Q ss_pred cc---------------------cCC-cCcHHHHHHHHHHHhcccCCCCCCcEEEEEE-cCCCC-----CC-----hhhH
Q 016296 79 LD---------------------IGG-EMNIAAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVK-----YD-----RKVM 125 (392)
Q Consensus 79 i~---------------------~~G-~~sL~~gL~vA~laLkhr~~k~~~~RIVvFv-gSp~~-----~d-----~~~l 125 (392)
+. +.. +.+ +.||..|..-|..|+ ..++-+|||+ |.|.. .. ..+|
T Consensus 89 vyk~a~~~wrraR~~l~~m~~~~~~~eniD-GeAl~~a~~rL~~r~--e~rkiLiViSDG~P~d~st~~~n~~~~L~~HL 165 (219)
T PF11775_consen 89 VYKDADTPWRRARRNLGLMMREGLLKENID-GEALRWAAERLLARP--EQRKILIVISDGAPADDSTLSANDGDYLDAHL 165 (219)
T ss_pred HHHhcCChhhhHHHhHHHHhhccccccCCc-HHHHHHHHHHHHcCC--ccceEEEEEeCCCcCcccccccCChHHHHHHH
Confidence 31 111 222 568888888887763 3444445555 66662 11 2456
Q ss_pred HHHHHHHHh-CCceEEEEEeCCCC
Q 016296 126 EMIGKKLKK-NSVAIDIVNFGEDD 148 (392)
Q Consensus 126 ~~~ak~LKk-nnI~VdiI~fG~e~ 148 (392)
..+++...+ .+|.+--||+|...
T Consensus 166 r~vi~~ie~~~~Vel~aiGIg~D~ 189 (219)
T PF11775_consen 166 RQVIAEIETRSDVELIAIGIGHDV 189 (219)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCc
Confidence 777777765 47888888888765
No 84
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=89.69 E-value=5.1 Score=45.08 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=90.3
Q ss_pred eEEEEEeCCcc-ccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCH--------------
Q 016296 5 ATMICIDNSEW-MRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL-------------- 69 (392)
Q Consensus 5 a~~IvIDnSes-MrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~-------------- 69 (392)
..|+.||+|-. +.+|= +.+..+++..-+..+-+-.|..+|++|.+-.+. ..+ -+..|.
T Consensus 278 ~yvFlIDVS~~a~~~g~-----~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl-~ff-k~s~d~~~~~~~vsdld~pF 350 (861)
T COG5028 278 VYVFLIDVSFEAIKNGL-----VKAAIRAILENLDQIPNFDPRTKIAIICFDSSL-HFF-KLSPDLDEQMLIVSDLDEPF 350 (861)
T ss_pred EEEEEEEeehHhhhcch-----HHHHHHHHHhhccCCCCCCCcceEEEEEEccee-eEE-ecCCCCccceeeeccccccc
Confidence 56889999953 44442 235555666655555566799999999997653 222 222222
Q ss_pred -----HHH--------------HHhhcccc---cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC--------
Q 016296 70 -----GKI--------------LACMHELD---IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK-------- 119 (392)
Q Consensus 70 -----~ki--------------l~~L~~i~---~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~-------- 119 (392)
+.+ +.....+- -.-+..++.||++|++.++. .+-+||+|+++.-+
T Consensus 351 lPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----~GGkii~~~stlPn~G~Gkl~~ 425 (861)
T COG5028 351 LPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----TGGKIIVFLSTLPNMGIGKLQL 425 (861)
T ss_pred ccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----cCceEEEEeecCCCcccccccc
Confidence 011 11111121 12367899999999998865 45558888866221
Q ss_pred ----------CChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 120 ----------YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 120 ----------~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
+..+--.+++..+-|-+|.||+-.+.+.- --..-+-.+++.+.
T Consensus 426 r~d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~y-idvaTls~l~~~T~ 478 (861)
T COG5028 426 REDKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDY-IDVATLSHLCRYTG 478 (861)
T ss_pred cccchhhhccccchHHHHHHHHHHHhcceEEEEeccccc-cchhhhcchhhccC
Confidence 12222357899999999999999997754 34456666665553
No 85
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.99 E-value=9.9 Score=41.76 Aligned_cols=59 Identities=19% Similarity=0.363 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcccCCCCCCcEEEEEE-cCCCCC-C---------hhhHHHHHHHHHhC-CceEEEEEeCCCC
Q 016296 88 AAGIQVAQLALKHRQNKNQRQRIIVFA-GSPVKY-D---------RKVMEMIGKKLKKN-SVAIDIVNFGEDD 148 (392)
Q Consensus 88 ~~gL~vA~laLkhr~~k~~~~RIVvFv-gSp~~~-d---------~~~l~~~ak~LKkn-nI~VdiI~fG~e~ 148 (392)
+.||..|+.-|..|+ ..+|-+|||+ |.|... + +.+|..+++...+. +|.+--||+|..+
T Consensus 499 GeAl~wa~~rL~~R~--e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~Dv 569 (600)
T TIGR01651 499 GEALMWAHQRLIARP--EQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDV 569 (600)
T ss_pred hHHHHHHHHHHhcCc--ccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccccH
Confidence 678999999998874 3455455555 666632 1 23577778888775 8999999998775
No 86
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=88.14 E-value=12 Score=40.65 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=87.1
Q ss_pred cceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccC
Q 016296 3 LEATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIG 82 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~ 82 (392)
++.++.|.|+|.||--. -....-++..+|.+.. .|--.=.+|||... |++..=-..+...-+..+.+..-+
T Consensus 340 l~n~iav~DvSGSM~~~------pm~vaiaLgll~ae~~--~~pf~~~~ITFs~~-P~~~~i~g~~l~ekv~~~~~~~wg 410 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------PMDVAIALGLLIAELN--KGPFKGRFITFSEN-PQLHKIKGDTLREKVRFIRRMDWG 410 (534)
T ss_pred ccceEEEEecCCccCcc------HHHHHHHHHHHHHHhc--ccccCCeEEeecCC-ceEEEecCCCHHHHHHHHHhCCcc
Confidence 68999999999999876 3344456777777763 33445578999976 554432223677777788888889
Q ss_pred CcCcHHHHHHHHHHH-hccc-CCCCCCcEEEEEEcCCCCC-----C---hhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 83 GEMNIAAGIQVAQLA-LKHR-QNKNQRQRIIVFAGSPVKY-----D---RKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 83 G~~sL~~gL~vA~la-Lkhr-~~k~~~~RIVvFvgSp~~~-----d---~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
++|+|+....+-+.. .++. +...-.+|++||++=.... + .-+-..+-++.++.|-.+=-|-|..
T Consensus 411 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~iVFWN 484 (534)
T PF11443_consen 411 MNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEIVFWN 484 (534)
T ss_pred cCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCceEEee
Confidence 999999998766543 4432 1123457888887433221 1 2334455666677776665555554
No 87
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=83.76 E-value=28 Score=37.90 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=89.3
Q ss_pred EEEEEeCCccccCC---------C-CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCce---EEE--CCCCC--
Q 016296 6 TMICIDNSEWMRNG---------D-YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVR---VLT--TPTTD-- 68 (392)
Q Consensus 6 ~~IvIDnSesMrng---------D-~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~---vlv--tlT~D-- 68 (392)
.+|.||.+-|--+. | ..||=++.+..+|-.+++.|...+ ++.-..|+.+.+- +-- .+..+
T Consensus 288 f~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk---~fpa~GFGakip~~~~vs~~f~ln~~~~ 364 (529)
T KOG1327|consen 288 FTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDK---LFPAFGFGAKIPPDGQVSHEFVLNFNPE 364 (529)
T ss_pred eEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCC---ccccccccccCCCCcccccceeecCCCC
Confidence 57888887752221 2 679999999999999999876444 4444445554221 100 11111
Q ss_pred ------HHHHH----HhhcccccCCcCcHHHHHHHH----HHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHh
Q 016296 69 ------LGKIL----ACMHELDIGGEMNIAAGIQVA----QLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKK 134 (392)
Q Consensus 69 ------~~kil----~~L~~i~~~G~~sL~~gL~vA----~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKk 134 (392)
..-++ .+|-.+++.|.|+|.--|..| +....+ ..+=...+|+.++-++ |.+.-.+++=.+-+
T Consensus 365 ~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~---~~qY~VLlIitDG~vT-dm~~T~~AIV~AS~ 440 (529)
T KOG1327|consen 365 DPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT---AGQYHVLLIITDGVVT-DMKETRDAIVSASD 440 (529)
T ss_pred CCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC---CcceEEEEEEeCCccc-cHHHHHHHHHhhcc
Confidence 23333 455667899999987666544 444321 1112223344455444 57777777778889
Q ss_pred CCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 135 NSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 135 nnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
.=..|-|||+|...+ +.++.|.
T Consensus 441 lPlSIIiVGVGd~df---~~M~~lD 462 (529)
T KOG1327|consen 441 LPLSIIIVGVGDADF---DMMRELD 462 (529)
T ss_pred CCeEEEEEEeCCCCH---HHHHHhh
Confidence 999999999998886 6777775
No 88
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=82.67 E-value=5.4 Score=34.77 Aligned_cols=92 Identities=14% Similarity=0.219 Sum_probs=51.4
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc--ccCC
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL--DIGG 83 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i--~~~G 83 (392)
++|+||.|-||.+.++. ||. ..+..+++.+ ..+|-||.+- ..+.-...+.. ....+..+ .-+|
T Consensus 1 i~vaiDtSGSis~~~l~--~fl---~ev~~i~~~~-----~~~v~vi~~D-~~v~~~~~~~~----~~~~~~~~~~~GgG 65 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELR--RFL---SEVAGILRRF-----PAEVHVIQFD-AEVQDVQVFRS----LEDELRDIKLKGGG 65 (126)
T ss_pred CEEEEECCCCCCHHHHH--HHH---HHHHHHHHhC-----CCCEEEEEEC-CEeeeeeEEec----ccccccccccCCCC
Confidence 57999999999765543 333 3333444443 3357777654 32333333333 12223333 4467
Q ss_pred cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCC
Q 016296 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPV 118 (392)
Q Consensus 84 ~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~ 118 (392)
+|+|.-+++-+. +++ ....-+|+|.++-.
T Consensus 66 GTdf~pvf~~~~---~~~---~~~~~vi~fTDg~~ 94 (126)
T PF09967_consen 66 GTDFRPVFEYLE---ENR---PRPSVVIYFTDGEG 94 (126)
T ss_pred CCcchHHHHHHH---hcC---CCCCEEEEEeCCCC
Confidence 899999888864 332 23344667776544
No 89
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=82.07 E-value=46 Score=31.73 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=44.5
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSD 182 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD 182 (392)
....+|+|+|..... ....+.+++++|++ .++.+.+||-|.....-.+.++..++..+. ..++..+.. ...+.+
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~--~~~v~~~g~-~~~~~~ 259 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGL--QDRVTFVGH-CSDMPA 259 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCC--cceEEEcCC-cccHHH
Confidence 344577777774433 56678899999988 567777777776541111223334433321 123333333 223556
Q ss_pred hhhcCCcc
Q 016296 183 VLISSPVF 190 (392)
Q Consensus 183 ~l~sspi~ 190 (392)
.+..+.++
T Consensus 260 ~l~~ad~~ 267 (355)
T cd03819 260 AYALADIV 267 (355)
T ss_pred HHHhCCEE
Confidence 66655543
No 90
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=81.36 E-value=8 Score=35.17 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 89 ~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.|..+|...+++.. .....+|+||+|+- .+.++-+.+|+.|+..|+.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 35666776655542 34667788777773 35788999999999999999998887754
No 91
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=81.27 E-value=18 Score=40.63 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=87.5
Q ss_pred EEEEEeCCccccC------------------CCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC-
Q 016296 6 TMICIDNSEWMRN------------------GDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT- 66 (392)
Q Consensus 6 ~~IvIDnSesMrn------------------gD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT- 66 (392)
||||||-|.||.. .=+..|=|.|+.+|+-++|+=.++--|....=-++.++..+..+-+-+
T Consensus 8 TVfVLDh~p~f~~ss~~~i~~d~~~~~~~~~~~i~KSLWTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~~ 87 (695)
T PF10221_consen 8 TVFVLDHSPYFAESSNQPIDFDIVKKSRQQKAPISKSLWTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWST 87 (695)
T ss_pred EEEEEcCCchhhhhccCcEEEeeecCCCCCcCcccchHHHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcCh
Confidence 7999999998832 123357899999999999999999999988855666777777777644
Q ss_pred --CCHHHHHHhhcccccC-------CcCcHHHHHHHHHHHhcccC----------------CCCCCcEEEEEEcCCCCCC
Q 016296 67 --TDLGKILACMHELDIG-------GEMNIAAGIQVAQLALKHRQ----------------NKNQRQRIIVFAGSPVKYD 121 (392)
Q Consensus 67 --~D~~kil~~L~~i~~~-------G~~sL~~gL~vA~laLkhr~----------------~k~~~~RIVvFvgSp~~~d 121 (392)
.+...++..|..+.+- ...++..||.+|..+|-+.. ....+.|||+|..-....+
T Consensus 88 ~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~d~~ 167 (695)
T PF10221_consen 88 SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKSDES 167 (695)
T ss_pred hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecCcHH
Confidence 5677778888877432 34589999999999886421 0125678999976654444
Q ss_pred hhhHH
Q 016296 122 RKVME 126 (392)
Q Consensus 122 ~~~l~ 126 (392)
-..|.
T Consensus 168 m~~Le 172 (695)
T PF10221_consen 168 MRSLE 172 (695)
T ss_pred HHHHH
Confidence 44443
No 92
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.62 E-value=6.8 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|.....+++-+.++.+.|+++||+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788887788889999999999999999999876
No 93
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=76.80 E-value=54 Score=30.34 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 82 GGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 82 ~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
.|.+++.-+|..-.++... +-- .+++++| .++..-++.+|+..|++|.+||+..-. . ..|.++
T Consensus 86 kG~~Dv~laIDame~~~~~-----~iD-~~vLvSg-----D~DF~~Lv~~lre~G~~V~v~g~~~~t---s---~~L~~a 148 (160)
T TIGR00288 86 AGDVDVRMAVEAMELIYNP-----NID-AVALVTR-----DADFLPVINKAKENGKETIVIGAEPGF---S---TALQNS 148 (160)
T ss_pred cCcccHHHHHHHHHHhccC-----CCC-EEEEEec-----cHhHHHHHHHHHHCCCEEEEEeCCCCC---h---HHHHHh
Confidence 4555655555543333211 222 3455555 356788999999999988777753222 2 345444
Q ss_pred HcCCCCceEEEecCC
Q 016296 162 VNNNDSSHLVHVPTG 176 (392)
Q Consensus 162 vn~~d~Sh~v~vp~g 176 (392)
. ++|+.+.+.
T Consensus 149 c-----d~FI~L~~~ 158 (160)
T TIGR00288 149 A-----DIAIILGEE 158 (160)
T ss_pred c-----CeEEeCCCC
Confidence 3 367766543
No 94
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=75.62 E-value=35 Score=31.34 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
..+.+|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+++..+.
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~ 244 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR----EELEALAKELGL 244 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH----HHHHHHHHhcCC
Confidence 445678888875533 455688888998886 6777776655433 466677766653
No 95
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=21 Score=34.20 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 89 ~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.|..+|+..++..+... ..|++|| +++.+ +.+|=+-+|+.|+..+..|.|+-.|.......+-..+..+..
T Consensus 32 AG~aVa~~i~~~~~~~~-~~~v~vl-cG~Gn-NGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l 102 (203)
T COG0062 32 AGLAVARAILREYPLGR-ARRVLVL-CGPGN-NGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSL 102 (203)
T ss_pred HHHHHHHHHHHHcCccc-CCEEEEE-ECCCC-ccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhh
Confidence 46667777776654322 4455555 55444 478889999999999999999999976633334444443333
No 96
>KOG2327 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku70 autoantigen) [Replication, recombination and repair]
Probab=73.41 E-value=42 Score=36.96 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=91.1
Q ss_pred cceEEEEEeCCccccCCC---CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCc------eEEEC----CCCCH
Q 016296 3 LEATMICIDNSEWMRNGD---YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV------RVLTT----PTTDL 69 (392)
Q Consensus 3 lEa~~IvIDnSesMrngD---~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~------~vlvt----lT~D~ 69 (392)
.|++.+|||.|.+|+.++ +.++-|.....++..++-.+.-.||...+|++..+...- ..+.+ ++.-.
T Consensus 18 ~~~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~~ 97 (602)
T KOG2327|consen 18 KEAILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEEV 97 (602)
T ss_pred ccceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHHH
Confidence 589999999999999876 458899999999999999988899999999987763211 22222 33334
Q ss_pred HHHHHhhcc------cccCC----cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC--ChhhHHHHHHHHHhCCc
Q 016296 70 GKILACMHE------LDIGG----EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSV 137 (392)
Q Consensus 70 ~kil~~L~~------i~~~G----~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI 137 (392)
.+|+.-... +...| ...|.+-|......+-..+.+...+||.+|..-+... +..+.....+++|...-
T Consensus 98 ~k~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P~~~~~~~~~a~l~r~k~~~~ 177 (602)
T KOG2327|consen 98 KKILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNPHERDDFLESAHLQRAKDLVT 177 (602)
T ss_pred HHHHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCcccccchHHHhhhhhhhhccc
Confidence 444433322 11122 2367777777765443344567888999998665543 33333334444444333
Q ss_pred eEEEEEeCC
Q 016296 138 AIDIVNFGE 146 (392)
Q Consensus 138 ~VdiI~fG~ 146 (392)
. +|+|+.
T Consensus 178 ~--~i~~~~ 184 (602)
T KOG2327|consen 178 K--DIGFHH 184 (602)
T ss_pred c--eeeeee
Confidence 3 777773
No 97
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=72.21 E-value=31 Score=36.73 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 90 gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
|..+|...+++.+ +...+||+||.|. .+ +.++-+.+|+.|+..|+.|.|+-++...
T Consensus 43 G~ava~~i~~~~~-~~~~~~VlVlcG~-GN-NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 43 GLSVASAIAEVYS-PSEYRRVLALCGP-GN-NGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEEECC-CC-CHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 4555555554432 2123566666544 43 4788899999999999999999988643
No 98
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.78 E-value=50 Score=37.80 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=88.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCc-------------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGV------------------------- 59 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~------------------------- 59 (392)
-.+++||+|-+...--| |+..+.++..=++.+- -+|..+||+|++-...-
T Consensus 296 vy~FliDVS~~a~ksG~----L~~~~~slL~~LD~lp-gd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp 370 (887)
T KOG1985|consen 296 VYVFLIDVSISAIKSGY----LETVARSLLENLDALP-GDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLP 370 (887)
T ss_pred eEEEEEEeehHhhhhhH----HHHHHHHHHHhhhcCC-CCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccC
Confidence 35788999977543222 3344444444444433 56999999999864310
Q ss_pred ---eEEECCCCCHHHHHHhhccc------ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC---------C
Q 016296 60 ---RVLTTPTTDLGKILACMHEL------DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---------D 121 (392)
Q Consensus 60 ---~vlvtlT~D~~kil~~L~~i------~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~---------d 121 (392)
.+|++|-.-...|...|+++ .-.-+..|+.||+.|...+.. ..-||++|..++-+. +
T Consensus 371 ~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----~GGri~vf~s~lPnlG~G~L~~rEd 445 (887)
T KOG1985|consen 371 MPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----TGGRISVFQSTLPNLGAGKLKPRED 445 (887)
T ss_pred CchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----cCCeEEEEeccCCCCCccccccccc
Confidence 11222222222233444443 123367899999999888865 455899998775431 1
Q ss_pred -------hhh--------H-HHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 122 -------RKV--------M-EMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 122 -------~~~--------l-~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
+.. - .+++-.+.|-+|.||.--|.+.- .-..-|..+.+
T Consensus 446 p~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY-~DlAsLs~Lsk 499 (887)
T KOG1985|consen 446 PNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQY-TDLASLSCLSK 499 (887)
T ss_pred cccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccc-cchhhhhcccc
Confidence 111 1 35677889999999999999875 44555655543
No 99
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=71.46 E-value=52 Score=30.19 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSD 182 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD 182 (392)
...++|+|+|..... ....+.++++++++ .++.+.++|-|... ..++.+++..+. ..++...... ..+.+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~--~~~v~~~g~~-~~~~~ 248 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER----EALEALIKELGL--EDRVILLGFT-KNIEE 248 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH----HHHHHHHHHcCC--CCeEEEcCCc-chHHH
Confidence 456678898885543 45567788888874 46777777765443 466666665432 2334333332 23555
Q ss_pred hhhcCCc
Q 016296 183 VLISSPV 189 (392)
Q Consensus 183 ~l~sspi 189 (392)
.+..+-+
T Consensus 249 ~~~~ad~ 255 (348)
T cd03820 249 YYAKASI 255 (348)
T ss_pred HHHhCCE
Confidence 5555444
No 100
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.74 E-value=13 Score=27.31 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|......++-+.++.+.|.+.+|+|+.|+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788887778888899999999999999999875
No 101
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.70 E-value=23 Score=32.32 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhh---h
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL---I 185 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l---~ 185 (392)
+++|+.|| +.|-....++.+.|++.||.+++--.+.. .+.+.+.+|++..+..+-.-||.+--...-|.=+| .
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 57778888 34677889999999999999997665554 47889999998876533233444432222244333 3
Q ss_pred cCCcc
Q 016296 186 SSPVF 190 (392)
Q Consensus 186 sspi~ 190 (392)
..|++
T Consensus 78 ~~PVI 82 (150)
T PF00731_consen 78 TLPVI 82 (150)
T ss_dssp SS-EE
T ss_pred CCCEE
Confidence 44665
No 102
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=70.20 E-value=48 Score=30.95 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
....+|+|+|..... ....+.+++++++++ ++.+.++|-|.. .+.++.+++..+.
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~ 257 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE----REELEELARELGL 257 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHHcCC
Confidence 345577888875433 456788888888874 566666654432 3467777765543
No 103
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.91 E-value=13 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|+.....++-+.++.+.|.+.+|+|+.|+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788887888889999999999999999998876
No 104
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=69.09 E-value=42 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
..+.+|+|+|..... ....+.++++++++. ++.+.++|-|... +.++.++.
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~----~~~~~~~~ 270 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK----EELKELAK 270 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH----HHHHHHHH
Confidence 445678888875543 556788888888877 7777777655443 35555543
No 105
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.42 E-value=19 Score=37.65 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=46.7
Q ss_pred CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 103 NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 103 ~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
++..++|+||||=+.+.-.|+ +--=|..|.+.|-.|++|||++.. -++++. | +.+.|++.+|+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPR-MqYHA~Sla~~gf~VdliGy~~s~-----p~e~l~---~-hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPR-MQYHALSLAKLGFQVDLIGYVESI-----PLEELL---N-HPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChH-HHHHHHHHHHcCCeEEEEEecCCC-----ChHHHh---c-CCceEEEeCCC
Confidence 456788899998777766564 445567888999999999999986 234444 3 46778888876
No 106
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=68.41 E-value=17 Score=34.44 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC-Chhhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG-PNALS 181 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g-~~lLs 181 (392)
.....|+|+|..... +...+.++++++++. ++.+.++|-|... +.++.+++..+-.+ ++.....- ..-+.
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~--~v~~~g~~~~~~l~ 250 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLR----DELEALIAELGLED--RVTLLGAKSQEEVR 250 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccH----HHHHHHHHHcCCCC--eEEECCcCChHHHH
Confidence 345567788875433 566788889898886 6667776655443 47788877664333 23323221 12355
Q ss_pred hhhhcCCcc
Q 016296 182 DVLISSPVF 190 (392)
Q Consensus 182 D~l~sspi~ 190 (392)
+.+..+.|+
T Consensus 251 ~~~~~adi~ 259 (355)
T cd03799 251 ELLRAADLF 259 (355)
T ss_pred HHHHhCCEE
Confidence 666555553
No 107
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=68.25 E-value=11 Score=32.66 Aligned_cols=57 Identities=19% Similarity=0.470 Sum_probs=39.2
Q ss_pred cEEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCCCCC-----------CcHHHHHHHHHHHcC
Q 016296 108 QRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDD-----------GKPEKLEALLAAVNN 164 (392)
Q Consensus 108 ~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~-----------~n~~~l~~~~~~vn~ 164 (392)
+||++|+||+... +..-+..+++.+++.++.+.+|.+.+... ...+.++++.+.+..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 4799999999643 34445677888888899999999987410 123455666666653
No 108
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=67.48 E-value=53 Score=30.89 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhCC--ceEEEEEeCCCC
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS--VAIDIVNFGEDD 148 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKknn--I~VdiI~fG~e~ 148 (392)
.+.+|+|+|..... +...+.++++.+++.+ +.+.++|-+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~ 238 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL 238 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 45578888886543 5667888999998886 677777655443
No 109
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.26 E-value=16 Score=26.78 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|......++-+.++.+.|++.+|.|+.|+.+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788787778888999999999999999999876
No 110
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=67.08 E-value=1.6e+02 Score=31.35 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=63.7
Q ss_pred ceEEEE-EeCCccccCCCCCCcHHHHHHHHHHHH---HHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 016296 4 EATMIC-IDNSEWMRNGDYSPSRLRAQADAVSLI---CGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (392)
Q Consensus 4 Ea~~Iv-IDnSesMrngD~~PtRl~aq~dav~~f---v~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i 79 (392)
.||||| .|+|-||... .|+.++.| +..|+..+.+ +|=++-++-.....-|+ - -.+.| .
T Consensus 246 ~AVv~~lmDvSGSM~~~---------~K~lak~ff~~l~~fL~~~Y~-~Ve~vfI~H~t~A~EVd----E---e~FF~-~ 307 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGEF---------KKDLAKRFFFWLYLFLRRKYE-NVEIVFIRHHTEAKEVD----E---EEFFH-S 307 (421)
T ss_pred cEEEEEEEeCCCCCchH---------HHHHHHHHHHHHHHHHHhccC-ceEEEEEeecCceEEec----H---HHhcc-c
Confidence 467776 5999999742 23333222 2344555566 37777766543211111 1 12222 3
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC---CChhhHHHHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---YDRKVMEMIGK 130 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~---~d~~~l~~~ak 130 (392)
.-+|+|-+..|++.|...+..|-++...- |=+|-.|... .|.....++.+
T Consensus 308 ~esGGT~vSSA~~l~~~ii~erypp~~wN-iY~~~~SDGDN~~~D~~~~~~ll~ 360 (421)
T PF04285_consen 308 RESGGTRVSSAYELALEIIEERYPPSDWN-IYVFHASDGDNWSSDNERCVELLE 360 (421)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCChhhce-eeeEEcccCccccCCCHHHHHHHH
Confidence 45789999999999999998875544443 6667666664 34555555544
No 111
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=65.99 E-value=39 Score=37.05 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=79.1
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhc-CCCCCcEE----EEEecCCC-ceEEECCCCCH-----HHHH
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQ-SNPENTVG----ILTMGGKG-VRVLTTPTTDL-----GKIL 73 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~-~NPes~VG----Lvtmag~~-~~vlvtlT~D~-----~kil 73 (392)
++-|.||+|-||-+. +.-++..+-.|.+++.- .++...+| +.+|-... +-|.+.--.|+ +++-
T Consensus 448 a~TLLvD~S~St~a~------mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~ 521 (637)
T COG4548 448 AFTLLVDVSASTDAK------MDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVG 521 (637)
T ss_pred eeEEEeecccchHHH------hhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccc
Confidence 578999999998643 33344555555544321 12222222 12222211 11211111111 1222
Q ss_pred HhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-C----h---hhHHHHHHHHHhCCceEEEEEeC
Q 016296 74 ACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-D----R---KVMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 74 ~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d----~---~~l~~~ak~LKknnI~VdiI~fG 145 (392)
-.|-.++|+--+..+.||+.|..-|-||+ ++++=.|||+++.-+. | . .+-..+.-..+|.||.|.-|-+.
T Consensus 522 ~RImALePg~ytR~G~AIR~As~kL~~rp--q~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld 599 (637)
T COG4548 522 PRIMALEPGYYTRDGAAIRHASAKLMERP--QRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLD 599 (637)
T ss_pred hhheecCccccccccHHHHHHHHHHhcCc--ccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEec
Confidence 34445688888999999999999999974 3455577777554432 3 1 23456677889999999888887
Q ss_pred CCC
Q 016296 146 EDD 148 (392)
Q Consensus 146 ~e~ 148 (392)
.+.
T Consensus 600 ~ea 602 (637)
T COG4548 600 REA 602 (637)
T ss_pred chh
Confidence 654
No 112
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=65.35 E-value=21 Score=35.89 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=47.2
Q ss_pred cCcHHHHHHHHHHHhcc----cCCCCCCcEEEEEEcCCC--CCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 84 EMNIAAGIQVAQLALKH----RQNKNQRQRIIVFAGSPV--KYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 84 ~~sL~~gL~vA~laLkh----r~~k~~~~RIVvFvgSp~--~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..++..||.+|...+.+ |.-++..+-|||+.-+.. ..|.+-+.-+-++|-.++|.||+|++|..-
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~P 272 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKPP 272 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCCC
Confidence 56788888888877643 222446666777664444 246666777889999999999999999853
No 113
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=65.08 E-value=90 Score=34.17 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=69.8
Q ss_pred cCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCC
Q 016296 42 QSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYD 121 (392)
Q Consensus 42 ~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d 121 (392)
..+|..++|-|+.-|. +...+...+..+--..+.. ++...+...++.|+.|| +.|
T Consensus 368 ~~r~~rkmGhV~~~g~----------~~~e~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~i~~gs--~sd 422 (577)
T PLN02948 368 EMRKQRKMGHITVVGP----------SAAEVEARLDQLLAEESAD-------------PDALPKGTPLVGIIMGS--DSD 422 (577)
T ss_pred CCCCCCeeEEEEEecC----------CHHHHHHHHHHHHhhhccC-------------CCCCCCCCCeEEEEECc--hhh
Confidence 4566777887777654 4555555544431111100 11112344557788888 447
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhh
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
-..+.++++.|++.||..++--.|.. .+.+++..|++.....+-.-+|.+--...-|.-++
T Consensus 423 ~~~~~~~~~~l~~~g~~~~~~v~sah--r~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 423 LPTMKDAAEILDSFGVPYEVTIVSAH--RTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCc--cCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 88899999999999999886555554 57899999988776444334444433222244444
No 114
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=65.06 E-value=16 Score=38.06 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
....+|+|+|..... +-..+.++++.+++. ++++.|||-|.+...-.+.|+++++..+
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~ 351 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLG 351 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhC
Confidence 445688899886643 566778888888775 5777777766543223467788887665
No 115
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=64.82 E-value=37 Score=32.67 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
...+.|+|+|+.... ....+.++++++++. ++.+.+||-|... +.++.+++..+
T Consensus 186 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~~~~~~~ 242 (367)
T cd05844 186 RRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLL----AALEALARALG 242 (367)
T ss_pred CCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHH----HHHHHHHHHcC
Confidence 345578888886543 445677888888764 6777787765433 47788877643
No 116
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.58 E-value=33 Score=32.58 Aligned_cols=51 Identities=29% Similarity=0.369 Sum_probs=32.6
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
...+|+|+|..... +...+.+++++++ ++.+.++|=|... ..++.+++..+
T Consensus 190 ~~~~i~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~----~~~~~~~~~~~ 241 (357)
T cd03795 190 GRPFFLFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE----AELEALAAALG 241 (357)
T ss_pred CCcEEEEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH----HHHHHHHHhcC
Confidence 44578888885433 4455666666665 6888888876543 46677765444
No 117
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=63.97 E-value=96 Score=26.96 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=44.2
Q ss_pred HHHhhcccccCC--cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 72 ILACMHELDIGG--EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 72 il~~L~~i~~~G--~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+...+.++.+.+ +-+...++.+....+.. +..+.-+||++|+-......++.++.+++++ +.+|.+|+.-.
T Consensus 17 ~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~---~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~~ 89 (150)
T cd01840 17 LQEIFPNIQIDAKVGRQMSEAPDLIRQLKDS---GKLRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPHV 89 (150)
T ss_pred HHHHCCCCEEEeeecccHHHHHHHHHHHHHc---CCCCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECCC
Confidence 334444544433 23445677666544431 2345667777788665678999999999964 67777776653
No 118
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=63.20 E-value=11 Score=38.46 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
...|+|+|..... .-..+.+++++|++. ++++.|||-|... +.|+++++..+-
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~l 277 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWE----RRLRTLIEQYQL 277 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhH----HHHHHHHHHcCC
Confidence 3457888886644 556688888888775 5778888877654 578888877643
No 119
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=63.06 E-value=1.3e+02 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
....+|+|+|..... ....+.++++++++.++.+.++|-|...
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~ 232 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL 232 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh
Confidence 445577888885543 4566778888888778888888877654
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=62.78 E-value=35 Score=29.41 Aligned_cols=133 Identities=26% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCCcEEEEEEcCCCCC-ChhhHHHHHHHHH---hCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChh
Q 016296 104 KNQRQRIIVFAGSPVKY-DRKVMEMIGKKLK---KNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNA 179 (392)
Q Consensus 104 k~~~~RIVvFvgSp~~~-d~~~l~~~ak~LK---knnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~l 179 (392)
....+.+|+|+|..... +...+.++++.++ ..++.+-|+|.+ .....++.+++..+..++-+++.-.+ .+-
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 85 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLKENIIFLGYVP-DDE 85 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCGTTEEEEESHS-HHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccccccccccccc-ccc
Confidence 34556678888886654 6677888888886 456766666622 34467888887776555555554444 234
Q ss_pred hhhhhhcCCcccCC--CCCCCc--hhHHHHhh----hc---------CCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHH
Q 016296 180 LSDVLISSPVFTAD--GEGGSG--FAAAAAAA----AA---------GGVSDFDFGVDPNIDPELALALRVSMEEERARQ 242 (392)
Q Consensus 180 LsD~l~sspi~~~~--~~~~~~--~~~~~~~~----~~---------~~~~~~efgvDp~~DPELa~Alr~SlEEe~~rq 242 (392)
|.+.+-.+.|+--- .++.+. ..+...|. .. .+..++ =+++..--+|+-+|+.-+.....|+
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~--~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGF--LFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEE--EESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceE--EeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 66666666554211 010110 01111110 00 011111 1466766789999998887775554
Q ss_pred H
Q 016296 243 E 243 (392)
Q Consensus 243 ~ 243 (392)
.
T Consensus 164 ~ 164 (172)
T PF00534_consen 164 K 164 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 121
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=62.48 E-value=22 Score=32.87 Aligned_cols=58 Identities=12% Similarity=0.258 Sum_probs=45.0
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
...|+.+...|+.+..++.+. +-.+||+|+|. .+..-+.+.++..|.+|.+|+++...
T Consensus 89 ~~k~~vDv~la~D~~~l~~~~-----~~D~ivl~SgD------~DF~p~v~~~~~~G~rv~v~~~~~~~ 146 (181)
T COG1432 89 ITKGDVDVELAVDAMELADKK-----NVDTIVLFSGD------GDFIPLVEAARDKGKRVEVAGIEPMT 146 (181)
T ss_pred ccccCcchhhHHHHHHhhccc-----CCCEEEEEcCC------ccHHHHHHHHHHcCCEEEEEecCCcC
Confidence 446888999999998888743 45567777543 35666799999999999999999943
No 122
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=62.44 E-value=40 Score=31.42 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
..+.+|+|+|..... ....+.+++++|++. ++.+.+||-|... ....++.+++..+
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~ 259 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG--YRAELKQIAAALG 259 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc--hHHHHHHHHHhcC
Confidence 445678888875543 456677888888884 6666666655443 3455666554443
No 123
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.97 E-value=26 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=29.4
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
|-++|.+....++-+.++.+.|++++|+|+.|+-+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 455677765667788899999999999999998764
No 124
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=60.73 E-value=36 Score=31.24 Aligned_cols=80 Identities=26% Similarity=0.328 Sum_probs=43.8
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSD 182 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD 182 (392)
..+..|+|+|+.... .-..+.++++.+++. ++.+.++|-| .....++.+++..+..++-++.--.+.. -+.+
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~ 271 (374)
T cd03801 197 EDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG----PLREELEALAAELGLGDRVTFLGFVPDE-DLPA 271 (374)
T ss_pred CCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc----HHHHHHHHHHHHhCCCcceEEEeccChh-hHHH
Confidence 445578888876533 455677888888776 5666666622 2345666666554433332222222212 3555
Q ss_pred hhhcCCcc
Q 016296 183 VLISSPVF 190 (392)
Q Consensus 183 ~l~sspi~ 190 (392)
.+..+-|+
T Consensus 272 ~~~~~di~ 279 (374)
T cd03801 272 LYAAADVF 279 (374)
T ss_pred HHHhcCEE
Confidence 55555543
No 125
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.37 E-value=1.6e+02 Score=28.24 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhh
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
..++|+|+|..... ....+.++.+++++. ++++.++|-|. +.+.++++++..+-.+ ++..+..-++ +.+.+
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~----~~~~~~~~~~~~~~~~--~v~~~g~~~~-~~~~~ 268 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP----ERSPAERLARELGLQD--DVLFLGKQDH-VEELL 268 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc----CHHHHHHHHHHcCCCc--eEEEecCccc-HHHHH
Confidence 45678888876543 555677777777664 56666666543 2357788877654333 3333333332 55666
Q ss_pred hcCCcc
Q 016296 185 ISSPVF 190 (392)
Q Consensus 185 ~sspi~ 190 (392)
..+.++
T Consensus 269 ~~~d~~ 274 (371)
T cd04962 269 SIADLF 274 (371)
T ss_pred HhcCEE
Confidence 555553
No 126
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.78 E-value=26 Score=26.55 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+|-+||. ...+++-+.++.+.|.++||+|..|+.|+..
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 6788898 6666777789999999999999999999875
No 127
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=58.39 E-value=1.4e+02 Score=29.29 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=43.2
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC------CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChh
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN------SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNA 179 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn------nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~l 179 (392)
.+.+|+++|..... +...+.++++.+.+. ++.+-+||=|.. .+.++++++..+- .+.+.++....-
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~---~~~v~~~g~~~~ 265 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA----RGACEQMVRAAGL---AHLVWLPGERDD 265 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCch----HHHHHHHHHHcCC---cceEEEcCCcCC
Confidence 35578888876543 556677777776544 466666664433 3577888766542 223333321222
Q ss_pred hhhhhhcCCcc
Q 016296 180 LSDVLISSPVF 190 (392)
Q Consensus 180 LsD~l~sspi~ 190 (392)
+.+.+..+.|+
T Consensus 266 ~~~~~~~adi~ 276 (374)
T TIGR03088 266 VPALMQALDLF 276 (374)
T ss_pred HHHHHHhcCEE
Confidence 55555555554
No 128
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=58.19 E-value=1.6e+02 Score=27.31 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.4
Q ss_pred cEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
..+|+|+|..... ....+.++++++++. ++++.++|-|... ..++.+..
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~----~~~~~~~~ 244 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR----ANLELLAL 244 (365)
T ss_pred CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcch----hHHHHHHH
Confidence 4567788885543 456678888888774 5666666655444 24455544
No 129
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=58.15 E-value=35 Score=33.53 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=37.6
Q ss_pred EEEEEeCCccccCCC----CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC
Q 016296 6 TMICIDNSEWMRNGD----YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG 58 (392)
Q Consensus 6 ~~IvIDnSesMrngD----~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~ 58 (392)
--|+|..|-+...++ +.|.++..-.+-++.++.. ..+||||+=+|.-
T Consensus 6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~------g~eV~iVvGGGni 56 (238)
T COG0528 6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDL------GVEVAVVVGGGNI 56 (238)
T ss_pred EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhc------CcEEEEEECCCHH
Confidence 357889999999886 6788998888888888775 4599999877754
No 130
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=56.88 E-value=25 Score=33.87 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=45.7
Q ss_pred CCCCCcEEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCCCCCC-----cHHHHHHHHHHHcCCCCceEEEecC
Q 016296 103 NKNQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDG-----KPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 103 ~k~~~~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~~-----n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
.+++..+|++|+||.... +..-+..+++.+...++.|.+|.+..--.. ..+-.+.|.+.+..-| -+|.+.|
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD--gvii~TP 99 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE--GQVWCSP 99 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC--EEEEeCC
Confidence 356778899999998765 344455667777767999999998752211 1335566666665433 3444444
No 131
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.48 E-value=36 Score=31.83 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=41.3
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
++|+|||.....=--.+.|+|.++++++-+|-+|+.-.---.-.+-|+.|++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 5888988866554446889999999999999999987643245788999998885
No 132
>PRK05325 hypothetical protein; Provisional
Probab=56.18 E-value=1.1e+02 Score=32.44 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=82.1
Q ss_pred ceEEEEE-eCCccccCCCCCCcHHHHHHHHHHHHH---HhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 016296 4 EATMICI-DNSEWMRNGDYSPSRLRAQADAVSLIC---GAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (392)
Q Consensus 4 Ea~~IvI-DnSesMrngD~~PtRl~aq~dav~~fv---~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i 79 (392)
.|||||| |+|-||.. ..|+.+..|+ -.|+.-+. .+|=++-++-..-..-|+ - -.+.+ .
T Consensus 222 ~AVmfclMDvSGSM~~---------~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t~AkEVd----E---eeFF~-~ 283 (401)
T PRK05325 222 QAVMFCLMDVSGSMDE---------AEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHTEAKEVD----E---EEFFY-S 283 (401)
T ss_pred cEEEEEEEeCCCCCch---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCceeEcC----H---HHccc-c
Confidence 4777775 99999974 2344333332 23333444 578777777543211111 1 12222 3
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC---ChhhHHHHHH-HHHhCCceEEEEEeCCCCCC---cH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---DRKVMEMIGK-KLKKNSVAIDIVNFGEDDDG---KP 152 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~---d~~~l~~~ak-~LKknnI~VdiI~fG~e~~~---n~ 152 (392)
.-.|+|-+..|+++|+..+..|-++...- |=+|=.|.... |.....++.+ +|-. .|...++++-... +.
T Consensus 284 ~esGGT~vSSA~~l~~eIi~~rYpp~~wN-IY~f~aSDGDNw~~D~~~~~~ll~~~llp---~~~~f~Y~Ev~~~~~~~~ 359 (401)
T PRK05325 284 RESGGTIVSSAYKLALEIIEERYPPAEWN-IYAFQASDGDNWSSDNPRCVELLREELLP---VCNYFAYIEVTPRAYRHQ 359 (401)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCCHhHCe-eEEEEcccCCCcCCCCHHHHHHHHHHHHH---HhhheEEEEecCCCCCch
Confidence 45789999999999999999875444444 66676776653 4444444443 2211 3556666664421 35
Q ss_pred HHHHHHHHHHcCCCCceEEEec
Q 016296 153 EKLEALLAAVNNNDSSHLVHVP 174 (392)
Q Consensus 153 ~~l~~~~~~vn~~d~Sh~v~vp 174 (392)
..+..|- .+... ..||+..-
T Consensus 360 ~l~~~y~-~i~~~-~~~f~~~~ 379 (401)
T PRK05325 360 TLWREYE-RLQDT-FPNFAMQR 379 (401)
T ss_pred HHHHHHH-Hhhcc-CCCeEEEE
Confidence 5666664 66543 23454443
No 133
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=55.27 E-value=1.1e+02 Score=31.91 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=81.3
Q ss_pred ceEEEE-EeCCccccCCCCCCcHHHHHHHHHHHHH---HhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 016296 4 EATMIC-IDNSEWMRNGDYSPSRLRAQADAVSLIC---GAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (392)
Q Consensus 4 Ea~~Iv-IDnSesMrngD~~PtRl~aq~dav~~fv---~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i 79 (392)
.|+||| .|+|-||.. ..|+.++.|+ -.|+..+. .+|=|+-++-.....-|+ - -.+.|.
T Consensus 202 ~AV~fc~MDvSGSM~~---------~~K~lak~ff~~ly~FL~~~Y-~~VeivFI~H~t~AkEVd----E---eeFF~~- 263 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQ---------FKKYIARSFFFWMVKFLRTKY-ENVEICFISHHTEAKEVT----E---EEFFHK- 263 (371)
T ss_pred cEEEEEEEeCCCCCCH---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCeeEEcC----H---HHhccc-
Confidence 467776 599999953 3444444332 22344444 378777777543222111 1 123333
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC---ChhhHHHHHHHHHhCCceEEEEEeCCCCC--CcHHH
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGEDDD--GKPEK 154 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~e~~--~n~~~ 154 (392)
.-.|+|-+..|+++|+..++.|-++...- |=+|=.|.... |.....++.++|-. .|..+++|+-.. .....
T Consensus 264 ~EsGGT~vSSA~~l~~eII~~rYpp~~wN-IY~f~aSDGDNw~~D~~~c~~ll~~llp---~~~~f~Y~Ei~~~~~~~~l 339 (371)
T TIGR02877 264 GESGGTYCSSGYKKALEIIDERYNPARYN-IYAFHFSDGDNLTSDNERAVKLVRKLLE---VCNLFGYGEIMPYGYSNTL 339 (371)
T ss_pred CCCCCeEehHHHHHHHHHHHhhCChhhCe-eEEEEcccCCCccCCcHHHHHHHHHHHH---hhheEEEEEecCCCCcchH
Confidence 34788999999999999999875444444 66676666653 33334444333322 256677776542 12456
Q ss_pred HHHHHHHHcCCCCceEEEe
Q 016296 155 LEALLAAVNNNDSSHLVHV 173 (392)
Q Consensus 155 l~~~~~~vn~~d~Sh~v~v 173 (392)
+..|-+.+.. .||+..
T Consensus 340 ~~~y~~~i~~---~~f~~~ 355 (371)
T TIGR02877 340 KNKFKNEIKD---PNFVPL 355 (371)
T ss_pred HHHHHhhhcC---CCeEEE
Confidence 7777443652 445444
No 134
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=55.00 E-value=18 Score=31.21 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=25.0
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
|||++.+++.+.. .+ ...++++|++.|+.|++|-
T Consensus 1 k~i~l~vtGs~~~-~~-~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAA-YK-APDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGG-GG-HHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHH-HH-HHHHHHHHhhCCCEEEEEE
Confidence 5788888765543 33 8899999999999998764
No 135
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=54.68 E-value=43 Score=31.48 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=34.7
Q ss_pred HHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 90 gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
|..+|...+++.+ ..+||+||.|+ .+ +.++-+.+|+.|+..+|.|.+++...
T Consensus 31 g~~va~~i~~~~~---~~~~v~vl~G~-GN-NGGDGlv~AR~L~~~~v~V~~~~~~~ 82 (205)
T TIGR00197 31 GKAVAQAVLQAFP---LAGHVIIFCGP-GN-NGGDGFVVARHLKGFGVEVFLLKKEK 82 (205)
T ss_pred HHHHHHHHHHHcC---CCCeEEEEECC-CC-CccHHHHHHHHHHhCCCEEEEEccCC
Confidence 4455555554432 24567766655 33 46788899999998899888887654
No 136
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=53.92 E-value=42 Score=32.72 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=27.5
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
.+||+||.|+ .+ +.++-+.+|+.|+..|+.|.|+-
T Consensus 60 ~~~V~VlcG~-GN-NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 60 HPRVLLVCGP-GN-NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CCeEEEEECC-CC-CchhHHHHHHHHHHCCCeEEEEE
Confidence 3567766665 33 47888999999999999999887
No 137
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=53.72 E-value=28 Score=27.49 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred ceEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcC
Q 016296 4 EATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQS 43 (392)
Q Consensus 4 Ea~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~ 43 (392)
..++|++|.+.+|.-+.-....++....++..++....++
T Consensus 41 ~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~ 80 (86)
T PF01882_consen 41 QPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQ 80 (86)
T ss_pred CcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999988999999999999988887655
No 138
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=53.56 E-value=54 Score=30.28 Aligned_cols=54 Identities=30% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
..++.|+|+|..... ....+.++++++++. ++.+.++|-|... ..++.+++..+
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~~~~~~ 256 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR----EALEALAAELG 256 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch----HHHHHHHHhcC
Confidence 355678888875443 456678888888876 5666666554433 46666665443
No 139
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=50.96 E-value=13 Score=37.08 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=27.9
Q ss_pred CChHHHHHHHHhhccCCCCCCCCCcccCCCCCCChHHHHHHHHHcccCC
Q 016296 291 DEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQD 339 (392)
Q Consensus 291 ~~e~~~L~~Al~~S~~~~~~~~~~~~~~~~~~~~ee~~ia~A~~ms~~~ 339 (392)
+.++.-|++|++||+++. ..||+.+..||+.||+.
T Consensus 216 dq~e~d~a~a~a~s~~et--------------~~ede~lrsaie~s~~~ 250 (315)
T KOG2935|consen 216 DQDEEDLARALALSRQET--------------EMEDEDLRSAIELSMQS 250 (315)
T ss_pred ccchHHHHHHHHHHHhhh--------------hcccHHHHHHHHhhhhh
Confidence 356778999999997654 34567899999999985
No 140
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.65 E-value=47 Score=25.53 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|.....+++-+.++.+.|++.+|.++.|+.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3556677777778888899999999999999999874
No 141
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.40 E-value=43 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=27.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
|-++|......++-+.++.+.|.+++|+|+.|+.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4566766666677788999999999999999983
No 142
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.02 E-value=96 Score=28.63 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
|-..+.++++.|++.||..++--.+.. ...+.+.+|++...
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaH--Rtp~~~~~~~~~a~ 50 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAH--RTPELMLEYAKEAE 50 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcc--cCHHHHHHHHHHHH
Confidence 444555555555555555554444433 24555555554443
No 143
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=49.61 E-value=45 Score=23.88 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=27.5
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
|-++|.....+++-+.++.+.|.+.||+|+.|+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566766666677788999999999999999983
No 144
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=49.07 E-value=52 Score=31.24 Aligned_cols=53 Identities=23% Similarity=0.199 Sum_probs=35.3
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
..++|+|+|+.... .-..+.++++++++. ++.+.++|-|... +.++++++..+
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 242 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR----ATLERLIKALG 242 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH----HHHHHHHHhcC
Confidence 45688888875433 455677888887765 6777777755543 46777776654
No 145
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=48.50 E-value=49 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|-++|......++-+.++.+.|.+.+|+++.|+-+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556677776667778889999999999999987754
No 146
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=48.43 E-value=63 Score=27.82 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 84 ~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
..++.-++.+..++..+ ....|||+ ++ .++..-++++|++.|++|-++++.... ...|+..+
T Consensus 82 ~~D~~l~~d~~~~~~~~-----~~d~ivLv-Sg-----D~Df~~~i~~lr~~G~~V~v~~~~~~~---s~~L~~~~ 143 (149)
T cd06167 82 GVDVALAIDALELAYKR-----RIDTIVLV-SG-----DSDFVPLVERLRELGKRVIVVGFEAKT---SRELRKAA 143 (149)
T ss_pred CccHHHHHHHHHHhhhc-----CCCEEEEE-EC-----CccHHHHHHHHHHcCCEEEEEccCccC---hHHHHHhC
Confidence 46666666666555543 33445555 43 237888999999999999999998333 23555444
No 147
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=47.93 E-value=52 Score=25.16 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+|-.||.... .++-+.++.+.|.+++|+|..|+.|+..
T Consensus 4 ~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 4 IVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred EEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6788898775 6777789999999999999999999864
No 148
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=47.75 E-value=27 Score=31.93 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=23.5
Q ss_pred CCCCCH---HHHHHHHhcHHHHHHHHHHHHH
Q 016296 220 DPNIDP---ELALALRVSMEEERARQEAAAK 247 (392)
Q Consensus 220 Dp~~DP---ELa~Alr~SlEEe~~rq~~~~~ 247 (392)
.-++|| ||.|-.|+-+.|+|+|.++++.
T Consensus 112 ~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~ 142 (157)
T PF10293_consen 112 ELEDDPFESELGMIYRLGLDEQRERLEREEA 142 (157)
T ss_pred EEeCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666 9999999999999999887764
No 149
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=47.67 E-value=2.9e+02 Score=28.11 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=39.8
Q ss_pred ceEEEEEeCCcc--ccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC
Q 016296 4 EATMICIDNSEW--MRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG 58 (392)
Q Consensus 4 Ea~~IvIDnSes--MrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~ 58 (392)
.++++|+|.|++ ..-.|-..+||.-.+.....+++... ...+.|+.+.++.
T Consensus 209 ~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~----~~~~piil~~NK~ 261 (342)
T smart00275 209 TAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW----FANTSIILFLNKI 261 (342)
T ss_pred CEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc----ccCCcEEEEEecH
Confidence 589999999998 34566678999999998888888532 3457888888873
No 150
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=47.41 E-value=1.2e+02 Score=32.96 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCC
Q 016296 28 AQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQR 107 (392)
Q Consensus 28 aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~ 107 (392)
.+.||+...=+-...+....+|.+|+++++ ++.+.++..+.|-- ++.+.--+.=..||.-=..=|-. .-+.+
T Consensus 31 r~~Da~~l~~Q~i~~q~~~~r~alI~~~~~-~~~ll~l~~~~gp~-----~l~lf~lp~~~~al~~l~~dl~~--~~~~~ 102 (519)
T PRK15045 31 RHEDAISLANQTIASQAETAHVAVISMDSD-PAKIFQLDDSQGPE-----KIRLFSMPNHEKGLYYLPRDLQC--SIDPH 102 (519)
T ss_pred chhhHHHHHHHHHHhCCCCCeEEEEecCCC-hHHhhcCcccCCCc-----eeeeeecCCCHHHHHHhhHHHhh--ccCCC
Confidence 344544333333445888899999999887 45444444432221 11111111112232222222221 13466
Q ss_pred cEEEEEEcCCCC---CChhh----HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 108 QRIIVFAGSPVK---YDRKV----MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 108 ~RIVvFvgSp~~---~d~~~----l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
.|.+||.+.... -...+ +.++.+-+++.+..+-||+.|...+.-...|-.+.+.+.
T Consensus 103 ~~l~il~~~~~~w~~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~~~~r~l~ 165 (519)
T PRK15045 103 NYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLMEEYRSLF 165 (519)
T ss_pred CcEEEEEccHHHhhcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHHHhhhhcc
Confidence 677777765432 12333 456666688899999999999988311344555554444
No 151
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.61 E-value=58 Score=27.79 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
.|+|+... ..+...+.++++.+|+.+.+|-+|.
T Consensus 64 ~vi~is~~-g~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 64 PVIFLAPE-DRLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred cEEEEecC-ChhHHHHHHHHHHHHHcCCEEEEEe
Confidence 34444432 2335568899999999998665553
No 152
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.50 E-value=2.5e+02 Score=26.23 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCCC-ChhhHHHHHHHHHhC-CceEEEEEeCCCC
Q 016296 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDD 148 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~ 148 (392)
+.+|+|+|..... ....+.++++++++. ++.+.++|-|...
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~ 239 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR 239 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH
Confidence 4578888875433 456788888888774 7888888866543
No 153
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=46.25 E-value=34 Score=28.95 Aligned_cols=50 Identities=14% Similarity=0.301 Sum_probs=27.8
Q ss_pred cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 84 ~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
..+..-++.+...++.+. + ..+||+ ++. ++...++++|+..|++|.+|++
T Consensus 78 ~~D~~l~~d~~~~~~~~~----~-d~ivLv-SgD-----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 78 GVDVALAVDILELAYENP----P-DTIVLV-SGD-----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp --HHHHHHHHHHHG--GG------SEEEEE---------GGGHHHHHHHHHH--EEEEEE-
T ss_pred CcHHHHHHHHHHHhhccC----C-CEEEEE-ECc-----HHHHHHHHHHHHcCCEEEEEEe
Confidence 355555555555555442 2 444444 442 6789999999999999999996
No 154
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=46.14 E-value=2.2e+02 Score=30.18 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=57.2
Q ss_pred ceEEEEE-eCCccccCCCCCCcHHHHHHHHHHHHHH---hhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhccc
Q 016296 4 EATMICI-DNSEWMRNGDYSPSRLRAQADAVSLICG---AKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHEL 79 (392)
Q Consensus 4 Ea~~IvI-DnSesMrngD~~PtRl~aq~dav~~fv~---~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i 79 (392)
-|+|+|| |+|-||.. +-++.++.|+- -|+.-..+ +|=|+-++-..-..-|.=| .+.+ .
T Consensus 246 ~AVmfclMDvSGSM~~---------~~KdlAkrFF~lL~~FL~~kYe-nveivfIrHht~A~EVdE~-------dFF~-~ 307 (423)
T COG2718 246 NAVMFCLMDVSGSMDQ---------SEKDLAKRFFFLLYLFLRRKYE-NVEIVFIRHHTEAKEVDET-------DFFY-S 307 (423)
T ss_pred ceEEEEEEecCCCcch---------HHHHHHHHHHHHHHHHHhcccc-eeEEEEEeecCcceecchh-------hcee-e
Confidence 3677775 99999973 34444444332 22333333 5777777654211111111 1222 2
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK 119 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~ 119 (392)
+-+|+|-+++||+.++..++.|-++...- |-.|-.|...
T Consensus 308 ~esGGTivSSAl~~m~evi~ErYp~aeWN-IY~fqaSDGD 346 (423)
T COG2718 308 QESGGTIVSSALKLMLEVIKERYPPAEWN-IYAFQASDGD 346 (423)
T ss_pred cCCCCeEeHHHHHHHHHHHHhhCChhhee-eeeeeecCCc
Confidence 34788999999999999999986554444 6666666554
No 155
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=45.10 E-value=4.9 Score=38.78 Aligned_cols=72 Identities=15% Similarity=0.306 Sum_probs=40.7
Q ss_pred CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHHHHcCCCCceEEEecCCChh
Q 016296 103 NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK---PEKLEALLAAVNNNDSSHLVHVPTGPNA 179 (392)
Q Consensus 103 ~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n---~~~l~~~~~~vn~~d~Sh~v~vp~g~~l 179 (392)
-+.|++|||+|..+ +-.-++.|++.|..|.-|-+.... .. .+.|..+++.. .-++++++.|+...
T Consensus 37 ~~~HkqKl~l~~sa--------MRhfa~~L~~~G~~V~Y~~~~~~~-~~~s~~~~L~~~~~~~---~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 37 VPHHKQKLVLFFSA--------MRHFADELRAKGFRVHYIELDDPE-NTQSFEDALARALKQH---GIDRLHVMEPGDYR 104 (224)
T ss_dssp S---HHHHHHHHHH--------HHHHHHHHHHTT--EEEE-TT-TT---SSHHHHHHHHHHHH-------EEEE--S-HH
T ss_pred CcccHHHHHHHHHH--------HHHHHHHHHhCCCEEEEEeCCCcc-ccccHHHHHHHHHHHc---CCCEEEEECCCCHH
Confidence 35678888777544 777899999999999999999865 22 34555555443 45788889888766
Q ss_pred hhhhhhc
Q 016296 180 LSDVLIS 186 (392)
Q Consensus 180 LsD~l~s 186 (392)
|...|-+
T Consensus 105 l~~~l~~ 111 (224)
T PF04244_consen 105 LEQRLES 111 (224)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666644
No 156
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=44.86 E-value=1e+02 Score=29.29 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=64.6
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSD 182 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD 182 (392)
..+.+|+|+|..... .-..+.+++++|++. ++++.+||=|.. .+.++.+++..+-. .++...... .-+.+
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~----~~~~~~~~~~~~~~--~~v~~~g~~-~~~~~ 262 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL----EEEIKKKVKELGLE--DKVIFLGVR-NDVPE 262 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHhcCCC--CcEEEeccc-CCHHH
Confidence 455678888885543 455678888888876 455555553332 34677777654322 233333332 22445
Q ss_pred hhhcCCccc----CCCCCCCchhHHHHhh-----hcCCCC----CCccCCCCCCC-HHHHHHHHhcHHHHHHHHHH
Q 016296 183 VLISSPVFT----ADGEGGSGFAAAAAAA-----AAGGVS----DFDFGVDPNID-PELALALRVSMEEERARQEA 244 (392)
Q Consensus 183 ~l~sspi~~----~~~~~~~~~~~~~~~~-----~~~~~~----~~efgvDp~~D-PELa~Alr~SlEEe~~rq~~ 244 (392)
.+-.+-|+- -|+.+-.-..+.+.|. ..+|.. +-..+++++.| -+||-||+--++....|+..
T Consensus 263 ~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 263 LLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred HHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhh
Confidence 544444321 1111000011111111 000100 00113455666 78999999888776655443
No 157
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=44.81 E-value=1e+02 Score=30.91 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=35.3
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
..+.+|+|+|..... ....+.++++.+++++-.+.++-+|... ..+.|+++++..+-
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l 248 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNL 248 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCC
Confidence 345678888875443 4566788888887654444444444432 23578888877653
No 158
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=44.76 E-value=74 Score=29.41 Aligned_cols=109 Identities=23% Similarity=0.219 Sum_probs=65.2
Q ss_pred EEEEecCCCceEEECCCCCHHHHHHhhcccccCCc-CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHH
Q 016296 50 GILTMGGKGVRVLTTPTTDLGKILACMHELDIGGE-MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMI 128 (392)
Q Consensus 50 GLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~-~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ 128 (392)
|||..+|.+ +.+-|+|.+.-|-+ +.+.|. +=|..-|..... ..-++||+++... ....+...
T Consensus 2 avIla~G~G-tRl~plt~~~pK~l-----l~i~g~~pli~~~l~~l~~--------~g~~~ii~V~~~~---~~~~i~~~ 64 (248)
T PF00483_consen 2 AVILAGGKG-TRLRPLTDTIPKPL-----LPIGGKYPLIDYVLENLAN--------AGIKEIIVVVNGY---KEEQIEEH 64 (248)
T ss_dssp EEEEEESCC-GGGTTTTTTSSGGG-----SEETTEEEHHHHHHHHHHH--------TTCSEEEEEEETT---THHHHHHH
T ss_pred EEEECCCCC-ccCchhhhcccccc-----ceecCCCcchhhhhhhhcc--------cCCceEEEEEeec---cccccccc
Confidence 678888887 78889997765421 355666 655555444322 2445555554432 35667777
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCC-CceEEEecCC
Q 016296 129 GKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNND-SSHLVHVPTG 176 (392)
Q Consensus 129 ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d-~Sh~v~vp~g 176 (392)
.+...+.++.|.+|--.... .+..-+......+...+ ...+++++.+
T Consensus 65 ~~~~~~~~~~i~~i~~~~~~-Gta~al~~a~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 65 LGSGYKFGVKIEYIVQPEPL-GTAGALLQALDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HTTSGGGTEEEEEEEESSSS-CHHHHHHHTHHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccceeeeccccc-chhHHHHHHHHHhhhccccceEEEEecc
Confidence 77777778888888777666 45555555555554322 2346666544
No 159
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=43.94 E-value=2.7e+02 Score=27.10 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=34.5
Q ss_pred cEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
...|+|+|..... ....+.++.+++++. ++++.++|.|... ..++.+++..+
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~~~~~~~~~~~ 258 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE----EKLKELIEELG 258 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH----HHHHHHHHHcC
Confidence 3467888875433 455667777777654 6888999988765 36677775543
No 160
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=42.36 E-value=44 Score=26.17 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
.++||++.+.... ..+-..++.++|.+.++.|.++.+
T Consensus 43 ~~~vii~~D~D~a-G~~a~~~~~~~l~~~g~~~~~~~~ 79 (79)
T cd03364 43 AKEVILAFDGDEA-GQKAALRALELLLKLGLNVRVLTL 79 (79)
T ss_pred CCeEEEEECCCHH-HHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4668888776421 234467899999999999999864
No 161
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=41.36 E-value=3.4e+02 Score=26.85 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhCC----ceEEEEEeCCCCC-CcHHHHHHHHHHHc
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNS----VAIDIVNFGEDDD-GKPEKLEALLAAVN 163 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKknn----I~VdiI~fG~e~~-~n~~~l~~~~~~vn 163 (392)
.+++|+|+|..... ....+.++++++++++ +.+-+||-+.... ...+.++.+++..+
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~ 280 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELG 280 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcC
Confidence 45688898886543 4566788888886643 4445555211111 12456777776654
No 162
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=41.34 E-value=62 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCChhhhhhh
Q 016296 125 MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 125 l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
|......|++.||++-+|++|+.. -++.|++.+.- ... |.+.|.. -|+..+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~-----~~~~f~~~~~~-p~~--ly~D~~~-~lY~~l 52 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPE-----GIEKFCELTGF-PFP--LYVDPER-KLYKAL 52 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHH-----HHHHHHhccCC-CCc--EEEeCcH-HHHHHh
Confidence 345567889999999999998875 48999976532 333 4444443 477777
No 163
>PRK06756 flavodoxin; Provisional
Probab=40.70 E-value=45 Score=29.02 Aligned_cols=40 Identities=8% Similarity=0.272 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
++|+|+.+|....++.-...+++.+++.++.|+++.+...
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS 41 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc
Confidence 3677787886666677777889999999999999887543
No 164
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.42 E-value=3.5e+02 Score=27.20 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=45.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCce--EEEecCCChhhhhhhh
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH--LVHVPTGPNALSDVLI 185 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh--~v~vp~g~~lLsD~l~ 185 (392)
||.+|. ...+..=.....|.+++-||.+..+-|.+.. .. +-+...++.+|.++.-| +|-.|--+++-...++
T Consensus 37 ii~vg~-d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~-~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~ 110 (284)
T PRK14179 37 VILVGD-NPASQVYVRNKERSALAAGFKSEVVRLPETI-SQ-EELLDLIERYNQDPTWHGILVQLPLPKHINEEKIL 110 (284)
T ss_pred EEEeCC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHH
Confidence 444443 3333333445689999999999999999876 34 44556778898766444 6665644454444443
No 165
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=40.37 E-value=2.4e+02 Score=24.19 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=39.7
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCCh
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPN 178 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~ 178 (392)
.+=.||++|. ......=.....|.+++-||.+.++-|.+.. ..+-+...++.+|.+.+ .-+|-.|--++
T Consensus 30 P~Laii~vg~-d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~--~~~el~~~i~~lN~D~~V~GIlvq~PLP~~ 100 (117)
T PF00763_consen 30 PKLAIILVGD-DPASISYVRSKQKAAEKLGIEFELIELPEDI--SEEELLELIEKLNEDPSVHGILVQLPLPKH 100 (117)
T ss_dssp -EEEEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTS--SHHHHHHHHHHHHH-TT-SEEEEESSSSTT
T ss_pred cEEEEEecCC-ChhHHHHHHHHHHHHHHcCCceEEEECCCCc--CHHHHHHHHHHHhCCCCCCEEEEcCCCCCC
Confidence 3334455554 2112223456688999999999999998776 35666777788987654 34444444334
No 166
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=40.33 E-value=2.1e+02 Score=28.16 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCC-CcHHHHHHHHHHHcCCCCceEEEecC-CChhh
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDD-GKPEKLEALLAAVNNNDSSHLVHVPT-GPNAL 180 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~-~n~~~l~~~~~~vn~~d~Sh~v~vp~-g~~lL 180 (392)
..+.+|+|+|..... +...+.++.+++++. ++++-+||-|.... +..+.++.+.+..+..+.-+++..++ ....+
T Consensus 188 ~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 188 PERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 345688888875543 455677777777654 68888888775421 12334566655444334334443331 22345
Q ss_pred hhhhhcCCc
Q 016296 181 SDVLISSPV 189 (392)
Q Consensus 181 sD~l~sspi 189 (392)
.+.+-.+.+
T Consensus 268 ~~~~~~ad~ 276 (372)
T cd03792 268 NALQRASTV 276 (372)
T ss_pred HHHHHhCeE
Confidence 555444444
No 167
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=40.15 E-value=1.3e+02 Score=28.53 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=49.2
Q ss_pred CHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 68 DLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 68 D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
|.-..+-.-..|-+.|...-..+-++....+.-. +.+..+.|+|++.||... -..-..+...++..+..|.+++.|-.
T Consensus 27 ~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~INSpGG~-v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 27 DPYNKLFEERIIFLGGQVDDASANDVMAQLLVLE-SIDPDRDITLYINSPGGS-VTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCCc-HHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 3333333334467788877766666555444332 334567799999998864 44445556666666677777777754
Q ss_pred C
Q 016296 148 D 148 (392)
Q Consensus 148 ~ 148 (392)
.
T Consensus 105 a 105 (207)
T PRK12553 105 A 105 (207)
T ss_pred h
Confidence 4
No 168
>PRK08105 flavodoxin; Provisional
Probab=39.94 E-value=35 Score=30.40 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|.||.||-....+.-...+++.|++.++.|.++.+..
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~ 40 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh
Confidence 58889899766677778889999999999999987643
No 169
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=39.88 E-value=28 Score=33.44 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=27.3
Q ss_pred hhhhccCChHHHHHHHhcCC--------------CCCCC-CHHHHHHHH
Q 016296 349 DMSKVLGDQSFVSSILTSLP--------------GVDPN-DPSVKDLIA 382 (392)
Q Consensus 349 ~~~~~~~d~~fl~s~l~~lp--------------gvdpn-~~~i~~~~~ 382 (392)
..--+.-+|+||..+|...| ||||| ||.+-.||+
T Consensus 167 hl~~~~P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 167 HLEVKPPNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred eeEecCCCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 33344468999999999988 69999 898888875
No 170
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=39.03 E-value=2.4e+02 Score=29.73 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=65.5
Q ss_pred EEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCC-----CCHHHHHHhhccc-
Q 016296 6 TMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPT-----TDLGKILACMHEL- 79 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT-----~D~~kil~~L~~i- 79 (392)
+++.+|+|.||. +| +|| .=.|+++..++-+.++ +..|+-. |+..| .|....+..+...
T Consensus 221 lvvL~DVSGSm~--~y--s~~------~L~l~hAl~q~~~R~~--~F~F~TR----Lt~vT~~l~~rD~~~Al~~~~a~v 284 (395)
T COG3552 221 LVVLCDVSGSMS--GY--SRI------FLHLLHALRQQRSRVH--VFLFGTR----LTRVTHMLRERDLEDALRRLSAQV 284 (395)
T ss_pred eEEEEecccchh--hh--HHH------HHHHHHHHHhccccee--EEEeech----HHHHHHHhccCCHHHHHHHHHhhc
Confidence 678899999995 12 222 3345666666766666 5666533 23333 4555555555442
Q ss_pred -ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhC
Q 016296 80 -DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKN 135 (392)
Q Consensus 80 -~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKkn 135 (392)
.-.|++-+++.+.-= +..-|+..=..+.-|||+.++--.++...+..+..+|.+.
T Consensus 285 ~dw~ggTrig~tl~aF-~~~~~~~~L~~gA~VlilsDg~drd~~~~l~~~~~rl~rr 340 (395)
T COG3552 285 KDWDGGTRIGNTLAAF-LRRWHGNVLSGGAVVLILSDGLDRDDIPELVTAMARLRRR 340 (395)
T ss_pred ccccCCcchhHHHHHH-HccccccccCCceEEEEEecccccCCchHHHHHHHHHHHh
Confidence 347889988876432 2222432222345566666665556777777777777643
No 171
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.01 E-value=89 Score=23.74 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
++|+|.|= +.+.+.++.+.+|+.||++.+-+.=++. +-.=.++.|++.+
T Consensus 2 ~~ll~~g~----~~~el~~~l~~~r~~~~~~~~kAvlT~t-N~~Wt~~~L~~El 50 (58)
T PF12646_consen 2 EFLLFSGF----SGEELDKFLDALRKAGIPIPLKAVLTPT-NINWTLKDLLEEL 50 (58)
T ss_pred CEEEECCC----CHHHHHHHHHHHHHcCCCcceEEEECCC-cccCcHHHHHHHH
Confidence 45666333 5778999999999999977777766665 3334455555444
No 172
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=37.71 E-value=1.6e+02 Score=27.40 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=39.7
Q ss_pred ccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 78 ELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 78 ~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
-+-++|..+-..+-++....+.-. .....+.|++++.||... -..-..+...++..+..|.+|++|-..
T Consensus 28 iI~l~g~I~~~~~~~ii~~L~~l~-~~~~~~~i~l~InSpGG~-v~~g~~I~d~l~~~~~~v~t~~~G~Aa 96 (191)
T TIGR00493 28 IIFLSGEVNDSVANLIVAQLLFLE-AEDPEKDIYLYINSPGGS-ITAGLAIYDTMQFIKPDVSTICIGQAA 96 (191)
T ss_pred EEEEccEEChHHHHHHHHHHHHhh-ccCCCCCEEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEEeec
Confidence 356677655544444444333222 234456699999998765 334444555556555667777776654
No 173
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=37.65 E-value=70 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
...+..+++.|+++|+.|++|.++.+.
T Consensus 10 ~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 10 STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 346889999999999999999996553
No 174
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=37.59 E-value=1.5e+02 Score=26.76 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=38.1
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+.+.|...-..+-++....+.-+ .....+.|++++.||... -..-..+...++..+..|.++..|-..
T Consensus 12 i~i~g~I~~~~~~~i~~~l~~~~-~~~~~~~i~l~inSpGG~-v~~~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 12 IFLGGPIDDEVANLIIAQLLYLE-SEDPKKPIYLYINSPGGS-VTAGLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EEEcCEEcHHHHHHHHHHHHHHH-ccCCCCceEEEEECCCCC-HHHHHHHHHHHHhcCCCEEEEEEeEeh
Confidence 34556554444433322222222 233457799999999874 334445555666666777777766544
No 175
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.33 E-value=4.3e+02 Score=26.65 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=51.2
Q ss_pred HHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEE
Q 016296 95 QLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVH 172 (392)
Q Consensus 95 ~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~ 172 (392)
...||.+. ....+-.||.+|. ...+..=.....|.+++-||.+..+-|.+.. . .+-|.+.++.+|.+++ .-+|-
T Consensus 23 i~~l~~~~-~~~P~Laii~vg~-d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-s-~~el~~~I~~lN~D~~V~GIlvq 98 (284)
T PRK14177 23 IEERKTKN-KRIPKLATILVGN-NPASETYVSMKVKACHKVGMGSEMIRLKEQT-T-TEELLGVIDKLNLDPNVDGILLQ 98 (284)
T ss_pred HHHHHhcC-CCCCeEEEEEeCC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-C-HHHHHHHHHHHhCCCCCCeEEEc
Confidence 34455542 1223323444444 3333444556789999999999999998876 3 3455566678987664 44555
Q ss_pred ecCCChhhhhhhh
Q 016296 173 VPTGPNALSDVLI 185 (392)
Q Consensus 173 vp~g~~lLsD~l~ 185 (392)
.|--.++-...++
T Consensus 99 lPLp~~i~~~~i~ 111 (284)
T PRK14177 99 HPVPSQIDERAAF 111 (284)
T ss_pred CCCCCCCCHHHHH
Confidence 5644454444444
No 176
>PRK05569 flavodoxin; Provisional
Probab=37.32 E-value=63 Score=27.69 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+|+|+.+|+...++.-...+++.+++.++.|+++.+....
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~ 42 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC
Confidence 5777888875556666777888898899999988876543
No 177
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=37.02 E-value=1.4e+02 Score=30.97 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
...+|+|+|..... ....+.++++++++.++++-|||-|... -.+.|+.+++.
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPE--LEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHH--HHHHHHHHHHH
Confidence 45688899886654 4556788888998888888888777521 23567777654
No 178
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=36.80 E-value=1e+02 Score=35.12 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=83.5
Q ss_pred eEEEEEeCCccccCCCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCC--------------------------
Q 016296 5 ATMICIDNSEWMRNGDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKG-------------------------- 58 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~-------------------------- 58 (392)
-+++.+|.|.||.+- |+..+..-..+.+..-+.--.-++|.=+|.++.
T Consensus 134 DLYyLMDlS~SM~DD------l~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppf 207 (783)
T KOG1226|consen 134 DLYYLMDLSYSMKDD------LENLKSLGTDLAREMRKLTSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPF 207 (783)
T ss_pred eEEEEeecchhhhhh------HHHHHHHHHHHHHHHHHHhccCCccccchhccccccccccCcHHhcCCCCCcccCCCCc
Confidence 368999999999863 333333333333322222223456655554432
Q ss_pred -ceEEECCCCCHHHHHHhhcccccCCcCcHHHH-HHHHHHHh---cccCCCCCCcEEEEEEcCCC---------------
Q 016296 59 -VRVLTTPTTDLGKILACMHELDIGGEMNIAAG-IQVAQLAL---KHRQNKNQRQRIIVFAGSPV--------------- 118 (392)
Q Consensus 59 -~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~g-L~vA~laL---khr~~k~~~~RIVvFvgSp~--------------- 118 (392)
..=+.+||.|...+.+..++-++.|+.+--.| +..-+++. ++.-=++...|.+||+.-..
T Consensus 208 gfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaavC~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv~p 287 (783)
T KOG1226|consen 208 GFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIVQP 287 (783)
T ss_pred ccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhhccccccccccceeEEEEEcCcceeeecccceeeEecC
Confidence 23356789999999999999877775442222 33333332 34433556788888863211
Q ss_pred ---CC--------------ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 119 ---KY--------------DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 119 ---~~--------------d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.+ |-..+-.++.+|+++||.+. |.--. +....++.+.+.+
T Consensus 288 nDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~I---FAVt~-~~~~~Y~~l~~li 344 (783)
T KOG1226|consen 288 NDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINTI---FAVTK-NSQSLYEELSNLI 344 (783)
T ss_pred CCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchhH---HHHhh-hhhhHHHhhhhhC
Confidence 00 22246788999999999653 33332 3344555555444
No 179
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=36.79 E-value=70 Score=29.77 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=41.2
Q ss_pred cEEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCCCCC-------CcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 108 QRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDD-------GKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 108 ~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~-------~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
++|++|.|||... +..-+..+++.+++.++.|.+|.+.+-.. ...+-++.+.+.+..-| .+|.+-|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD--~iIi~tP 75 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD--GLIVATP 75 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC--EEEEECC
Confidence 3688999998764 33344566778888899999888764210 01235666777775433 4555544
No 180
>COG4907 Predicted membrane protein [Function unknown]
Probab=36.57 E-value=16 Score=39.14 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHcCC--CCceEEEecCC
Q 016296 139 IDIVNFGEDDDGKPEKLEALLAAVNNN--DSSHLVHVPTG 176 (392)
Q Consensus 139 VdiI~fG~e~~~n~~~l~~~~~~vn~~--d~Sh~v~vp~g 176 (392)
|+-+.+|-.. ++++++...+-.. -.||++.+...
T Consensus 517 VYatALGV~d----kVvkam~~~~~~e~ikds~~~i~h~n 552 (595)
T COG4907 517 VYATALGVSD----KVVKAMRKALDMEIIKDSYSPIFHNN 552 (595)
T ss_pred hhhhhhccHH----HHHHHHHHhCcHhHhcccceeEEecc
Confidence 3455666544 4777776444322 25788877653
No 181
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=36.55 E-value=1.6e+02 Score=28.85 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC-----CceEEEEEeCCCCC-C---cHHHHHHHHHH
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-----SVAIDIVNFGEDDD-G---KPEKLEALLAA 161 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-----nI~VdiI~fG~e~~-~---n~~~l~~~~~~ 161 (392)
...+|+++|..... +...+.++++++++. ++.+.+||=|.... . ..+.|+.+++.
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~ 274 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEE 274 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHH
Confidence 34567787775543 667788999998876 56666655443320 1 12567777765
No 182
>PRK05568 flavodoxin; Provisional
Probab=35.89 E-value=72 Score=27.28 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+++|+..|....+++-...+++.+++.++.|.++.+....
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~ 42 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS 42 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4666667765566777788889999999999999886543
No 183
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=35.55 E-value=1.9e+02 Score=25.93 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 109 RIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 109 RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|+++.|||... +.+-+..+++.++..+..+.+|.+..
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 478888998753 22333455667777788888888764
No 184
>PF13362 Toprim_3: Toprim domain
Probab=35.16 E-value=1.1e+02 Score=24.64 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
..++|||+.+..... ......++++++++.++.+.++--+.
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~ 81 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGP 81 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 667788777654331 45678899999999999999997743
No 185
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=34.43 E-value=3.9e+02 Score=25.00 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=28.0
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCC
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGED 147 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (392)
..+.+|+|+|..... ....+.++++++++. ++.+.++|-|..
T Consensus 183 ~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 183 DGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred CCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 345678888876543 456778888888886 566666655443
No 186
>PRK09004 FMN-binding protein MioC; Provisional
Probab=34.00 E-value=58 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
+|+||.+|-....+.-...+++.++..++.|.++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 588888997666677778889999999999998754
No 187
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=33.89 E-value=1.6e+02 Score=29.09 Aligned_cols=52 Identities=12% Similarity=0.275 Sum_probs=34.4
Q ss_pred HhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 97 ALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 97 aLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.|+.......+.++|.|+|.+...=.--+..++..+++.|.+|-+|++-...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3444333345567788887766552233667788899999999999876433
No 188
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.87 E-value=5.2e+02 Score=26.24 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=52.9
Q ss_pred HHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--
Q 016296 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS-- 167 (392)
Q Consensus 90 gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~-- 167 (392)
-|.-....||.+ + ..++=.||.+|. ...+..=.....|.+++-||.+.++-|.+.. .. +-|.+.++.+|.++.
T Consensus 19 ~lk~~i~~l~~~-g-~~P~LaiI~vg~-d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~-~~l~~~I~~lN~D~~V~ 93 (301)
T PRK14194 19 QVREDVRTLKAA-G-IEPALAVILVGN-DPASQVYVRNKILRAEEAGIRSLEHRLPADT-SQ-ARLLALIAELNADPSVN 93 (301)
T ss_pred HHHHHHHHHHhC-C-CCCeEEEEEeCC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHcCCCCCC
Confidence 334444456553 1 123333444444 3333334456688899999999999999876 34 445566678887654
Q ss_pred ceEEEecCCChhhhhhhhc
Q 016296 168 SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 168 Sh~v~vp~g~~lLsD~l~s 186 (392)
.-+|-.|--+++-.+.++.
T Consensus 94 GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 94 GILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred eEEEeCCCCCCCCHHHHHh
Confidence 4555556433444444433
No 189
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=33.70 E-value=3.8e+02 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHh--CCceEEEEEeCCCC
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDD 148 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~ 148 (392)
...+|+|+|..... ....+.++++.+++ .++.+.++|-|...
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 45678888875443 55677888888886 45777777777655
No 190
>PRK06703 flavodoxin; Provisional
Probab=33.56 E-value=65 Score=28.13 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
+++|+.+|....++.-...+++.|.+.++.|+++.+...
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 577788886655677777889999999999999887654
No 191
>PRK10307 putative glycosyl transferase; Provisional
Probab=32.80 E-value=1.2e+02 Score=30.45 Aligned_cols=52 Identities=13% Similarity=0.298 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCC-ChhhHHHHHHHHHhC-CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 108 QRIIVFAGSPVKY-DRKVMEMIGKKLKKN-SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
..+|+|+|..... +-..+.++++++++. ++++.|||=|.. .+.|+++++..+
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~----~~~l~~~~~~~~ 282 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGG----KARLEKMAQCRG 282 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChh----HHHHHHHHHHcC
Confidence 4578888876543 556677888777554 466666665543 357787776554
No 192
>PRK09271 flavodoxin; Provisional
Probab=32.73 E-value=79 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
++|+|+.+|-...+++-...+++.|+..++.|.+..+..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~ 39 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDV 39 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccc
Confidence 367777788655567777888999999999887766543
No 193
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=32.72 E-value=2.2e+02 Score=28.65 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCC
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGED 147 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e 147 (392)
.+++|+|+|..... .-..+.++++++++. ++++-+||-|..
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 45678888886543 445677888887654 677888886654
No 194
>PRK10565 putative carbohydrate kinase; Provisional
Probab=32.65 E-value=1.5e+02 Score=31.92 Aligned_cols=40 Identities=8% Similarity=0.180 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..||+||.|+ .+ +.++-+.+|+.|+..++.|.|+-++...
T Consensus 60 ~~~v~vl~G~-GN-NGGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 60 ARHWLVLCGH-GN-NGGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred CCeEEEEEcC-CC-chHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 3566666554 43 4677799999999999999999998654
No 195
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=32.21 E-value=1.3e+02 Score=23.43 Aligned_cols=34 Identities=6% Similarity=0.164 Sum_probs=27.8
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
|-++|.....+++-+.++...|.+.+|+|+.|+-
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 4455666677788889999999999999999874
No 196
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=31.78 E-value=4.3e+02 Score=28.38 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEec----CCCceEEECCCCC-HHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCC
Q 016296 43 SNPENTVGILTMG----GKGVRVLTTPTTD-LGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSP 117 (392)
Q Consensus 43 ~NPes~VGLvtma----g~~~~vlvtlT~D-~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp 117 (392)
.-|.+.+-++.+. ...+.+++|+++. ...+..+|++.. ...|+. ......+|||++++
T Consensus 229 ~rp~~~~~~~~~~~~~~~~~V~iIvPl~~r~~~~~~~Fl~~~~--------------~~~l~~---~~~~~L~vV~~~~~ 291 (499)
T PF05679_consen 229 QRPFGPLEIVPMPYVTESTRVHIIVPLSGREADWFRRFLENFE--------------KVCLET---DDNVFLTVVLFYDP 291 (499)
T ss_pred EcccCceeEeccccccCCCEEEEEEEecCccHHHHHHHHHHHH--------------HHhccc---CCceEEEEEEecCc
Confidence 3455555555442 3556888999988 888888887653 334443 22444577777775
Q ss_pred CCC-ChhhHHHHHHHHHh--CCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 118 VKY-DRKVMEMIGKKLKK--NSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 118 ~~~-d~~~l~~~ak~LKk--nnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
.+. +..++..+++.+++ ...++.+|.+..+.+.-..-|..-++.. +.++=+..+..+
T Consensus 292 ~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~--~~d~L~f~~Dvd 351 (499)
T PF05679_consen 292 SDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKF--PPDSLLFFCDVD 351 (499)
T ss_pred ccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccC--CCCcEEEEEeCC
Confidence 554 34556677777765 4788999999844434445555554433 245555555554
No 197
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.65 E-value=1.8e+02 Score=28.34 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCc
Q 016296 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSS 168 (392)
Q Consensus 89 ~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~S 168 (392)
+|..+....|++.. ..+.| |.|+|+ +++.+.+++++|++.- .+.|+|+=..-+ +.+-.+++++.++. .+.
T Consensus 89 ~G~dl~~~ll~~~~--~~~~~-v~llG~----~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf-~~~e~~~i~~~I~~-s~~ 158 (243)
T PRK03692 89 AGADLWEALMARAG--KEGTP-VFLVGG----KPEVLAQTEAKLRTQW-NVNIVGSQDGYF-TPEQRQALFERIHA-SGA 158 (243)
T ss_pred ChHHHHHHHHHHHH--hcCCe-EEEECC----CHHHHHHHHHHHHHHh-CCEEEEEeCCCC-CHHHHHHHHHHHHh-cCC
Confidence 35555555555432 13344 567787 5888999999998875 677887643332 33344567777764 456
Q ss_pred eEEEecCC
Q 016296 169 HLVHVPTG 176 (392)
Q Consensus 169 h~v~vp~g 176 (392)
++|.|--|
T Consensus 159 dil~VglG 166 (243)
T PRK03692 159 KIVTVAMG 166 (243)
T ss_pred CEEEEECC
Confidence 78877655
No 198
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=31.54 E-value=1.3e+02 Score=32.96 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 90 GIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 90 gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
|..+|...+++.+ +...++|+|| +++.+ +.+|=+.+|+.|+..|..|.|+-.+.
T Consensus 119 G~avA~~I~~~~~-~~~~~~VlVl-cGpGN-NGGDGLVaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 119 GLSVAASIAEVYK-PGEYSRVLAI-CGPGN-NGGDGLVAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred HHHHHHHHHHhcc-cccCCEEEEE-ECCCc-CHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 4555555554432 2123466655 44444 47888889999999999999877553
No 199
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=31.40 E-value=6.7e+02 Score=32.83 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=80.6
Q ss_pred eEEEEEeCCccccCCCCCC---cHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHH---HHHHhhcc
Q 016296 5 ATMICIDNSEWMRNGDYSP---SRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLG---KILACMHE 78 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~P---tRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~---kil~~L~~ 78 (392)
-+||.||-|.||...--.- .-|.-..+|+..+ --.++.||-|+- .++.+-|.-..+. -+..+-|-
T Consensus 4394 qvmisiddsksmses~~~~la~etl~lvtkals~l--------e~g~iav~kfge-~~~~lh~fdkqfs~esg~~~f~~f 4464 (4600)
T COG5271 4394 QVMISIDDSKSMSESGSTVLALETLALVTKALSLL--------EVGQIAVMKFGE-QPELLHPFDKQFSSESGVQMFSHF 4464 (4600)
T ss_pred EEEEEecccccccccCceeeehHHHHHHHHHHHHH--------hhccEEEEecCC-ChhhhCchhhhhcchHHHHHHHhh
Confidence 3799999999998654322 2232333333332 235888988864 4677666432211 11111111
Q ss_pred cccCCcCcHHHHHHHHHHHhcc--c----CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcH
Q 016296 79 LDIGGEMNIAAGIQVAQLALKH--R----QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKP 152 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkh--r----~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~ 152 (392)
.--.-+++ -+.+|..+.|- + .....+|-.||+.++ +-+|...|.++.+++..++|-+-.|-+-.-. .|.
T Consensus 4465 ~feqs~tn---v~~l~~~s~k~f~~a~t~~h~d~~qleiiisdg-icedhdsi~kllrra~e~kvmivfvild~v~-t~~ 4539 (4600)
T COG5271 4465 TFEQSNTN---VLALADASMKCFNYANTASHHDIRQLEIIISDG-ICEDHDSIRKLLRRAQEEKVMIVFVILDNVN-TQK 4539 (4600)
T ss_pred chhccccc---HHHHHHHHHHHHHHhhhhcccchheeEEEeecC-cccchHHHHHHHHHhhhcceEEEEEEecCCc-cch
Confidence 11111222 23333333320 0 012356667777666 5567889999999999999988877776655 555
Q ss_pred HHHHHHHHHHcC
Q 016296 153 EKLEALLAAVNN 164 (392)
Q Consensus 153 ~~l~~~~~~vn~ 164 (392)
.||.. ++|++
T Consensus 4540 sildi--~kv~y 4549 (4600)
T COG5271 4540 SILDI--KKVYY 4549 (4600)
T ss_pred hhhhh--Hhhcc
Confidence 56653 45653
No 200
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=31.39 E-value=2.4e+02 Score=26.57 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=42.5
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
|.+.|.+.-..+-.+....+.-. .....+.|+|++-||... -..-..+...++....+|.+|++|-..
T Consensus 26 I~i~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~INSpGG~-v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 26 IVIAGEINKDLSELFQEKILLLE-ALDSKKPIFVYIDSEGGD-IDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EEECCEEcHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCC-HHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 45677655554544443332211 223567799999998764 444556666777777888888877655
No 201
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=31.29 E-value=1.6e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=42.4
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC--------CChh-hHHHHHHHHHhCCceEEEEEeC
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK--------YDRK-VMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~--------~d~~-~l~~~ak~LKknnI~VdiI~fG 145 (392)
|.|.-+..+|++.|..+|+. .++-.||-+|-++-.. .|+. .+...-+.+.+.||.|.+-.-.
T Consensus 11 pYg~q~a~~A~~fA~all~~---gh~~v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~c 81 (126)
T COG1553 11 PYGTESAFSALRFAEALLEQ---GHELVRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVAC 81 (126)
T ss_pred CCccHHHHHHHHHHHHHHHc---CCeEEEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHHH
Confidence 56888899999999999975 2455666555554331 1233 4556788889999988875443
No 202
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=30.51 E-value=32 Score=27.10 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=16.6
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEE
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIV 142 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI 142 (392)
.++||++++.... ......++.++|+..+|+|+.|
T Consensus 46 ~~~Vii~~D~D~~-G~~~a~~i~~~l~~~gi~v~~v 80 (81)
T PF13662_consen 46 VKEVIIAFDNDKA-GEKAAQKIAKKLLPLGIRVTRV 80 (81)
T ss_dssp -SEEEEEEESSHH-HHHHHHHHHHHHG---------
T ss_pred CceEEEEeCcCHH-HHHHHHHHHHHHHhhccccccC
Confidence 4567777766432 2445678888899999999886
No 203
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=30.42 E-value=1.1e+02 Score=27.76 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=41.8
Q ss_pred cccCCcCcHHHHHHHHH--HHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQ--LALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~--laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+.+.|..+-..+-.+.. ..|.. +...++|.|++.||... -..-..+...++.-++.|.+++.|-..
T Consensus 19 i~l~g~I~~~~~~~~~~~L~~l~~---~~~~~~i~i~INSpGG~-v~~g~~i~~~i~~~~~~v~t~~~G~aa 86 (182)
T PF00574_consen 19 IFLNGPIDEESANRLISQLLYLEN---EDKNKPINIYINSPGGD-VDAGLAIYDAIRSSKAPVTTVVLGLAA 86 (182)
T ss_dssp EEEESSBSHHHHHHHHHHHHHHHH---HTSSSEEEEEEEECEBC-HHHHHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred EEECCccCHHHHHHHHHHHHHHhc---cCCCceEEEEEcCCCCc-cHHHHHHHHHHHhcCCCeEEEEeCccc
Confidence 34556555444433333 34533 33567899999998755 445666777777878888888887654
No 204
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=30.31 E-value=1.4e+02 Score=33.50 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=58.4
Q ss_pred eEEEEEeCCccccCCCCC-CcHHHHHHHHHHHHHHhhhcCC--CCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccc-
Q 016296 5 ATMICIDNSEWMRNGDYS-PSRLRAQADAVSLICGAKTQSN--PENTVGILTMGGKGVRVLTTPTTDLGKILACMHELD- 80 (392)
Q Consensus 5 a~~IvIDnSesMrngD~~-PtRl~aq~dav~~fv~~k~~~N--Pes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~- 80 (392)
.+.++||.|.||-..-+. -|=|.-+|.||+.|+...++.. -..+.=++||.---..|-+-.-..+..++.-|+++.
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 468899999999887776 4688899999999998765421 112222333332111122222234445556666664
Q ss_pred cCCcCcHHHHHHHHHHHhc
Q 016296 81 IGGEMNIAAGIQVAQLALK 99 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLk 99 (392)
+.|.+-+.+++--|-..|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 4566888888777766554
No 205
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.28 E-value=82 Score=32.13 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=64.0
Q ss_pred EEEEEecCCCceEEECCCCCHHHHHHhhcccccCC--cCcHHHHHHHHHHHhcccCC--CCCCcEEEEEEcCCCCCChhh
Q 016296 49 VGILTMGGKGVRVLTTPTTDLGKILACMHELDIGG--EMNIAAGIQVAQLALKHRQN--KNQRQRIIVFAGSPVKYDRKV 124 (392)
Q Consensus 49 VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G--~~sL~~gL~vA~laLkhr~~--k~~~~RIVvFvgSp~~~d~~~ 124 (392)
.-+|+++|+-|.-+ +-..+.+++..+++....= .++ ..+|.. +|+..|. |..+..+-..++.+... ..+
T Consensus 130 ~d~VvlsGSlP~g~--~~d~y~~li~~~~~~g~~vilD~S-g~~L~~---~L~~~P~lIKPN~~EL~~~~g~~~~~-~~d 202 (310)
T COG1105 130 DDIVVLSGSLPPGV--PPDAYAELIRILRQQGAKVILDTS-GEALLA---ALEAKPWLIKPNREELEALFGRELTT-LED 202 (310)
T ss_pred CCEEEEeCCCCCCC--CHHHHHHHHHHHHhcCCeEEEECC-hHHHHH---HHccCCcEEecCHHHHHHHhCCCCCC-hHH
Confidence 44588888743211 2245677777776631110 111 122222 2332221 22222244455776665 448
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCCC
Q 016296 125 MEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTGP 177 (392)
Q Consensus 125 l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g~ 177 (392)
+.+.+++|...+|..-||++|...- | .-.+++++++.+|+.+
T Consensus 203 ~i~~a~~l~~~g~~~ViVSlG~~Ga--------l---~~~~~~~~~a~~p~~~ 244 (310)
T COG1105 203 VIKAARELLAEGIENVIVSLGADGA--------L---LVTAEGVYFASPPKVQ 244 (310)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccc--------E---EEccCCeEEEeCCCcc
Confidence 8889999999999999999999872 1 1234678998877753
No 206
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.09 E-value=3.2e+02 Score=25.42 Aligned_cols=84 Identities=13% Similarity=0.240 Sum_probs=47.6
Q ss_pred CCcCcH------HHHHHHHHHHhcccCC----CCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCc
Q 016296 82 GGEMNI------AAGIQVAQLALKHRQN----KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK 151 (392)
Q Consensus 82 ~G~~sL------~~gL~vA~laLkhr~~----k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n 151 (392)
.|+..+ ...++.+...|.++.. .....|| |+.+-+.+.|.-.+.-++..|+.+|. +||-+|... .
T Consensus 49 ~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~v-v~~t~~gd~H~lG~~~v~~~l~~~G~--~vi~LG~~v-p- 123 (197)
T TIGR02370 49 DGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKV-VCGVAEGDVHDIGKNIVVTMLRANGF--DVIDLGRDV-P- 123 (197)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeE-EEEeCCCchhHHHHHHHHHHHHhCCc--EEEECCCCC-C-
Confidence 466665 5555555555544321 1223444 44455555677777777888899998 677888877 3
Q ss_pred HHHHHHHHHHHcCCCCceEEEec
Q 016296 152 PEKLEALLAAVNNNDSSHLVHVP 174 (392)
Q Consensus 152 ~~~l~~~~~~vn~~d~Sh~v~vp 174 (392)
.+.|++.+.. .+.++|.+.
T Consensus 124 ---~e~~v~~~~~-~~pd~v~lS 142 (197)
T TIGR02370 124 ---IDTVVEKVKK-EKPLMLTGS 142 (197)
T ss_pred ---HHHHHHHHHH-cCCCEEEEc
Confidence 3444444442 234454443
No 207
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.83 E-value=26 Score=38.75 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=19.6
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
|||+.++..+--..+.++|++.+..+..+.+|++|...
T Consensus 119 il~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~ 156 (707)
T PF03028_consen 119 ILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ 156 (707)
T ss_dssp EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred eEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence 56667766554445666665544233788888888765
No 208
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=29.24 E-value=1.7e+02 Score=29.90 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=43.1
Q ss_pred cccCCcCcHHHHHHHHHHHhcccC------CCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQ------NKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~------~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
++..+...|..+--.|..+|.+.. +-..+++|+|+-+| .+=-..+++.+|..+ .+.|+..+...
T Consensus 124 l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs-----ggVG~~aiQlAk~~~-~~~v~t~~s~e 193 (347)
T KOG1198|consen 124 LSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS-----GGVGTAAIQLAKHAG-AIKVVTACSKE 193 (347)
T ss_pred cChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC-----cHHHHHHHHHHHhcC-CcEEEEEcccc
Confidence 456677889999999999998875 33445556655555 233445666677788 56777777654
No 209
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=29.21 E-value=5.5e+02 Score=25.98 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.+|+|++. ...+...+.++.+++++..-.+.+|-.|... +..+.++++++..
T Consensus 234 ~vil~~~~-~~~~~~~ll~A~~~l~~~~~~~~liivG~g~-~r~~~l~~~~~~~ 285 (425)
T PRK05749 234 PVWIAAST-HEGEEELVLDAHRALLKQFPNLLLILVPRHP-ERFKEVEELLKKA 285 (425)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHHHHhCCCcEEEEcCCCh-hhHHHHHHHHHhC
Confidence 45666554 3333455677777776643334444445433 2224566666543
No 210
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=29.21 E-value=1.8e+02 Score=29.09 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCceEEEEEe-----CCCCCCcHHHHHHHHHHHcCCCCceEEEecC--CChhhhhhhhcCCcccCCC
Q 016296 126 EMIGKKLKKNSVAIDIVNF-----GEDDDGKPEKLEALLAAVNNNDSSHLVHVPT--GPNALSDVLISSPVFTADG 194 (392)
Q Consensus 126 ~~~ak~LKknnI~VdiI~f-----G~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~--g~~lLsD~l~sspi~~~~~ 194 (392)
+.+.+.++++||.|+.|++ |... .+..+.+..+.+.++.- .++-.+-+ ...-++-.|--+|.+..++
T Consensus 158 ~~~l~~a~~~Gv~~d~VNiMtmDyg~~~-~~~~mg~~a~~aa~~~~-~ql~~~~~~~s~~~~~~~ig~TpMiG~nD 231 (294)
T cd06543 158 LNVLEAAAANGVDLDTVNIMTMDYGSSA-GSQDMGAAAISAAESLH-DQLKDLYPKLSDAELWAMIGVTPMIGVND 231 (294)
T ss_pred HHHHHHHHHcCCCcceeeeeeecCCCCC-CcccHHHHHHHHHHHHH-HHHHHHccCCCHHHHHHHccccccccccC
Confidence 4678888999999999885 4431 11235555555544210 11111111 1123455565666665444
No 211
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=29.15 E-value=59 Score=29.26 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCC-hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 110 IIVFAGSPVKYD-RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 110 IVvFvgSp~~~d-~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
-||+.||+.... -.....+++.+.+.+++|--|+||-.. ++.+|-..+
T Consensus 45 ~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~-----la~~~G~~v 93 (192)
T PF00117_consen 45 GIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQI-----LAHALGGKV 93 (192)
T ss_dssp EEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHH-----HHHHTTHEE
T ss_pred EEEECCcCCccccccccccccccccccceEEEEEeehhhh-----hHHhcCCcc
Confidence 577789988864 678889999999999999999999766 666654433
No 212
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=29.14 E-value=2.4e+02 Score=24.20 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-Ch--------hhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHH
Q 016296 87 IAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-DR--------KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEA 157 (392)
Q Consensus 87 L~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d~--------~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~ 157 (392)
..++..++....++ +..+-+++-|++.+... .+ +++..+.+.+++++|.--+|.+-... .+.+++
T Consensus 86 ~~~~~~~~~~l~~~---~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~---~~~i~~ 159 (175)
T PF13727_consen 86 GGAGRELAEALRSN---PRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSE---EEQIKR 159 (175)
T ss_dssp SHHHHHHHHHHHH-----SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS----HHHHHH
T ss_pred echHHHHHHHHHhh---hhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccC---HHHHHH
Confidence 34455555544333 34666788888665432 22 46678888889999988888876544 467888
Q ss_pred HHHHHcCCCCceEEEec
Q 016296 158 LLAAVNNNDSSHLVHVP 174 (392)
Q Consensus 158 ~~~~vn~~d~Sh~v~vp 174 (392)
+++.... .+.++-.||
T Consensus 160 ii~~~~~-~~v~v~~vP 175 (175)
T PF13727_consen 160 IIEELEN-HGVRVRVVP 175 (175)
T ss_dssp HHHHHHT-TT-EEEE--
T ss_pred HHHHHHh-CCCEEEEeC
Confidence 8887763 455555554
No 213
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.11 E-value=21 Score=37.60 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHcccCCCCC
Q 016296 324 DEDKELALALQMSMQDDTK 342 (392)
Q Consensus 324 ~ee~~ia~A~~ms~~~~~~ 342 (392)
.|||+|++||+||+.+.+.
T Consensus 164 ~EeEdiaKAi~lSL~E~~~ 182 (462)
T KOG2199|consen 164 QEEEDIAKAIELSLKEQEK 182 (462)
T ss_pred ccHHHHHHHHHhhHHHHhh
Confidence 5677888888888865433
No 214
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=29.10 E-value=1.1e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=24.7
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
+||.|.+ .+.++.+.++.+.|.++||.|.-+.
T Consensus 2 ~ri~v~v----~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 2 KQLSVFL----ENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred EEEEEEE----cCCCChHHHHHHHHHHCCCCEEEEE
Confidence 4666653 4468899999999999999885444
No 215
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=29.05 E-value=3.9e+02 Score=26.80 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC----CChhhHHHHHHHHHh-CCceEEEEEeCCCCCCcHHHHHHHH
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK----YDRKVMEMIGKKLKK-NSVAIDIVNFGEDDDGKPEKLEALL 159 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~----~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~~~n~~~l~~~~ 159 (392)
.++...+......|+. ..+++||+++---. .....+..+.+.+.. .+.+|.+|++|.... ....+-
T Consensus 120 ~~~~~~~~~~~~~l~~-----~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~----~~~~l~ 190 (394)
T PRK00411 120 LSFDELFDKIAEYLDE-----RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT----FLYILD 190 (394)
T ss_pred CCHHHHHHHHHHHHHh-----cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc----hhhhcC
Confidence 3444444444444432 23457777755322 123456666654432 344789999998762 222232
Q ss_pred HHHcCCCCceEEEecC-CChhhhhhhh
Q 016296 160 AAVNNNDSSHLVHVPT-GPNALSDVLI 185 (392)
Q Consensus 160 ~~vn~~d~Sh~v~vp~-g~~lLsD~l~ 185 (392)
..+.+.-..+.+..+| ...-+.++|.
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 3333222234566665 3334555553
No 216
>PRK04155 chaperone protein HchA; Provisional
Probab=29.05 E-value=2.5e+02 Score=28.08 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 121 DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
.+.++..-...|++.|+.|+|++...
T Consensus 75 ~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 75 HPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45677777999999999999999843
No 217
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.00 E-value=2.8e+02 Score=29.84 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
.|+++++|... .++..-+++.|+..|..+-|.=+=.. .|++.++.|+.+..+
T Consensus 268 ~V~Ilcgpgnn-ggdg~v~gRHL~~~G~~~vi~~pk~s--~~~~~~~~L~~q~~~ 319 (453)
T KOG2585|consen 268 LVAILCGPGNN-GGDGLVCGRHLAQHGYTPVIYYPKRS--LNVDLYKSLVKQCDG 319 (453)
T ss_pred eEEEEeCCCCc-cchhHHHHHHHHHcCceeEEEeecCc--cchhHHHHHHHHhcC
Confidence 57777887665 44444599999999976655544443 467899999998864
No 218
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.96 E-value=2.1e+02 Score=27.12 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 109 RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..|+|+|..... +-..+.++.+++++ ++++.+||-|...
T Consensus 194 ~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~ 233 (363)
T cd04955 194 RYYLLVGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHN 233 (363)
T ss_pred cEEEEEecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCc
Confidence 457788875433 34445566666554 6888888888554
No 219
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=28.96 E-value=99 Score=31.01 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=61.3
Q ss_pred CccccCC-CCCCcH----HHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcc---cccCCc
Q 016296 13 SEWMRNG-DYSPSR----LRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHE---LDIGGE 84 (392)
Q Consensus 13 SesMrng-D~~PtR----l~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~---i~~~G~ 84 (392)
..|+.+. .+.|.. .....+.+..++..|-+. .+|-- -.|+=.+-.+.+. -..++. ...-|.
T Consensus 87 P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~---g~i~~-------WDVvNE~i~~~~~-~~~~r~~~~~~~lG~ 155 (320)
T PF00331_consen 87 PDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDK---GRIYA-------WDVVNEAIDDDGN-PGGLRDSPWYDALGP 155 (320)
T ss_dssp -HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTT---TTESE-------EEEEES-B-TTSS-SSSBCTSHHHHHHTT
T ss_pred cceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccc---cceEE-------EEEeeecccCCCc-cccccCChhhhcccH
Confidence 4577776 667765 334455677777766532 12211 1233333322220 000000 011245
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCC-CCCC--hhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSP-VKYD--RKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp-~~~d--~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
.-+..+++.|+.+... +.+|+--= +... ...++++++.|++.||+||.|||=..
T Consensus 156 ~yi~~aF~~A~~~~P~---------a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H 212 (320)
T PF00331_consen 156 DYIADAFRAAREADPN---------AKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSH 212 (320)
T ss_dssp CHHHHHHHHHHHHHTT---------SEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEE
T ss_pred hHHHHHHHHHHHhCCC---------cEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhc
Confidence 5677799999888642 23555221 2222 23588999999999999999998653
No 220
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=28.92 E-value=2.3e+02 Score=29.04 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 106 QRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
....+|+|+|..... ....+.++++++++.++++-++|-|... -.+.++.+.+.
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~--~~~~~~~~~~~ 348 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE--YEEALRELAAR 348 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH--HHHHHHHHHHh
Confidence 345678898886543 4556788889998888888787777432 23456666544
No 221
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.67 E-value=6.2e+02 Score=25.48 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
+++++.-+....+..=.....|.+++-||.+.++-|.+.. ... -+...++.+|.+.. .-+|-.|--+++-.+.+++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~-el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~ 109 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEAT-TQA-DLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVID 109 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3444443333333444556789999999999999999887 444 44455678887654 3455555444544444443
No 222
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.58 E-value=81 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
|+|+.+|....++.-...+++.++..++.|+++.+..-
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~ 38 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADA 38 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 35666887555666677888899999999999887653
No 223
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=28.42 E-value=1.4e+02 Score=22.22 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
+|-++|......++-+.++-+.|.++||+|.-++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 5777888888889989999999999999996544
No 224
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=28.20 E-value=4.8e+02 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceE
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAI 139 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~V 139 (392)
.+|+|+++....+++.+.++.+.+.++++.+
T Consensus 95 ~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 125 (243)
T PLN02726 95 DFVVIMDADLSHHPKYLPSFIKKQRETGADI 125 (243)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 4899999988889999999999988777644
No 225
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=28.19 E-value=1.8e+02 Score=23.42 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhCC---ceEEEEEeCCCC
Q 016296 123 KVMEMIGKKLKKNS---VAIDIVNFGEDD 148 (392)
Q Consensus 123 ~~l~~~ak~LKknn---I~VdiI~fG~e~ 148 (392)
.....++..+...+ ..|.|+-+|+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~~~g~gv 46 (122)
T PF02635_consen 18 KIALRLANAAAAMGDYGHDVVVFFHGDGV 46 (122)
T ss_dssp HHHHHHHHHHHHTTHTTSEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEEchHH
Confidence 44555566666666 677777766644
No 226
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=27.96 E-value=1.7e+02 Score=25.13 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=8.9
Q ss_pred CCceEEEEEeCCCC
Q 016296 135 NSVAIDIVNFGEDD 148 (392)
Q Consensus 135 nnI~VdiI~fG~e~ 148 (392)
.+-++.||.||...
T Consensus 33 ~~d~fnii~f~~~~ 46 (155)
T PF13768_consen 33 PGDRFNIIAFGSSV 46 (155)
T ss_pred CCCEEEEEEeCCEe
Confidence 34577777777653
No 227
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=27.91 E-value=1.4e+02 Score=32.01 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 109 RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
..|+|+|..... .-..+.++.+++++. ++++.|+|-|.+. +.|+.+++..+
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~----~~l~~~i~~~~ 373 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK----QKLQKIINENQ 373 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH----HHHHHHHHHcC
Confidence 367888876543 455567777777654 6788888877654 47888887654
No 228
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=27.90 E-value=1.2e+02 Score=23.54 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=30.6
Q ss_pred ccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 100 HRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 100 hr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
.|+.+.....+++|+......+..++.++.+.|++.-..+.++|
T Consensus 34 s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~~~~~lG 77 (80)
T cd04905 34 SRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTEFVKVLG 77 (80)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeEEEee
Confidence 45544445557777755444457788899999999877777776
No 229
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.58 E-value=1.1e+02 Score=25.85 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.|+|+..+.. -....++++.|+++||.+.+|.+-.-.--..+.+..++...
T Consensus 11 di~iia~G~~---~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~ 61 (124)
T PF02780_consen 11 DITIIAYGSM---VEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT 61 (124)
T ss_dssp SEEEEEETTH---HHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH
T ss_pred CEEEEeehHH---HHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh
Confidence 4555554432 45688999999999999999998764323445555544443
No 230
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=27.52 E-value=98 Score=28.58 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHh-CCceEEEEEeCCCC
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKK-NSVAIDIVNFGEDD 148 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKk-nnI~VdiI~fG~e~ 148 (392)
+|+|+.+|+...+.+-+..+++.+++ .|+.|.++.+.+..
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~ 43 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETV 43 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccC
Confidence 58888899865556666777888887 99999999997543
No 231
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=27.40 E-value=2.3e+02 Score=25.71 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 109 RIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 109 RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
+|-|| ||-... ..+...++++.|.++|+ .+|+ |.... +..+..+.+-..++--+-++|.
T Consensus 3 ~I~V~-gss~~~~~~~~~A~~lg~~La~~g~--~lv~-Gg~~G----lM~a~a~ga~~~gg~viGVlp~ 63 (159)
T TIGR00725 3 QIGVI-GSSNKSEELYEIAYRLGKELAKKGH--ILIN-GGRTG----VMEAVSKGAREAGGLVVGILPD 63 (159)
T ss_pred EEEEE-eCCCCChHHHHHHHHHHHHHHHCCC--EEEc-CCchh----HHHHHHHHHHHCCCeEEEECCh
Confidence 34445 443322 23346788999999997 4555 66555 8888887776444434444443
No 232
>PRK14974 cell division protein FtsY; Provisional
Probab=27.36 E-value=3.8e+02 Score=27.41 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
+.++|+|+|.+...=.-.+.+++..|++++.+|-+|.--.--..-.+-|+.+++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 35789999977665444578899999999988877652211101134566666554
No 233
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.34 E-value=66 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=19.9
Q ss_pred CChhhHHHHHHHHHhCCceEEEEEeC
Q 016296 120 YDRKVMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 120 ~d~~~l~~~ak~LKknnI~VdiI~fG 145 (392)
.......+++++|++.|++|.+.-.+
T Consensus 12 ~~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 12 GALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 34456889999999999999875543
No 234
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.77 E-value=2.8e+02 Score=23.15 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
..++.++++.+|+.|++|-.|. ... -+..+++.. +.+.+.+|.+
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT--~~~-----~l~~~~~~~----~~~~~~~p~~ 99 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAIT--SGG-----KLLEMAREH----GVPVIIIPKG 99 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEe--CCc-----hHHHHHHHc----CCcEEECCCC
Confidence 5678899999999998554444 322 256666433 4577888775
No 235
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.76 E-value=1.4e+02 Score=28.14 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
-|.|.|+.-...++-+..+++.+|+.|+++.+..=|... ...+.++.+..
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~-~~~~~~~~ll~ 122 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR-RYDPVIDELLD 122 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC-cchHHHHHHHH
Confidence 477888766666766789999999999987666555533 12356666654
No 236
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=26.60 E-value=1.1e+02 Score=29.04 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=25.6
Q ss_pred EEEEEEcCCC-CCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 109 RIIVFAGSPV-KYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 109 RIVvFvgSp~-~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
||++|..++. ...+.....+++.|++.|+.|.++.+...
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 5666665554 23456677777777777777777776543
No 237
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=26.55 E-value=1.4e+02 Score=36.08 Aligned_cols=143 Identities=18% Similarity=0.259 Sum_probs=85.6
Q ss_pred EEEEEeCCccccCCCCCCc-HHHHHHH-HHHHHHHhhhcCCCCCcEEEEEecC-----CCceEEECC------------C
Q 016296 6 TMICIDNSEWMRNGDYSPS-RLRAQAD-AVSLICGAKTQSNPENTVGILTMGG-----KGVRVLTTP------------T 66 (392)
Q Consensus 6 ~~IvIDnSesMrngD~~Pt-Rl~aq~d-av~~fv~~k~~~NPes~VGLvtmag-----~~~~vlvtl------------T 66 (392)
++|.|-+|.=|.+=|..=. =|+.+.+ .+-.++..+-+++-.-.|-||.+.. +++.-+.+. -
T Consensus 294 vliFIQMs~EMW~Fde~GdlyfeKaIngFLpdLF~KWKe~~chH~VsIiLfsr~~ys~~gvdd~~~~~~~~~~Dh~gr~y 373 (1701)
T KOG3572|consen 294 VLIFIQMSSEMWQFDEQGDLYFEKAINGFLPDLFLKWKEQSCHHYVSIILFSRMWYSIGGVDDAAKRFMKGACDHRGRYY 373 (1701)
T ss_pred EEeeeeechHhhcCcchhHHHHHHHHHhHHHHHHHHHHhcCCceEEEEEEEEeeecccCCchhccchhccccccccCCcH
Confidence 5677888888887654433 3443332 4455556666788888888887753 222111111 0
Q ss_pred CCH-------------HHHHHhhccc------------------ccCC------cCcHHHHHHHHHHHhc----ccCCCC
Q 016296 67 TDL-------------GKILACMHEL------------------DIGG------EMNIAAGIQVAQLALK----HRQNKN 105 (392)
Q Consensus 67 ~D~-------------~kil~~L~~i------------------~~~G------~~sL~~gL~vA~laLk----hr~~k~ 105 (392)
.|+ ..++..|.+. .+.| .-+|...|.+|.-.|. .|.=.+
T Consensus 374 qDFyrvVVqNes~edW~d~l~tlk~ef~~~r~vlvrk~~dEg~~~~qGr~Stsa~gNfLEvVNms~n~F~~~yidrdf~r 453 (1701)
T KOG3572|consen 374 QDFYRVVVQNESYEDWADKLLTLKNEFCSKRSVLVRKKLDEGLPQVQGRVSTSADGNFLEVVNMSMNSFSMYYIDRDFER 453 (1701)
T ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcccccccccccccchHHhhhhhhhhccchhhhccccc
Confidence 111 1122222210 1223 5678888888887763 232344
Q ss_pred CCcEEEEEE-cCCC-CCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 106 QRQRIIVFA-GSPV-KYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 106 ~~~RIVvFv-gSp~-~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+++-|||+. |+-+ +.|..-+.-+.++|-.++|.+|+|++|+.-
T Consensus 454 Tgq~iiiVTPG~GvfeVDr~Ll~LTkqrlid~gigmDlVCLgeqP 498 (1701)
T KOG3572|consen 454 TGQQIIIVTPGNGVFEVDRDLLSLTKQRLIDMGIGMDLVCLGEQP 498 (1701)
T ss_pred cceEEEEEcCCCceeeecHHHHHHhhhHhhhcccceeEEEccCCc
Confidence 666666665 3322 347888888899999999999999999853
No 238
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.47 E-value=1.9e+02 Score=29.54 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=61.0
Q ss_pred EEECCCCCHHHHHH-hhcc-cccCCcCcHHHHHHHHH--HHhcccCCCCCCcEEEEEEcCCCCC---ChhhHH----HHH
Q 016296 61 VLTTPTTDLGKILA-CMHE-LDIGGEMNIAAGIQVAQ--LALKHRQNKNQRQRIIVFAGSPVKY---DRKVME----MIG 129 (392)
Q Consensus 61 vlvtlT~D~~kil~-~L~~-i~~~G~~sL~~gL~vA~--laLkhr~~k~~~~RIVvFvgSp~~~---d~~~l~----~~a 129 (392)
+++.|-.|+...++ .-++ +.+.|.++=.+.-..|- .++||+- +..++|+-||||++... .++..+ -+.
T Consensus 112 lvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~ 190 (329)
T COG3660 112 LVIVPYHDWREELSDQGPNILPINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLV 190 (329)
T ss_pred EEeccchhhhhhhhccCCceeeccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHH
Confidence 34445556555433 1233 46677776666665554 4678874 67999999999998863 344333 345
Q ss_pred HHHHhCCceEEEEEeCCCCCCcHHHHHHHHHH
Q 016296 130 KKLKKNSVAIDIVNFGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 130 k~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~ 161 (392)
|.|.+.|+++ +|+|+-... +..+.++.+
T Consensus 191 k~l~~~g~~~-lisfSRRTp---~~~~s~l~~ 218 (329)
T COG3660 191 KILENQGGSF-LISFSRRTP---DTVKSILKN 218 (329)
T ss_pred HHHHhCCceE-EEEeecCCc---HHHHHHHHh
Confidence 6667788886 568887653 566666653
No 239
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=26.33 E-value=1.1e+02 Score=31.21 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=8.9
Q ss_pred CcHHHHHHHHHHHc
Q 016296 150 GKPEKLEALLAAVN 163 (392)
Q Consensus 150 ~n~~~l~~~~~~vn 163 (392)
.++..+++++..+.
T Consensus 217 GKtt~~~~l~~~l~ 230 (366)
T PRK14489 217 GKTTLLEKLIPELI 230 (366)
T ss_pred CHHHHHHHHHHHHH
Confidence 35666677776664
No 240
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=26.31 E-value=1.9e+02 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHhCCceEEEEEeCCCCCCc---HHHHHHHHH
Q 016296 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGK---PEKLEALLA 160 (392)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n---~~~l~~~~~ 160 (392)
|+..+.+.++.++++||..-.|+|==.. .| ..+.+.+++
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~-~np~hE~~v~eii~ 173 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSY-RNPEHEQRVAEIIR 173 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCC-CCHHHHHHHHHHHH
Confidence 7889999999999999998888876544 34 334444443
No 241
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.25 E-value=6.9e+02 Score=25.23 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=47.6
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
.||.+|. ...+..=.....|.+++-||.+..+-|.+.. ... -|...++.+|.++. .-+|-.|--+++-.+.+++
T Consensus 42 aii~vg~-d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~-el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 42 ATILVGD-DPASKMYVRLKHKACERVGIRAEDQFLPADT-TQE-ELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred EEEEECC-CcchHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 3444444 3444445567789999999999999999887 444 45566689997654 4555556544544444443
No 242
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.16 E-value=3.2e+02 Score=25.33 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+.|| ||.+-+.+.|.-.+.-++..|+.+|..| |.+|...
T Consensus 82 ~~~v-l~~~~~gd~H~lG~~~v~~~l~~~G~~v--i~lG~~~ 120 (201)
T cd02070 82 KGKV-VIGTVEGDIHDIGKNLVATMLEANGFEV--IDLGRDV 120 (201)
T ss_pred CCeE-EEEecCCccchHHHHHHHHHHHHCCCEE--EECCCCC
Confidence 4454 4445556667777777788899999865 8888776
No 243
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=26.01 E-value=3.2e+02 Score=26.39 Aligned_cols=57 Identities=18% Similarity=0.062 Sum_probs=33.7
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC--CceEEEEEeCCCCCC--cHHHHHHHHHHHc
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN--SVAIDIVNFGEDDDG--KPEKLEALLAAVN 163 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn--nI~VdiI~fG~e~~~--n~~~l~~~~~~vn 163 (392)
.+.+|+|+|..... +...+.++++++++. ++.+-+||=|..... ....++.+++..+
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 280 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG 280 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC
Confidence 34578888876543 566788888888875 456666654443210 0123566666544
No 244
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=25.96 E-value=1.6e+02 Score=30.19 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 123 ~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
....++|+.|+++||++-||.+.+-.---...+.+..+++ .++|++-.
T Consensus 205 ~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t-----~~IvT~Ee 252 (312)
T COG3958 205 AEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARET-----GRIVTAEE 252 (312)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhc-----CcEEEEec
Confidence 4578999999999999999999996533345666666555 36777754
No 245
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.91 E-value=3.1e+02 Score=27.33 Aligned_cols=38 Identities=8% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeC
Q 016296 104 KNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 104 k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (392)
...++||+||+++..+ ++..+++..+...+..+|+.+-
T Consensus 86 ~~~~~ri~vl~Sg~gs----nl~al~~~~~~~~~~~~i~~vi 123 (286)
T PRK06027 86 SAERKRVVILVSKEDH----CLGDLLWRWRSGELPVEIAAVI 123 (286)
T ss_pred cccCcEEEEEEcCCCC----CHHHHHHHHHcCCCCcEEEEEE
Confidence 3455666666555322 2444444444444444444443
No 246
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=25.90 E-value=2.7e+02 Score=22.07 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=30.2
Q ss_pred cCCCC-CChhhHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 115 GSPVK-YDRKVMEMIGKKLKKNS--VAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 115 gSp~~-~d~~~l~~~ak~LKknn--I~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
||+.. .-...+.++++++++.. ..| .++|-.... +-+...++.+...+-.+++.+|-.
T Consensus 8 Gs~~~s~~~~~~~~~~~~l~~~~~~~~v-~~a~~~~~~---P~i~~~l~~l~~~g~~~vvvvPl~ 68 (101)
T cd03409 8 GSPYKDPYKKDIEAQAHNLAESLPDFPY-YVGFQSGLG---PDTEEAIRELAEEGYQRVVIVPLA 68 (101)
T ss_pred CCCCCccHHHHHHHHHHHHHHHCCCCCE-EEEEECCCC---CCHHHHHHHHHHcCCCeEEEEeCc
Confidence 56544 23446777788886643 333 355555411 123333444433344678888764
No 247
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=25.62 E-value=99 Score=30.30 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+||++++++- ..+......+++.|++.|..|.+|+++.
T Consensus 2 ~~i~i~~~g~-gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGT-GGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcc-hHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 3555554432 2334445577777777777777776644
No 248
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=25.49 E-value=1.6e+02 Score=24.00 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=39.6
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-C---hhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-D---RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d---~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.+.|...+.++=.+-...+.... +...+.+| +=.+.... | -+.+..+.+++++.|+.+.++|+-...
T Consensus 15 ~l~G~L~~~~a~~~~~~l~~~~~-~~~~~~vv-lDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 15 PLIGDLDDERAEQLQERLLEAIS-RRRARGVI-IDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eeeeeECHHHHHHHHHHHHHHHH-HcCCCEEE-EECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 45677777776555433322221 12333344 33333332 3 345778899999999999999977554
No 249
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=25.41 E-value=1.2e+02 Score=27.81 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
++|+-|+|...+.=---+.+++++|+..|++|.+|-=--.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4588888886655333478999999999999999965443
No 250
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=25.32 E-value=7.3e+02 Score=25.20 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCC-ChhhHHHHHHHHHhCC--ceEEEEEeCCCCCCcHHHHHHHHH
Q 016296 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKNS--VAIDIVNFGEDDDGKPEKLEALLA 160 (392)
Q Consensus 109 RIVvFvgSp~~~-d~~~l~~~ak~LKknn--I~VdiI~fG~e~~~n~~~l~~~~~ 160 (392)
..|+++|..... .-..+.++++++++.+ +.+..+.+|... ..+.++.+++
T Consensus 231 ~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~ 283 (407)
T cd04946 231 LRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAE 283 (407)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHH
Confidence 346666654433 4556777788887764 455555555533 2346777765
No 251
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=25.17 E-value=6.7e+02 Score=26.78 Aligned_cols=158 Identities=12% Similarity=0.164 Sum_probs=76.3
Q ss_pred EEEEeCCccccC---CCCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhh---ccc-
Q 016296 7 MICIDNSEWMRN---GDYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACM---HEL- 79 (392)
Q Consensus 7 ~IvIDnSesMrn---gD~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L---~~i- 79 (392)
||.+|.|....- +-+...-+.+.+.-+..+.+...+......+|.+.+-... . -.++.++...+ +.+
T Consensus 2 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lg~~~lp~~~----~--~~~~~~~~~~~~~~~~vV 75 (446)
T PRK00973 2 MLKFDFSNVFEPNIGGGISIEDIESVKEKITSAVENLMEKEPNGELGFLELPYDR----S--LDSYEELKEWSKNFDNVV 75 (446)
T ss_pred eeEEehhhccccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCcCCcccCcccc----C--HHHHHHHHHHhhcCCEEE
Confidence 788887754433 3344444544333333444443333333334433332110 0 01333333332 232
Q ss_pred ccC-CcCcHHHHHHHHHHHhcccCC-CC----CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016296 80 DIG-GEMNIAAGIQVAQLALKHRQN-KN----QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (392)
Q Consensus 80 ~~~-G~~sL~~gL~vA~laLkhr~~-k~----~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (392)
-++ |+.+| |-++...+|++... .. .....| |+.+ +.|+..+..+.++++-++..|-||+-.-...+...
T Consensus 76 viGIGGS~L--G~~al~~al~~~~~~~~~~~~~~~~~l-~~~~--n~dp~~~~~~l~~l~~~~Tl~iviSKSGtT~ET~~ 150 (446)
T PRK00973 76 VLGIGGSAL--GNLALHYALNPLNWNELSKEERNGPRV-FVLD--NVDPEKTASILDVIDLEKTLFNVISKSGNTAETLA 150 (446)
T ss_pred EEcCCchhH--HHHHHHHHHhhhccccccccccCCceE-EEeC--CCCHHHHHHHHHhCCcccEEEEEEeCCCCCHHHHH
Confidence 344 55555 55666667765310 00 011123 4443 33688898999888878888888887654433333
Q ss_pred HHHHHHHHH---cCCCCceEEEecC
Q 016296 154 KLEALLAAV---NNNDSSHLVHVPT 175 (392)
Q Consensus 154 ~l~~~~~~v---n~~d~Sh~v~vp~ 175 (392)
-.+.|.+.+ ......|+|+|-.
T Consensus 151 ~f~~~~~~l~~~g~~~~~~~vaiTd 175 (446)
T PRK00973 151 NYLIIRGILEKLGLDPKKHLVFTTD 175 (446)
T ss_pred HHHHHHHHHHhcCccccceEEEEcC
Confidence 233322222 1123558777755
No 252
>PRK00170 azoreductase; Reviewed
Probab=25.06 E-value=1.5e+02 Score=26.90 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCC-C--hhhHHHHHHHHHhC--CceEEEEEeCCCC
Q 016296 108 QRIIVFAGSPVKY-D--RKVMEMIGKKLKKN--SVAIDIVNFGEDD 148 (392)
Q Consensus 108 ~RIVvFvgSp~~~-d--~~~l~~~ak~LKkn--nI~VdiI~fG~e~ 148 (392)
+||+++.|||... . ..-+...++.+++. +..|.+|.+....
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~ 47 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEP 47 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 4689999999753 2 22233557777887 8999999887643
No 253
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=25.02 E-value=3.2e+02 Score=24.36 Aligned_cols=76 Identities=24% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEecCCCceEEECCCCCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHH
Q 016296 50 GILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIG 129 (392)
Q Consensus 50 GLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~a 129 (392)
+||..+|.+ ..+-++|.+..|-+- .++|.+-|...|+.. .. ..-++|+|+++. ....+.+..
T Consensus 1 aiIlaaG~g-~R~~~~t~~~pK~ll-----~v~g~pli~~~l~~l----~~----~g~~~i~vv~~~----~~~~i~~~~ 62 (217)
T cd04181 1 AVILAAGKG-TRLRPLTDTRPKPLL-----PIAGKPILEYIIERL----AR----AGIDEIILVVGY----LGEQIEEYF 62 (217)
T ss_pred CEEecCCcc-ccccccccCCCcccc-----EECCeeHHHHHHHHH----HH----CCCCEEEEEecc----CHHHHHHHH
Confidence 467777776 778888876655432 335666655555543 22 123456666543 123343333
Q ss_pred HHHHhCCceEEEEE
Q 016296 130 KKLKKNSVAIDIVN 143 (392)
Q Consensus 130 k~LKknnI~VdiI~ 143 (392)
+..+..++.|.++.
T Consensus 63 ~~~~~~~~~i~~~~ 76 (217)
T cd04181 63 GDGSKFGVNIEYVV 76 (217)
T ss_pred cChhhcCceEEEEe
Confidence 33322456666554
No 254
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=24.87 E-value=3.3e+02 Score=25.74 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHhhcc---cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 72 ILACMHE---LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 72 il~~L~~---i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+.+.|-+ |-++|..+-..+=++....|... ..+..+.|.+++-||... -..-..+-..++..+..|.+|++|-..
T Consensus 23 ~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~-~~~~~~~I~l~INSpGG~-v~~g~aIyd~m~~~~~~V~Tv~~G~Aa 100 (200)
T CHL00028 23 LYNRLYRERLLFLGQEVDDEIANQLIGLMVYLS-IEDDTKDLYLFINSPGGS-VISGLAIYDTMQFVKPDVHTICLGLAA 100 (200)
T ss_pred HHHHHhcCCEEEECCeecHHHHHHHHHHHHHHh-ccCCCCCEEEEEeCCCcc-hhhHHHHHHHHHhcCCCEEEEEEEehH
Confidence 4444433 56677655555544444333321 234567899999998865 223345555666777888888888655
No 255
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=2.9e+02 Score=26.79 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=47.4
Q ss_pred cCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 84 EMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 84 ~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
+-....||.+-...||+- ..+++|++.+.++.....--..+-++||..+|++.+...=..++ .|+.+
T Consensus 109 ~E~t~~Al~lil~~lk~~----~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~----eLk~~ 175 (211)
T COG2454 109 NEKTDKALDLLLEFLKDV----EPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADF----ELKEL 175 (211)
T ss_pred hhHHHHHHHHHHHHHHHc----CCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCH----HHHhc
Confidence 345678999999999884 34556667788776544444566778999999988887766664 55544
No 256
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=24.67 E-value=82 Score=29.77 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=32.2
Q ss_pred EEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHH
Q 016296 110 IIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEAL 158 (392)
Q Consensus 110 IVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~ 158 (392)
-|||.|+|... +......+++++.+.+++|-=|+||-.. ++.+|
T Consensus 49 gliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Ql-----la~a~ 93 (214)
T PRK07765 49 GVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQA-----IGVAF 93 (214)
T ss_pred EEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHH-----HHHHh
Confidence 37778888653 2233457899999999999999999765 55555
No 257
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.59 E-value=7.3e+02 Score=24.96 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
.+|.+|. ...+..=.....|.+++-||.+..+-|.+.. ... -+.+.++.+|.++. .-+|-.|--+++-...++.
T Consensus 35 a~I~vg~-d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~-el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~ 110 (282)
T PRK14180 35 VAIIVGN-DPASKTYVASKEKACAQVGIDSQVITLPEHT-TES-ELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 110 (282)
T ss_pred EEEEeCC-CHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 3444443 3333333456788999999999999999876 333 45566689987654 4555556444443334433
No 258
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.58 E-value=7.4e+02 Score=24.99 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
+++++.-++...+..=.....|.+++-||.+..+-|.+.. ...+.+ ..++.+|.++. .-+|-.|--+|+-.+.++.
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~-~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~ 110 (284)
T PRK14170 33 GLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENV-TEEKLL-SVVEELNEDKTIHGILVQLPLPEHISEEKVID 110 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHHH-HHHHHHhCCCCCCeEEEecCCCCCCCHHHHHh
Confidence 3444444433333334556788999999999999999887 444444 56678887654 4555556544554444433
No 259
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=24.55 E-value=2.1e+02 Score=28.26 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=32.0
Q ss_pred cEEEEEEcCCCCCChh---hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcC
Q 016296 108 QRIIVFAGSPVKYDRK---VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNN 164 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~---~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~ 164 (392)
...|+|+|.......+ .+.+++.++++ ++++.+||-|... +.|+.+++..+-
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~~~----~~l~~~~~~~~l 234 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGSDF----EKCKAYSRELGI 234 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCccH----HHHHHHHHHcCC
Confidence 3467788874322233 44555555543 6888888877543 578888877653
No 260
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=24.42 E-value=5e+02 Score=27.45 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEEC--C---------------CCCHHHHHHhhccc---------
Q 016296 26 LRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTT--P---------------TTDLGKILACMHEL--------- 79 (392)
Q Consensus 26 l~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvt--l---------------T~D~~kil~~L~~i--------- 79 (392)
++.++.-+..+++.-.-+--.+.|-+|.=+|.+-.+++. | .+.+..=.-+|..|
T Consensus 29 ~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~ 108 (408)
T KOG2228|consen 29 VQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELN 108 (408)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHh
Confidence 344455566666655555556777777777776555542 1 11111100011111
Q ss_pred c-cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC---C--hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHH
Q 016296 80 D-IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY---D--RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPE 153 (392)
Q Consensus 80 ~-~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~---d--~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~ 153 (392)
. ..-..+|..-+.--+.+|||+. + +.+--|+||--.... + .--++.+-........+|-|||.-+.-.
T Consensus 109 ~~~k~~gsfte~l~~lL~~L~~~~-~-~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld---- 182 (408)
T KOG2228|consen 109 RIVKSFGSFTENLSKLLEALKKGD-E-TTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD---- 182 (408)
T ss_pred hhheeecccchhHHHHHHHHhcCC-C-CCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc----
Confidence 0 0112344445555567888863 3 333346777644431 1 2236788888889999999999999884
Q ss_pred HHHHHHHHHcCCCCceEEEecCCChhhhhhh
Q 016296 154 KLEALLAAVNNNDSSHLVHVPTGPNALSDVL 184 (392)
Q Consensus 154 ~l~~~~~~vn~~d~Sh~v~vp~g~~lLsD~l 184 (392)
+++.+=+.|.+ -.||.++--+++--|.|.+
T Consensus 183 ~lE~LEKRVKS-RFshr~I~m~~~~~l~~yv 212 (408)
T KOG2228|consen 183 ILELLEKRVKS-RFSHRVIFMLPSLPLGDYV 212 (408)
T ss_pred HHHHHHHHHHh-hcccceeeccCCCChHHHH
Confidence 88888778874 6788854433332255554
No 261
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.30 E-value=2.7e+02 Score=26.30 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=46.1
Q ss_pred ccCCcCcHHHHHHHHHH------HhcccCCCCCCc-EEEEEEcCCCCCC--hhhHHHHHHHHHhCCceEEEEEeCCCCC
Q 016296 80 DIGGEMNIAAGIQVAQL------ALKHRQNKNQRQ-RIIVFAGSPVKYD--RKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~l------aLkhr~~k~~~~-RIVvFvgSp~~~d--~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (392)
...|..++-..|.-+.. .|++++.+..+. +||++++-..+-. ..-+..++..+.+..-+|.++.|++...
T Consensus 23 ~~~~~lD~rrTir~~~r~~g~~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~s~~~l~~~~~l~~~~~~~~~f~F~~~l~ 101 (222)
T PF05762_consen 23 RRRGRLDLRRTIRASLRTGGEPLRLVRRRRRPRKPRRLVVLCDVSGSMAGYSEFMLAFLYALQRQFRRVRVFVFSTRLT 101 (222)
T ss_pred CCCCCCCHHHHHHHHHhcCCCcceeeccccccCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeehh
Confidence 44567777777776652 344454233444 7888886555542 3456677777887777999999999773
No 262
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.29 E-value=7.6e+02 Score=25.04 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
++.++.-++...+..=.....|.+++-||.+.++-|.+.. ... -|...++.+|.++. .-+|-.|--.++-.+.++.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~-el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~ 110 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDA-PAE-ELYDTIDELNADEDVHGILVQMPVPDHVDDREVLR 110 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 3444443333333333456788999999999999999887 444 45566689997664 4455555433444444443
No 263
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.21 E-value=2.2e+02 Score=19.67 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.3
Q ss_pred CChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 120 YDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 120 ~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..++-+.++.+.|++++|.++.|..+...
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~~~ 38 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSVSR 38 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcCCC
Confidence 35777889999999999999999887543
No 264
>PRK06523 short chain dehydrogenase; Provisional
Probab=24.19 E-value=1.6e+02 Score=27.32 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=15.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC
Q 016296 127 MIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 127 ~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.+++.++..||+|.+|.-|--.
T Consensus 165 ~~a~~~~~~gi~v~~i~Pg~v~ 186 (260)
T PRK06523 165 SLSKEVAPKGVRVNTVSPGWIE 186 (260)
T ss_pred HHHHHHhhcCcEEEEEecCccc
Confidence 4455666778888888888643
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.16 E-value=5.9e+02 Score=24.99 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.+.++|+|+|-+...-.-.+.++|..+++.|-+|-+|..-.--....+-|+.+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 445789999654433233478999999999999998875432112235566666655
No 266
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=24.09 E-value=3.9e+02 Score=25.42 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=40.2
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+-++|..+-..+=++....|.- ...+..+.|-+++-||... -..-..+-..|+..+..|.+|++|-..
T Consensus 30 ifl~~~i~~~~a~~ii~~Ll~L-~~~~~~~~I~l~INSpGG~-v~~GlaIyd~m~~~~~~V~Ti~~G~Aa 97 (201)
T PRK14513 30 IFVGTPIESQMANTIVAQLLLL-DSQNPEQEIQMYINCPGGE-VYAGLAIYDTMRYIKAPVSTICVGIAM 97 (201)
T ss_pred EEECCEEcHHHHHHHHHHHHHh-hccCCCCCEEEEEECCCCc-hhhHHHHHHHHHhcCCCEEEEEEeeeh
Confidence 5667776665555554333222 2345677899999998865 222334444445555567777777654
No 267
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.94 E-value=1.7e+02 Score=25.42 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=50.9
Q ss_pred EEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 112 VFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 112 vFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
||++++....|.++..-+-.+ +..|.|.=-+||.-..--.+..+.+++.+-.-|.+|+.+=.-|
T Consensus 2 ivl~~~~~v~Ps~l~~~~~~~-~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRG 65 (104)
T PF09875_consen 2 IVLSSEANVSPSDLAMKLYEL-SLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRG 65 (104)
T ss_pred EEeCCCCCcCHHHHHHHHHhc-CCCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCC
Confidence 567777667888888887776 5669999999999776668899999999987777787776555
No 268
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=23.85 E-value=3.5e+02 Score=25.33 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=36.1
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
|.++|..+-..+=++....+.-. .....+.|++|+.||... -..-..+...++..+..|.++..|-..
T Consensus 34 i~i~g~I~~~~~~~i~~~L~~l~-~~~~~~~I~l~InSpGG~-v~~g~~I~d~i~~~~~~v~t~~~G~aa 101 (200)
T PRK00277 34 IFLGGEVEDHMANLIVAQLLFLE-AEDPDKDIYLYINSPGGS-VTAGLAIYDTMQFIKPDVSTICIGQAA 101 (200)
T ss_pred EEECCEECHHHHHHHHHHHHHhh-ccCCCCCEEEEEECCCCc-HHHHHHHHHHHHhcCCCEEEEEEeEec
Confidence 56677665544444333332222 233456699999998865 233334444445444555555555543
No 269
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=23.85 E-value=3.3e+02 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.349 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhCCceEEEEE---eCCCCCCcHHHHHHHHHH
Q 016296 123 KVMEMIGKKLKKNSVAIDIVN---FGEDDDGKPEKLEALLAA 161 (392)
Q Consensus 123 ~~l~~~ak~LKknnI~VdiI~---fG~e~~~n~~~l~~~~~~ 161 (392)
..+.++.++++..++.|-.|+ ||.....+.+.+++|+++
T Consensus 42 ~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 42 RALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred HHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 366788888888888766665 454422456788999864
No 270
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.81 E-value=2.8e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=40.2
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
|-|.++|. | ....++-+.|+.+||...+|.|.... -..+.|+.+++.+.
T Consensus 3 itiy~~p~-C--~t~rka~~~L~~~gi~~~~~~y~~~~-~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPN-C--STCRKALAWLEEHGIEYTFIDYLKTP-PSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCC-C--hHHHHHHHHHHHcCCCcEEEEeecCC-CCHHHHHHHHHHcC
Confidence 34456664 3 26788899999999999999999988 78899999998886
No 271
>PRK05723 flavodoxin; Provisional
Probab=23.75 E-value=99 Score=27.75 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 109 RIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 109 RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
+|.||.||-....+.-..+++++|+..++.|.++.
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 68888899766667777888899999899887754
No 272
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.70 E-value=1.8e+02 Score=23.52 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=39.5
Q ss_pred ccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC-C---hhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 80 DIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY-D---RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 80 ~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~-d---~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
++.|...|.++=.+-...+..... ...+.|++=.|.... | -+.+..+.+++++.|+.+.+++.....
T Consensus 13 ~~~G~l~f~~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v 83 (100)
T cd06844 13 RLEGELDHHSVEQFKEELLHNITN--VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAV 83 (100)
T ss_pred EEEEEecHhhHHHHHHHHHHHHHh--CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHH
Confidence 455666666665554433222211 222344454454442 2 456788999999999999998876443
No 273
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.63 E-value=2.8e+02 Score=28.43 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
-....++++.|++.||+|.+|.+..-.--..+.+..+++.+ .+++++-..
T Consensus 258 ~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~-----k~VivvE~n 307 (352)
T PRK07119 258 ARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKG-----KGFLSVEMS 307 (352)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCC-----CEEEEEeCC
Confidence 46688899999999999999999875433455667776544 256666543
No 274
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.62 E-value=7.6e+02 Score=24.84 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCc--eEEEecCCChhhhhhhhc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSS--HLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~S--h~v~vp~g~~lLsD~l~s 186 (392)
.||.+|. ...+..=.....|.+++-||.+.++-|.+.. ...+ +...++.+|.+..- -+|-.|--+++-.+.+++
T Consensus 36 aiI~vg~-d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-t~~e-l~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~ 111 (284)
T PRK14193 36 GTVLVGD-DPGSQAYVRGKHRDCAEVGITSIRRDLPADA-TQEE-LNAVIDELNADPACTGYIVQLPLPKHLDENAVLE 111 (284)
T ss_pred EEEEeCC-CHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3444444 2223333456788999999999999999876 4444 55566789876643 455556444444444443
No 275
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.57 E-value=2.4e+02 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=24.9
Q ss_pred cCCCCCChhhHHHHHHHHHhCCceEEEEEeC
Q 016296 115 GSPVKYDRKVMEMIGKKLKKNSVAIDIVNFG 145 (392)
Q Consensus 115 gSp~~~d~~~l~~~ak~LKknnI~VdiI~fG 145 (392)
+.....+++-+.++.+.|.+++|.||.|.-+
T Consensus 8 ~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s 38 (75)
T cd04935 8 TLGMWQQVGFLADVFAPFKKHGVSVDLVSTS 38 (75)
T ss_pred cCCCCCccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 4444556788889999999999999999753
No 276
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=23.43 E-value=3.9e+02 Score=29.09 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCc-eEEEEEeC
Q 016296 67 TDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSV-AIDIVNFG 145 (392)
Q Consensus 67 ~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI-~VdiI~fG 145 (392)
.|..+|-.+|.+=+..-+..|..+++.+. .. ++. -.-+=+++.+-+..+-.+|+.+++.++++|| +|.|=.|.
T Consensus 74 q~~~ri~~ai~~g~~~~n~~l~~~~~~~~----~~-~~~-lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~ 147 (501)
T TIGR01307 74 QDLVRISQAIKDGEFFANPALLGAIDRAK----DN-NGK-LHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFT 147 (501)
T ss_pred cchHHHHHHHhcCCcccCHHHHHHHHHHH----hc-CCc-eEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 46677777777666666667777766653 21 111 1112344455455688999999999999999 78888888
Q ss_pred CCCCCc-------HHHHHHHHHHH
Q 016296 146 EDDDGK-------PEKLEALLAAV 162 (392)
Q Consensus 146 ~e~~~n-------~~~l~~~~~~v 162 (392)
+.-+.. .+.|+++++.+
T Consensus 148 DGRD~~p~s~~~~~~~l~~~~~~~ 171 (501)
T TIGR01307 148 DGRDTAPKSAESYLEQLQAFLKEI 171 (501)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHh
Confidence 765322 33555555543
No 277
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=23.33 E-value=1.3e+02 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
..-|+++|.-.. +.++..+++|+|...+|.+-.|+
T Consensus 81 ~~DRVllfs~~~---~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFS---TDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S-----HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCC---CCHHHHHHHHHHHHCCCCEEEEE
Confidence 456788775432 46689999999999999888888
No 278
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.33 E-value=4.1e+02 Score=22.79 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEEEcCCCCCC------hhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 111 IVFAGSPVKYD------RKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 111 VvFvgSp~~~d------~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
|+|+|+.++.. ..-...++++|++..-.+.++++|-....-...+..|-+.+
T Consensus 3 i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~ 60 (177)
T cd01822 3 ILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALL 60 (177)
T ss_pred EEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHH
Confidence 45667666532 22345678888877778888888876522233444444333
No 279
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.33 E-value=7.7e+02 Score=24.79 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=45.0
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCce--EEEecCCChhhhhhhh
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH--LVHVPTGPNALSDVLI 185 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh--~v~vp~g~~lLsD~l~ 185 (392)
.||.+|. ...+..=.....|.+++-||.+.++-|.+.. ...++ ...++.+|.++.-| +|-.|--+++-...++
T Consensus 36 aii~vg~-~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~~l-~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~ 110 (286)
T PRK14175 36 SVILVGN-DGASQSYVRSKKKAAEKIGMISEIVHLEETA-TEEEV-LNELNRLNNDDSVSGILVQVPLPKQVSEQKIL 110 (286)
T ss_pred EEEEeCC-CHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHHH-HHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHH
Confidence 3444444 2222333456688999999999999999887 44444 45568898766544 4444543444444443
No 280
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=23.15 E-value=2.4e+02 Score=25.37 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 105 NQRQRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 105 ~~~~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
...+.|+|++.||... +.-.++.+.+.+++ .|.+.+.|...
T Consensus 28 ~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~-~v~~~~~g~aa 70 (162)
T cd07013 28 NPEKDIYLYINSPGGDVFAGMAIYDTIKFIKA-DVVTIIDGLAA 70 (162)
T ss_pred CCCCCEEEEEECCCCcHHHHHHHHHHHHhcCC-CceEEEEeehh
Confidence 3457799999999875 23345666666543 34444444443
No 281
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=23.06 E-value=2.9e+02 Score=25.95 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 106 QRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 106 ~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.++++|+|+|... ..+.+..+++.+++.++++.++|-|...
T Consensus 169 ~~~~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~ 209 (335)
T cd03802 169 PKGDYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP 209 (335)
T ss_pred CCCCEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 4566888888763 3455566667778889999999988654
No 282
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=22.73 E-value=2.8e+02 Score=26.78 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
-|||.|++..........+++.+.+.+++|--|++|-.. ++.+|-..+.
T Consensus 58 givl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~-----l~~~~g~~~~ 106 (235)
T cd01746 58 GILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQL-----AVIEFARNVL 106 (235)
T ss_pred EEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHH-----HHHHHHHHhc
Confidence 477888876544445567788888999999999999876 6666665554
No 283
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=22.51 E-value=4.5e+02 Score=24.85 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=37.0
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+-++|..+-..+=++....|.- ...+..+.|.+++-||... -..-..+-..++..+..|.+|+.|-..
T Consensus 28 ifl~~~i~~~~a~~ii~~Ll~l-~~~~~~~~I~l~INSpGG~-v~~g~aIyd~m~~~~~~V~t~~~G~Aa 95 (196)
T PRK12551 28 IFLGEPVTSDSANRIVAQLLFL-EAEDPEKDIYLYINSPGGS-VYDGLGIFDTMQHVKPDVHTVCVGLAA 95 (196)
T ss_pred EEECCeecHHHHHHHHHHHHHh-hccCCCCCEEEEEeCCCcc-hhhHHHHHHHHHhcCCCEEEEEEEEeh
Confidence 4667765544444443332221 1345567899999998865 222233344444445556666666544
No 284
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=22.45 E-value=2.2e+02 Score=29.21 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 124 VMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 124 ~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
...+++++|++++|.|.||.+-.-.--..+.|.+.++.+ .++++|-.+
T Consensus 242 ~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t-----~~vvtvEE~ 289 (356)
T PLN02683 242 YALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKT-----NRLVTVEEG 289 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhc-----CeEEEEeCC
Confidence 456778888888999999988875433455566655544 367777654
No 285
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=22.39 E-value=1.8e+02 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCC
Q 016296 108 QRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDD 149 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~ 149 (392)
-+.|+|--+|.-+.+-...-+.+.||..+++|+=|++|=...
T Consensus 57 i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~G 98 (112)
T cd01025 57 VKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPVG 98 (112)
T ss_pred CcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCCC
Confidence 346777777766667777888999999999999999997653
No 286
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=22.33 E-value=2.4e+02 Score=28.63 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 123 KVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 123 ~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
....++++.|++.+|.+.||.+-.-..-..+.|.+.++++ .++|++-.+
T Consensus 214 ~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t-----~~vv~vEE~ 262 (327)
T CHL00144 214 HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT-----HKVLIVEEC 262 (327)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh-----CcEEEEECC
Confidence 3567889999999999999999886543455555555544 367777664
No 287
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.32 E-value=3.8e+02 Score=23.56 Aligned_cols=64 Identities=16% Similarity=-0.009 Sum_probs=42.1
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC------C-----CcHHHHHHHHHHHcCCCCceEEEecCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD------D-----GKPEKLEALLAAVNNNDSSHLVHVPTG 176 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~------~-----~n~~~l~~~~~~vn~~d~Sh~v~vp~g 176 (392)
.++++..|...+-.+...+.+.+++.++++.-|-+---. . .+.+.+++|++.+ .-.++..||-.
T Consensus 94 ~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ip~~ 168 (169)
T cd02037 94 GAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEEL---GVPLLGKIPLD 168 (169)
T ss_pred eEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHc---CCCEEEeccCC
Confidence 356666666677888899999999998876533222110 0 0235788888777 45778877754
No 288
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=22.30 E-value=5.8e+02 Score=23.09 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=56.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCH-HHHHHhhcccc------cCCcCcHHHHHHH
Q 016296 21 YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL-GKILACMHELD------IGGEMNIAAGIQV 93 (392)
Q Consensus 21 ~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~-~kil~~L~~i~------~~G~~sL~~gL~v 93 (392)
+.++-.++...+++.+++. -..+|+++..... . ...+.++ .-+...+.... ..+..+...+.+.
T Consensus 94 v~~d~~~~~~~~~~~l~~~-----g~~~i~~v~~~~~--~--~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T cd01542 94 VVYDDYGAGYELGEYLAQQ-----GHKNIAYLGVSES--D--IAVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEA 164 (259)
T ss_pred EEECcHHHHHHHHHHHHHc-----CCCcEEEEcCCcc--c--chhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHH
Confidence 3467788888888888873 2457887742211 1 0000111 11223332211 1334455666666
Q ss_pred HHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCce----EEEEEeCCCC
Q 016296 94 AQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVA----IDIVNFGEDD 148 (392)
Q Consensus 94 A~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~----VdiI~fG~e~ 148 (392)
....|+.. + .. .||+.+ ......+.+.|++.|++ |.||||+...
T Consensus 165 ~~~~l~~~--~--~~--~i~~~~-----d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~ 212 (259)
T cd01542 165 AQELLEPQ--P--PD--AIVCAT-----DTIALGAMKYLQELGRRIPEDISVAGFGGYE 212 (259)
T ss_pred HHHHhcCC--C--CC--EEEEcC-----cHHHHHHHHHHHHcCCCCCCceEEEecCCch
Confidence 55555431 1 22 334333 22355677777888876 6888888653
No 289
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.28 E-value=5e+02 Score=23.50 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCc
Q 016296 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSS 168 (392)
Q Consensus 89 ~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~S 168 (392)
+|..+....|++.. ....| |.|+|+ .++.+.++++++++.-=.+.|+|+-..- -..+-...+++.+|... -
T Consensus 30 ~g~dl~~~ll~~~~--~~~~~-v~llG~----~~~~~~~~~~~l~~~yp~l~i~g~~~g~-~~~~~~~~i~~~I~~~~-p 100 (171)
T cd06533 30 TGSDLMPALLELAA--QKGLR-VFLLGA----KPEVLEKAAERLRARYPGLKIVGYHHGY-FGPEEEEEIIERINASG-A 100 (171)
T ss_pred CcHHHHHHHHHHHH--HcCCe-EEEECC----CHHHHHHHHHHHHHHCCCcEEEEecCCC-CChhhHHHHHHHHHHcC-C
Confidence 34555555565532 12444 556677 5888999999999997778899854433 22333444666776533 4
Q ss_pred eEEEecCC
Q 016296 169 HLVHVPTG 176 (392)
Q Consensus 169 h~v~vp~g 176 (392)
.+|.|--|
T Consensus 101 div~vglG 108 (171)
T cd06533 101 DILFVGLG 108 (171)
T ss_pred CEEEEECC
Confidence 55555444
No 290
>PRK13981 NAD synthetase; Provisional
Probab=22.17 E-value=9.9e+02 Score=25.61 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCCCC--cHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcCcHHHHHHHHHH
Q 016296 19 GDYSP--SRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQL 96 (392)
Q Consensus 19 gD~~P--tRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~gL~vA~l 96 (392)
..+.| ++.....+++..++..|.+..-...| ||.+.|+. . .++ ...+|..
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-vvglSGGi-----------D--------------Sa~--~a~la~~ 302 (540)
T PRK13981 251 GPIAPPPEGEAEDYRALVLGLRDYVRKNGFPGV-VLGLSGGI-----------D--------------SAL--VAAIAVD 302 (540)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCeE-EEECCCCH-----------H--------------HHH--HHHHHHH
Confidence 35555 56778888888888888876544444 34444431 1 111 1122333
Q ss_pred HhcccCCCCCCcEEEE-EEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 97 ALKHRQNKNQRQRIIV-FAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 97 aLkhr~~k~~~~RIVv-FvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+|.+ .+++. ++.+.. ..+.++..+-+.+++-||...+|.+..
T Consensus 303 a~g~-------~~v~~~~~p~~~-~~~~~~~~a~~~a~~lgi~~~~i~i~~ 345 (540)
T PRK13981 303 ALGA-------ERVRAVMMPSRY-TSEESLDDAAALAKNLGVRYDIIPIEP 345 (540)
T ss_pred HhCc-------CcEEEEECCCCC-CCHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 3321 23433 334332 234556566666788899999988764
No 291
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.11 E-value=8.2e+02 Score=24.63 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=46.1
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 111 IVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 111 VvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
||.+|. ...+..=.....|.+++-||.+..+-|.+.. ... -+...++.+|.++. .-+|-.|--.++-.+.+++
T Consensus 37 ii~vg~-d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~~-~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 37 VILVGD-NPASQVYVRNKVKACEDNGFHSLKDRYPADL-SEA-ELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred EEEeCC-CchHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHH-HHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 444443 3333444556789999999999999999876 344 45566678987654 4566556544544444443
No 292
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.02 E-value=1.4e+02 Score=23.70 Aligned_cols=53 Identities=25% Similarity=0.267 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEEEcCCCC---CChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 89 AGIQVAQLALKHRQNKNQRQRIIVFAGSPVK---YDRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 89 ~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~---~d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
.|+..+..+|+... ..+|+|+++|.... -+......+++.+.+.... +|-+|.
T Consensus 25 ~s~~a~l~~l~~~~---~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~--vi~~~~ 80 (91)
T PF02875_consen 25 DSIRALLEALKELY---PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV--VILTGD 80 (91)
T ss_dssp HHHHHHHHHHHHHC---TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE--EEEETS
T ss_pred HHHHHHHHHHHHhc---cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE--EEEcCC
Confidence 45666666666531 24555666665333 2222233455555554544 444444
No 293
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=22.01 E-value=4.2e+02 Score=22.03 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=33.1
Q ss_pred EEEEEEcCCCC--C--ChhhHHHHHHHHHhCC---ceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 109 RIIVFAGSPVK--Y--DRKVMEMIGKKLKKNS---VAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 109 RIVvFvgSp~~--~--d~~~l~~~ak~LKknn---I~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
.+|+|.++--. | .-..+.++.+++++++ |.|-.|++-... .+.+.+++|++..+
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~-d~~~~~~~~~~~~~ 85 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPER-DTPEVLKAYAKAFG 85 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCC-CCHHHHHHHHHHhC
Confidence 46666554332 3 2234566677777764 766666665443 46788999998764
No 294
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.98 E-value=59 Score=31.52 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=44.3
Q ss_pred cccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 79 LDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 79 i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
.-.+|+..|+.+|..=...|+. .+.+.+=..+..|.+-++ .+.++.++|+++|+.|++|+=|=.
T Consensus 52 rAMng~~~F~eaL~~Rl~llqp----~~~qv~~~v~~~k~~lT~-Gi~eLv~~L~~~~~~v~liSGGF~ 115 (227)
T KOG1615|consen 52 RAMNGEADFQEALAARLSLLQP----LQVQVEQFVIKQKPTLTP-GIRELVSRLHARGTQVYLISGGFR 115 (227)
T ss_pred HHhCCCCcHHHHHHHHHHHhcc----cHHHHHHHHhcCCCccCC-CHHHHHHHHHHcCCeEEEEcCChH
Confidence 3468999999999876555543 222222222355666544 588999999999999999986643
No 295
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=21.91 E-value=1.3e+02 Score=26.96 Aligned_cols=38 Identities=8% Similarity=0.217 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCC-ChhhHHH-HHHHHH-hCCceEEEEEeCC
Q 016296 109 RIIVFAGSPVKY-DRKVMEM-IGKKLK-KNSVAIDIVNFGE 146 (392)
Q Consensus 109 RIVvFvgSp~~~-d~~~l~~-~ak~LK-knnI~VdiI~fG~ 146 (392)
+|++|+||+... ....+.+ .++.+. +.++.|.+|.+..
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~ 41 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLAD 41 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhh
Confidence 488999999753 3334444 444554 5688888887754
No 296
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.83 E-value=1.1e+02 Score=27.39 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=54.2
Q ss_pred cEEEEEecCCCceEEECCCCCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHH
Q 016296 48 TVGILTMGGKGVRVLTTPTTDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEM 127 (392)
Q Consensus 48 ~VGLvtmag~~~~vlvtlT~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~ 127 (392)
.++++.+-.. +.+-++--.++... ....+...++..-++.-.. ++. . . .-|.|+|+. .....+..
T Consensus 15 ~~~~~vfl~G-CnlrC~~C~n~~~~-----~~~~g~~lt~eel~~~I~~-~~~---~-~--~gVt~SGGE--l~~~~l~~ 79 (147)
T TIGR02826 15 EYSLAFYITG-CPLGCKGCHSPESW-----HLSEGTKLTPEYLTKTLDK-YRS---L-I--SCVLFLGGE--WNREALLS 79 (147)
T ss_pred CEEEEEEeCC-CCCCCCCCCChHHc-----CCCCCcCCCHHHHHHHHHH-hCC---C-C--CEEEEechh--cCHHHHHH
Confidence 4555555532 45556544443211 1111234555544444221 111 1 1 259999998 56778999
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 128 IGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 128 ~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
+++.+|+.++++.+.. |- ...++.+.++..+
T Consensus 80 ll~~lk~~Gl~i~l~T-g~---~~~~~~~~il~~i 110 (147)
T TIGR02826 80 LLKIFKEKGLKTCLYT-GL---EPKDIPLELVQHL 110 (147)
T ss_pred HHHHHHHCCCCEEEEC-CC---CCHHHHHHHHHhC
Confidence 9999999999887765 31 2234566666554
No 297
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=21.81 E-value=2.3e+02 Score=22.83 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=37.6
Q ss_pred cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCC----C-------ChhhHHHHHHHHHhCC-ceEEEEEeCCC
Q 016296 81 IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVK----Y-------DRKVMEMIGKKLKKNS-VAIDIVNFGED 147 (392)
Q Consensus 81 ~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~----~-------d~~~l~~~ak~LKknn-I~VdiI~fG~e 147 (392)
|.+...-..++.++..++... .. ...|.||+-++.. . +...+.+..+.|++.+ |+|.+-..+..
T Consensus 11 p~~~~~~~~~~~~~~~~~~~~-~~--~~~v~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~~~~~ 86 (122)
T PF02635_consen 11 PYDDERAKIALRLANAAAAMG-DY--GHDVVVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYVCETCLK 86 (122)
T ss_dssp TTTBSHHHHHHHHHHHHHHTT-HT--TSEEEEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEEEHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-CC--CCcEEEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEEcHHHHH
Confidence 445555667777777665431 11 3445555544332 1 2355889999999997 99888665543
No 298
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=21.76 E-value=3.1e+02 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCChhh-HHHHHHHHHhCCceEEEEEeCCC
Q 016296 110 IIVFAGSPVKYDRKV-MEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 110 IVvFvgSp~~~d~~~-l~~~ak~LKknnI~VdiI~fG~e 147 (392)
+|+|.|-+... ... +..+++.|.+.|..|.++.+-..
T Consensus 2 ~I~ieG~~GsG-KtT~~~~L~~~l~~~g~~v~~~~~~~~ 39 (200)
T cd01672 2 FIVFEGIDGAG-KTTLIELLAERLEARGYEVVLTREPGG 39 (200)
T ss_pred EEEEECCCCCC-HHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 56666655443 444 44667888888888877766443
No 299
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.74 E-value=5.4e+02 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=22.8
Q ss_pred cCCCCCChhhHHHHHHHHHhCCce-EEEEEeCCCC
Q 016296 115 GSPVKYDRKVMEMIGKKLKKNSVA-IDIVNFGEDD 148 (392)
Q Consensus 115 gSp~~~d~~~l~~~ak~LKknnI~-VdiI~fG~e~ 148 (392)
.+-+..+-.++..+++.++++||. |.|=.|.+.-
T Consensus 38 dGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 38 DGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp S-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred CCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 444456899999999999999986 7676776544
No 300
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=21.72 E-value=2e+02 Score=26.17 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=31.8
Q ss_pred CCCcEEEEEEcCCCCCC--hhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 105 NQRQRIIVFAGSPVKYD--RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 105 ~~~~RIVvFvgSp~~~d--~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..+++|+++.|+....+ +.-..+++..|++++|..+|.+.-.++
T Consensus 101 ~~P~~IsLvGC~l~~~~~~~~fa~~f~~~L~~~gi~~~V~A~~~~v 146 (157)
T PF11713_consen 101 ISPKKISLVGCSLADNNKQESFALQFAQALKKQGINASVSAYTSEV 146 (157)
T ss_dssp --ESEEEEESSS-S-TTGGGSHHHHHHHHHHHHHHCEEEEEESS-E
T ss_pred CCCCEEEEEEecccCCcccccHHHHHHHHHHhcCCcceEEEEEeeE
Confidence 35668887777766553 334789999999999999999998877
No 301
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.67 E-value=8.4e+02 Score=24.60 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=46.1
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCC--ceEEEecCCChhhhhhhhc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDS--SHLVHVPTGPNALSDVLIS 186 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~--Sh~v~vp~g~~lLsD~l~s 186 (392)
.||.+|. ...+..=.....|.+++-||.+.++-|.+.. ...+ +...++.+|.+++ .-+|-.|--.++-.+.+++
T Consensus 36 a~i~vg~-~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~e-l~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~ 111 (296)
T PRK14188 36 AVVLVGE-DPASQVYVRSKGKQTKEAGMASFEHKLPADT-SQAE-LLALIARLNADPAIHGILVQLPLPKHLDSEAVIQ 111 (296)
T ss_pred EEEEeCC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CHHH-HHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 3444444 3333444556789999999999999998887 4444 4456778987664 3455555434443344443
No 302
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.67 E-value=8.4e+02 Score=24.59 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCce--EEEecCCChhhhhhhhc
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVNNNDSSH--LVHVPTGPNALSDVLIS 186 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn~~d~Sh--~v~vp~g~~lLsD~l~s 186 (392)
.||.+|. ...+..=.....|.+++-||.+.++-|.+.. .. +-|...++.+|.++.-| +|-.|--+++-...+++
T Consensus 35 aii~vg~-d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~-~~-~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~ 110 (286)
T PRK14184 35 AVILVGE-DPASQVYVRNKERACEDAGIVSEAFRLPADT-TQ-EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLE 110 (286)
T ss_pred EEEEeCC-ChhHHHHHHHHHHHHHHcCCEEEEEECCCCC-CH-HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHh
Confidence 3444444 2222333446688999999999999999876 33 44556677898765434 55555434544444443
No 303
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.57 E-value=63 Score=26.71 Aligned_cols=16 Identities=44% Similarity=0.889 Sum_probs=11.3
Q ss_pred CCCCCCHHHHHHHHhh
Q 016296 369 GVDPNDPSVKDLIASL 384 (392)
Q Consensus 369 gvdpn~~~i~~~~~~~ 384 (392)
||||+|+.||.++..+
T Consensus 51 g~~p~s~evq~l~~~~ 66 (118)
T PF07739_consen 51 GVDPDSPEVQELAERW 66 (118)
T ss_dssp T--TT-HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH
Confidence 7999999999998765
No 304
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.40 E-value=1.5e+02 Score=22.54 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHhCCceEEEEE
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~ 143 (392)
..++.++++++|++|+++-.|.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4568889999999998876654
No 305
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=21.39 E-value=4.2e+02 Score=22.39 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=28.9
Q ss_pred cCCCCCChhhHHHHHHHHHhCC--ceEE--EEEeCCCCCCcHHHHHHHHHHHcCCCCceEEEec
Q 016296 115 GSPVKYDRKVMEMIGKKLKKNS--VAID--IVNFGEDDDGKPEKLEALLAAVNNNDSSHLVHVP 174 (392)
Q Consensus 115 gSp~~~d~~~l~~~ak~LKknn--I~Vd--iI~fG~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp 174 (392)
||........+.+++..+++.. ..|. .+.++... =.+.++.+. ..+-.+++++|
T Consensus 10 GS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~--l~~~l~~l~----~~g~~~v~vvP 67 (126)
T PRK00923 10 GSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPT--IPEALKKLI----GTGADKIIVVP 67 (126)
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCC--HHHHHHHHH----HcCCCEEEEEc
Confidence 5654344467788888887742 2343 33444432 133444443 23446788877
No 306
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=21.37 E-value=3e+02 Score=22.06 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.3
Q ss_pred cEEEEEEcC-CCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 108 QRIIVFAGS-PVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 108 ~RIVvFvgS-p~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
.+||||+-| |....=.--.++-+.|++.+|....|.+.. +.++.+.+.+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~ 59 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYS 59 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHh
Confidence 458999854 332223456788889999999999998753 345666665543
No 307
>PLN02530 histidine-tRNA ligase
Probab=21.28 E-value=3.7e+02 Score=28.69 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHHHhhccc-ccCCcCcHHHHHHHHHHHhccc---CCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEe
Q 016296 69 LGKILACMHEL-DIGGEMNIAAGIQVAQLALKHR---QNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNF 144 (392)
Q Consensus 69 ~~kil~~L~~i-~~~G~~sL~~gL~vA~laLkhr---~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~f 144 (392)
+..++..+..- .|.=+.+|+ +..-...|+.. +....+..++|+.-+ ........+++++|+++||+|++.-.
T Consensus 361 YD~Li~~fgg~~~pAvGFa~g--~~~l~~~l~~~g~~p~~~~~~dVlVi~~~--~~~~~~A~~ia~~LR~~Gi~vevd~~ 436 (487)
T PLN02530 361 YDRLLSTFGGEDTPACGFGFG--DAVIVELLKEKGLLPELPHQVDDVVFALD--EDLQGAAAGVASRLREKGRSVDLVLE 436 (487)
T ss_pred HHHHHHHhCCCCCCeeEEEEh--HHHHHHHHHhcCCCCCCCCCCcEEEEEcC--hHHHHHHHHHHHHHHHCCCeEEEecC
Confidence 66666666432 233355665 44333444321 111111223333212 23455688999999999999987533
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCCceEEEecC
Q 016296 145 GEDDDGKPEKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 145 G~e~~~n~~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
. . ++++-++..+...-.|++.+-.
T Consensus 437 ~-~------~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 437 P-K------KLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred C-C------CHHHHHHHHHHCCCCEEEEEch
Confidence 2 1 3344444445445567777754
No 308
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=21.18 E-value=4.4e+02 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCC-ChhhHHHHHHHHHhC--------CceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 109 RIIVFAGSPVKY-DRKVMEMIGKKLKKN--------SVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 109 RIVvFvgSp~~~-d~~~l~~~ak~LKkn--------nI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
.+|+++|..... +-..+.++++.+++. +|++.|||=|... +.|+++++..+
T Consensus 233 ~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~----~~l~~~~~~~~ 292 (415)
T cd03816 233 ALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLK----EKYLERIKELK 292 (415)
T ss_pred eEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccH----HHHHHHHHHcC
Confidence 355566664433 556788888888753 5888888877654 58888887654
No 309
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=21.11 E-value=1.1e+02 Score=31.77 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 107 RQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 107 ~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
++||+++++.. ..|---...+++.|+++|..|++++++.-
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~~ 40 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGKF 40 (406)
T ss_pred CceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHHH
Confidence 35777776665 66677788999999999999999887643
No 310
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=1.6e+02 Score=30.00 Aligned_cols=35 Identities=14% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCcEEEEEE--cCCCCCChhhHHHHHHHHHhCCceEEEEE
Q 016296 105 NQRQRIIVFA--GSPVKYDRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 105 ~~~~RIVvFv--gSp~~~d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
...+|+.||| +-|.. +=..++|.|++.||++.+|-
T Consensus 141 ~~~k~~~V~VtESRP~~----eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 141 DRGKRFKVIVTESRPRG----EGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred hcCCceEEEEEcCCCcc----hHHHHHHHHHHcCCceEEEe
Confidence 3455565665 33322 24567888888888877774
No 311
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=20.98 E-value=2.2e+02 Score=20.66 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 119 KYDRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 119 ~~d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
..+++-+.++.+.|.+.+|.|+.|..+..
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~~~ 38 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQNVS 38 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 34577888999999999999999987643
No 312
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.81 E-value=1.9e+02 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 121 DRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 121 d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..+++.++++.+|++|++ ||++-...
T Consensus 59 ~t~~~~~~~~~a~~~g~~--vi~iT~~~ 84 (128)
T cd05014 59 ETDELLNLLPHLKRRGAP--IIAITGNP 84 (128)
T ss_pred CCHHHHHHHHHHHHCCCe--EEEEeCCC
Confidence 456799999999999975 56665544
No 313
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=20.71 E-value=3.7e+02 Score=27.57 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred CcEEEEEEcCCCCC-ChhhHHHHHHHHHhC-------CceEEEEEeCCCCCCcH---HHHHHHHHHHcCCCCceEEEecC
Q 016296 107 RQRIIVFAGSPVKY-DRKVMEMIGKKLKKN-------SVAIDIVNFGEDDDGKP---EKLEALLAAVNNNDSSHLVHVPT 175 (392)
Q Consensus 107 ~~RIVvFvgSp~~~-d~~~l~~~ak~LKkn-------nI~VdiI~fG~e~~~n~---~~l~~~~~~vn~~d~Sh~v~vp~ 175 (392)
...+|+|+|..... .-..+.++.+++++. ++++.|||=|... ++. +.|+.+++..+-.+.=||+--.+
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~-~~~~~~~~L~~~~~~l~l~~~V~f~g~v~ 314 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNE-DDEKRVEDLKLLAKELGLEDKVEFVVNAP 314 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCc-ccHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34578888865433 445567777777663 5788888765443 333 45666666554333323322112
Q ss_pred CChhhhhhhhcCCc
Q 016296 176 GPNALSDVLISSPV 189 (392)
Q Consensus 176 g~~lLsD~l~sspi 189 (392)
. ..+...+..+-+
T Consensus 315 ~-~~l~~~l~~adv 327 (419)
T cd03806 315 F-EELLEELSTASI 327 (419)
T ss_pred H-HHHHHHHHhCeE
Confidence 2 234455544444
No 314
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.70 E-value=1.9e+02 Score=27.58 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHH
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAV 162 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~v 162 (392)
=|.|+|+.-....+-+..+++.+|+.||.+.+..=|--. .+.++.+...+
T Consensus 41 GVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~---~~~~~~l~~~~ 90 (213)
T PRK10076 41 GVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAP---ASKLLPLAKLC 90 (213)
T ss_pred EEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC---HHHHHHHHHhc
Confidence 488888877666777889999999999988776655432 35666665544
No 315
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=20.68 E-value=1.9e+02 Score=29.99 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCCcEEEEEEc-CCCCC---ChhhHHHHHHHHHhCCceEEEEEeCC
Q 016296 105 NQRQRIIVFAG-SPVKY---DRKVMEMIGKKLKKNSVAIDIVNFGE 146 (392)
Q Consensus 105 ~~~~RIVvFvg-Sp~~~---d~~~l~~~ak~LKknnI~VdiI~fG~ 146 (392)
+.++||++|+. +|... -+..+..+++.|++.|..|.||....
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56789999985 33321 24578899999999999999998654
No 316
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.66 E-value=2.4e+02 Score=21.19 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 110 IIVFAGSPVKYDRKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 110 IVvFvgSp~~~d~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+|-.||.....+++-+.++.+.|.+.+| .+|++|+..
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i--~~i~~~~s~ 38 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPV--HLVSQAAND 38 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCc--eEEEEeCCC
Confidence 5778888887778888888888877765 458888765
No 317
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.58 E-value=3.4e+02 Score=29.52 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=55.2
Q ss_pred CCHHHHHHhhcccccCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCc-eEEEEEeC
Q 016296 67 TDLGKILACMHELDIGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSV-AIDIVNFG 145 (392)
Q Consensus 67 ~D~~kil~~L~~i~~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI-~VdiI~fG 145 (392)
.+..+|-.+|.+=+..-+..|..+++-+ |.. ++ .-.-+=+++.+-+..+-.+++.+++.++++|| +|.|=.|.
T Consensus 78 q~~~~i~~ai~~g~~~~n~~~~~~~~~~----~~~-~~-~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~ 151 (507)
T PRK05434 78 QDLTRINKAIEDGSFFENPALLDAIDKA----KKN-GG-ALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFL 151 (507)
T ss_pred cchHHHHHHHhcCCcccCHHHHHHHHHH----Hhc-CC-eEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4666666666655555566666665554 221 11 11112334444455688999999999999999 88888888
Q ss_pred CCCCCc-------HHHHHHHHHHH
Q 016296 146 EDDDGK-------PEKLEALLAAV 162 (392)
Q Consensus 146 ~e~~~n-------~~~l~~~~~~v 162 (392)
+.-+.. .+.|+.++...
T Consensus 152 DGRD~~p~s~~~~i~~l~~~~~~~ 175 (507)
T PRK05434 152 DGRDTPPKSALGYLEELEAKLAEL 175 (507)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHh
Confidence 765322 33555555544
No 318
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.46 E-value=6.6e+02 Score=22.92 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=62.4
Q ss_pred EEEEeCCccccCCC-CCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCHH-HHHHhhccc--c--
Q 016296 7 MICIDNSEWMRNGD-YSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDLG-KILACMHEL--D-- 80 (392)
Q Consensus 7 ~IvIDnSesMrngD-~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~~-kil~~L~~i--~-- 80 (392)
++++|....-..-+ +..+-+.+...+++.|++ .. ..+|+++. +.. . ...+.++. -+...+..- .
T Consensus 81 vV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~----~g-~~~i~~i~--~~~-~--~~~~~~R~~gf~~~~~~~~~~~~ 150 (264)
T cd06274 81 VVALDRPGDPSRFPSVVSDNRDGAAELTRELLA----AP-PEEVLFLG--GLP-E--LSPSRERLAGFRQALADAGLPVQ 150 (264)
T ss_pred EEEecCccCCCCCCEEEEccHHHHHHHHHHHHH----CC-CCcEEEEe--CCC-c--ccchHHHHHHHHHHHHHcCCCCC
Confidence 56666643211122 335567777888888876 23 24787765 221 1 11111111 122223221 1
Q ss_pred ----cCCcCcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCCChhhHHHHHHHHHhCCce----EEEEEeCCCC
Q 016296 81 ----IGGEMNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKYDRKVMEMIGKKLKKNSVA----IDIVNFGEDD 148 (392)
Q Consensus 81 ----~~G~~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~d~~~l~~~ak~LKknnI~----VdiI~fG~e~ 148 (392)
..+..+...+.+.....|+. ++.... .||..+ .....-+.+.+++.|++ |.||||+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~--ai~~~~-----d~~A~g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 151 PDWIYAEGYSPESGYQLMAELLAR--LGRLPR--ALFTTS-----YTLLEGVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred cceeecCCCChHHHHHHHHHHHcc--CCCCCc--EEEEcC-----hHHHHHHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 12345566777776666653 111122 233222 33455677888899986 8999998643
No 319
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=20.36 E-value=4.5e+02 Score=26.32 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHHHhcccCCCCCCcEEEEEEcCCC------C-CChhhHHHHHHHHHhCCceEEEEEeCCCCCCcHHHHHHHHHHHc
Q 016296 91 IQVAQLALKHRQNKNQRQRIIVFAGSPV------K-YDRKVMEMIGKKLKKNSVAIDIVNFGEDDDGKPEKLEALLAAVN 163 (392)
Q Consensus 91 L~vA~laLkhr~~k~~~~RIVvFvgSp~------~-~d~~~l~~~ak~LKknnI~VdiI~fG~e~~~n~~~l~~~~~~vn 163 (392)
+..|..+|. ..+.++++|..|-|+ + +-|-....+++.|++-|..+.+|. .. .+.+.++++++...
T Consensus 28 ~~~Aa~~L~----~~~~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivt---d~-~~~~~~~~~~~~~~ 99 (291)
T PF14336_consen 28 LLRAALSLA----LSHAKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVT---DE-RCAPVVKAAVRAAG 99 (291)
T ss_pred HHHHHHHhc----ccCCCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEE---CH-HHHHHHHHHHHHHh
Confidence 455666672 236677888889987 1 247788999999999999999887 22 45677777776553
No 320
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.36 E-value=1.8e+02 Score=27.52 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCcEEEEEEcCCCCC--Ch---------hhH----HHHHHHHHhCCceEEEEEeCCCC
Q 016296 85 MNIAAGIQVAQLALKHRQNKNQRQRIIVFAGSPVKY--DR---------KVM----EMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 85 ~sL~~gL~vA~laLkhr~~k~~~~RIVvFvgSp~~~--d~---------~~l----~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
.++...+.+++.++++... ....||| +++|.... .+ .-+ ..+++.+...||+|.+|.-|--.
T Consensus 115 ~n~~~~~~~~~~~l~~m~~-~~~g~Ii-~isS~~~~~~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~ 191 (263)
T PRK08339 115 LLLYPAVYLTRALVPAMER-KGFGRII-YSTSVAIKEPIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIR 191 (263)
T ss_pred HHhHHHHHHHHHHHHHHHH-cCCCEEE-EEcCccccCCCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCc
Confidence 3445556666666655421 2234554 55554321 11 111 34567778899999999999764
No 321
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.13 E-value=1.9e+02 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCC
Q 016296 122 RKVMEMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 122 ~~~l~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
...+.++++++|++++ .+|+|....
T Consensus 73 ~~~~~~~~~~a~~~g~--~iv~iT~~~ 97 (139)
T cd05013 73 TKETVEAAEIAKERGA--KVIAITDSA 97 (139)
T ss_pred CHHHHHHHHHHHHcCC--eEEEEcCCC
Confidence 4678999999999997 456666655
No 322
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=20.11 E-value=4.2e+02 Score=28.13 Aligned_cols=119 Identities=11% Similarity=0.139 Sum_probs=55.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcCCCCCcEEEEEecCCCceEEECCCCCH-HHHHHhhcccccCCcCcHHHHHHHHHHHh
Q 016296 20 DYSPSRLRAQADAVSLICGAKTQSNPENTVGILTMGGKGVRVLTTPTTDL-GKILACMHELDIGGEMNIAAGIQVAQLAL 98 (392)
Q Consensus 20 D~~PtRl~aq~dav~~fv~~k~~~NPes~VGLvtmag~~~~vlvtlT~D~-~kil~~L~~i~~~G~~sL~~gL~vA~laL 98 (392)
.|.|--|+-+.+.+..-+.+..+.+=-..|+++...|... ....-. .++...+......+......+.......+
T Consensus 69 ~~~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~----~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~ 144 (501)
T cd02766 69 QWERISWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMG----LLQRAARGRFFHALGASELRGTICSGAGIEAQKYDF 144 (501)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCcc----ccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhc
Confidence 5788888877776655555544332224566655544321 011111 34444444333333322222222112222
Q ss_pred cccC-C---CCCCcEEEEEEcCCCCC-ChhhHHHHHHHHHhCCceEEEEE
Q 016296 99 KHRQ-N---KNQRQRIIVFAGSPVKY-DRKVMEMIGKKLKKNSVAIDIVN 143 (392)
Q Consensus 99 khr~-~---k~~~~RIVvFvgSp~~~-d~~~l~~~ak~LKknnI~VdiI~ 143 (392)
-... . .-...+.|||+|+.... ++ .+....+++++++.+|-+|.
T Consensus 145 G~~~~~~~~d~~~ad~il~~G~Np~~s~p-~~~~~~~~a~~~GaklivvD 193 (501)
T cd02766 145 GASLGNDPEDMVNADLIVIWGINPAATNI-HLMRIIQEARKRGAKVVVID 193 (501)
T ss_pred CCCCCCCHHHHhcCCEEEEECCChhhhch-hHHHHHHHHHHCCCEEEEEC
Confidence 2110 0 01335577788876543 44 34445566888998665553
No 323
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=20.06 E-value=1.6e+02 Score=25.09 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCCCChhhHH---HHHHHHHhCCceEEEEEeCCCC
Q 016296 108 QRIIVFAGSPVKYDRKVME---MIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 108 ~RIVvFvgSp~~~d~~~l~---~~ak~LKknnI~VdiI~fG~e~ 148 (392)
+||.|+.|+...+++-.+. .+.+.|.+++..|..|.+-...
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 5889999999888776654 5678888899999988887554
No 324
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=20.02 E-value=2.6e+02 Score=26.07 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC
Q 016296 126 EMIGKKLKKNSVAIDIVNFGEDD 148 (392)
Q Consensus 126 ~~~ak~LKknnI~VdiI~fG~e~ 148 (392)
..+++.++..||+|..|..|.-.
T Consensus 171 ~~la~e~~~~gi~v~~v~Pg~v~ 193 (265)
T PRK07097 171 KNIASEYGEANIQCNGIGPGYIA 193 (265)
T ss_pred HHHHHHhhhcCceEEEEEecccc
Confidence 35567777889999999999754
No 325
>PRK09739 hypothetical protein; Provisional
Probab=20.01 E-value=2e+02 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCC--ChhhHHHHHHHHHhCCceEEEEEeCCC
Q 016296 108 QRIIVFAGSPVKY--DRKVMEMIGKKLKKNSVAIDIVNFGED 147 (392)
Q Consensus 108 ~RIVvFvgSp~~~--d~~~l~~~ak~LKknnI~VdiI~fG~e 147 (392)
++|+++.|||... +..-...+++.+++.+..|.++.+.+.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~ 45 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRS 45 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhh
Confidence 5789999999764 222345667788888999999988764
Done!