BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016297
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/389 (88%), Positives = 372/389 (95%)
Query: 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
M+GVD LA ERKKA FDVDEMKIVWAGSRH F+++DRI++LVASDP F K+ R ML RKE
Sbjct: 20 MEGVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKE 79
Query: 61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
LFKNTLRKAAYAWKRIIELRLS+EEA+MLR VDEPAFTDLHWGMF+PAIKGQGTD+Q +
Sbjct: 80 LFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQE 139
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG
Sbjct: 140 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 199
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
KVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAYN+MDNG
Sbjct: 200 KVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNG 259
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
VL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS A+SRAV
Sbjct: 260 VLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAV 319
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
CIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 320 CIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 379
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
RL ANDFSTLPEAHACTAGLKSLTT+ATA
Sbjct: 380 RLAANDFSTLPEAHACTAGLKSLTTSATA 408
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/389 (83%), Positives = 361/389 (92%)
Query: 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60
Query: 61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
LFK+TLRK A+A+KRIIELRL+EEEA LR +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61 LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLG 180
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATA 389
RL A+DF+TLPEAHACTAGLKSLTTTATA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATA 389
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 357 bits (915), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 181/387 (46%), Positives = 259/387 (66%), Gaps = 8/387 (2%)
Query: 7 LAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTL 66
L ER A F+ + + + GS + I L+ +DP F+ ++ L+R + ++ +
Sbjct: 5 LRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAV 64
Query: 67 RKAAYAWKRIIELRLSEEEASM-LRSSVD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWL 123
+K+A K++ E +S+ E M ++SV P DLH GMF+P + Q T EQ +++
Sbjct: 65 KKSATMVKKMREYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFF 124
Query: 124 PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183
A+ +EI G YAQTE+GHG++++GLETTAT+DP+T EF+++SPT+TS KWWPGGLGK S
Sbjct: 125 MPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTS 184
Query: 184 THAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243
HA+V A+LIT G+ +G++ F+V +R + H PLPGIT+GDIG KFG Y MDNG L+
Sbjct: 185 NHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEMDNGYLK 241
Query: 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIA 303
++ RIPR MLM+ +QV +G YV+ + +L YGTMV+VR +V +A+ +LS+A IA
Sbjct: 242 MDNYRIPRENMLMKYAQVKPDGTYVKP-LSNKLTYGTMVFVRSFLVGNAAQSLSKACTIA 300
Query: 304 TRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363
RYSAVRRQ K PE Q++D++TQQ +LFPLLA+AYAF FVG ++K Y + + +
Sbjct: 301 IRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIG 360
Query: 364 ANDFSTLPEAHACTAGLKSLTT-TATA 389
D S LPE HA TAGLK+ TT TA A
Sbjct: 361 QGDLSELPELHALTAGLKAFTTWTANA 387
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 105 MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164
+++ I G+ +Q Q+W+ + IGC+A +E G+GS+ TTA + D +V+
Sbjct: 98 LYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAR--EEGDSWVL 155
Query: 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGD 224
+ + W ++ VV+A Q+ G++ F+V + P PG+T+G
Sbjct: 156 NGTKAWITNSWE------ASATVVFASTDRSRQNKGISAFLVPM-------PTPGLTLGK 202
Query: 225 IGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
K G A +T + L FE RIP+ +L
Sbjct: 203 KEDKLGIRASSTAN---LIFEDCRIPKENLL 230
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 261
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168
AI G+DEQ +WLP IGC+ TE HGS+ G+ T AT D+++
Sbjct: 122 AIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATR--SGDDWI----- 174
Query: 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228
LT +K W G V+ AVV+AR D G+ GF+V + PG T I K
Sbjct: 175 LTGTKMWITN-GSVADVAVVWAR-----TDEGIRGFVVP-------TDTPGFTANTIKSK 221
Query: 229 FGNGAYNTMDNGVLRFEHVRIPRNQML 255
A T + L + VR+P + L
Sbjct: 222 MSLRASVTSE---LVLDGVRLPDSARL 245
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 137 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 189
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 190 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 241
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 242 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKTRPVVAA 286
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 287 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 344
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 345 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 383
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G D+Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+ K
Sbjct: 112 GNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN-----GQK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230
W GK + + ++ AR D + + GFIV+ + PGI IG + G
Sbjct: 165 MWITNGGKANWYFLL-ARSDPDPKAPANKAFTGFIVE-------ADTPGIQIGRKELNMG 216
Query: 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290
+T G++ FE V++P+ +L + ++ G R + A
Sbjct: 217 QRCSDT--RGIV-FEDVKVPKENVL------------IGDGAGFKVAMGAFDKERPVVAA 261
Query: 291 DASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA----------- 339
A RA+ AT+Y+ R+ FG E Q I + + + LA
Sbjct: 262 GAVGLAQRALDEATKYALERKTFGKLL--VEHQAISFMLAEMAMKVELARMSYQRAAWEV 319
Query: 340 ---------SAYAFRFVGEWLKWLYTDVTQRLQANDFST 369
++ A F G+ L TD Q L N F+T
Sbjct: 320 DSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNT 358
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 107 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 106 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 161
Query: 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 223
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 162 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVEADT-------PGVQIG 209
Query: 224 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 210 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 254
Query: 284 VRQTIVADASCALSRAVCIATRYSAVRRQFG 314
R + A A RA+ AT+Y+ R+ FG
Sbjct: 255 TRPPVAAGAVGLAQRALDEATKYALERKTFG 285
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 107 VPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166
VP I G G +Q +K+L + ++ Y TE G GS+V G++T A + + DE++I+
Sbjct: 96 VPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKA--EKKGDEYIIN- 151
Query: 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIG 223
K W GK + + ++ AR D + GFIV+ + PG+ IG
Sbjct: 152 ----GQKMWITNGGKANWYFLL-ARSDPDPKAPASKAFTGFIVE-------ADTPGVQIG 199
Query: 224 DIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283
+ G +T G++ FE VR+P+ +L T EG ++ GT
Sbjct: 200 RKEINMGQRCSDT--RGIV-FEDVRVPKENVL------TGEGAGF------KIAMGTFDK 244
Query: 284 VRQTIVADASCALSRAVCIATRYSAVRRQFG 314
R + A A RA+ AT+Y+ R+ FG
Sbjct: 245 TRPPVAAGAVGLAQRALDEATKYALERKTFG 275
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 49/274 (17%)
Query: 86 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 202
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 262
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 321
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355
+ ++ Q +L +L + A +G L LY
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY 351
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+ EQ Q W+ + IGC+A +E G+GS+ TTA + D +V++ +
Sbjct: 103 GSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTAR--AEGDSWVLNGTKAWITN 160
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W ++ AVV+A Q+ ++ F+V + P PG+T+G K G
Sbjct: 161 AWE------ASAAVVFASTDRALQNKSISAFLVPM-------PTPGLTLGKKEDKLGIRG 207
Query: 234 YNTMDNGVLRFEHVRIPRNQML 255
+T + L FE RIP++ +L
Sbjct: 208 SSTAN---LIFEDCRIPKDSIL 226
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 49/274 (17%)
Query: 86 ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145
A + R F +H + + I G++ Q +K+LP ++ + C+A TE +GS+
Sbjct: 123 AEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSD 182
Query: 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGQDHGVN 202
GL TTAT V + K W G ST A +++AR T Q +N
Sbjct: 183 ASGLGTTAT-------KVEGGWKINGQKRWIGN----STFADLLIIFARNTTTNQ---IN 228
Query: 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVT 262
GFIV+ + PG+ I K G + NG + ++V +P L V+
Sbjct: 229 GFIVKKDA-------PGLKATKIPNKIG---LRMVQNGDILLQNVFVPDEDRLPGVNSFQ 278
Query: 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVC-IATRYSAVRRQFGSKNGGPE 321
K ++ V + +VA +S + + RY R+QFG+
Sbjct: 279 DTSK--------------VLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP----- 319
Query: 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355
+ ++ Q +L +L + A +G L LY
Sbjct: 320 --LAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLY 351
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 41/261 (15%)
Query: 113 QGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
+G++E ++ LP E + YA +E GS+ + T A D D+++ L S
Sbjct: 114 RGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVAD--GDDWI-----LNGS 166
Query: 173 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232
K W GK ST V A D +G++ F+V H G T+G K G
Sbjct: 167 KCWITNGGK-STWYTVMAVTDPDKGANGISAFMV-------HKDDEGFTVGPKERKLGIK 218
Query: 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 292
T + L FE+ RIP ++++ + + T+ + R TI A A
Sbjct: 219 GSPTTE---LYFENCRIPGDRIIG------------EPGTGFKTALATLDHTRPTIGAQA 263
Query: 293 SCALSRAVCIATRYSAVRRQFG---SKNGGPETQVID--YKTQQNRLFPLLASAYAFR-- 345
A+ A Y+ R+QFG S N G + + D K + RL A+A A R
Sbjct: 264 VGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGE 323
Query: 346 ----FVGEWLKWLYTDVTQRL 362
F+ K +DV +
Sbjct: 324 GDLGFISAASKCFASDVAMEV 344
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 108 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 162
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 163 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 210
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 211 SLRASAT---GMIIMDGVEVPEENVL 233
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 110 IKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169
I G++EQ QK+LP K E++GC+ TE GS+ +ET A ++ + TL
Sbjct: 106 IYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY-----TL 160
Query: 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF 229
+K W ++ VV+AR +D + GF+++ + G++ I KF
Sbjct: 161 NGTKTWITN-SPMADLFVVWARC----EDGCIRGFLLE-------KGMRGLSAPRIQGKF 208
Query: 230 GNGAYNTMDNGVLRFEHVRIPRNQML 255
A T G++ + V +P +L
Sbjct: 209 SLRASAT---GMIIMDGVEVPEENVL 231
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFD 156
+F + + + +I G++EQ +WLP + IGC+ TE GSN G+ T A D
Sbjct: 105 SFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRD 164
Query: 157 PQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSP 216
+++ L +K W G ++ A V+A+ D G+ GF+V +
Sbjct: 165 --GSDWI-----LNGTKMWITN-GNLADVATVWAQ-----TDDGIRGFLVP-------TD 204
Query: 217 LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
PG T +I K A T + L ++VR+P + L
Sbjct: 205 TPGFTANEIHRKLSLRASVTSE---LVLDNVRLPASAQL 240
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 68/290 (23%)
Query: 101 LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160
LH + P I GT+EQ QKWLP E+I A TE G GS++ + TTA D D
Sbjct: 93 LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKD--GD 150
Query: 161 EFVIHSPTLTSSKWWPGGLGKVSTHA-VVYARLITDGQ----DHGVNGFIVQLRSLEDHS 215
++++ + HA ++ TD Q G++ +V+ +
Sbjct: 151 YYIVNGQKTFITN---------GIHADLIVVACKTDPQAKPPHRGISLLVVERDT----- 196
Query: 216 PLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGK---YVQSNV 272
PG T G K G A +T + L F+ ++P +L EGK Y+ +
Sbjct: 197 --PGFTRGRKLEKVGLHAQDTAE---LFFQDAKVPAYNLL------GEEGKGFYYLMEKL 245
Query: 273 PRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQN 332
++ R + A A + +Y R FG + V +++T Q
Sbjct: 246 QQE---------RLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKR-------VSEFQTVQF 289
Query: 333 RLFPL-----LASAYAFRFVGEWL------------KWLYTDVTQRLQAN 365
RL + L + R + E + KW T++ +R+ A
Sbjct: 290 RLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAE 339
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G++ +K++P E +G + TE GS+V + +TA + + D ++ L SK
Sbjct: 105 GSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTA--EDKGDHWL-----LNGSK 157
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W + + YA G++ F+++ R+ PGI ++ K G+ A
Sbjct: 158 TWISNAAQADV-LIYYAYTDKAAGSRGLSAFVIEPRNF------PGIKTSNL-EKLGSHA 209
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
T G L ++V++P+ +L + R +++G++ + R + A
Sbjct: 210 SPT---GELFLDNVKVPKENILGKPGDGAR------------IVFGSLNHTRLSAAAGGV 254
Query: 294 CALSRAVCIATRYSAVRRQFGSKNG 318
+ A +Y RRQFG G
Sbjct: 255 GLAQACLDAAIKYCNERRQFGKPIG 279
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 42/217 (19%)
Query: 102 HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161
H G+ I G +EQ +K+LPL E + YA TE G GS+ G +TTA + +
Sbjct: 118 HVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTH 177
Query: 162 FVIHSPTLTSSKWWPGGLGKVSTHA-----VVYARLITDGQDHGVNGFIVQLRSLEDHSP 216
+V L K W ++ A +VYA++ DG+ + FIV+ +D++
Sbjct: 178 YV-----LNGEKQW------ITNSAFADVFIVYAKI--DGEH--FSAFIVE----KDYA- 217
Query: 217 LPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQL 276
G++ K G +T L E +P+ +L + + G + N+
Sbjct: 218 --GVSTSPEEKKXGIKCSSTR---TLILEDALVPKENLLGEIGK----GHIIAFNI---- 264
Query: 277 LYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313
+ R + + RAV I+ +Y+ R+QF
Sbjct: 265 ----LNIGRYKLGVGTVGSAKRAVEISAQYANQRQQF 297
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 32/205 (15%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT+EQ +K+LP E I Y TE G GS+ +T AT ++ L K
Sbjct: 125 GTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYI-----LNGVK 179
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W G V+A++ DG+ F+V+ + PG++ G K G A
Sbjct: 180 QWISNAGFAHLF-TVFAKV--DGEHF--TAFLVERDT-------PGLSFGPEEKKMGIKA 227
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
+T + E V++P +L + + G + NV + R + A A
Sbjct: 228 SSTRQ---VILEDVKVPVENVLGEIGK----GHKIAFNV--------LNVGRYKLGAGAV 272
Query: 294 CALSRAVCIATRYSAVRRQFGSKNG 318
RA+ ++ +Y+ R QFG G
Sbjct: 273 GGAKRALELSAQYATQRVQFGRPIG 297
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 116 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 168
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 169 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 200
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 115 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 167
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 168 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 199
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+D Q +K+LP E IGC+ TE HGS+ + T A P +L+ SK
Sbjct: 119 GSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPG-------GYSLSGSK 171
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQ 207
W ++ VV+A+L DG+D + GFI++
Sbjct: 172 MWITN-SPIADVFVVWAKLDEDGRDE-IRGFILE 203
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 119/294 (40%), Gaps = 59/294 (20%)
Query: 42 VASDPAFRK--DNRAMLSRKELFK-NTLRKAA-------YAWKRIIELRLSEEEASMLRS 91
VA D A R+ N A +KELF + +RKAA Y + LS + S++
Sbjct: 29 VAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFE 88
Query: 92 SV-----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNV 146
++ A+ +H M I G +EQ K+ P ME Y TE G GS+
Sbjct: 89 ALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDA 147
Query: 147 QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIV 206
L T+A Q D ++ L SK + G G+ + VV R G G++ +V
Sbjct: 148 ASLLTSA--KKQGDHYI-----LNGSKAFISGAGESDIY-VVMCRTGGPG-PKGISCIVV 198
Query: 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGK 266
+ PG++ G K G +N+ + FE +P +++ EG+
Sbjct: 199 E-------KGTPGLSFGKKEKKVG---WNSQPTRAVIFEDCAVP------VANRIGSEGQ 242
Query: 267 YVQSNVPRQLLYGTMVYVR-----QTIVADASCALSRAVCIATR-YSAVRRQFG 314
G ++ VR + +A S + A I TR + VR+QFG
Sbjct: 243 ------------GFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFG 284
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 179
Query: 174 WW--PGGLGKVSTHAVVYARL-ITD----GQDHGVNGFIVQLRSLEDHSPLPGITIGDIG 226
W GGL + T V+A+ +TD + F+V+ GIT G
Sbjct: 180 LWISNGGLADIFT---VFAKTPVTDPATGAVKEKITAFVVE-------RGFGGITHGPPE 229
Query: 227 MKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 286
K G A NT + + F+ VR+P +L V + ++ +N R
Sbjct: 230 KKMGIKASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRF 274
Query: 287 TIVADASCALSRAVCIATRYSAVRRQFGSK 316
+ A + + + A ++ R QFG K
Sbjct: 275 GMAAALAGTMRGIIAKAVDHATNRTQFGEK 304
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 50/265 (18%)
Query: 114 GTDEQHQKWL-PLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
GT+EQ +++L PL K + +A +E G+GS+ L+T A Q D +V L +
Sbjct: 101 GTEEQKERFLRPLTEK-PALAAFALSEPGNGSDAAALKTRAI--RQGDHYV-----LNGT 152
Query: 173 KWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232
K W G+ + VV+A + + + GV +V+ + PG I K G
Sbjct: 153 KMWISNGGE-AEWVVVFATVNPELRHKGVVALVVERGT-------PGFKAIKIHGKMGQR 204
Query: 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADA 292
A T + L FE V++P +++ EG+ ++ T+ R + A +
Sbjct: 205 ASGTYE---LVFEDVKVPVE------NRLGEEGEGF------KIAMQTLNKTRIPVAAGS 249
Query: 293 SCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLK 352
RA+ A +Y+ R FG + +++ Q +L +L R +
Sbjct: 250 VGVARRALDEARKYAKEREAFGEP-------IANFQAIQFKLVDMLIGIETARMYTYYAA 302
Query: 353 WLYTDVTQRLQANDFSTLPEAHACT 377
WL LP AHA
Sbjct: 303 WLAD-----------QGLPHAHASA 316
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT Q +K+LP E + + TE GS+ + T+A P + TL SK
Sbjct: 145 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYY-----TLNGSK 199
Query: 174 WW--PGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231
W GGL + T V+A+ T D ++ + GIT G K G
Sbjct: 200 LWISNGGLADIFT---VFAK--TPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGI 254
Query: 232 GAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291
A NT + + F+ VR+P +L V + ++ +N R + A
Sbjct: 255 KASNTAE---VFFDGVRVPSENVLGEVGSGFKVAMHILNN------------GRFGMAAA 299
Query: 292 ASCALSRAVCIATRYSAVRRQFGSK 316
+ + + A ++ R QFG K
Sbjct: 300 LAGTMRGIIAKAVDHATNRTQFGEK 324
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
GT+EQ ++WLP E IG Y+ +E GS+ L AT P +VI+ SK
Sbjct: 112 GTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAAT--PTDGGYVIN-----GSK 164
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
W GK + ++AR T GV+ F+V + PG++ G K G A
Sbjct: 165 SWITHGGKADFY-TLFAR--TGEGSRGVSCFLVP-------ADQPGLSFGKPEEKMGLHA 214
Query: 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADAS 293
T +++ RI ++ ++ EG+ + Q+ + + R I A A+
Sbjct: 215 VPTTSA---FYDNARIDADR------RIGEEGQGL------QIAFSALDSGRLGIAAVAT 259
Query: 294 CALSRAVCIATRYSAVRRQFGSK 316
A+ A Y+ R FG K
Sbjct: 260 GLAQAALDEAVAYANERTAFGRK 282
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 34/220 (15%)
Query: 102 HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161
H + + + G + Q +K+LP E IG A +E GS+V ++ A + + +
Sbjct: 100 HSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKA--EKKGNH 157
Query: 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYAR--LITDGQDHGVNGFIVQLRSLEDHSPLPG 219
++ L +K+W G + +VYA+ L G+ FIV+ +PG
Sbjct: 158 YI-----LNGNKFWITN-GPDADVLIVYAKTDLAAVPASRGITAFIVE-------KGMPG 204
Query: 220 ITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYG 279
+ K G NT + L FE +IP +L +G YV L+ G
Sbjct: 205 FSTSKKLDKLGMRGSNTCE---LIFEDCKIPAANILGH----ENKGVYV-------LMSG 250
Query: 280 TMVYVRQTIVADASCALSRAVCIAT-RYSAVRRQFGSKNG 318
+ + + ++A L +AV T Y VR FG K G
Sbjct: 251 --LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIG 288
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG-LETTATF 155
+F + + + I G++EQ +++LP + E++GC+ TE GS+ G ++T A
Sbjct: 91 SFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRAR- 149
Query: 156 DPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHG--VNGFIVQLRSLED 213
+ D +V L +K W G ++ AV++A+ D G V GF+V +
Sbjct: 150 -REGDTWV-----LNGTKMWITN-GNLAHLAVIWAK------DEGGEVLGFLVPTDT--- 193
Query: 214 HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
PG ++ K A T + L E VR+P + L
Sbjct: 194 ----PGFQAREVKRKMSLRASVTSE---LVLEEVRVPESLRL 228
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSK 173
G+ EQ + WL + +I + TE S+ AT + DE VI+ K
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASS-DATNMAATAVVEGDEVVING-----RK 178
Query: 174 WWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233
WW G+G +++ L TD H + L ++ PGIT+ M G
Sbjct: 179 WWSTGVGHPDCKVIIFMGL-TDPNAHRYARHSMVLVPMDT----PGITVER--MLPTMGF 231
Query: 234 YNTM-DNGVLRFEHVRIPRNQML 255
Y+ +GV+ F++VR+P + +
Sbjct: 232 YDEPGGHGVVSFDNVRLPADAFI 254
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 104 GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFV 163
G+ +P I G+D ++++ ++IG TE G GS+V L T A + D +V
Sbjct: 117 GIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAV--REGDTYV 174
Query: 164 IHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGF-IVQLRSLEDHSPLPGITI 222
++ K + V A +T G G+ V L ++ +S PG
Sbjct: 175 VNGA-------------KTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNS--PGF-- 217
Query: 223 GDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQML 255
++ + + D L F VR+P + ++
Sbjct: 218 -EVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172
G++EQ ++WL + I C+ TE S+ +E + D D +VI+
Sbjct: 131 GSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRD--EDSYVIN-----GK 183
Query: 173 KWWPGGLGKVSTH-AVVYAR 191
KWW G G A+V R
Sbjct: 184 KWWSSGAGNPKCKIAIVLGR 203
>pdb|1EV1|1 Chain 1, Echovirus 1
Length = 281
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 217 LPGITIGDIGMKFGNG----------AYNTMDN-GVLRFEHVRIPRNQMLMRVSQVTREG 265
+P I+IG+ F +G + T++N G L F HV P + V+++ +
Sbjct: 183 IPFISIGNAYSNFYDGWSHFSQAGVYGFTTLNNMGQLFFRHVNKPNPAAITSVARIYFKP 242
Query: 266 KYVQSNVPR 274
K+V++ VPR
Sbjct: 243 KHVRAWVPR 251
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 114 GTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153
G++ Q + +LP E +G + TE G GS+ L+T A
Sbjct: 104 GSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKA 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,439,871
Number of Sequences: 62578
Number of extensions: 465428
Number of successful extensions: 922
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 37
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)