Query 016297
Match_columns 392
No_of_seqs 319 out of 2165
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02443 acyl-coenzyme A oxida 100.0 2.2E-62 4.8E-67 503.3 41.5 392 1-392 1-392 (664)
2 PTZ00460 acyl-CoA dehydrogenas 100.0 2E-61 4.4E-66 495.5 39.5 379 5-392 2-383 (646)
3 cd01150 AXO Peroxisomal acyl-C 100.0 2.5E-57 5.4E-62 465.7 40.0 385 5-392 1-396 (610)
4 PLN02312 acyl-CoA oxidase 100.0 4.3E-57 9.3E-62 465.4 37.3 365 11-392 46-439 (680)
5 PLN02636 acyl-coenzyme A oxida 100.0 3.8E-55 8.2E-60 451.9 37.6 365 12-392 48-437 (686)
6 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1.6E-55 3.5E-60 420.0 29.9 379 4-392 18-416 (661)
7 KOG0139 Short-chain acyl-CoA d 100.0 2.3E-57 4.9E-62 411.8 16.3 306 27-391 37-361 (398)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 1.3E-55 2.9E-60 394.1 18.4 310 25-390 39-369 (421)
9 KOG0136 Acyl-CoA oxidase [Lipi 100.0 3E-53 6.5E-58 413.4 30.8 385 4-392 10-400 (670)
10 KOG0140 Medium-chain acyl-CoA 100.0 7.4E-54 1.6E-58 382.7 16.2 308 25-391 26-355 (408)
11 TIGR03203 pimD_small pimeloyl- 100.0 6.8E-50 1.5E-54 391.4 25.2 309 26-391 3-329 (378)
12 PRK03354 crotonobetainyl-CoA d 100.0 1.3E-45 2.9E-50 361.9 27.3 309 26-392 4-329 (380)
13 TIGR03204 pimC_large pimeloyl- 100.0 1.3E-45 2.9E-50 363.2 25.9 308 26-391 3-331 (395)
14 cd01160 LCAD Long chain acyl-C 100.0 2.5E-45 5.5E-50 359.1 27.6 305 29-391 1-324 (372)
15 cd01157 MCAD Medium chain acyl 100.0 2.8E-45 6E-50 359.6 27.3 307 28-392 2-329 (378)
16 cd01162 IBD Isobutyryl-CoA deh 100.0 2.7E-45 5.8E-50 359.3 27.1 306 28-392 2-326 (375)
17 cd01161 VLCAD Very long chain 100.0 2.1E-45 4.5E-50 363.9 26.3 311 26-392 26-358 (409)
18 cd01156 IVD Isovaleryl-CoA deh 100.0 3.4E-45 7.4E-50 358.7 27.5 306 28-391 3-327 (376)
19 cd01151 GCD Glutaryl-CoA dehyd 100.0 3.7E-45 7.9E-50 359.6 27.6 304 26-391 12-333 (386)
20 PRK12341 putative acyl-CoA deh 100.0 6.6E-45 1.4E-49 357.2 27.3 307 26-391 4-329 (381)
21 PLN02519 isovaleryl-CoA dehydr 100.0 6.4E-45 1.4E-49 359.7 27.3 311 25-391 24-353 (404)
22 PRK09463 fadE acyl-CoA dehydro 100.0 2.7E-45 5.9E-50 379.6 25.7 329 8-392 58-422 (777)
23 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 6.5E-45 1.4E-49 356.2 27.0 306 28-392 2-326 (372)
24 PTZ00461 isovaleryl-CoA dehydr 100.0 2.2E-44 4.8E-49 356.5 26.8 304 26-391 36-358 (410)
25 PLN02526 acyl-coenzyme A oxida 100.0 3.4E-44 7.4E-49 355.1 26.7 304 26-391 28-349 (412)
26 PRK13026 acyl-CoA dehydrogenas 100.0 8.4E-44 1.8E-48 367.2 26.3 277 67-391 108-420 (774)
27 cd01158 SCAD_SBCAD Short chain 100.0 1.5E-42 3.3E-47 339.6 26.6 305 29-391 1-324 (373)
28 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.5E-42 3.3E-47 341.8 26.8 312 31-392 3-346 (394)
29 KOG0138 Glutaryl-CoA dehydroge 100.0 2E-42 4.3E-47 308.7 19.9 284 27-358 55-356 (432)
30 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.8E-41 3.9E-46 334.3 25.7 308 29-391 7-339 (393)
31 PLN02876 acyl-CoA dehydrogenas 100.0 3.2E-41 6.9E-46 359.2 26.0 317 25-391 400-769 (822)
32 cd00567 ACAD Acyl-CoA dehydrog 100.0 4.2E-40 9E-45 316.5 25.4 282 29-392 1-283 (327)
33 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.2E-40 4.7E-45 325.1 22.1 305 29-392 1-324 (380)
34 cd01153 ACAD_fadE5 Putative ac 100.0 8.4E-40 1.8E-44 323.5 26.0 296 70-392 39-359 (407)
35 PTZ00456 acyl-CoA dehydrogenas 100.0 5.4E-39 1.2E-43 329.1 27.1 292 71-391 103-430 (622)
36 KOG0137 Very-long-chain acyl-C 100.0 3.6E-40 7.8E-45 318.0 16.0 278 69-391 111-411 (634)
37 cd01154 AidB Proteins involved 100.0 7.5E-39 1.6E-43 317.3 25.3 281 70-391 68-369 (418)
38 cd01163 DszC Dibenzothiophene 100.0 3.8E-38 8.2E-43 308.9 25.6 283 68-391 23-325 (377)
39 PRK11561 isovaleryl CoA dehydr 100.0 7.2E-37 1.6E-41 307.1 23.3 241 105-391 139-392 (538)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 7.8E-35 1.7E-39 290.5 25.4 247 71-391 54-330 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 3.3E-32 7.1E-37 266.3 22.3 277 68-391 23-320 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 4.9E-32 1.1E-36 238.9 16.0 237 108-391 90-333 (392)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.8 1E-19 2.2E-24 181.5 19.5 234 111-391 119-377 (477)
44 PF02770 Acyl-CoA_dh_M: Acyl-C 99.5 6.5E-14 1.4E-18 96.5 5.2 51 134-192 1-51 (52)
45 PF14749 Acyl-CoA_ox_N: Acyl-c 99.3 9.3E-12 2E-16 102.6 10.5 116 17-132 1-125 (125)
46 PF00441 Acyl-CoA_dh_1: Acyl-C 99.3 2.5E-11 5.5E-16 102.9 10.0 97 276-391 6-102 (150)
47 PF02771 Acyl-CoA_dh_N: Acyl-C 98.9 5.2E-10 1.1E-14 90.2 3.2 94 28-130 1-113 (113)
48 PF08028 Acyl-CoA_dh_2: Acyl-C 98.7 2.7E-07 5.9E-12 76.8 11.8 96 286-392 1-98 (134)
49 COG2368 Aromatic ring hydroxyl 98.4 1.3E-05 2.8E-10 78.3 17.6 204 113-354 125-354 (493)
50 TIGR02310 HpaB-2 4-hydroxyphen 98.3 4.1E-05 9E-10 77.0 17.8 199 119-353 138-357 (519)
51 PF11794 HpaB_N: 4-hydroxyphen 97.6 0.00044 9.6E-09 63.8 10.4 124 118-255 124-263 (264)
52 PTZ00457 acyl-CoA dehydrogenas 85.7 4 8.8E-05 41.8 8.7 57 323-390 432-488 (520)
53 KOG0137 Very-long-chain acyl-C 59.4 64 0.0014 33.2 9.1 57 323-390 536-592 (634)
54 PF03241 HpaB: 4-hydroxyphenyl 45.2 33 0.00072 30.5 4.3 60 324-390 44-103 (205)
No 1
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.2e-62 Score=503.31 Aligned_cols=392 Identities=88% Similarity=1.368 Sum_probs=341.6
Q ss_pred CCCccchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcC
Q 016297 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (392)
Q Consensus 1 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG 80 (392)
|.+++||+.||++++||+++|+.+|+|+++..+.+..+++++.++|+|...+....++++.++........+.+.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999989999999999999999987655568899999888888788888888999
Q ss_pred CCHHHHHHHhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCC
Q 016297 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (392)
Q Consensus 81 ~~e~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~ 160 (392)
|..+.......+++.+.++.+|+.+++++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|+|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 97654444444556666778888899999999999999999999999999999999999999999999999999998788
Q ss_pred eEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCce
Q 016297 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (392)
Q Consensus 161 ~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~ 240 (392)
+|+||||+++|+|+|+++++..|++++|+|++..+++++|+++||||+|+.+++...|||++++.++|+|.+++++.+++
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999844789999999998766667899999999998888888999999999999993323458899
Q ss_pred eEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC
Q 016297 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (392)
Q Consensus 241 ~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~ 320 (392)
.|.|+||+||++++|++.+.++++|.++.......+....+..+|+.+++.++|++++|++++++|+++|+|||++++.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 99999999999999998887777888876444333667888999999999999999999999999999999999977766
Q ss_pred CccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 321 ~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
|.++.+||.+|++|+++++.+++++++.+++++.+++....+..++....++.+..++++|+++++.+.+++
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i 392 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGI 392 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999988654333322322235678889999999999998764
No 2
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-61 Score=495.48 Aligned_cols=379 Identities=39% Similarity=0.647 Sum_probs=320.0
Q ss_pred cchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 016297 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDN-RAMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (392)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~e 83 (392)
++|++||++++||+++|..+|+|++++.+.+..+++++.++|.|...+ ....++++.++........+.+.+ + ++
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~---~-~~ 77 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHL---N-LA 77 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHc---C-ch
Confidence 689999999999999999999999999999999999999999998652 245789998887766655554442 2 22
Q ss_pred HHHHHHhhhc--CCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCe
Q 016297 84 EEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (392)
Q Consensus 84 ~~gg~~~~~~--~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~ 161 (392)
+..-....++ ..+.++.+|.++++.+|..+||++|+++|||++.+|++++|||+|||++|||+.+++|+|++|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~de 157 (646)
T PTZ00460 78 NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNE 157 (646)
T ss_pred hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCE
Confidence 2111111122 34456778888999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCcee
Q 016297 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (392)
Q Consensus 162 ~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~ 241 (392)
|+||||+++|+|+|+++.+..||+++|+||+..+++++|+++|+||+||.+++.+.|||++++.++++| +++.+++.
T Consensus 158 fvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~ 234 (646)
T PTZ00460 158 FVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGF 234 (646)
T ss_pred EEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceE
Confidence 999999999999999974689999999999976666789999999999877778899999999999999 99999999
Q ss_pred EEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCC
Q 016297 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (392)
Q Consensus 242 v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~ 321 (392)
|.|+||+||++++||+.+.+.++|.+....... ..+..+..+|+.+++.++|++++|++++++|+++|+|||++. ++|
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~-~~E 312 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDN-KQE 312 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC-CCC
Confidence 999999999999999877776677654332222 567788899999999999999999999999999999999754 448
Q ss_pred ccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 322 ~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
.||++||++|++|++|++.+++++++++++++.+++........+....++.+..++++|+++++.+.+++
T Consensus 313 ~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~ 383 (646)
T PTZ00460 313 NSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCA 383 (646)
T ss_pred CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998765433222222224578899999999999998763
No 3
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=2.5e-57 Score=465.69 Aligned_cols=385 Identities=46% Similarity=0.743 Sum_probs=316.0
Q ss_pred cchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCC-ccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-
Q 016297 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLS- 82 (392)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~- 82 (392)
+||..||++++||+++|+.+++|.++....+..+.+++.++|.|... .....+|++.++............+.++++.
T Consensus 1 ~~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (610)
T cd01150 1 PDLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADD 80 (610)
T ss_pred ChhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 48999999999999999999999888889999999999999998764 2234566666655544444555555666762
Q ss_pred -HHHHHH----HhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeC
Q 016297 83 -EEEASM----LRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (392)
Q Consensus 83 -e~~gg~----~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~ 157 (392)
.+..-. +......+.++.+|+++++++|..+||++|+++|||++.+|++++||++|||++|||+.+++|+|++++
T Consensus 81 ~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~ 160 (610)
T cd01150 81 PEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDP 160 (610)
T ss_pred HHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECC
Confidence 221111 111112234567888899999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCC
Q 016297 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 237 (392)
Q Consensus 158 ~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~ 237 (392)
..++|+||||+.+|+|+|++|.+..|++++|+|++..+++++|+++|+||+|+.+++.+.|||++++.++++| +++.
T Consensus 161 ~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~ 237 (610)
T cd01150 161 LTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGV 237 (610)
T ss_pred CCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCC
Confidence 5589999999999999999984456999999999876666689999999999877777889999999999999 9999
Q ss_pred CceeEEecceecCcccccccccccCCCCeEEecCc-hh---hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016297 238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (392)
Q Consensus 238 ~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~-~~---~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qf 313 (392)
+++.|.|+||+||++++|++.+.+.++|.+..... +. ..+...+..+|+.+++.++|.+++|++++++|++.|+||
T Consensus 238 dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qf 317 (610)
T cd01150 238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQF 317 (610)
T ss_pred CeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeec
Confidence 99999999999999999999888888888776432 11 145667788999999999999999999999999999999
Q ss_pred CCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 314 G~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
|++.+++|.||++||.+|++|+++++.+++.+....++...+.........++....++.+..++++|+++++.+.+++
T Consensus 318 g~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~ 396 (610)
T cd01150 318 GPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGI 396 (610)
T ss_pred CCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987788999999999999999999999999877777665554433222222222235678999999999999998764
No 4
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=4.3e-57 Score=465.36 Aligned_cols=365 Identities=33% Similarity=0.550 Sum_probs=301.9
Q ss_pred hccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCC---------ccccCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 016297 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (392)
Q Consensus 11 r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~ 81 (392)
..+++||+++|+.+|+| ++.++|+++++++.++|.|... +....++++..+. ..+.|+.+.++|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREI----TMKRILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHh----HHHHHHHHHHhhh
Confidence 67999999999999998 5578899999999999988643 2233466665543 3466777877774
Q ss_pred -----CHHHHH-HH--------hhhcCC--chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCC
Q 016297 82 -----SEEEAS-ML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145 (392)
Q Consensus 82 -----~e~~gg-~~--------~~~~~~--~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd 145 (392)
||+..+ .. .+..+. +.++.+|+++++.+|..+||++||++|||++.+|++++|||+|||++|||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 443211 11 111122 23467788899999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEecc
Q 016297 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 225 (392)
Q Consensus 146 ~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~ 225 (392)
+.+++|||++|+++|+|+||||+++|+|+||+|++..|++++|+||+..+++++|+++|+||+|+.++ ...|||++++.
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999998767899999999999999999933799999999999766667899999999887532 45899999999
Q ss_pred CCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCc---hh-hHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016297 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PR-QLLYGTMVYVRQTIVADASCALSRAVC 301 (392)
Q Consensus 226 ~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~---~~-~~~~~~l~~~r~~~aa~~~G~~~~al~ 301 (392)
++|+| +++.+++.|.|+||+||++++|++.+.|.++|.+..+.. .. ..++..+..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999888888898876321 11 134678899999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHH
Q 016297 302 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381 (392)
Q Consensus 302 ~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK 381 (392)
++++|+++|+|||++++++|.||++||.+|++|++|++.+++++..+.++.+.+++.. .....+.+..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~-------~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRT-------PESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccccchhHHHHHHHH
Confidence 9999999999999877777889999999999999999999998887777776664321 111246788999999
Q ss_pred HHhHHHHhhhC
Q 016297 382 SLTTTATAVCY 392 (392)
Q Consensus 382 ~~~~~~a~~~i 392 (392)
+++++.+.+++
T Consensus 429 a~~t~~a~~~~ 439 (680)
T PLN02312 429 AVLTWHNMRTL 439 (680)
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 5
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.8e-55 Score=451.92 Aligned_cols=365 Identities=35% Similarity=0.561 Sum_probs=292.7
Q ss_pred ccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHH-HHHHHHHHHcCC-----CHHH
Q 016297 12 KKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKA-AYAWKRIIELRL-----SEEE 85 (392)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~l~~lG~-----~e~~ 85 (392)
++++||+++|+.++++ ++.++++++++|+.+++.|..+. ....++.. .+. .++|+.+.++|+ |++.
T Consensus 48 ~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~--~~~~~~~~----e~~~~~l~~~~~~~g~~~~~~~~~~ 119 (686)
T PLN02636 48 IKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPV--EISKDEHR----ELCMRQLTGLVREAGIRPMKYLVED 119 (686)
T ss_pred ccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCc--hhhHHHhh----hhHHHHHHHHHHhcCccccccccCC
Confidence 4899999999999986 45789999999999998663321 11122211 122 567778888887 3221
Q ss_pred HH-H-------HhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeC
Q 016297 86 AS-M-------LRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (392)
Q Consensus 86 gg-~-------~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~ 157 (392)
.. . +......+.++.+|+++++.+|..+||++||++|||++.+|++++|||+|||++|||+.+++|+|++|+
T Consensus 120 ~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~ 199 (686)
T PLN02636 120 PAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDP 199 (686)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcC
Confidence 11 0 111112234567888899999999999999999999999999999999999999999999999999997
Q ss_pred CCCeEEEecCCCCcceeccCCCCC-CCcEEEEEEEEccC------CCCCceEEEEEeeccCCCCCCCCCeEEeccCCccc
Q 016297 158 QTDEFVIHSPTLTSSKWWPGGLGK-VSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFG 230 (392)
Q Consensus 158 ~~~~~~Ln~p~~~G~K~~v~~~a~-~Ad~~~V~A~~~~~------~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G 230 (392)
.+|+|+||||+++|+|+||+| +. .||+++|+|++... ++++|+++||||+++.+++...|||++.+.++|+|
T Consensus 200 ~~defVLntP~~~g~K~wI~n-a~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G 278 (686)
T PLN02636 200 LTDEFVINTPNDGAIKWWIGN-AAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG 278 (686)
T ss_pred CCCeEEECCCCCCeEEEeecC-CcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC
Confidence 778999999999999999999 64 59999999998632 13579999999999888888899999999999999
Q ss_pred CCccCCCCceeEEecceecCcccccccccccCCCCeEEecCc--hh--hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016297 231 NGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV--PR--QLLYGTMVYVRQTIVADASCALSRAVCIATRY 306 (392)
Q Consensus 231 ~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~--~~--~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y 306 (392)
+++.+++.|.||||+||++++|++.+.+.++|.+....- .. ..++..|..+|+.+++.++|++++|++++++|
T Consensus 279 ---~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrY 355 (686)
T PLN02636 279 ---LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRY 355 (686)
T ss_pred ---CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887777787765211 11 15678899999999999999999999999999
Q ss_pred hhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHH
Q 016297 307 SAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTT 386 (392)
Q Consensus 307 ~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~ 386 (392)
+++|+|||++ +++|.||++||.+|++|++|++.+++++.+...+.+.+..... .++.....+.+..++++|+++++
T Consensus 356 a~~R~qFg~p-~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~ 431 (686)
T PLN02636 356 SLLRQQFGPP-KQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITS 431 (686)
T ss_pred HHcCEeCCCC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHH
Confidence 9999999984 3467889999999999999999999987666655554443221 11211224678999999999999
Q ss_pred HHhhhC
Q 016297 387 ATAVCY 392 (392)
Q Consensus 387 ~a~~~i 392 (392)
.+.+++
T Consensus 432 ~a~~~~ 437 (686)
T PLN02636 432 YTAKAL 437 (686)
T ss_pred HHHHHH
Confidence 998763
No 6
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-55 Score=420.02 Aligned_cols=379 Identities=38% Similarity=0.606 Sum_probs=329.3
Q ss_pred ccchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 016297 4 VDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (392)
Q Consensus 4 ~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~e 83 (392)
+.+|.+||+++.|||++|+.+++|.++..+++..+.+.++++|.+...+....+.+++++.. ...|+.|.++|.++
T Consensus 18 ~~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~----~~r~~~l~~~gv~~ 93 (661)
T KOG0135|consen 18 SSPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELC----MKRIKRLVELGVFK 93 (661)
T ss_pred CCCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHH----HHHHHHHHHhccCc
Confidence 35679999999999999999999954589999999999999995544444455667666543 45566777777632
Q ss_pred HH-----HH------H---HhhhcCC--chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcC
Q 016297 84 EE-----AS------M---LRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQ 147 (392)
Q Consensus 84 ~~-----gg------~---~~~~~~~--~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~ 147 (392)
.. .. . -.++.+. +.-+.+|+.+++.++..+||+.+++ |+.++-+-++++|||+||.+||||..
T Consensus 94 ~~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~ 172 (661)
T KOG0135|consen 94 FWLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTK 172 (661)
T ss_pred ceeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCcccc
Confidence 11 00 0 1222332 4557899999999999999998877 99999999999999999999999999
Q ss_pred CCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCC
Q 016297 148 GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM 227 (392)
Q Consensus 148 ~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~ 227 (392)
+|+|+|++||..++||||||+++..|+||+|++.+|++.+|+|+...++.++|++.|+|++||+++....|||.|.++..
T Consensus 173 ~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~ 252 (661)
T KOG0135|consen 173 GIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGH 252 (661)
T ss_pred ceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceeccccc
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred cccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchh-h---HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016297 228 KFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPR-Q---LLYGTMVYVRQTIVADASCALSRAVCIA 303 (392)
Q Consensus 228 ~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~-~---~~~~~l~~~r~~~aa~~~G~~~~al~~a 303 (392)
|.| ++|.|++.+.|+|||||++++|.+.+++.++|.|..+.-+. + ...+.|..+|+.++..++|.++-++.+|
T Consensus 253 K~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIA 329 (661)
T KOG0135|consen 253 KIG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIA 329 (661)
T ss_pred ccc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999999998743211 1 3567888999999999999999999999
Q ss_pred HHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHH
Q 016297 304 TRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSL 383 (392)
Q Consensus 304 ~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~ 383 (392)
++|+..|+|||++...+|+||.+||..|+||.++++..++.+....++...+.+...+..++.. ..++|+.++.+|++
T Consensus 330 IRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~ 407 (661)
T KOG0135|consen 330 IRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPV 407 (661)
T ss_pred hhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchh
Confidence 9999999999998877999999999999999999999999999999999999887655543332 47899999999999
Q ss_pred hHHHHhhhC
Q 016297 384 TTTATAVCY 392 (392)
Q Consensus 384 ~~~~a~~~i 392 (392)
++|...+++
T Consensus 408 ~TW~~~~~L 416 (661)
T KOG0135|consen 408 ATWHNMRAL 416 (661)
T ss_pred hhHhhHHHH
Confidence 999988764
No 7
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-57 Score=411.80 Aligned_cols=306 Identities=23% Similarity=0.282 Sum_probs=267.8
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC------
Q 016297 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------ 95 (392)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------ 95 (392)
.+|++.++++++|+|..+.-. +. -+..+....+.....+.+.++|+ ||++||.|..++..
T Consensus 37 l~E~e~~l~~tvrkfa~~~i~-Pl--------v~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EE 107 (398)
T KOG0139|consen 37 LSETEQMLQKTVRKFAQEEIK-PL--------VREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEE 107 (398)
T ss_pred cCcHHHHHHHHHHHHHHHhcc-hH--------HHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHH
Confidence 458889999999999886531 11 11122223344567888999998 89999999776432
Q ss_pred --------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecC
Q 016297 96 --------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (392)
Q Consensus 96 --------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p 167 (392)
++...+|+.+..++|..+||+|||+.|+|.+ .|+.+++||++||++|||+..++|+|+++ ||.|+||
T Consensus 108 isk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN-- 182 (398)
T KOG0139|consen 108 ISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN-- 182 (398)
T ss_pred HhccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe--
Confidence 4456678889999999999999999888875 77889999999999999999999999988 8999999
Q ss_pred CCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecce
Q 016297 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (392)
Q Consensus 168 ~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v 247 (392)
|+|.|||| +..|++++|+|.++...+.+|+++|+|| ++.||+++....+|+| +|+++++.++|+||
T Consensus 183 ---GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedV 248 (398)
T KOG0139|consen 183 ---GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDV 248 (398)
T ss_pred ---cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEeccc
Confidence 99999999 9999999999999776677899999999 7999999999999999 99999999999999
Q ss_pred ecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 016297 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (392)
Q Consensus 248 ~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~ 327 (392)
+||++++||+ .|.++. +.+..|+-+|+.++|.++|.++.|++.++.|+++|.|||+ +|.+|
T Consensus 249 rVpks~IlGe------~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~ 309 (398)
T KOG0139|consen 249 RVPKSSILGE------YGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDF 309 (398)
T ss_pred cccchhhccc------CCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhH
Confidence 9999999996 577776 6778889999999999999999999999999999999999 99999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 328 q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
|.+||+||++..++|++|+++|+++++-+.+ ......+++||.++++.|..+
T Consensus 310 Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G------------~pf~keAAMAKl~ase~A~~~ 361 (398)
T KOG0139|consen 310 QGLQHQIADMATEIEAARLLVYNAARMKDQG------------LPFVKEAAMAKLYASEVATKT 361 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CchHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999988764 235567899999999988653
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=394.09 Aligned_cols=310 Identities=22% Similarity=0.305 Sum_probs=266.1
Q ss_pred hcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC----
Q 016297 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE---- 95 (392)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~---- 95 (392)
+-.+|||..||+++++|+.++-.... ..+++...++ ..+.+|+.++++|+ ||++||.|.++++.
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~~----~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivm 111 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHA---SEIDKANEFK----DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVM 111 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCcc----hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHH
Confidence 34679999999999999998753211 1222222222 24678999999987 79999999886543
Q ss_pred ----------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEe
Q 016297 96 ----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (392)
Q Consensus 96 ----------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln 165 (392)
...|..|+++|..-|.+.|++||+++|||++.+|+.++++|+|||++|||+.++++.|+++ |++|+||
T Consensus 112 EE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiLN 189 (421)
T KOG0141|consen 112 EEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYILN 189 (421)
T ss_pred HHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEEec
Confidence 3457889999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred cCCCCcceeccCCCCCCCcEEEEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEE
Q 016297 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (392)
Q Consensus 166 ~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~--~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~ 243 (392)
|+|.|||| +..||.++|.|+|+.. ...+|+++|||+ +..||++..+..+|+| ||+++++++.
T Consensus 190 -----GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKlG---mrgsdTcELv 253 (421)
T KOG0141|consen 190 -----GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKLG---MRGSDTCELV 253 (421)
T ss_pred -----CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhhc---CCCCcchhee
Confidence 99999999 9999999999999875 456899999999 8999999999999999 9999999999
Q ss_pred ecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCcc
Q 016297 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (392)
Q Consensus 244 f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~ 323 (392)
|+|++||++++||. .+.++- +++..|+..|+.+++..+|.++.+++.+..|+++|++||+ +
T Consensus 254 Fed~~vpas~ilg~------enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk-------~ 314 (421)
T KOG0141|consen 254 FEDCKVPASNILGE------ENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK-------K 314 (421)
T ss_pred hhhccCcHHHhcCc------CCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC-------c
Confidence 99999999999996 455443 4567788899999999999999999999999999999999 9
Q ss_pred ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhh
Q 016297 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAV 390 (392)
Q Consensus 324 i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~ 390 (392)
|++||.+|++||||+..+.+.|+.+|..+...|..- .....++.++.+++|.+.+
T Consensus 315 ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~------------~~~kdcag~il~aaE~~tq 369 (421)
T KOG0141|consen 315 IGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGN------------VDPKDCAGVILYAAEKATQ 369 (421)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCC------------CChhhhhhhhhhHhhhhHH
Confidence 999999999999999999999999999998887641 1123466777777765543
No 9
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-53 Score=413.39 Aligned_cols=385 Identities=55% Similarity=0.864 Sum_probs=351.8
Q ss_pred ccchHHHhccCCCCHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 016297 4 VDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS 82 (392)
Q Consensus 4 ~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~ 82 (392)
-+||++||.+++||+++|..+|+|++|....+.++++.+.++|.|. ..+....++++..+.........++.+.++++.
T Consensus 10 Npdl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el~~~ 89 (670)
T KOG0136|consen 10 NPDLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMRELQDN 89 (670)
T ss_pred ChHHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999999999988 445577889999888877777788888887774
Q ss_pred HH-----HHHHHhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeC
Q 016297 83 EE-----EASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (392)
Q Consensus 83 e~-----~gg~~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~ 157 (392)
.. .+.....+...+.|+.+|.++|..+|..-||+||.++||++.-+.++++|+|.||.+||+++.+++|+|++|+
T Consensus 90 ~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~ 169 (670)
T KOG0136|consen 90 TDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDP 169 (670)
T ss_pred CcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecC
Confidence 22 2222334455577899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCC
Q 016297 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM 237 (392)
Q Consensus 158 ~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~ 237 (392)
..++|+||||+....|||.+++++.|.+.+|.|++...+.+.|++.|+||+||.+++.+.|||+|+++.+||| .++.
T Consensus 170 ~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ng~ 246 (670)
T KOG0136|consen 170 KTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---FNGV 246 (670)
T ss_pred CcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---ccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 016297 238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN 317 (392)
Q Consensus 238 ~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~ 317 (392)
+++.+-|+|||||++++|-+...+.++|.+..+..+. .....+...|..++....-....|+.+|++|+..|+|+.-.+
T Consensus 247 dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~p 325 (670)
T KOG0136|consen 247 DNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRP 325 (670)
T ss_pred ccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999998866554 677778888888888888889999999999999999999889
Q ss_pred CCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 318 ~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
+.+|..|.+||..|+||.+.++..++.+....+..+.+......+..++....+++|+.++..|+++++.+.++|
T Consensus 326 g~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GI 400 (670)
T KOG0136|consen 326 GQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGI 400 (670)
T ss_pred CCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHH
Confidence 999999999999999999999999999999999999999988888877777789999999999999999987764
No 10
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.4e-54 Score=382.68 Aligned_cols=308 Identities=22% Similarity=0.279 Sum_probs=265.9
Q ss_pred hcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCCc---
Q 016297 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDEP--- 96 (392)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~~--- 96 (392)
+..+++|.++++.+++|..+.-.... ...+.... ++..+.+.-.++|+ ||++||.|++-++.+
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~P~a---ae~Dk~ge------~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~ 96 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMIPNA---AEYDKSGE------FPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIF 96 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhccch---hhhcccCC------CcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHH
Confidence 46678999999999999887643111 11222222 23344455567887 899999998755431
Q ss_pred -----------hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEe
Q 016297 97 -----------AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (392)
Q Consensus 97 -----------~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln 165 (392)
..+..| +++.++|..+|++|||++||++++...++++.++|||++|||+.+++|+|++. ||.|+||
T Consensus 97 E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN 173 (408)
T KOG0140|consen 97 EALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN 173 (408)
T ss_pred HHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc
Confidence 123334 58899999999999999999999999999999999999999999999999977 9999999
Q ss_pred cCCCCcceeccCCCCCCCcEEEEEEEEccC---CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeE
Q 016297 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD---GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (392)
Q Consensus 166 ~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~---~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v 242 (392)
|+|.|||| +.+|+|++|+||++++ +..++++.|+|+ .+.||++.+....+|| +|.+++-.|
T Consensus 174 -----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~i 237 (408)
T KOG0140|consen 174 -----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRGI 237 (408)
T ss_pred -----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCcee
Confidence 99999999 9999999999999886 455789999999 8999999999999999 999999999
Q ss_pred EecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCc
Q 016297 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (392)
Q Consensus 243 ~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~ 322 (392)
+|+||+||.+++||. +|.++. +.++.|+..|..+++.++|.++++|+.+.+|+.+|++||.
T Consensus 238 tFEDvrVP~~Nvlg~------~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~------- 298 (408)
T KOG0140|consen 238 TFEDVRVPKENVLGA------PGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT------- 298 (408)
T ss_pred eeeecccchhccccC------CCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 999999999999995 788887 6788899999999999999999999999999999999999
Q ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 323 ~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
||+++|.+|..||||.+.++.+|++++.+++.+|+.. +. ...++++|.++++.+.++
T Consensus 299 ~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r-----------~~-sy~aSiAK~fA~D~an~~ 355 (408)
T KOG0140|consen 299 PIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGR-----------RN-SYYASIAKLFATDTANQA 355 (408)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------cc-hHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999998642 33 678999999999988764
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.8e-50 Score=391.35 Aligned_cols=309 Identities=18% Similarity=0.175 Sum_probs=252.7
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
..++||.++++++++|+.++..+. ..+...+....++.++|+.|.++|| ||++||.|.++.+.
T Consensus 3 ~~~~eq~~l~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~e 75 (378)
T TIGR03203 3 DLSEEQRLLKESVEGLLKTSYDFD-------SRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVME 75 (378)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCHH-------HHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHH
Confidence 346899999999999999775311 1111122223356789999999998 89999988664321
Q ss_pred -------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCC
Q 016297 96 -------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (392)
Q Consensus 96 -------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~ 168 (392)
+.++..+..++...|..+|+++||++|||++++|+.++++++|||++|||...++|+++++ +|+|+||
T Consensus 76 el~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~--- 150 (378)
T TIGR03203 76 ALGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID--- 150 (378)
T ss_pred HHhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE---
Confidence 2233333334556788899999999999999999999999999999999999999999987 8899999
Q ss_pred CCcceeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecce
Q 016297 169 LTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (392)
Q Consensus 169 ~~G~K~~v~~~a~~Ad~~~V~A~~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v 247 (392)
|+|.||++ +..||+++|+|+++++. +..|+++|+|| .+.|||++.+.+.++| + .+++|+|+||
T Consensus 151 --G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v 214 (378)
T TIGR03203 151 --GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGV 214 (378)
T ss_pred --eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCC
Confidence 99999999 99999999999985432 34679999999 7889999987666555 4 4688999999
Q ss_pred ecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 016297 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (392)
Q Consensus 248 ~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~ 327 (392)
+||.+++||. .+.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 215 ~vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~ 275 (378)
T TIGR03203 215 VVGADAAIGD------PENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSF 275 (378)
T ss_pred cccHHhhcCC------cchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhh
Confidence 9999999984 344443 5667788999999999999999999999999999999999 99999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 328 q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
|+|||+|++|.+.++++|++++++++..+... ..+....++++|.++++++.++
T Consensus 276 Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~----------~~~~~~~~a~aK~~a~e~a~~v 329 (378)
T TIGR03203 276 QVLQHRAADMFVAVEQARSMAMFATMASDFDD----------AKERANAIAAAKVQIGKSLKFV 329 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------cchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998775310 0123467889999999998775
No 12
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-45 Score=361.90 Aligned_cols=309 Identities=18% Similarity=0.120 Sum_probs=249.8
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
..+++|.+|++++|+|++++..-+ .....+....++.+.|+.|.++|| |+++||.|.++...
T Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~ 75 (380)
T PRK03354 4 NLNDEQELFVAGIRELMASENWEA--------YFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWM 75 (380)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCh--------hHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHH
Confidence 457899999999999999764211 011122223355689999999998 89999988654221
Q ss_pred -------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCC
Q 016297 96 -------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (392)
Q Consensus 96 -------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~ 168 (392)
+.++..+.......|..+|+++||++||+++++|+.+.++++|||+.|||...+.|+++++ +|+|+||
T Consensus 76 ~la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln--- 150 (380)
T PRK03354 76 ELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN--- 150 (380)
T ss_pred HHHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe---
Confidence 2222222112345778889999999999999999999999999999999999999999987 7899999
Q ss_pred CCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEeccee
Q 016297 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (392)
Q Consensus 169 ~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 248 (392)
|+|+|+|+ +.+||+++|+|+++.+.+..++++|+|| .+.|||++. .|+++| ++++++++|.|+||+
T Consensus 151 --G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 216 (380)
T PRK03354 151 --GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVE 216 (380)
T ss_pred --eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEE
Confidence 99999999 8999999999997533333467889999 678999986 589999 999999999999999
Q ss_pred cCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 016297 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (392)
Q Consensus 249 Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q 328 (392)
||.++++|. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 217 Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q 277 (380)
T PRK03354 217 LDEKDMFGR------EGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQ 277 (380)
T ss_pred ecHHHcCCC------CChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhH
Confidence 999999985 344432 2334566788899999999999999999999999999999 999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 329 ~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
.+|++|++|.+.+++++++++++++.+++. . . ....++++|+++++.+.+++
T Consensus 278 ~vq~~la~~~~~~~aar~l~~~aa~~~~~~-------~----~-~~~~~~~aK~~~~~~a~~~~ 329 (380)
T PRK03354 278 LIQEKFAHMAIKLNSMKNMLYEAAWKADNG-------T----I-TSGDAAMCKYFCANAAFEVV 329 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C----c-chhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877531 1 1 12457789999999988763
No 13
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.3e-45 Score=363.22 Aligned_cols=308 Identities=17% Similarity=0.178 Sum_probs=241.6
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHH---HHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC--
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKN---TLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE-- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~-- 95 (392)
..++||.+|++++++|+.++...... +...+. +......+|+.+.++|| ||++||.|.++.+.
T Consensus 3 ~lteeq~~l~~~~r~f~~~~~~~~~~-------~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~ 75 (395)
T TIGR03204 3 AFSKEEQAFRDEVRSFFKDNVPADTR-------QKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYI 75 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChhhh-------hhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHH
Confidence 45789999999999999987532110 100000 00112368999999998 79999987654221
Q ss_pred ----------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEe
Q 016297 96 ----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (392)
Q Consensus 96 ----------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln 165 (392)
+.++..+..+++..|..+|+++||++|||++++|+.++++++|||++|||+..+.|+++++ +++|+||
T Consensus 76 v~eelg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln 153 (395)
T TIGR03204 76 FNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN 153 (395)
T ss_pred HHHHHHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe
Confidence 3344333234455788899999999999999999999999999999999999999999987 7899999
Q ss_pred cCCCCcceeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEe
Q 016297 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRF 244 (392)
Q Consensus 166 ~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f 244 (392)
|+|+||++ +..||+++|+++++.++ +..++++|+|| .+.|||++.+...+.| +.++++|.|
T Consensus 154 -----G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f 215 (395)
T TIGR03204 154 -----GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFF 215 (395)
T ss_pred -----eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEE
Confidence 99999999 99999999999975322 23578999999 6789999976554432 677899999
Q ss_pred cceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccc
Q 016297 245 EHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 324 (392)
Q Consensus 245 ~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i 324 (392)
+||+||.+++||. .+.++. .....+...|+.+++ +|+++++++.+++|+++|+|||+ ||
T Consensus 216 ~~v~Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i 274 (395)
T TIGR03204 216 DDVEVPYENLVGE------ENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PV 274 (395)
T ss_pred cceEEcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------cc
Confidence 9999999999984 344443 455667778888765 89999999999999999999999 99
Q ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 325 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 325 ~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
++||.+||+|++|.+.++++|++++++++..... +. ......++++|.++++.+.++
T Consensus 275 ~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~------~~----~~~~~~aa~aK~~~~~~~~~~ 331 (395)
T TIGR03204 275 IEDAKFREKLAAVEIELKALELTQLRVVADEGKH------GK----GKPNPASSVLKIKGSEIQQAT 331 (395)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CC----CCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997432110 00 011246899999999998765
No 14
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.5e-45 Score=359.12 Aligned_cols=305 Identities=24% Similarity=0.281 Sum_probs=252.7
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC--------
Q 016297 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE-------- 95 (392)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~-------- 95 (392)
|+|.+|++++++|+.++.. +. ....+....++.+.|+.|.++|| |+++||.+.++...
T Consensus 1 ~~~~~l~~~~~~~~~~~~~--~~-------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVA--PF-------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCc--hh-------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4788999999999997641 10 11122222355678999999998 89999987554221
Q ss_pred ----ch-HHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCC
Q 016297 96 ----PA-FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (392)
Q Consensus 96 ----~~-~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~ 170 (392)
+. .+.+|..++...+..+|+++|+++||+++++|+.++|+++|||++|||...+.|+++++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 11 23445545667788899999999999999999999999999999999999999999987 7899999
Q ss_pred cceeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceec
Q 016297 171 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (392)
Q Consensus 171 G~K~~v~~~a~~Ad~~~V~A~~~~~-~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 249 (392)
|+|.||++ +..||+++|.|+++++ +.+.++++|+|| .+.|||++.+.|+++| ++++++++|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 234578999999 6789999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 016297 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (392)
Q Consensus 250 p~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~ 329 (392)
|.+++|+. ++.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~ 274 (372)
T cd01160 214 PAENLLGE------ENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQV 274 (372)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999985 344332 3445677889999999999999999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 330 vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+|++|++|.+.+++++++++.+++.+++. . .....++++|+++++.+.++
T Consensus 275 vq~~la~~~~~~~~a~~~~~~aa~~~~~~-------~-----~~~~~~~~aK~~~~~~a~~v 324 (372)
T cd01160 275 VRHKIAELATKVAVTRAFLDNCAWRHEQG-------R-----LDVAEASMAKYWATELQNRV 324 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----CchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876531 1 12346788999999998775
No 15
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.8e-45 Score=359.58 Aligned_cols=307 Identities=22% Similarity=0.298 Sum_probs=250.6
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 016297 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (392)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------- 95 (392)
+++|.++++++++|+.++..... .+ .+....++.+.|+.|.++|| |+++||.|.++.+.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~--------~~-~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA--------AE-YDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch--------HH-HHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 57899999999999998742110 11 12222345678999999998 89999987654221
Q ss_pred -----chHHHhh-HhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCC
Q 016297 96 -----PAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (392)
Q Consensus 96 -----~~~~~~~-~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~ 169 (392)
+.++.++ ..++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|+++++ +|+|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 2222221 124444566789999999999999999999999999999999999999999987 7899999
Q ss_pred CcceeccCCCCCCCcEEEEEEEEccCCC---CCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecc
Q 016297 170 TSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (392)
Q Consensus 170 ~G~K~~v~~~a~~Ad~~~V~A~~~~~~~---~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~ 246 (392)
|+|+|||+ +..||+++|++++++++. ..++++|+|| .+.|||++.+.|.++| +++++++.|.|+|
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 899999999999764321 3578899999 6789999999999999 9999999999999
Q ss_pred eecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Q 016297 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (392)
Q Consensus 247 v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~ 326 (392)
|+||.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 215 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~ 275 (378)
T cd01157 215 VRVPKENVLIG------EGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAE 275 (378)
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHH
Confidence 99999999984 344433 3445667789999999999999999999999999999999 9999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 327 ~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
||.+||+|++|.+.++++|++++.+++.++.. ......++++|+++++.+.+++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~------------~~~~~~~~~aK~~~~~~a~~~~ 329 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLAYQRAAWEVDSG------------RRNTYYASIAKAFAADIANQLA 329 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877632 1123456889999999988763
No 16
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.7e-45 Score=359.26 Aligned_cols=306 Identities=24% Similarity=0.299 Sum_probs=253.9
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 016297 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (392)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------- 95 (392)
+|+|.++++.+++|+.++..... ...+....++.+.|+.|.++|| |+++||.+.+....
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 57889999999999987642111 1112222355679999999998 89999987653221
Q ss_pred -----ch--HHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCC
Q 016297 96 -----PA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (392)
Q Consensus 96 -----~~--~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~ 168 (392)
+. .+.+|. +++..+..+|+++|+++|++++++|+.++++++|||++|||...+.|+++++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 21 233443 5566788899999999999999999999999999999999999999999987 7899999
Q ss_pred CCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEeccee
Q 016297 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (392)
Q Consensus 169 ~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 248 (392)
|+|+||++ +..||+++|+|++.++ ...++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGE-GPKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCC-CCCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 8999999999997543 23568899999 6789999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 016297 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (392)
Q Consensus 249 Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q 328 (392)
||.+++|+. +|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 213 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~ 273 (375)
T cd01162 213 VPVENRLGG------EGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQ 273 (375)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhH
Confidence 999999985 344443 3445677889999999999999999999999999999999 999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 329 ~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
.+|+++++|.+++++++++++.+++.+++. . .+....++++|+++++.+.+++
T Consensus 274 ~vq~~la~~~~~l~~a~~~~~~a~~~~~~~-------~----~~~~~~~~~ak~~~~~~a~~~~ 326 (375)
T cd01162 274 ALQFKLADMATELVASRLMVRRAASALDRG-------D----PDAVKLCAMAKRFATDECFDVA 326 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C----CcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988642 1 1233567889999999988753
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=2.1e-45 Score=363.86 Aligned_cols=311 Identities=21% Similarity=0.238 Sum_probs=256.3
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
..+++|.+|++.+++|++++..... .+....++.+.|+.|.++|| |+++||.+.+....
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~-----------~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e 94 (409)
T cd01161 26 EQTEELNMLVGPVEKFFEEVNDPAK-----------NDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAE 94 (409)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCchh-----------hccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 4568999999999999998753210 01111244678999999998 89999987553211
Q ss_pred ------c--hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecC
Q 016297 96 ------P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (392)
Q Consensus 96 ------~--~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p 167 (392)
+ ..+.+|..+....+..+|+++|+++||+++++|+.++++++|||++|||...++|+|++++++++|+||
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~-- 172 (409)
T cd01161 95 IVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLN-- 172 (409)
T ss_pred HHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEE--
Confidence 1 123455544455677899999999999999999999999999999999999999999986547789999
Q ss_pred CCCcceeccCCCCCCCcEEEEEEEEcc---CC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEE
Q 016297 168 TLTSSKWWPGGLGKVSTHAVVYARLIT---DG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (392)
Q Consensus 168 ~~~G~K~~v~~~a~~Ad~~~V~A~~~~---~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~ 243 (392)
|+|.|||| +..||+++|.|++.. ++ ...++++|+|| .+.|||++.+.|+++| +++++++.|.
T Consensus 173 ---G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~~g~~s~~v~ 238 (409)
T cd01161 173 ---GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---IKGSNTAEVY 238 (409)
T ss_pred ---eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---CCCCCceEEE
Confidence 99999999 899999999999752 11 12578899999 6789999999999999 9999999999
Q ss_pred ecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCcc
Q 016297 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (392)
Q Consensus 244 f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~ 323 (392)
|+||+||++++||. .|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 239 ~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~-------~ 299 (409)
T cd01161 239 FEDVKIPVENVLGE------VGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK-------K 299 (409)
T ss_pred eccEEECHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------c
Confidence 99999999999985 344432 4556778899999999999999999999999999999999 9
Q ss_pred ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 324 i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
|.++|.+||+|++|.+.++++|++++.+++.+++.. ..+....++++|+++++.+.+++
T Consensus 300 l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~----------~~~~~~~~~~aK~~a~~~a~~v~ 358 (409)
T cd01161 300 IHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGL----------KAEYQIEAAISKVFASEAAWLVV 358 (409)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------CcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998886421 02345678999999999998763
No 18
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=3.4e-45 Score=358.71 Aligned_cols=306 Identities=21% Similarity=0.273 Sum_probs=253.4
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 016297 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (392)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------- 95 (392)
+++|.+|++++++|+.++.... ....+....+..+.|+.|.++|| |+++||.+.+..+.
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~---------a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPL---------AAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcc---------hHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 5789999999999999764211 11112222345678999999998 79999987653221
Q ss_pred -----ch--HHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCC
Q 016297 96 -----PA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (392)
Q Consensus 96 -----~~--~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~ 168 (392)
+. .+..|..++...|..+|+++|+++||+++++|++++++++|||.+|||...++|+++++ +|+|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 22 23445555666788999999999999999999999999999999999999999999987 7899999
Q ss_pred CCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEeccee
Q 016297 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (392)
Q Consensus 169 ~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 248 (392)
|+|.||++ +..||+++|+|+++.++...++.+|+|| .+.|||++.+.|+++| ++++++++|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997654444678999999 6789999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 016297 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (392)
Q Consensus 249 Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q 328 (392)
||++++|+. .+.++. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 216 Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 276 (376)
T cd01156 216 VPEENILGG------ENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQ 276 (376)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhH
Confidence 999999984 344332 3456677899999999999999999999999999999999 999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 329 ~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
.+||++++|.++++++|++++.+++.+|... .....++.+|.++++.+.++
T Consensus 277 ~v~~~la~~~~~l~aar~~~~~aa~~~d~~~------------~~~~~~~~~k~~~~~~a~~~ 327 (376)
T cd01156 277 LVQGKLADMYTRLNASRSYLYTVAKACDRGN------------MDPKDAAGVILYAAEKATQV 327 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876421 01234667899999888765
No 19
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=3.7e-45 Score=359.58 Aligned_cols=304 Identities=22% Similarity=0.235 Sum_probs=251.9
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHhhhcCC------
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----SEEEASMLRSSVDE------ 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~----~e~~gg~~~~~~~~------ 95 (392)
..+++|.++++.+++|+.+..... ....+....+..+.|+.|.++|| |+++||.+.+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~ 82 (386)
T cd01151 12 LLTEEERAIRDTAREFCQEELAPR---------VLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIARE 82 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcc---------HHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHH
Confidence 456899999999999999764210 00111112345678999999886 89999987654221
Q ss_pred ------c--hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecC
Q 016297 96 ------P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (392)
Q Consensus 96 ------~--~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p 167 (392)
+ .++.+|..++...|..+|+++|+++|++++++|+.++|+++|||++|||+..+.|+|+++ +|+|+||
T Consensus 83 l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 158 (386)
T cd01151 83 VERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN-- 158 (386)
T ss_pred HHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE--
Confidence 1 234455545556788899999999999999999999999999999999999999999987 8899999
Q ss_pred CCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecce
Q 016297 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (392)
Q Consensus 168 ~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v 247 (392)
|+|.|+|+ +..||+++|+|+++.+ .++.+|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 159 ---G~K~~is~-~~~Ad~~lv~ar~~~~---~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v 221 (386)
T cd01151 159 ---GSKTWITN-SPIADVFVVWARNDET---GKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNV 221 (386)
T ss_pred ---EEEEeecC-CCcCCEEEEEEEECCC---CcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccE
Confidence 99999999 8999999999997532 368899999 6789999999999999 99999999999999
Q ss_pred ecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 016297 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (392)
Q Consensus 248 ~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~ 327 (392)
+||++++|+. +.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++
T Consensus 222 ~Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~ 281 (386)
T cd01151 222 FVPEENLLPG-------AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAF 281 (386)
T ss_pred EeCHHHcCCc-------cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhh
Confidence 9999999973 23332 3445677789999999999999999999999999999999 99999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 328 q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
|.+|++|++|.+.++++|++++++++.+|+. . .....++++|.++++.+.++
T Consensus 282 q~vq~~la~~~~~~eaar~l~~~a~~~~d~~-------~-----~~~~~~~~~K~~~~~~a~~~ 333 (386)
T cd01151 282 QLVQKKLADMLTEIALGLLACLRVGRLKDQG-------K-----ATPEQISLLKRNNCGKALEI 333 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----CchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887642 1 11235788999999998875
No 20
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-45 Score=357.17 Aligned_cols=307 Identities=18% Similarity=0.120 Sum_probs=251.2
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
..++||.+++++++.|+.++...+ .....+....++.+.|+.|.++|| |+++||.|.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e 75 (381)
T PRK12341 4 SLTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLE 75 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHH
Confidence 456899999999999999763110 111122223356689999999998 89999988654221
Q ss_pred -------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHh-hccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecC
Q 016297 96 -------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (392)
Q Consensus 96 -------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l-~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p 167 (392)
+. +..+..+....|..+|+++||++||+++ .+|+.++++++|||++|||+..++|+|+++ +|+|+||
T Consensus 76 ~la~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln-- 150 (381)
T PRK12341 76 EVSKCGAPA-FLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN-- 150 (381)
T ss_pred HHhhcChhH-HHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE--
Confidence 21 2223334556688899999999999999 599988999999999999999999999987 7899999
Q ss_pred CCCcceeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecc
Q 016297 168 TLTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (392)
Q Consensus 168 ~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~ 246 (392)
|+|+|||+ +..||+++|+|+++.++ +..++++|+|| .+.|||++. .|+++| +++++++.|+|+|
T Consensus 151 ---G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~ 215 (381)
T PRK12341 151 ---GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDN 215 (381)
T ss_pred ---eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECc
Confidence 99999999 89999999999976433 23468999999 678999995 589999 9999999999999
Q ss_pred eecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Q 016297 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (392)
Q Consensus 247 v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~ 326 (392)
|+||++++||. ++.++. .....+..+|+.+++.++|+++++++.+++|+++|++||+ ||.+
T Consensus 216 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~ 276 (381)
T PRK12341 216 VEVEESDLVGE------EGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGH 276 (381)
T ss_pred EEecHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHH
Confidence 99999999985 344432 3345677889999999999999999999999999999999 9999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 327 ~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+|.+|++|++|.++++++|++++++++.+++. ......++++|+++++.+.++
T Consensus 277 ~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~------------~~~~~~~~~aK~~~~~~a~~v 329 (381)
T PRK12341 277 NQLIQEKLTLMAIKIENMRNMVYKVAWQADNG------------QSLRTSAALAKLYCARTAMEV 329 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876542 112346789999999998875
No 21
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=6.4e-45 Score=359.67 Aligned_cols=311 Identities=20% Similarity=0.268 Sum_probs=252.7
Q ss_pred hcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC----
Q 016297 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE---- 95 (392)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~---- 95 (392)
|..+++|.++++.+++|+.++...... ..+++.. ......+|+.|.++|| |+++||.+.+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~d~~~~----~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~ 96 (404)
T PLN02519 24 LLFDDTQLQFKESVQQFAQENIAPHAA---AIDATNS----FPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAM 96 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCcchH---HHHhcCC----CCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHH
Confidence 456789999999999999976421100 0001110 1112247999999998 89999987653211
Q ss_pred --------c--hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEe
Q 016297 96 --------P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (392)
Q Consensus 96 --------~--~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln 165 (392)
+ ..+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|+|...++|+++++ +|||+||
T Consensus 97 e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln 174 (404)
T PLN02519 97 EEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN 174 (404)
T ss_pred HHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE
Confidence 2 223445555566788899999999999999999999999999999999999999999987 7899999
Q ss_pred cCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEec
Q 016297 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFE 245 (392)
Q Consensus 166 ~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~ 245 (392)
|+|.|+++ +..||+++|+|+++++++..++++|+|| .+.|||++.+.|+++| ++++++++|.|+
T Consensus 175 -----G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~ 238 (404)
T PLN02519 175 -----GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFE 238 (404)
T ss_pred -----eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeC
Confidence 99999999 8999999999998654444678999999 6789999999999999 999999999999
Q ss_pred ceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Q 016297 246 HVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (392)
Q Consensus 246 ~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~ 325 (392)
||+||++++++. .+.++. .....+...|+.+++.++|+++++++.+++|+++|.+||+ ||+
T Consensus 239 ~v~Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~ 299 (404)
T PLN02519 239 NCFVPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIG 299 (404)
T ss_pred eEEecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHH
Confidence 999999999985 344332 3445677889999999999999999999999999999999 999
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 326 ~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
++|.+|++|++|.+++++++++++.+++.++... ......+.+|.++++.+.++
T Consensus 300 ~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~------------~~~~~~~~ak~~~~~~a~~~ 353 (404)
T PLN02519 300 EFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGK------------VDRKDCAGVILCAAERATQV 353 (404)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776421 11234667899999988765
No 22
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.7e-45 Score=379.55 Aligned_cols=329 Identities=17% Similarity=0.156 Sum_probs=255.5
Q ss_pred HHHhccCCCCHHHHHHHhc--CChhhHHHHHH-HHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---
Q 016297 8 APERKKAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL--- 81 (392)
Q Consensus 8 ~~~r~~~~~~~~~~~~~~~--~~~e~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~--- 81 (392)
..+=..-++||+++..+=+ .++|++++++. +++|+.....+. .. .....++.++|+.+.++||
T Consensus 58 ~~~lF~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~~~~--------~~---~~~~~~P~e~w~~L~e~G~~gl 126 (777)
T PRK09463 58 EGELFSGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVNDWQ--------IT---HELADLPPEVWQFIKEHGFFGM 126 (777)
T ss_pred hhhhcCCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--------Hh---ccccCCCHHHHHHHHHCCCCcC
Confidence 3333456778888733222 36788888886 777765221100 00 0011244678999999998
Q ss_pred --CHHHHHHHhhhcCC------------c--hHHHhhHhhhH-HHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCC
Q 016297 82 --SEEEASMLRSSVDE------------P--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGS 144 (392)
Q Consensus 82 --~e~~gg~~~~~~~~------------~--~~~~~~~~l~~-~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gs 144 (392)
||++||.|.+.... + ..+.+|+.++. ..|..+|+++||++|||++++|+.++||++|||++||
T Consensus 127 ~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGS 206 (777)
T PRK09463 127 IIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGS 206 (777)
T ss_pred CCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCC
Confidence 89999988653221 1 11234444543 4788999999999999999999999999999999999
Q ss_pred CcCCCceEEEE---eCCCC---eEEEecCCCCcceeccCCCCCCCcEEEEEEEE-ccC-----CCCCceEEEEEeeccCC
Q 016297 145 NVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----GQDHGVNGFIVQLRSLE 212 (392)
Q Consensus 145 d~~~~~t~a~~---~~~~~---~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~-~~~-----~~~~g~~~flV~~~~~~ 212 (392)
|+..++|+++. ..+|+ +|+|| |+|.|||+ +..||+++|++++ +++ .++.|+++||||
T Consensus 207 Daa~i~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp----- 275 (777)
T PRK09463 207 DAGSIPDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP----- 275 (777)
T ss_pred CcccccccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-----
Confidence 99998865432 11255 69999 99999999 9999999999986 322 134689999999
Q ss_pred CCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHH-HHHHHH
Q 016297 213 DHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVAD 291 (392)
Q Consensus 213 ~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r-~~~aa~ 291 (392)
.+.|||++.+.+.++| ++ ..++.|+|+||+||.+++||... ..|.++. .++..+..+| +.+++.
T Consensus 276 --~d~pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~~---~~G~G~~------~l~~~L~~gR~i~laA~ 340 (777)
T PRK09463 276 --TDTPGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGPK---MAGQGWR------MLMECLSVGRGISLPSN 340 (777)
T ss_pred --CCCCCeEecccccccC---cc-cccceEEeeeeecCHHHhccccc---ccChHHH------HHHHHHHHHHHHHHHHH
Confidence 7889999999999999 88 56899999999999999998421 1255554 6678889999 899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 016297 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (392)
Q Consensus 292 ~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~ 371 (392)
++|++++|++.+++|+++|+|||+ ||++||.|||+|++|.+.+++++++.+.+++.+|.. .
T Consensus 341 avG~ar~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G-------~----- 401 (777)
T PRK09463 341 STGGAKLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLG-------E----- 401 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C-----
Confidence 999999999999999999999999 999999999999999999999999988888777542 1
Q ss_pred hHHHHHhhHHHHhHHHHhhhC
Q 016297 372 EAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 372 ~~~~~~a~aK~~~~~~a~~~i 392 (392)
.....++++|+++++.+.+++
T Consensus 402 ~~~~~aA~AK~~atE~a~~va 422 (777)
T PRK09463 402 KPSVLSAIAKYHLTERGRQVI 422 (777)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 124578899999999998763
No 23
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=6.5e-45 Score=356.15 Aligned_cols=306 Identities=21% Similarity=0.188 Sum_probs=250.0
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 016297 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (392)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------- 95 (392)
+++|.++++++++|+.++..... . ..+....++...|+.|.++|| |+++||.+.++.+.
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~--------~-~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF--------K-ERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch--------H-HHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 47899999999999997642110 1 112222356789999999998 89999988664221
Q ss_pred -----chHHH-hhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCC
Q 016297 96 -----PAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (392)
Q Consensus 96 -----~~~~~-~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~ 169 (392)
+.++. ....+++..+..+|+++|+++||+++++|+.++++++|||++|||...+.|+++++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 22222 11234455678899999999999999999999999999999999999999999987 7899999
Q ss_pred CcceeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEeccee
Q 016297 170 TSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (392)
Q Consensus 170 ~G~K~~v~~~a~~Ad~~~V~A~~~~~-~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 248 (392)
|+|.|||+ +..||+++|+++++++ ....++.+|+|| .+.|||++. .|+++| ++++++++|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 8999999999997532 223578899999 678999975 589999 999999999999999
Q ss_pred cCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 016297 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (392)
Q Consensus 249 Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q 328 (392)
||.+++|+. ++.++. .....+...|+.+++.++|+++++|+.+++|+++|+|||+ ||++||
T Consensus 214 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q 274 (372)
T TIGR03207 214 VPADHMLGN------EGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQ 274 (372)
T ss_pred ccHHHcCCC------CChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhH
Confidence 999999985 344433 3445677899999999999999999999999999999999 999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 329 ~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
.|||+|++|.+.++++|++++.+++.++.. ......++++|.++++.+.+++
T Consensus 275 ~v~~~la~~~~~~~~ar~l~~~aa~~~~~~------------~~~~~~~~~aK~~~~~~a~~v~ 326 (372)
T TIGR03207 275 GVSHPLADAETQVEAARLLCLQTLWLKDHG------------LPHTSEAAMCKWWAPKLAYDVI 326 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877632 1112457899999999988763
No 24
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-44 Score=356.51 Aligned_cols=304 Identities=21% Similarity=0.243 Sum_probs=251.1
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
..+++|.++++++++|+.++.... ....+....++.+.|+.|.++|| |+++||.+.+....
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~---------a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e 106 (410)
T PTZ00461 36 NPTPEHAALRETVAKFSREVVDKH---------AREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHH 106 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCcc---------HHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 456889999999999998764211 11112222456789999999998 89999987653221
Q ss_pred ---------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEec
Q 016297 96 ---------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (392)
Q Consensus 96 ---------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~ 166 (392)
+.++..|..++...+..+|+++||++|||++++|+.++++++|||++|||+..+.|+++++. +|+|+||
T Consensus 107 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~- 184 (410)
T PTZ00461 107 ELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN- 184 (410)
T ss_pred HHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE-
Confidence 12234454456667788999999999999999999999999999999999999999999862 3479999
Q ss_pred CCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecc
Q 016297 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (392)
Q Consensus 167 p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~ 246 (392)
|+|+|||| +..||+++|+|+++ .++++|+|| .+.|||++.+.|+++| ++++++++|.|+|
T Consensus 185 ----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~l~f~~ 244 (410)
T PTZ00461 185 ----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQLFFED 244 (410)
T ss_pred ----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEEEEEcc
Confidence 99999999 89999999999863 247899999 6789999999999999 9999999999999
Q ss_pred eecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Q 016297 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (392)
Q Consensus 247 v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~ 326 (392)
|+||++++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 245 v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~ 305 (410)
T PTZ00461 245 VVVPAENLLGE------EGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK-------PISN 305 (410)
T ss_pred eecCHHHhCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc-------CHHh
Confidence 99999999985 344432 3455677899999999999999999999999999999999 9999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 327 ~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
||.+|++|++|.+.++++|++++.+++.++.. ......++++|.++++.+.++
T Consensus 306 ~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~------------~~~~~~~~~aK~~a~~~a~~v 358 (410)
T PTZ00461 306 FGQIQRYIAEGYADTEAAKALVYSVSHNVHPG------------NKNRLGSDAAKLFATPIAKKV 358 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998866431 112345678999999998875
No 25
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-44 Score=355.14 Aligned_cols=304 Identities=21% Similarity=0.265 Sum_probs=250.5
Q ss_pred cCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhhhcCC------
Q 016297 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRSSVDE------ 95 (392)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~----e~~gg~~~~~~~~------ 95 (392)
..+++|.+|++++++|+.++.... .++ . .....++.++|+.|.++||. +++||.|.++.+.
T Consensus 28 ~~t~~~~~l~~~~~~f~~~~~~~~-------~~~-~-~~~~~~p~~~~~~l~~~G~~~~~v~~~GG~G~~~~~~~~~~e~ 98 (412)
T PLN02526 28 LLTPEEQALRKRVRECMEKEVAPI-------MTE-Y-WEKAEFPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAE 98 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccc-------hHH-H-HHhCCCCHHHHHHHHHCCCCcCcccccCCCCcCHHHHHHHHHH
Confidence 346899999999999999764210 111 1 11223556799999999984 6789887654221
Q ss_pred ------c--hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecC
Q 016297 96 ------P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (392)
Q Consensus 96 ------~--~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p 167 (392)
+ ..+.+|..++...|..+|+++||++||+++++|+.++++++|||++||++..+.|+++++ +|+|+||
T Consensus 99 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~gg~~ln-- 174 (412)
T PLN02526 99 VARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKV--EGGWILN-- 174 (412)
T ss_pred HHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEE--CCEEEEE--
Confidence 1 123445555666788999999999999999999999999999999999999999999988 7899999
Q ss_pred CCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecce
Q 016297 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (392)
Q Consensus 168 ~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v 247 (392)
|+|.||++ +..||+++|+++++.+ .++++|+|| .+.|||++.+.|+++| ++++++++|.|+||
T Consensus 175 ---G~K~~vs~-~~~Ad~~lv~a~~~~~---~~~~~flV~-------~~~~Gv~~~~~~~~~G---~r~t~s~~v~f~~v 237 (412)
T PLN02526 175 ---GQKRWIGN-STFADVLVIFARNTTT---NQINGFIVK-------KGAPGLKATKIENKIG---LRMVQNGDIVLKDV 237 (412)
T ss_pred ---EEEeeecC-CCccCEEEEEEEeCCC---CCeEEEEEc-------CCCCCeEcCCCCCccC---cCCCCeeEEEEeeE
Confidence 99999999 8999999999997532 357899999 6789999999999999 99999999999999
Q ss_pred ecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 016297 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (392)
Q Consensus 248 ~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~ 327 (392)
+||++++|+. .+ ++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 238 ~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~-------~i~~~ 297 (412)
T PLN02526 238 FVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAF 297 (412)
T ss_pred EECHHHhCCC------cc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCC-------chhhh
Confidence 9999999973 11 111 2345677899999999999999999999999999999999 99999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 328 q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
|.+||++++|.+.++++|++++++++.+|.. . .....++++|+++++.+.++
T Consensus 298 q~vq~~la~~~~~l~aar~~~~~aa~~~d~~-------~-----~~~~~~~~aK~~a~~~a~~v 349 (412)
T PLN02526 298 QINQEKLVRMLGNIQAMFLVGWRLCKLYESG-------K-----MTPGHASLGKAWITKKARET 349 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C-----CChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887642 1 11234789999999998876
No 26
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=8.4e-44 Score=367.21 Aligned_cols=277 Identities=20% Similarity=0.170 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC--------------chHHHhhHhhh-HHHHhcCCCHHHHHhhhhHh
Q 016297 67 RKAAYAWKRIIELRL-----SEEEASMLRSSVDE--------------PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLA 126 (392)
Q Consensus 67 ~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~--------------~~~~~~~~~l~-~~~i~~~g~~eq~~~~l~~l 126 (392)
.++.++|+.|.++|| ||++||.|.+.... +..+.+|+.++ +..|..+|++|||++|||++
T Consensus 108 ~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~L 187 (774)
T PRK13026 108 DLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRL 187 (774)
T ss_pred CCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHH
Confidence 355679999999998 89999988654221 11233444444 34788999999999999999
Q ss_pred hccceeeEEeccCCCCCCCcCCCceEEEE---eCCCC---eEEEecCCCCcceeccCCCCCCCcEEEEEEEE-ccC----
Q 016297 127 YKMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD---- 195 (392)
Q Consensus 127 ~~G~~~~~~a~tE~~~gsd~~~~~t~a~~---~~~~~---~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~-~~~---- 195 (392)
++|+.++||++|||++|||+.+++|+++. ..+|+ +|+|| |+|.|||+ +..||+++|.+++ +++
T Consensus 188 AsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g 261 (774)
T PRK13026 188 ADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLG 261 (774)
T ss_pred hCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCcccccc
Confidence 99999999999999999999999877642 12255 69999 99999999 9999999887764 322
Q ss_pred -CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchh
Q 016297 196 -GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPR 274 (392)
Q Consensus 196 -~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~ 274 (392)
++..|+++|+|| .+.|||++.+.++++| ++.. +++++|+||+||.+++||... ..|.++.
T Consensus 262 ~~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~~-~g~v~fdDV~VP~d~lLG~~~---~~G~G~~----- 322 (774)
T PRK13026 262 DKKELGITCALIP-------TDHPGVEIGRRHNPLG---MAFM-NGTTRGKDVFIPLDWIIGGPD---YAGRGWR----- 322 (774)
T ss_pred CCCCCceEEEEEE-------CCCCCeEeeccccccc---cCcc-cceEEEeeeEccHHHhcCCcc---cCChHHH-----
Confidence 134689999999 7889999999899999 8864 589999999999999998421 1255654
Q ss_pred hHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHH---HHHHHHHHHHH
Q 016297 275 QLLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEW 350 (392)
Q Consensus 275 ~~~~~~l~~~r-~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~---~~~~a~~~~~~ 350 (392)
.++..+..+| +.+++.++|+++++++.+++|+++|+|||+ ||++||.|||+|++|.+ .++++|.+++.
T Consensus 323 -~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~ 394 (774)
T PRK13026 323 -MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTT 394 (774)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999 899999999999999999999999999999 99999999999999999 68888888776
Q ss_pred HHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 351 LKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 351 aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+. |.. . .....++++|+++++.+.++
T Consensus 395 a~---D~G-------~-----~~~~~aA~AK~~atE~a~~v 420 (774)
T PRK13026 395 GL---DLG-------V-----KPSVVTAIAKYHMTELARDV 420 (774)
T ss_pred HH---HCC-------C-----CchHHHHHHHHHHHHHHHHH
Confidence 53 321 1 12467899999999998875
No 27
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=1.5e-42 Score=339.57 Aligned_cols=305 Identities=25% Similarity=0.289 Sum_probs=250.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC--------
Q 016297 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE-------- 95 (392)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~-------- 95 (392)
++|.++++.+++|+.++.... ....+....+....|+.|.+.|| |+++||.+.++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---------a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPL---------AAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccc---------hHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 468899999999998654211 01111112245678999999998 79999977543211
Q ss_pred ------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCC
Q 016297 96 ------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (392)
Q Consensus 96 ------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~ 169 (392)
+..+.+|..++...+..+|+++|+++|++++++|+.++++++|||++||+...+.++++++ ++||+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 2234456545667788899999999999999999999999999999999998899999987 7899999
Q ss_pred CcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceec
Q 016297 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (392)
Q Consensus 170 ~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 249 (392)
|+|.|+++ +..||+++|.+++..+.+..++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999987544334578899999 6789999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 016297 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (392)
Q Consensus 250 p~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~ 329 (392)
|++++|+. .+.++. .....+..+|+.+++.++|+++++++.+++|+++|++||+ |+.+||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~ 274 (373)
T cd01158 214 PKENILGE------EGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQG 274 (373)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHH
Confidence 99999985 343332 3445677789999999999999999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 330 vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+|++++++.+.+++++++++.+++.++.. ......++++|+++++.+.++
T Consensus 275 v~~~la~~~~~l~aa~~~~~~aa~~~~~~------------~~~~~~~~~~k~~~~~~a~~~ 324 (373)
T cd01158 275 IQFKLADMATEIEAARLLTYKAARLKDNG------------EPFIKEAAMAKLFASEVAMRV 324 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877631 122355788999999988765
No 28
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.5e-42 Score=341.83 Aligned_cols=312 Identities=18% Similarity=0.215 Sum_probs=244.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCccccCCHH-HHHH----HHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-----
Q 016297 31 AFQVSDRIARLVASDPAFRKDNRAMLSRK-ELFK----NTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (392)
Q Consensus 31 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~----- 95 (392)
.+++++++|+|++++..... ...++. .... .+......+|+.+.++|| |+++||.|.++.+.
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE---QEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH---HHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 46799999999997742100 000000 0000 012244678999999998 89999987654322
Q ss_pred --------chHHHhhH--hhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCC-CCCCcCCCceEEEEeCCCCeEEE
Q 016297 96 --------PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 164 (392)
Q Consensus 96 --------~~~~~~~~--~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~-~gsd~~~~~t~a~~~~~~~~~~L 164 (392)
+.++..+. ......|..+|+++|+++||+++++|+.++++++|||+ .|||...+.|+++++ +|+|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 11221111 12234688899999999999999999999999999997 679999999999987 789999
Q ss_pred ecCCCCcceeccCCCCCC--CcEEEEEEEEccCC--CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCC--CC
Q 016297 165 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 238 (392)
Q Consensus 165 n~p~~~G~K~~v~~~a~~--Ad~~~V~A~~~~~~--~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~--~~ 238 (392)
| |+|+|+|+ +.+ +|+++|+++++.++ ...++++|+|| .+.|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999999 744 78999999975432 23578999999 6789999999999999 997 57
Q ss_pred ceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 016297 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 318 (392)
Q Consensus 239 ~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~ 318 (392)
+++|.|+||+||++++|+. ++.++. .....+...|+..++.++|+++++++.+++|+++|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~--- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLILG------EGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK--- 286 (394)
T ss_pred eeEEEEccEEecHHHcCCC------CChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC---
Confidence 8899999999999999984 344433 4456677789999999999999999999999999999999
Q ss_pred CCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 319 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 319 ~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
||+++|.+||+|++|.+.++++|++++.+++.+++.. . .+....++++|+++++.+.+++
T Consensus 287 ----~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~------~----~~~~~~~~~aK~~~~~~a~~~~ 346 (394)
T cd01155 287 ----KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVG------N----KAARKEIAMIKVAAPRMALKII 346 (394)
T ss_pred ----cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------C----cchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876421 0 1234668899999999998763
No 29
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-42 Score=308.69 Aligned_cols=284 Identities=23% Similarity=0.309 Sum_probs=233.4
Q ss_pred CChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHhh-----hc----
Q 016297 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEASMLRS-----SV---- 93 (392)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~----e~~gg~~~~-----~~---- 93 (392)
-++|.+.+|+++|.++.+.-. ++ .....+.+. ++..+-..|+.+|+. .-||=.|.+ ++
T Consensus 55 LT~dE~air~~~Reycq~~l~-Pr--vtea~r~e~------F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEv 125 (432)
T KOG0138|consen 55 LTEDEIAIRDTFREYCQERLM-PR--VTEANRNEV------FDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREV 125 (432)
T ss_pred cCHHHHHHHHHHHHHHHHHhh-hH--HHHHhhhcc------CChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHH
Confidence 357888999999999986642 11 011222222 344555567777762 233322221 11
Q ss_pred ---CC--chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCC
Q 016297 94 ---DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (392)
Q Consensus 94 ---~~--~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~ 168 (392)
+. ...+.+|.++...+|..+|+++||++|||.+++|+.++||++|||.+|||+.++.|+|++++.+..|.||
T Consensus 126 eRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN--- 202 (432)
T KOG0138|consen 126 ERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN--- 202 (432)
T ss_pred HHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC---
Confidence 11 2346788889999999999999999999999999999999999999999999999999999766679999
Q ss_pred CCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEeccee
Q 016297 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (392)
Q Consensus 169 ~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~ 248 (392)
|+|.||+| +..||+++|+||...++ .+.-|+|+ ++.+|++...+..|++ +|.+.++.|..|+|+
T Consensus 203 --GsKtWI~n-sp~aDl~vvwAr~~t~n---~I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~ 266 (432)
T KOG0138|consen 203 --GSKTWITN-SPMADLFVVWARCETDN---KIRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVE 266 (432)
T ss_pred --CeeeeecC-CcccceEEEEEecccCC---ceeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCc
Confidence 99999999 99999999999976443 36779999 8999999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 016297 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (392)
Q Consensus 249 Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q 328 (392)
||++++|.. -..+. -.+..|..+|..++...+|++..+++++.+|+..|+|||+ |++.+|
T Consensus 267 VPeE~~LPg-------~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQ 326 (432)
T KOG0138|consen 267 VPEENLLPG-------ASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQ 326 (432)
T ss_pred CChhhcCCC-------ccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHH
Confidence 999999952 22332 2356788899999999999999999999999999999999 999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016297 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDV 358 (392)
Q Consensus 329 ~vq~~la~~~~~~~~a~~~~~~aa~~~d~~ 358 (392)
.+|.+|++|+.++...-.++++..+..|+.
T Consensus 327 L~Q~Kladmltei~lgl~~clrl~rLkd~g 356 (432)
T KOG0138|consen 327 LIQKKLADMLTEITLGLQACLRLGRLKDQG 356 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999988888888887764
No 30
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.8e-41 Score=334.28 Aligned_cols=308 Identities=27% Similarity=0.349 Sum_probs=246.1
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC---------
Q 016297 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (392)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~--------- 94 (392)
+++.++++++++|+.++..... ....+.. ....+..+.|+.+.++|| |+++||.+.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEA---AEIDRRI---EDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcch---hhhhhhc---ccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 6788999999999997753110 0001100 011223577888998887 8999986544311
Q ss_pred ---C--chHHHhhHh---hhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCc-eEEEEeCCCCeEEEe
Q 016297 95 ---E--PAFTDLHWG---MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 165 (392)
Q Consensus 95 ---~--~~~~~~~~~---l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~-t~a~~~~~~~~~~Ln 165 (392)
. ...+.++.. .....+..+|+++|+++|||++++|+.++|+++|||.+|||+..+. |+++.+ +|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 1 111222221 2234667799999999999999999999999999999999999988 666664 4459999
Q ss_pred cCCCCcceeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEeeccCCCCCC-CCCeEEeccCCcccCCccCCCCceeEE
Q 016297 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 243 (392)
Q Consensus 166 ~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~-~~~~g~~~flV~~~~~~~~~~-~~Gv~i~~~~~~~G~~~~~~~~~~~v~ 243 (392)
|+|+|||+ +..||+++|+|++++. .+.+|+++|+|| .+ .|||++.+.|.+.| ++++++++|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 9999999999998765 355789999999 66 59999999876448 8999999999
Q ss_pred ecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCcc
Q 016297 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (392)
Q Consensus 244 f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~ 323 (392)
|+||+||.+++||. .+.++. .+...+..+|+.+++.++|++++|++.+++|+++|++||+ |
T Consensus 223 f~~v~vp~~~lig~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~ 283 (393)
T COG1960 223 FDDVRVPAENLLGE------EGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------P 283 (393)
T ss_pred ECCeeccHHHcCCc------CCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------c
Confidence 99999999999983 455554 5677888999999999999999999999999999999998 9
Q ss_pred ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 324 i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
|++||.+|++|++|.+.+++++++++++++..+... .....++++|.++++.+.++
T Consensus 284 i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~------------~~~~~~~~aK~~a~~~~~~~ 339 (393)
T COG1960 284 IADFQLVQFKLADMAAELEAARLLVLRAAELADAGD------------DAGAEAAMAKLFATEAALEV 339 (393)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887776431 12267899999999998765
No 31
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.2e-41 Score=359.18 Aligned_cols=317 Identities=15% Similarity=0.183 Sum_probs=246.5
Q ss_pred hcCChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHH-HHHH-HHHHHHHH-HcCC-----CHH------------
Q 016297 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNT-LRKA-AYAWKRII-ELRL-----SEE------------ 84 (392)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~w~~l~-~lG~-----~e~------------ 84 (392)
+..+++|.++++++++|+.++..... ....+....... ..++ ...|+.+. ++|| ||+
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~ 476 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPME---NEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFED 476 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCcc---HHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence 45578999999999999998732100 000000000000 0022 25677775 9998 675
Q ss_pred ------------HHHHHhhhcCC------------chHHH---hhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEec
Q 016297 85 ------------EASMLRSSVDE------------PAFTD---LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQ 137 (392)
Q Consensus 85 ------------~gg~~~~~~~~------------~~~~~---~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~ 137 (392)
+||.|.++.+. +.++. .+......+|..+|+++||++||+++++|+.++|+++
T Consensus 477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~ 556 (822)
T PLN02876 477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM 556 (822)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence 78887654322 11111 1111233568889999999999999999999999999
Q ss_pred cCCC-CCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCC--CCCcEEEEEEEEccCC-CCCceEEEEEeeccCCC
Q 016297 138 TELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KVSTHAVVYARLITDG-QDHGVNGFIVQLRSLED 213 (392)
Q Consensus 138 tE~~-~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a--~~Ad~~~V~A~~~~~~-~~~g~~~flV~~~~~~~ 213 (392)
|||+ +|||+.+++|+++++ +|+|+|| |+|+||++ + ..||+++|+++++.++ ...++++|+||
T Consensus 557 tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ad~~lv~ar~~~~~~~~~~~s~flV~------ 622 (822)
T PLN02876 557 TEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPRCRVLIVMGKTDFNAPKHKQQSMILVD------ 622 (822)
T ss_pred cCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCCCCEEEEEEecCCCCCCCCcceEEEEe------
Confidence 9997 689999999999987 8899999 99999999 7 4699999999975432 23568999999
Q ss_pred CCCCCCeEEeccCCcccCCccCCC--CceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHH
Q 016297 214 HSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291 (392)
Q Consensus 214 ~~~~~Gv~i~~~~~~~G~~~~~~~--~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~ 291 (392)
.+.|||++.+.|.++| +++. ++++|.|+||+||.+++|+. .|.++. .+...+..+|+..++.
T Consensus 623 -~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~ 686 (822)
T PLN02876 623 -IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG------EGRGFE------IAQGRLGPGRLHHCMR 686 (822)
T ss_pred -CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC------CCchHH------HHHHHHhhhHHHHHHH
Confidence 6789999998999999 9874 57899999999999999974 344443 4556777899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Q 016297 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (392)
Q Consensus 292 ~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~ 371 (392)
++|++++|++.+++|+++|+|||+ ||++||.+||+|++|.+.++++|++++.+++.+++.. . .
T Consensus 687 ~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~------~----~ 749 (822)
T PLN02876 687 LIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLG------N----K 749 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------C----c
Confidence 999999999999999999999999 9999999999999999999999999999998886421 0 1
Q ss_pred hHHHHHhhHHHHhHHHHhhh
Q 016297 372 EAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 372 ~~~~~~a~aK~~~~~~a~~~ 391 (392)
.....++++|+++++++.++
T Consensus 750 ~~~~~~a~aK~~a~e~a~~v 769 (822)
T PLN02876 750 KARGIIAMAKVAAPNMALKV 769 (822)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 23457889999999999876
No 32
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=4.2e-40 Score=316.53 Aligned_cols=282 Identities=27% Similarity=0.373 Sum_probs=238.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhhcCCchHHHhhHhhhHH
Q 016297 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVP 108 (392)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~e~~gg~~~~~~~~~~~~~~~~~l~~~ 108 (392)
++|.++++.+++|+.++..... . ...+.+...|+.+.++||. +++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~g~~----------------------~~~~ 46 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYA--------R----ERRETPEEPWELLAELGLL----------------------LGAA 46 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccH--------H----hHHhhCCCCHHHHHHHHHH----------------------hchH
Confidence 4688999999999998753211 1 1111334567788877766 4556
Q ss_pred HHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEE
Q 016297 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (392)
Q Consensus 109 ~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V 188 (392)
+|..+|+++|+++||+.+++|+.+++++++||++|++...+.++++++ ++||+|| |+|.|+++ +..||+++|
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv 118 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIV 118 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEE
Confidence 778889999999999999999999999999999999999999999987 7899999 99999999 899999999
Q ss_pred EEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeE
Q 016297 189 YARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKY 267 (392)
Q Consensus 189 ~A~~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~ 267 (392)
++++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.|.|+||+||.+++++. .+.+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g 182 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------EGGG 182 (327)
T ss_pred EEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------CCch
Confidence 99976432 33568899999 6789999999999999 999999999999999999999984 2333
Q ss_pred EecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHH
Q 016297 268 VQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 347 (392)
Q Consensus 268 ~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~ 347 (392)
.. .....+..+++.+++.++|+++++++.+++|+++|+|||+ ||.++|.+|++|+++.+.+++++++
T Consensus 183 ~~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~ 249 (327)
T cd00567 183 FE------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLL 249 (327)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHH
Confidence 22 3456677899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 348 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 348 ~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
++.+++.++... ......++++|+++++.+.+++
T Consensus 250 ~~~a~~~~~~~~-----------~~~~~~~~~~k~~~~~~a~~~~ 283 (327)
T cd00567 250 LYRAAWLLDQGP-----------DEARLEAAMAKLFATEAAREVA 283 (327)
T ss_pred HHHHHHHHhCCC-----------CcchHHHHHHHHHHHHHHHHHH
Confidence 999998776421 1245678899999999988763
No 33
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.2e-40 Score=325.08 Aligned_cols=305 Identities=19% Similarity=0.200 Sum_probs=234.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcC---------
Q 016297 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (392)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~--------- 94 (392)
+||.++++.+++|+.++........... + .+....+...+|+.|.++|| |+++||.+.+...
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~ 76 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESAL---G-YREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMA 76 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccc---c-ccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHH
Confidence 4678999999999998864221100000 0 00111234566788999997 8999998755321
Q ss_pred ---CchHHH-hhHhhhHHHHhcCCCHHHHHhhhhHhhccceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCC
Q 016297 95 ---EPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (392)
Q Consensus 95 ---~~~~~~-~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~ 170 (392)
.+.++. .+..+++..|..+|+++|+++||+++++|+.++++++|||++|||...+.|+++++ +++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~----- 149 (380)
T cd01152 77 AAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN----- 149 (380)
T ss_pred hcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----
Confidence 122221 12224556788899999999999999999988999999999999999999999987 7899999
Q ss_pred cceeccCCCCCCCcEEEEEEEEccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceec
Q 016297 171 SSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (392)
Q Consensus 171 G~K~~v~~~a~~Ad~~~V~A~~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~V 249 (392)
|+|.|||+ +..||+++|+|++++++ +..++.+|+|| .+.|||++.+.|.++| ++++++|.|+||+|
T Consensus 150 G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v~V 216 (380)
T cd01152 150 GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDVRV 216 (380)
T ss_pred cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCcCc
Confidence 99999999 89999999999976432 23478999999 6789999999988776 56789999999999
Q ss_pred CcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 016297 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (392)
Q Consensus 250 p~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~ 329 (392)
|.+++|+. .+.++. .+...+...|+.++ |.+.++++.+++|+++|.+||+ ||+++|.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~~----~~~~~~~~~a~~~a~~r~~~g~-------~l~~~~~ 273 (380)
T cd01152 217 PDANRVGE------VNDGWK------VAMTTLNFERVSIG----GSAATFFELLLARLLLLTRDGR-------PLIDDPL 273 (380)
T ss_pred chhcccCC------CCchHH------HHHHHHHhcccccc----hhhhHHHHHHHHHHHHHHhcCC-------CcccCHH
Confidence 99999985 344443 34445556666554 4455566677889999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 330 vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
+|++|++|.+++++++++++.+++.+++.. .....++++|+++++.+.+++
T Consensus 274 vq~~la~~~~~l~~a~~l~~~aa~~~~~~~------------~~~~~~a~aK~~~~~~a~~v~ 324 (380)
T cd01152 274 VRQRLARLEAEAEALRLLVFRLASALAAGK------------PPGAEASIAKLFGSELAQELA 324 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886421 122457899999999988763
No 34
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=8.4e-40 Score=323.49 Aligned_cols=296 Identities=19% Similarity=0.161 Sum_probs=225.9
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHhhhcCC------------chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhcccee
Q 016297 70 AYAWKRIIELRL-----SEEEASMLRSSVDE------------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (392)
Q Consensus 70 ~~~w~~l~~lG~-----~e~~gg~~~~~~~~------------~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~ 132 (392)
.++|+.|.+.|| |+++||.+.+.... +.++..........|..+|+++||++|++++++|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 568999999998 79999877553221 2222111113445677889999999999999999999
Q ss_pred eEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCC----cEEEEEEEEccCC-CCCceEEEEEe
Q 016297 133 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 207 (392)
Q Consensus 133 ~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~A----d~~~V~A~~~~~~-~~~g~~~flV~ 207 (392)
+|+++|||++|||+..++|++++++ +|+|+|| |+|+|+|+ +.+| ++++|++++.+++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999863 3589999 99999999 7776 5788999875322 23578999999
Q ss_pred eccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHH
Q 016297 208 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 287 (392)
Q Consensus 208 ~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~ 287 (392)
.+.++ ...|||++.+.|+++| ++++++++|.|+||+|| +|+. ++.++. .....+..+|+.
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~------~~~~~l~~~r~~ 251 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIGE------EGMGLA------QMFAMMNGARLG 251 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeCC------CCccHH------HHHHHHHHHHHH
Confidence 32100 0138999999999999 99999999999999999 6763 344443 455677788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC-CccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016297 288 IVADASCALSRAVCIATRYSAVRRQFGSKNGGP-ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (392)
Q Consensus 288 ~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~-~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~ 366 (392)
+++.++|+++++|+.+++|+++|++||++.... ...+.++|.+|++|++|.+++++++++++++++.+|+........+
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~ 331 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGE 331 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhh
Confidence 999999999999999999999999999921111 1128899999999999999999999999999998876310000000
Q ss_pred CC--CchhHHHHHhhHHHHhHHHHhhhC
Q 016297 367 FS--TLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 367 ~~--~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
.. ........++++|+++++.+.+++
T Consensus 332 ~~~~~~~~~~~~~~~aK~~~~~~a~~v~ 359 (407)
T cd01153 332 DRKALSALADLLTPVVKGFGSEAALEAV 359 (407)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001124567899999999998763
No 35
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-39 Score=329.06 Aligned_cols=292 Identities=17% Similarity=0.119 Sum_probs=229.4
Q ss_pred HHHHHHHHcCC-----CHHHHHHHhhhcCC----------chHHHhh---HhhhHHHHhcCCCHHHHHhhhhHhhcccee
Q 016297 71 YAWKRIIELRL-----SEEEASMLRSSVDE----------PAFTDLH---WGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (392)
Q Consensus 71 ~~w~~l~~lG~-----~e~~gg~~~~~~~~----------~~~~~~~---~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~ 132 (392)
++|+.+.++|| |+++||.|.+.... ..++.++ ....+..|..+|+++||++|||++++|+++
T Consensus 103 e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~ 182 (622)
T PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182 (622)
T ss_pred HHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChh
Confidence 58999999999 79999987653210 1112111 112345788999999999999999999999
Q ss_pred eEEeccCCCCCCCcCCCceEEEEeCCCC-eEEEecCCCCcceeccCCCCCCC----cEEEEEEEEccC-CCCCceEEEEE
Q 016297 133 GCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFIV 206 (392)
Q Consensus 133 ~~~a~tE~~~gsd~~~~~t~a~~~~~~~-~~~Ln~p~~~G~K~~v~~~a~~A----d~~~V~A~~~~~-~~~~g~~~flV 206 (392)
+++++|||++|||+..++|+|+++ +| +|+|| |+|+|||+ +.++ ++++|+||+++. ++.+|+++|+|
T Consensus 183 ~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlV 254 (622)
T PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFLV 254 (622)
T ss_pred hhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEEE
Confidence 999999999999999999999987 55 69999 99999998 7763 678999998653 34578999999
Q ss_pred eeccCCC-C--CCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHH
Q 016297 207 QLRSLED-H--SPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283 (392)
Q Consensus 207 ~~~~~~~-~--~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 283 (392)
|...++. + ...+||++...++++| +++++++.|.|+|+ ..++||. ++.++. .++..+..
T Consensus 255 p~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~~---~~~llG~------~~~Gl~------~~~~~mn~ 316 (622)
T PTZ00456 255 PRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFENS---VGYLIGE------PNAGMK------QMFTFMNT 316 (622)
T ss_pred eCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeCh---hHhhcCC------CChHHH------HHHHHHHH
Confidence 9643211 0 1236899988899999 99999999999994 6788884 455554 56777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC-----CCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016297 284 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 358 (392)
Q Consensus 284 ~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~-----~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~ 358 (392)
+|+.+++.++|+++++++.+++|+++|+||+...+ ....||+++|.||++|++|.+.++++|++++++++.+|..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999854322 1234999999999999999999999999999999988864
Q ss_pred HHhhccCCCC----CchhHHHHHhhHHHHhHHHHhhh
Q 016297 359 TQRLQANDFS----TLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 359 ~~~~~~~~~~----~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
... .+.. ........++++|+++++.+.++
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~v 430 (622)
T PTZ00456 397 AAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEA 430 (622)
T ss_pred ccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 200 0000 00123467889999999998875
No 36
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=317.98 Aligned_cols=278 Identities=24% Similarity=0.305 Sum_probs=242.8
Q ss_pred HHHHHHHHHHcCC-----CHHHHHHHhhh------cC------C--chHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhcc
Q 016297 69 AAYAWKRIIELRL-----SEEEASMLRSS------VD------E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (392)
Q Consensus 69 ~~~~w~~l~~lG~-----~e~~gg~~~~~------~~------~--~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G 129 (392)
....|..+.++|+ |++++|.|... ++ . ++.+..|..+....|..+|+++||++|||++++|
T Consensus 111 ~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg 190 (634)
T KOG0137|consen 111 EETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASG 190 (634)
T ss_pred chhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcC
Confidence 3456777788776 88999887542 11 1 2223445556667788999999999999999999
Q ss_pred ceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCC----CCCceEEEE
Q 016297 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDG----QDHGVNGFI 205 (392)
Q Consensus 130 ~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~----~~~g~~~fl 205 (392)
+.+++||+|||..|||+..+.|+|+..++++.|+|| |.|.||+| +..||+++|+|++..++ ..+++++||
T Consensus 191 ~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Fl 264 (634)
T KOG0137|consen 191 KLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFL 264 (634)
T ss_pred CccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEE
Confidence 999999999999999999999999998889999999 99999999 89999999999987432 236799999
Q ss_pred EeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHH
Q 016297 206 VQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR 285 (392)
Q Consensus 206 V~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r 285 (392)
|+ ++-.|++-++...+|| .+++..++|.|++|.||.+++||. +|.++. +.+..+..+|
T Consensus 265 ve-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG~------~G~G~k------va~nilnsgR 322 (634)
T KOG0137|consen 265 VE-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLGK------PGDGFK------VAMNILNSGR 322 (634)
T ss_pred Ee-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcCC------CCcchH------HHHHHHccCC
Confidence 99 6788999999999999 999999999999999999999995 677776 6778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016297 286 QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAN 365 (392)
Q Consensus 286 ~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~ 365 (392)
+.+++..+|.++++++.+.+|+..|.|||. ++.+|-.+|.++++|...+|+.++++|..+..+|+..
T Consensus 323 ~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~------ 389 (634)
T KOG0137|consen 323 FGMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVG------ 389 (634)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc------
Confidence 999999999999999999999999999999 9999999999999999999999999999988887632
Q ss_pred CCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 366 DFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 366 ~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
..+.+..+++.|.++++.+..+
T Consensus 390 ----a~d~~lEaai~Ki~a~e~a~~v 411 (634)
T KOG0137|consen 390 ----AKDVQLEAAILKIFASEQAWAV 411 (634)
T ss_pred ----ceeeeehHHHHHHHhhhHHHHH
Confidence 2567888999999999988754
No 37
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=7.5e-39 Score=317.28 Aligned_cols=281 Identities=19% Similarity=0.194 Sum_probs=223.1
Q ss_pred HHHHHHHHHcCC----CHHHHHHH--hhh-----c-----CCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccc---
Q 016297 70 AYAWKRIIELRL----SEEEASML--RSS-----V-----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME--- 130 (392)
Q Consensus 70 ~~~w~~l~~lG~----~e~~gg~~--~~~-----~-----~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~--- 130 (392)
..+++.+.+.|| ++.+|+.+ ... + ...+|+.+|. .++.+|..+|+++|+ +|||++++|+
T Consensus 68 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~ 145 (418)
T cd01154 68 HALMRRLIEEGVINIEDGPAGEGRRHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKT 145 (418)
T ss_pred HHHHHHHHHcCCccCCchhhCCCcHHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCccc
Confidence 456777888887 23443322 111 1 1133444554 577889999988865 6999999997
Q ss_pred -eeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccC-CCCCceEEEEEee
Q 016297 131 -IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQL 208 (392)
Q Consensus 131 -~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~-~~~~g~~~flV~~ 208 (392)
+++|+++|||++|||+..++|+|++++ +|+|+|| |+|+|+|+ + .||+++|+|++++. ++..|+++|+||.
T Consensus 146 ~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~ 217 (418)
T cd01154 146 GLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GHKWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPR 217 (418)
T ss_pred chhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EEEEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEec
Confidence 899999999999999999999999764 6789999 99999999 8 99999999998753 3447899999995
Q ss_pred ccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHH
Q 016297 209 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 288 (392)
Q Consensus 209 ~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~ 288 (392)
+.++ ...|||++.+.|+++| ++++++++|.|+|| .+++||. .|.++. .+...+..+|+.+
T Consensus 218 ~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~~~~lG~------~g~G~~------~~~~~l~~~R~~~ 277 (418)
T cd01154 218 LLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---EAYLIGD------EGKGIY------YILEMLNISRLDN 277 (418)
T ss_pred cCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---CccccCC------CCccHH------HHHHHHHHHHHHH
Confidence 3211 1125999999999999 99999999999998 3778884 456654 5567888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 016297 289 VADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS 368 (392)
Q Consensus 289 aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~ 368 (392)
++.++|+++++++.+++|+++|++||+ ||+++|.+|++|++|.+.+++++++++.+++.++.... +...
T Consensus 278 aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~----~~~~ 346 (418)
T cd01154 278 AVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAA----DKPV 346 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----CChh
Confidence 999999999999999999999999999 99999999999999999999999999999988875310 0000
Q ss_pred CchhHHHHHhhHHHHhHHHHhhh
Q 016297 369 TLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 369 ~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
........++++|+++++.+.++
T Consensus 347 ~~~~~r~~~~~aK~~~~e~a~~v 369 (418)
T cd01154 347 EAHMARLATPVAKLIACKRAAPV 369 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112346788999999998875
No 38
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=3.8e-38 Score=308.94 Aligned_cols=283 Identities=18% Similarity=0.084 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHcCC-----CHHHHHHHhhhcCC------------chH--HHhhHhhhHHHHhcCCCHHHHHhhhhHhhc
Q 016297 68 KAAYAWKRIIELRL-----SEEEASMLRSSVDE------------PAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYK 128 (392)
Q Consensus 68 ~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------------~~~--~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~ 128 (392)
+..+.|+.|.++|| |+++||.+.++.+. +.+ +.+|. .....|..+|+++||++|++++++
T Consensus 23 ~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~ 101 (377)
T cd01163 23 LPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLN 101 (377)
T ss_pred CCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhC
Confidence 34578999999998 89999987654221 222 23443 335678889999999999999999
Q ss_pred cceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEee
Q 016297 129 MEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQL 208 (392)
Q Consensus 129 G~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~ 208 (392)
|+++ +++++||++|+ ...+.++++++ +|+|+|| |+|.|||+ +..||+++|+++++. .++.+|+||
T Consensus 102 g~~~-~~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~- 166 (377)
T cd01163 102 GWIF-GNAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP- 166 (377)
T ss_pred CCeE-EEeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe-
Confidence 9965 56999998876 66677777765 7899999 99999999 899999999998642 347889999
Q ss_pred ccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHH
Q 016297 209 RSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 288 (392)
Q Consensus 209 ~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~ 288 (392)
.+.|||++.+.|+++| ++++++++|+|+||+||.+++|+.. +.+.. ....+...++.+
T Consensus 167 ------~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~~------~~g~~-------~~~~~~~~~l~~ 224 (377)
T cd01163 167 ------TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPRP------NAPDR-------GTLLTAIYQLVL 224 (377)
T ss_pred ------CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCCC------ccccc-------cccccHHHHHHH
Confidence 7789999999999999 9999999999999999999999853 33221 011233578889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-ccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 016297 289 VADASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 367 (392)
Q Consensus 289 aa~~~G~~~~al~~a~~y~~~R~-qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~ 367 (392)
++.++|+++++++.+++|+++|+ +||+.... ++.++|.+|++|++|.++++++|++++.+++.+|+........++
T Consensus 225 aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ 301 (377)
T cd01163 225 AAVLAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTA 301 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCH
Confidence 99999999999999999999995 88873211 578999999999999999999999999999999875321000000
Q ss_pred CCchhHHHHHhhHHHHhHHHHhhh
Q 016297 368 STLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 368 ~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
....+....++++|.++++.+.++
T Consensus 302 ~~~~~~~~~~~~aK~~~~~~a~~~ 325 (377)
T cd01163 302 EARGEAALAVAAAKVVVTRLALDA 325 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234567889999999998876
No 39
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.2e-37 Score=307.07 Aligned_cols=241 Identities=17% Similarity=0.129 Sum_probs=202.7
Q ss_pred hhHHHHhcCCCHHHHHhhhhHhhccc-------------eeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCc
Q 016297 105 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (392)
Q Consensus 105 l~~~~i~~~g~~eq~~~~l~~l~~G~-------------~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G 171 (392)
.++..++.+|+++|+++|||++++|+ .++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 44566777799999999999999997 456999999999999999999999842 6789999 9
Q ss_pred ceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCc
Q 016297 172 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (392)
Q Consensus 172 ~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~ 251 (392)
+|+|+|+ ..||+++|+||++ .|+++|+||...++ ...+||++.+.++|+| ++++++++|.|+|| .
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~dv---~ 277 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQDA---I 277 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECCH---H
Confidence 9999995 6799999999984 47999999932110 0123899999999999 99999999999999 4
Q ss_pred ccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHH
Q 016297 252 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (392)
Q Consensus 252 ~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq 331 (392)
.++||. .|.++. .++..+...|+.+++.++|+++++++.+++|+++|++||+ ||+++|.+|
T Consensus 278 ~~llG~------~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~~q~vq 338 (538)
T PRK11561 278 GWLLGE------EGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIEQPLMR 338 (538)
T ss_pred HHHCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------ccccCHHHH
Confidence 788985 566665 5667888999999999999999999999999999999999 999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 332 ~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
++|++|.+.+++++++++++++.+|+.. +..........++++|.++++.+.++
T Consensus 339 ~~LAdm~~~ieaar~l~~~aa~~~d~~~------~~~~~~~~rl~t~~aK~~~~e~a~~v 392 (538)
T PRK11561 339 QVLSRMALQLEGQTALLFRLARAWDRRA------DAKEALWARLFTPAAKFVICKRGIPF 392 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997531 00001124566788999999988764
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.8e-35 Score=290.52 Aligned_cols=247 Identities=17% Similarity=0.132 Sum_probs=201.2
Q ss_pred HHHHHHHHc-CC-----CHHHHHHHhhhcCC------------chH--HHhhHhhhHHHHhcCCCHHHHHhhhhHhhccc
Q 016297 71 YAWKRIIEL-RL-----SEEEASMLRSSVDE------------PAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (392)
Q Consensus 71 ~~w~~l~~l-G~-----~e~~gg~~~~~~~~------------~~~--~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~ 130 (392)
.+.+.+.++ || ||++||.|.+.... +.+ +..|..++...|..+|+++||++|||++++|+
T Consensus 54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe 133 (520)
T PTZ00457 54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133 (520)
T ss_pred HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 344456777 66 89999988654221 212 22454466677888999999999999999999
Q ss_pred eeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEcc----C-C--CCCceEE
Q 016297 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDHGVNG 203 (392)
Q Consensus 131 ~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~----~-~--~~~g~~~ 203 (392)
.+++++++| ++|||+..++|+|++++ +|+|+|| |+|.|+ + +..||+++|+|+++. + + ...|+++
T Consensus 134 ~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git~ 204 (520)
T PTZ00457 134 IMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNSF 204 (520)
T ss_pred cEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceEE
Confidence 999999998 89999999999999753 4579999 999976 7 889999999999752 1 1 1257999
Q ss_pred EEEeeccCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHH
Q 016297 204 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283 (392)
Q Consensus 204 flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 283 (392)
|+|| .+.|||++.+ ++|+|+|| |.+++||. .|.++. ..+..+..
T Consensus 205 FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG~------~g~G~~------~a~~~L~~ 248 (520)
T PTZ00457 205 FICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVGV------VGEGFK------DAMITLFT 248 (520)
T ss_pred EEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCCC------CCchHH------HHHHHHHH
Confidence 9999 7889999852 47999997 99999985 455554 55677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016297 284 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (392)
Q Consensus 284 ~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~ 363 (392)
+|+.+++.++|+++++++.+++|++ +|.+||+|++|.+.++++|++++.+++.+|+..
T Consensus 249 ~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~---- 306 (520)
T PTZ00457 249 EQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDLPT---- 306 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999984 489999999999999999999999999997631
Q ss_pred cCCCCCchhHHHHHhhHHHHhH---HHHhhh
Q 016297 364 ANDFSTLPEAHACTAGLKSLTT---TATAVC 391 (392)
Q Consensus 364 ~~~~~~~~~~~~~~a~aK~~~~---~~a~~~ 391 (392)
.+.+..++++|++++ +.+..+
T Consensus 307 -------~d~~~eAa~ak~~~s~~~e~~~~~ 330 (520)
T PTZ00457 307 -------EDSLLECTLVSAFVQSTTNQLLSI 330 (520)
T ss_pred -------cccHHHHHHHHHHhhhhHHHHHHH
Confidence 346788999999999 665543
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=3.3e-32 Score=266.26 Aligned_cols=277 Identities=12% Similarity=0.003 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHcCC-----CHHHHHHHhhhcCC------------chHHHh-hHhhhHHHHhcCCCHHHHHhhhhHhhcc
Q 016297 68 KAAYAWKRIIELRL-----SEEEASMLRSSVDE------------PAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (392)
Q Consensus 68 ~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------------~~~~~~-~~~l~~~~i~~~g~~eq~~~~l~~l~~G 129 (392)
++.+.|+.|.++|| |+++||.+.+.... +..+.. ..++....+..+++++|++.|++.. .+
T Consensus 23 ~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 101 (370)
T cd01159 23 LPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGP-DT 101 (370)
T ss_pred CCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCC-Cc
Confidence 34568889999998 89999987653211 222211 1224455677789999988887642 11
Q ss_pred ceeeEEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEEccCCCCCceEEEEEeec
Q 016297 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLR 209 (392)
Q Consensus 130 ~~~~~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~~~~~~~~g~~~flV~~~ 209 (392)
...++ ..+.|+|+++ +|+|+|| |+|.|||+ +..||+++|.|++.++.+..++++|+||
T Consensus 102 ~~~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~-- 159 (370)
T cd01159 102 LLAGS------------YAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP-- 159 (370)
T ss_pred eEEee------------ecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE--
Confidence 11111 2356788877 7899999 99999999 8999999999997543334578999999
Q ss_pred cCCCCCCCCCeEEeccCCcccCCccCCCCceeEEecceecCcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHH
Q 016297 210 SLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIV 289 (392)
Q Consensus 210 ~~~~~~~~~Gv~i~~~~~~~G~~~~~~~~~~~v~f~~v~Vp~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~a 289 (392)
.+ ||++.+.|+++| ++++++++|.|+||+||.+++|+........+.+..... .......++++.++
T Consensus 160 -----~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~a 226 (370)
T cd01159 160 -----RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPV---YRMPLRQVFPLSFA 226 (370)
T ss_pred -----hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCCcc---ccCchHHHHHHHHH
Confidence 44 999999999999 999999999999999999999974211000111110000 11123446788999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc---CCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016297 290 ADASCALSRAVCIATRYSAVRRQF---GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (392)
Q Consensus 290 a~~~G~~~~al~~a~~y~~~R~qf---G~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~ 366 (392)
+.++|+++++++.+++|+++|.+| |+ ||+++|.+|++|++|.+.+++++++++.+++.+++.... +.
T Consensus 227 a~~lG~a~~~l~~~~~~~~~R~~~~~~g~-------~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~~ 296 (370)
T cd01159 227 AVSLGAAEGALAEFLELAGKRVRQYGAAV-------KMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---GG 296 (370)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCCcc-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 999999999999999999999998 56 899999999999999999999999999999999875321 11
Q ss_pred CCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 367 FSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 367 ~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
. ...+....++++|+++++.+.++
T Consensus 297 ~-~~~~~~~~~~~aK~~~~e~~~~~ 320 (370)
T cd01159 297 P-IDVEERARIRRDAAYAAKLSAEA 320 (370)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11334567888999999988765
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=238.89 Aligned_cols=237 Identities=20% Similarity=0.288 Sum_probs=202.1
Q ss_pred HHHhcCCCHHHHHhhhhHhhccceeeEEeccCCC-CCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCC--CCCc
Q 016297 108 PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KVST 184 (392)
Q Consensus 108 ~~i~~~g~~eq~~~~l~~l~~G~~~~~~a~tE~~-~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a--~~Ad 184 (392)
..|..||++|||.+||.++..|++..|||+|||. +.||+.++++..+++ ++.|+|| |+|||+|| + +.+.
T Consensus 90 Evl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sg-a~~PkCr 161 (392)
T KOG1469|consen 90 EVLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISG-AGDPKCR 161 (392)
T ss_pred eehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecC-CCCCceE
Confidence 3678899999999999999999999999999998 568999999999988 8999999 99999998 4 4577
Q ss_pred EEEEEEEEccC--CCCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCC--CceeEEecceecCcccccccccc
Q 016297 185 HAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVSQ 260 (392)
Q Consensus 185 ~~~V~A~~~~~--~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~--~~~~v~f~~v~Vp~~~ll~~~~~ 260 (392)
+++++.+++.. ..+...++.||| .+.|||.|.+.....| +... +..+|+|+||+||..++|-.
T Consensus 162 v~i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG--- 228 (392)
T KOG1469|consen 162 IAIFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG--- 228 (392)
T ss_pred EEEEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec---
Confidence 88888888764 234557899999 6899999988888888 4433 46789999999999998742
Q ss_pred cCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHH
Q 016297 261 VTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLAS 340 (392)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~ 340 (392)
+|.++. +.++.|..+|+..|.-.+|.++++++...+.+.+|..||+ +|..+..+.+-+|+..++
T Consensus 229 ---eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRve 292 (392)
T KOG1469|consen 229 ---EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVE 292 (392)
T ss_pred ---CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhH
Confidence 577765 4556677899999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 341 AYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 341 ~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+|.+|+++..|++.+|..-. ..+....++.|+.+..++..+
T Consensus 293 iEqaRLLvLkAAh~mD~~G~----------k~Ak~~iAMiKv~AP~ma~ki 333 (392)
T KOG1469|consen 293 IEQARLLVLKAAHSMDTLGN----------KGAKKEIAMIKVAAPNMASKI 333 (392)
T ss_pred hhhhhhhhhhhhhhhhhhcc----------hhhhhheeeeeecCcHHHHHH
Confidence 99999999999999987642 334455677777776666543
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.84 E-value=1e-19 Score=181.47 Aligned_cols=234 Identities=7% Similarity=0.039 Sum_probs=173.7
Q ss_pred hcCCCHH--HHHhhhhHhhccceeeEEeccCCCCC-C----CcC--CCceEEEEeCCCCeEEEecCCCCcceeccCCCCC
Q 016297 111 KGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181 (392)
Q Consensus 111 ~~~g~~e--q~~~~l~~l~~G~~~~~~a~tE~~~g-s----d~~--~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~ 181 (392)
..++++- --.+|+..+.+..+..+-+++.|..- | ... .+-...+. +.+|||+|| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve-~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVE-QTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEE-EcCCCEEEe-----CHHHhhhh-c-
Confidence 3444432 24578999999999999999988632 2 111 12223332 237899999 99999999 7
Q ss_pred CCcEEEEEEEEccCCCC-Cc--eEEEEEeeccCCCCCCCCCeEEeccCCcccCCccCCC-----------CceeEEecce
Q 016297 182 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 247 (392)
Q Consensus 182 ~Ad~~~V~A~~~~~~~~-~g--~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~~~~~~-----------~~~~v~f~~v 247 (392)
.||.++|++++...++. .+ ...|+|| .++|||++.....++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999987653222 33 6899999 8999999988878888 6655 5688999999
Q ss_pred ecCcccc--cccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Q 016297 248 RIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (392)
Q Consensus 248 ~Vp~~~l--l~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~ 325 (392)
+||.+++ +|.... .+.++. .. ..++..+..++|.+..+++.++.|++. .+||. ++.
T Consensus 261 ~VPwe~VF~~g~~e~---a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~ 318 (477)
T TIGR02309 261 LVPWERIFILGDVEL---CNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GAD 318 (477)
T ss_pred eccHHHhhhcCCHHH---HHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Ccc
Confidence 9999999 774210 022221 11 123556888899999999999999999 99999 999
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 326 ~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+||+||++|++|.+.++++|++++.+++..+... ..........++++|.++++.+.++
T Consensus 319 ~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~-------~G~~~P~~~~as~aKl~~~e~~~rv 377 (477)
T TIGR02309 319 GFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENA-------YGLMTPDRGALDAARNLYPRLYPRL 377 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC-------CCcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988665421 0000012456899999999988764
No 44
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.47 E-value=6.5e-14 Score=96.53 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.1
Q ss_pred EEeccCCCCCCCcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEEE
Q 016297 134 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 192 (392)
Q Consensus 134 ~~a~tE~~~gsd~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~~ 192 (392)
|||+|||++|+|+..++|+|+++ +++|+|| |+|+||++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 68999999999999999999998 8899999 99999999 9999999999997
No 45
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.33 E-value=9.3e-12 Score=102.57 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=91.6
Q ss_pred CHHHHHHHhcCChhhHHHHHHHHHHHHcCCCCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHH----HH
Q 016297 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEE----AS 87 (392)
Q Consensus 17 ~~~~~~~~~~~~~e~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~~----e~~----gg 87 (392)
|+++|+.+|+|++++.+.|.++.+++.++|.|.. .+....++++.+.........+++.+.+.+|. ... +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7899999999999999999999999999999987 56678999999999999999999999999983 222 22
Q ss_pred HHhhhcCCchHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhcccee
Q 016297 88 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (392)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~~~ 132 (392)
....+++.+.|+.+|+++|.++|...||+||+++|||...+.+++
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 346667778889999999999999999999999999999888764
No 46
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.27 E-value=2.5e-11 Score=102.88 Aligned_cols=97 Identities=23% Similarity=0.117 Sum_probs=87.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 016297 276 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355 (392)
Q Consensus 276 ~~~~~l~~~r~~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~ 355 (392)
++...+..+|+.+++.++|.++.+++.+++|+++|++||+ |+.++|.++++++++.+.+++++++++++++.+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 5677888999999999999999999999999999999999 999999999999999999999999999999988
Q ss_pred HHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhhh
Q 016297 356 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAVC 391 (392)
Q Consensus 356 d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~~ 391 (392)
+... .....++++|.++++.+.++
T Consensus 79 ~~~~------------~~~~~~a~~K~~~t~~~~~~ 102 (150)
T PF00441_consen 79 DAGQ------------NDPVEAAIAKYFATELAQDI 102 (150)
T ss_dssp HTTS------------STHHHHHHHHHHHHHHHHHH
T ss_pred cccc------------ccccccchhhhhcccccccc
Confidence 6531 12667888999999998765
No 47
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.93 E-value=5.2e-10 Score=90.20 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHhhhcCC-------
Q 016297 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (392)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~lG~-----~e~~gg~~~~~~~~------- 95 (392)
||+|.+|++++++|+.++.. + .....+....++.+.|+.+.+.|| |+++||.+.+....
T Consensus 1 t~~~~~l~~~~~~~~~~~~~--~-------~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA--P-------HAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH--H-------HHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch--H-------HHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 58999999999999987541 0 011111222456778999999998 79999887543221
Q ss_pred -----c--hHHHhhHhhhHHHHhcCCCHHHHHhhhhHhhccc
Q 016297 96 -----P--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (392)
Q Consensus 96 -----~--~~~~~~~~l~~~~i~~~g~~eq~~~~l~~l~~G~ 130 (392)
+ ..+.+|.++++.+|..+|+++||++|||++++||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 2 2345666677789999999999999999999996
No 48
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=98.69 E-value=2.7e-07 Score=76.82 Aligned_cols=96 Identities=17% Similarity=-0.030 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCCCCCCCccccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016297 286 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (392)
Q Consensus 286 ~~~aa~~~G~~~~al~~a~~y~~~R~q--fG~~~~~~~~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~ 363 (392)
+.+++.++|+++++++.+++|++.|.. .+. ++.+.|.+|.+++++.+.+++++++++.++..+++....
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~-- 71 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADA-- 71 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 467899999999999999999999887 445 999999999999999999999999999999988765432
Q ss_pred cCCCCCchhHHHHHhhHHHHhHHHHhhhC
Q 016297 364 ANDFSTLPEAHACTAGLKSLTTTATAVCY 392 (392)
Q Consensus 364 ~~~~~~~~~~~~~~a~aK~~~~~~a~~~i 392 (392)
++.. .++........|.++.+.+.+++
T Consensus 72 -g~~~-~~~~~~~~~~~~~~a~~~a~~av 98 (134)
T PF08028_consen 72 -GEEL-TPEERARLRAAKAHAARLAREAV 98 (134)
T ss_dssp -T-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 25667778888999999988763
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=1.3e-05 Score=78.26 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=117.8
Q ss_pred CCCHH--HHHhhhhHhhccceeeEEeccCCCCC-C----CcC--CCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCC
Q 016297 113 QGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183 (392)
Q Consensus 113 ~g~~e--q~~~~l~~l~~G~~~~~~a~tE~~~g-s----d~~--~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~A 183 (392)
+|++- --.+|+..+.......+-|+|.|..- | ... .+-...+. +.++|.++. |.|..+|+ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 45543 33579999999998888899987532 1 111 23333332 226899999 99999999 8999
Q ss_pred cEEEEE-EEEccCCCCCceEEEEEeeccCCCCCCCCCeEEeccCC-cccCCccCCCC------------ceeEEecceec
Q 016297 184 THAVVY-ARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM-KFGNGAYNTMD------------NGVLRFEHVRI 249 (392)
Q Consensus 184 d~~~V~-A~~~~~~~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~-~~G~~~~~~~~------------~~~v~f~~v~V 249 (392)
|..+|+ .+.-...+.+=-..|.+| .++|||.+--... ..+ .++.+.+ -+-|.||||+|
T Consensus 198 dei~V~Pt~~~~~~d~dfAv~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVfV 269 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDFAVAFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVFV 269 (493)
T ss_pred ceEEEeeccccCCCCCceEEEEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEeccccc
Confidence 999988 332222212223578999 7899987633221 111 0011111 23499999999
Q ss_pred CcccccccccccCCCCeEEecCchhhHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhcccCCCCCCCCccccc
Q 016297 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSR---AVCIATRYSAVRRQFGSKNGGPETQVID 326 (392)
Q Consensus 250 p~~~ll~~~~~~~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~---al~~a~~y~~~R~qfG~~~~~~~~~i~~ 326 (392)
|-++++=- . +-.... .......+..+.|...+....+.+.- +....+++. -+.+
T Consensus 270 PWERVf~y-~----d~~~~~---~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~---------------Gv~~ 326 (493)
T COG2368 270 PWERVFIY-R----DLERAY---AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAETN---------------GVEE 326 (493)
T ss_pred chhheeee-c----cHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh---------------Cccc
Confidence 99998731 0 111000 00011111112232222222222221 122222221 3467
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 016297 327 YKTQQNRLFPLLASAYAFRFVGEWLKWL 354 (392)
Q Consensus 327 ~q~vq~~la~~~~~~~~a~~~~~~aa~~ 354 (392)
|++||.+|++|.+-.+.+.++...++.-
T Consensus 327 ~~hIq~kl~Emi~~~e~~~al~~Aa~~~ 354 (493)
T COG2368 327 FRHIQEKLGEMIALLELMWALSDAAAEE 354 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887777653
No 50
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.30 E-value=4.1e-05 Score=77.03 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=110.5
Q ss_pred HHhhhhHhhccceeeEEeccCCCCC-C----CcCCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEE-EEEE
Q 016297 119 HQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YARL 192 (392)
Q Consensus 119 ~~~~l~~l~~G~~~~~~a~tE~~~g-s----d~~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V-~A~~ 192 (392)
-.+|+..+.+..+..+-+++.|..- | ....+-...+. +.++|.+++ |.|...|+ +..+|.++| ....
T Consensus 138 ~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~~ 210 (519)
T TIGR02310 138 ARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGSA 210 (519)
T ss_pred HHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCcc
Confidence 4578999999999999999988532 2 11122223332 226899999 99999998 899999888 4432
Q ss_pred ccCCCCCc-eEEEEEeeccCCCCCCCCCeEEeccCCc-ccC----CccC-------CCCceeEEecceecCccccccccc
Q 016297 193 ITDGQDHG-VNGFIVQLRSLEDHSPLPGITIGDIGMK-FGN----GAYN-------TMDNGVLRFEHVRIPRNQMLMRVS 259 (392)
Q Consensus 193 ~~~~~~~g-~~~flV~~~~~~~~~~~~Gv~i~~~~~~-~G~----~~~~-------~~~~~~v~f~~v~Vp~~~ll~~~~ 259 (392)
..-++... -..|.|| .++|||++--.... ++. ...+ .-.-+-|.||||+||-++++-- +
T Consensus 211 ~~~~~d~dyAvaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~-g 282 (519)
T TIGR02310 211 QIIGDNDDFALMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY-R 282 (519)
T ss_pred cccCCCCCeEEEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec-C
Confidence 11011222 3468999 79999987532211 000 0000 0112459999999999998731 0
Q ss_pred ccCCCC-eEEecCchhhHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHhhHHH
Q 016297 260 QVTREG-KYVQSNVPRQLLYGTMVYVRQ-TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPL 337 (392)
Q Consensus 260 ~~~~~g-~~~~~~~~~~~~~~~l~~~r~-~~aa~~~G~~~~al~~a~~y~~~R~qfG~~~~~~~~~i~~~q~vq~~la~~ 337 (392)
.+.... ......+.. .+......|. ..+=..+|++..+ +++ -| +..|++||.+|++|
T Consensus 283 d~e~~~~~~~~~~~~~--~~~~q~~~r~~~k~dfl~G~a~~~----ae~------~G---------~~~~~hVqekl~El 341 (519)
T TIGR02310 283 DFERCRTWAQYGGFAR--LFPMQACTRLAVKLDFITGLLHKA----LQC------TG---------VLEFRGVQAQMGEV 341 (519)
T ss_pred CHHHHHhHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH----HHH------hC---------cccchHHHHHHHHH
Confidence 000000 000100000 0000000111 1111222222222 222 23 34699999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016297 338 LASAYAFRFVGEWLKW 353 (392)
Q Consensus 338 ~~~~~~a~~~~~~aa~ 353 (392)
.+..|..+++...+..
T Consensus 342 i~~~E~~~a~~~Aa~~ 357 (519)
T TIGR02310 342 VAWRNLFWTLTDAMAG 357 (519)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988776654
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.64 E-value=0.00044 Score=63.77 Aligned_cols=124 Identities=13% Similarity=0.191 Sum_probs=73.5
Q ss_pred HHHhhhhHhhccceeeEEeccCCCCC-CC-c----CCCceEEEEeCCCCeEEEecCCCCcceeccCCCCCCCcEEEEEEE
Q 016297 118 QHQKWLPLAYKMEIIGCYAQTELGHG-SN-V----QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 191 (392)
Q Consensus 118 q~~~~l~~l~~G~~~~~~a~tE~~~g-sd-~----~~~~t~a~~~~~~~~~~Ln~p~~~G~K~~v~~~a~~Ad~~~V~A~ 191 (392)
--.+|+..+.+..+..+-+++.|..- |- + ..+-...+.. ..+|.+|+ |.|...|+ +..+|.++|+-.
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEeec
Confidence 34678999999999999999998621 11 1 1133333322 26899999 99999998 999999999754
Q ss_pred EccCC-CCCceEEEEEeeccCCCCCCCCCeEEeccCCcccCC--ccC--CCC-----ceeEEecceecCccccc
Q 016297 192 LITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG--AYN--TMD-----NGVLRFEHVRIPRNQML 255 (392)
Q Consensus 192 ~~~~~-~~~g~~~flV~~~~~~~~~~~~Gv~i~~~~~~~G~~--~~~--~~~-----~~~v~f~~v~Vp~~~ll 255 (392)
..-.+ +..=-..|.|| .++||+++--........ ... .+. -+-|.||||+||.++++
T Consensus 197 ~~~~~~d~dyAv~FavP-------~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDYAVAFAVP-------MNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG-EEEEEE-------TT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCceEEEEEcc-------CCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 32222 22224579999 899999875432222100 011 111 24599999999998874
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=85.65 E-value=4 Score=41.79 Aligned_cols=57 Identities=19% Similarity=0.026 Sum_probs=41.8
Q ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhh
Q 016297 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAV 390 (392)
Q Consensus 323 ~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~ 390 (392)
.|.+-|.+..||+|+.+.+|++-+.+-++...+.+.. +........++++|.++..+
T Consensus 432 ~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~-----------~~~~~e~~la~~fc~~a~~r 488 (520)
T PTZ00457 432 QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGL-----------PSAKVEGELASAFIAMAVSR 488 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887777766654321 12222245778888777654
No 53
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=59.41 E-value=64 Score=33.24 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=45.7
Q ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhh
Q 016297 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAV 390 (392)
Q Consensus 323 ~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~ 390 (392)
-|.+.|.+-+|||+..+.+|++-+..-+|.+.+.... +......+.++++|+++..+
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl-----------~~aDhEl~~at~~C~ea~~~ 592 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGL-----------PNADHELALATAICSEASLR 592 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCC-----------cchhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999888888877764432 34445677888899887654
No 54
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=45.22 E-value=33 Score=30.54 Aligned_cols=60 Identities=8% Similarity=-0.088 Sum_probs=37.3
Q ss_pred ccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHhHHHHhh
Q 016297 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATAV 390 (392)
Q Consensus 324 i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~~~~~a~~ 390 (392)
+..+++||.+|+++....|..++++..+...-.. ........-.....++|.+..+..-+
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~-------~~~G~~~P~~~~~~a~r~~~~~~y~r 103 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAEP-------DPSGVYVPNPLPLNAARNYFPKNYPR 103 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE--------TTSSEE--HHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-------CCCCeEeECHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999988766442211 01111111234466777777665543
Done!