BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016298
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 71.6 bits (174), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194
+G EC+VCL E ++ E R LP+C H FH C+D WL SH CP+CR +V
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE-TVTAPLA 203
G EC VC ++ E+VR LP CNH FH SCI WL H +CP+CR + + T T P
Sbjct: 15 GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG 73
Query: 204 TTA 206
T
Sbjct: 74 LTG 76
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 135 RYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191
R+ E T C VC+ +F+ + +R+LP CNH FH C+D WL ++ CP+CRA
Sbjct: 13 RFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
+C++CL+ +E E VR LP C H FH C+D WL ++ CP+CR I
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195
C+VCL +F+ + + + P C HAFH C+ WL CP+C ++
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
C +C +E+ + + LP C+H FH C+ WL CP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAP 201
L + EC +C+ D L+ C H+F CID W H NCP+CR +
Sbjct: 12 LTDEEECCICM-----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM-------- 58
Query: 202 LATTANQNSDSSS 214
T AN++S SS
Sbjct: 59 --TGANESSGPSS 69
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTA 206
+C +C F E T+ C H+F CI+ W+ I CP+CR I +T + L
Sbjct: 55 QCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNXI 110
Query: 207 NQ 208
N+
Sbjct: 111 NK 112
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190
C C E ++++ V + +CNH+FH C+ W+ + CP+C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTA 206
+C +C F E T+ C H+F CI+ W+ I CP+CR I +T + L
Sbjct: 55 QCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 110
Query: 207 NQ 208
N+
Sbjct: 111 NK 112
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVTAPLATTA 206
+C +C F E T+ C H+F CI+ W+ I CP+CR I +T + L
Sbjct: 66 QCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 121
Query: 207 NQ 208
N+
Sbjct: 122 NK 123
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHI-VHET 197
E + E C +C + ++ RL P C+ SCI WL+ CP CRA + + E
Sbjct: 17 ESIAEVFRCFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73
Query: 198 VTAPLATTANQNSDSSSL-AVDNHTE 222
V A Q D+ L ++ H E
Sbjct: 74 VNCRWAEEVTQQLDTLQLCSLTKHEE 99
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 47 VVDNCAICRNHIMDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 103
Query: 187 PM 188
P+
Sbjct: 104 PL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 28 VVDNCAICRNHIMDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 84
Query: 187 PM 188
P+
Sbjct: 85 PL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 38 VVDNCAICRNHIMDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 94
Query: 187 PM 188
P+
Sbjct: 95 PL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 20 VVDNCAICRNHIMDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 76
Query: 187 PM 188
P+
Sbjct: 77 PL 78
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 140 EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN---CPMC 189
+ L E EC +C+ F E++ L C H C++ L+S IN CP C
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 36 VVDNCAICRNHIXDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92
Query: 187 PM 188
P+
Sbjct: 93 PL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINC 186
V+++ +CR + IE C +E CNHAFH CI WL + C
Sbjct: 36 VVDNCAICRNHIMDLCIE---CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92
Query: 187 PM 188
P+
Sbjct: 93 PL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 167 CNHAFHISCIDTWLSSHINCPM 188
CNHAFH CI WL + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189
C +CL + V + C H H +C + L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 128 INSITVCRYKKGEGLIEGTE----CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH 183
++S+ R+ G +++ + C +C F ++P+C+H + CI +LS
Sbjct: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYK 57
Query: 184 INCPMCRAHIVHETVTAP 201
CP C TVT P
Sbjct: 58 TQCPTCCV-----TVTEP 70
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189
C +CL + V + C H H +C + L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193
C +CL ++ + C HAF CI W+ + CP+C+ +
Sbjct: 7 RCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL----SSHINCPMCR 190
C VC + ++D+ + L +CN AFH+ C+ L CP C+
Sbjct: 3 CKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 148 CSVCLNEFQED-ETVRLL--PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
C +C++ + E + RL+ +C H F C+ L + CP CR I H+
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCR 190
C +C D+ + + +C+ AFHI C+D LSS CP CR
Sbjct: 193 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 164 LPKCNHAFHISCIDTWLSS-----HINCPMCRAHIVHETVTAP 201
L KC+HAFH+ C+ + + CP C+ +T T P
Sbjct: 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP 100
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCR 190
C +C D+ + + +C+ AFHI C+D LSS CP CR
Sbjct: 177 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 148 CSVCLNEFQED-ETVRLL--PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
C +C++ + E + RL+ +C H F C+ L + CP CR I H+
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197
C +C F + T+ +C H+F +CI +L + CP+C VH+T
Sbjct: 14 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQ-VHKT 59
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 120 TVGLQQSVINSITVCRYKKGEGLIEG--TECSVCLNEFQEDETVRLLPKCNHAFHISCID 177
TVG++ SV S + R++ E ++ E + C+ E +L K ++ FH +C+D
Sbjct: 212 TVGMRASVETS-PLLRFR-AESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFHATCLD 269
Query: 178 TWLS-SHINCPMCR-AHIVHE 196
T+ S++N R H+VH
Sbjct: 270 TFPPISYLNAISWRIIHLVHR 290
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197
C +C F + T+ +C H+F +CI +L + CP+C VH+T
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQ-VHKT 63
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197
C +C F + T+ +C H+F +CI +L + CP+C VH+T
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQ-VHKT 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 148 CSVCLNEFQED-ETVRLL--PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
C +C++ + E + RL+ +C H F C+ L + CP CR I H+
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 148 CSVCLNEFQED-ETVRLL--PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
C +C++ + E + RL+ +C H F C+ L + CP CR I H+
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 146 TECSVCLNEFQED-ETVRLL--PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196
C +C++ + E + RL+ +C H F C+ L + CP CR I H+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,186,800
Number of Sequences: 62578
Number of extensions: 356134
Number of successful extensions: 691
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 47
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)