Query 016298
Match_columns 392
No_of_seqs 427 out of 1840
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 5.1E-18 1.1E-22 168.4 10.3 78 121-199 205-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 2.6E-14 5.6E-19 101.7 1.5 44 146-190 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 8.1E-12 1.8E-16 119.2 4.8 75 120-194 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.1E-11 2.4E-16 97.9 2.7 45 145-190 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.2 3.3E-11 7.2E-16 119.3 5.9 72 123-197 267-348 (491)
6 COG5540 RING-finger-containing 99.1 3.4E-11 7.4E-16 116.6 3.4 51 144-195 322-373 (374)
7 cd00162 RING RING-finger (Real 98.8 2.3E-09 5.1E-14 74.3 3.6 44 147-193 1-45 (45)
8 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.8E-09 4E-14 78.7 2.3 46 145-194 2-48 (50)
9 PF12861 zf-Apc11: Anaphase-pr 98.8 2.7E-09 5.9E-14 86.2 3.0 52 144-195 20-83 (85)
10 PLN03208 E3 ubiquitin-protein 98.7 1.2E-08 2.6E-13 94.3 5.0 52 144-199 17-84 (193)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 5.8E-09 1.3E-13 72.3 2.2 39 148-189 1-39 (39)
12 KOG0802 E3 ubiquitin ligase [P 98.7 6.2E-09 1.3E-13 110.7 1.6 52 144-196 290-343 (543)
13 KOG0317 Predicted E3 ubiquitin 98.7 8.2E-09 1.8E-13 99.9 2.2 49 145-197 239-287 (293)
14 PHA02926 zinc finger-like prot 98.7 8E-09 1.7E-13 96.8 1.8 55 141-195 166-231 (242)
15 COG5194 APC11 Component of SCF 98.6 1.9E-08 4.2E-13 79.8 2.0 52 145-196 20-83 (88)
16 PF14634 zf-RING_5: zinc-RING 98.5 6.3E-08 1.4E-12 68.9 2.8 44 147-191 1-44 (44)
17 KOG0823 Predicted E3 ubiquitin 98.5 4.8E-08 1E-12 92.1 2.5 53 145-201 47-102 (230)
18 smart00184 RING Ring finger. E 98.5 8.4E-08 1.8E-12 64.1 2.8 38 148-189 1-39 (39)
19 PF00097 zf-C3HC4: Zinc finger 98.5 5.1E-08 1.1E-12 67.9 1.6 39 148-189 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 98.5 6.2E-08 1.3E-12 88.0 2.0 51 145-197 131-181 (187)
21 smart00504 Ubox Modified RING 98.4 1.8E-07 3.8E-12 70.7 3.8 48 146-197 2-49 (63)
22 PF15227 zf-C3HC4_4: zinc fing 98.4 1.1E-07 2.5E-12 67.2 2.2 38 148-189 1-42 (42)
23 TIGR00599 rad18 DNA repair pro 98.3 4.3E-07 9.4E-12 92.8 4.0 51 142-196 23-73 (397)
24 KOG2930 SCF ubiquitin ligase, 98.3 2.1E-07 4.6E-12 77.3 0.7 52 144-195 45-109 (114)
25 KOG1493 Anaphase-promoting com 98.2 1.6E-07 3.4E-12 74.1 -0.8 50 145-194 20-81 (84)
26 KOG0828 Predicted E3 ubiquitin 98.2 2.8E-06 6.1E-11 87.4 5.9 51 144-195 570-635 (636)
27 smart00744 RINGv The RING-vari 98.1 2.4E-06 5.3E-11 62.4 2.6 42 147-190 1-49 (49)
28 COG5219 Uncharacterized conser 98.1 7.5E-07 1.6E-11 97.0 -0.5 73 122-194 1446-1523(1525)
29 PF13445 zf-RING_UBOX: RING-ty 98.0 3E-06 6.5E-11 60.3 2.0 34 148-183 1-35 (43)
30 COG5574 PEX10 RING-finger-cont 98.0 3.4E-06 7.4E-11 81.0 2.1 51 144-198 214-266 (271)
31 KOG1734 Predicted RING-contain 97.9 2.5E-06 5.3E-11 82.1 0.6 53 143-196 222-283 (328)
32 PF11793 FANCL_C: FANCL C-term 97.8 4.5E-06 9.7E-11 65.5 0.7 50 145-194 2-66 (70)
33 KOG2164 Predicted E3 ubiquitin 97.8 9.9E-06 2.2E-10 84.0 2.6 52 145-200 186-242 (513)
34 KOG0287 Postreplication repair 97.8 7.5E-06 1.6E-10 81.0 1.2 50 144-197 22-71 (442)
35 KOG2177 Predicted E3 ubiquitin 97.7 1.1E-05 2.4E-10 75.9 1.5 44 144-191 12-55 (386)
36 KOG0804 Cytoplasmic Zn-finger 97.7 1.4E-05 3E-10 81.6 2.2 52 140-194 170-222 (493)
37 PF04564 U-box: U-box domain; 97.7 1.3E-05 2.9E-10 63.1 1.6 50 145-198 4-54 (73)
38 TIGR00570 cdk7 CDK-activating 97.7 2.4E-05 5.2E-10 77.4 3.7 52 145-197 3-57 (309)
39 COG5432 RAD18 RING-finger-cont 97.6 1.9E-05 4.2E-10 76.7 1.6 50 142-195 22-71 (391)
40 KOG0827 Predicted E3 ubiquitin 97.6 2.9E-05 6.3E-10 78.1 1.6 51 146-196 5-58 (465)
41 KOG4265 Predicted E3 ubiquitin 97.4 9.1E-05 2E-09 74.1 3.0 49 144-196 289-338 (349)
42 KOG0825 PHD Zn-finger protein 97.3 4.7E-05 1E-09 82.1 -0.3 50 145-195 123-172 (1134)
43 KOG1039 Predicted E3 ubiquitin 97.3 0.00011 2.4E-09 74.0 2.3 52 144-195 160-222 (344)
44 PF14835 zf-RING_6: zf-RING of 97.1 0.00012 2.6E-09 56.3 0.4 49 145-198 7-55 (65)
45 KOG1645 RING-finger-containing 97.1 0.00029 6.4E-09 71.5 2.7 48 145-192 4-54 (463)
46 KOG4445 Uncharacterized conser 97.1 0.00019 4.1E-09 70.3 1.2 56 144-200 114-192 (368)
47 KOG0311 Predicted E3 ubiquitin 97.0 8.9E-05 1.9E-09 74.0 -2.1 50 144-196 42-92 (381)
48 KOG0824 Predicted E3 ubiquitin 96.9 0.00044 9.6E-09 67.8 2.4 53 145-201 7-60 (324)
49 KOG4172 Predicted E3 ubiquitin 96.9 0.00032 7E-09 52.2 0.6 46 145-194 7-54 (62)
50 KOG1785 Tyrosine kinase negati 96.6 0.0011 2.4E-08 67.2 2.6 46 147-196 371-418 (563)
51 KOG0978 E3 ubiquitin ligase in 96.5 0.00091 2E-08 72.6 0.9 50 145-198 643-693 (698)
52 KOG4159 Predicted E3 ubiquitin 96.5 0.0016 3.4E-08 67.0 2.6 50 142-195 81-130 (398)
53 KOG0297 TNF receptor-associate 96.3 0.0023 4.9E-08 65.9 2.3 51 143-196 19-69 (391)
54 PF05883 Baculo_RING: Baculovi 96.2 0.0013 2.9E-08 57.7 0.4 38 145-183 26-69 (134)
55 KOG1941 Acetylcholine receptor 96.1 0.0018 3.8E-08 65.7 0.5 46 145-191 365-413 (518)
56 KOG3970 Predicted E3 ubiquitin 96.0 0.005 1.1E-07 58.3 3.2 51 145-197 50-108 (299)
57 KOG0801 Predicted E3 ubiquitin 96.0 0.002 4.3E-08 58.2 0.5 29 144-173 176-204 (205)
58 PHA02862 5L protein; Provision 95.7 0.0055 1.2E-07 54.4 1.9 51 145-200 2-59 (156)
59 PF11789 zf-Nse: Zinc-finger o 95.6 0.0075 1.6E-07 45.5 2.1 42 144-188 10-53 (57)
60 PF12906 RINGv: RING-variant d 95.5 0.0081 1.7E-07 43.5 1.7 40 148-189 1-47 (47)
61 KOG1428 Inhibitor of type V ad 95.4 0.0086 1.9E-07 68.7 2.5 69 127-196 3467-3546(3738)
62 PF10367 Vps39_2: Vacuolar sor 95.0 0.0091 2E-07 49.3 0.8 32 144-177 77-108 (109)
63 KOG2660 Locus-specific chromos 95.0 0.0061 1.3E-07 60.7 -0.3 50 144-196 14-63 (331)
64 PHA02825 LAP/PHD finger-like p 94.7 0.025 5.4E-07 51.1 3.0 49 144-197 7-62 (162)
65 KOG1002 Nucleotide excision re 94.4 0.017 3.7E-07 60.7 1.3 51 142-196 533-588 (791)
66 KOG2879 Predicted E3 ubiquitin 94.3 0.042 9E-07 53.6 3.6 48 144-194 238-287 (298)
67 PF14570 zf-RING_4: RING/Ubox 94.2 0.036 7.8E-07 40.4 2.3 45 148-193 1-47 (48)
68 PHA03096 p28-like protein; Pro 94.1 0.023 4.9E-07 56.2 1.5 46 146-191 179-231 (284)
69 KOG3039 Uncharacterized conser 94.1 0.04 8.7E-07 53.0 3.0 54 146-199 222-275 (303)
70 KOG1952 Transcription factor N 94.1 0.023 5.1E-07 62.6 1.5 49 145-193 191-246 (950)
71 COG5152 Uncharacterized conser 94.0 0.023 4.9E-07 53.1 1.2 45 145-193 196-240 (259)
72 KOG1814 Predicted E3 ubiquitin 94.0 0.024 5.2E-07 58.0 1.4 46 145-191 184-237 (445)
73 KOG1571 Predicted E3 ubiquitin 92.6 0.055 1.2E-06 54.6 1.5 44 144-194 304-347 (355)
74 KOG1813 Predicted E3 ubiquitin 92.5 0.042 9.1E-07 54.1 0.5 46 145-194 241-286 (313)
75 COG5222 Uncharacterized conser 92.4 0.1 2.2E-06 51.6 2.9 52 145-199 274-327 (427)
76 KOG0826 Predicted E3 ubiquitin 92.1 0.23 4.9E-06 49.7 5.0 47 144-193 299-345 (357)
77 KOG4692 Predicted E3 ubiquitin 91.9 0.16 3.5E-06 51.2 3.8 49 143-195 420-468 (489)
78 PF08746 zf-RING-like: RING-li 91.3 0.1 2.2E-06 37.1 1.1 41 148-189 1-43 (43)
79 KOG0827 Predicted E3 ubiquitin 91.2 0.019 4.2E-07 58.3 -3.5 52 145-197 196-248 (465)
80 KOG4739 Uncharacterized protei 91.0 0.074 1.6E-06 51.0 0.3 47 147-197 5-51 (233)
81 COG5236 Uncharacterized conser 90.7 0.21 4.5E-06 50.4 3.1 52 139-194 55-108 (493)
82 KOG4185 Predicted E3 ubiquitin 90.6 0.16 3.5E-06 49.8 2.4 47 146-193 4-54 (296)
83 PF14447 Prok-RING_4: Prokaryo 90.6 0.15 3.3E-06 38.2 1.6 45 146-196 8-52 (55)
84 PF10272 Tmpp129: Putative tra 90.5 0.19 4.1E-06 51.2 2.8 56 142-197 268-354 (358)
85 KOG4275 Predicted E3 ubiquitin 90.3 0.06 1.3E-06 53.0 -1.0 42 145-194 300-342 (350)
86 KOG1940 Zn-finger protein [Gen 90.1 0.16 3.4E-06 50.0 1.7 46 145-191 158-204 (276)
87 PF04641 Rtf2: Rtf2 RING-finge 90.0 0.27 5.9E-06 47.8 3.3 53 144-198 112-165 (260)
88 KOG3268 Predicted E3 ubiquitin 89.4 0.23 5E-06 45.8 2.1 31 166-196 189-230 (234)
89 PF14446 Prok-RING_1: Prokaryo 89.4 0.38 8.3E-06 36.0 2.9 35 144-178 4-38 (54)
90 KOG1001 Helicase-like transcri 87.8 0.2 4.3E-06 55.2 0.7 48 146-198 455-504 (674)
91 COG5175 MOT2 Transcriptional r 87.6 0.35 7.6E-06 48.7 2.3 53 144-197 13-67 (480)
92 KOG2114 Vacuolar assembly/sort 87.0 0.27 5.9E-06 54.6 1.2 41 145-191 840-880 (933)
93 KOG2932 E3 ubiquitin ligase in 86.6 0.27 5.7E-06 49.0 0.8 42 147-193 92-133 (389)
94 KOG2034 Vacuolar sorting prote 85.3 0.36 7.7E-06 53.9 1.0 35 144-180 816-850 (911)
95 KOG0309 Conserved WD40 repeat- 84.3 0.58 1.3E-05 51.5 2.0 25 163-188 1045-1069(1081)
96 PF07800 DUF1644: Protein of u 84.0 0.9 1.9E-05 41.2 2.8 57 144-201 1-98 (162)
97 KOG0298 DEAD box-containing he 83.0 0.41 8.8E-06 55.4 0.3 45 146-193 1154-1198(1394)
98 KOG0802 E3 ubiquitin ligase [P 80.8 1 2.3E-05 48.3 2.4 48 144-199 478-525 (543)
99 KOG3053 Uncharacterized conser 78.6 0.88 1.9E-05 44.3 0.9 51 143-194 18-82 (293)
100 PF03854 zf-P11: P-11 zinc fin 78.2 0.8 1.7E-05 33.4 0.3 29 167-195 18-47 (50)
101 COG5220 TFB3 Cdk activating ki 77.1 0.79 1.7E-05 44.2 0.1 50 144-193 9-63 (314)
102 KOG1609 Protein involved in mR 77.0 0.97 2.1E-05 44.2 0.7 51 145-196 78-136 (323)
103 PF02439 Adeno_E3_CR2: Adenovi 76.9 4.4 9.5E-05 28.2 3.6 24 58-81 5-28 (38)
104 PF01708 Gemini_mov: Geminivir 76.3 3.7 8E-05 33.8 3.7 32 50-81 29-60 (91)
105 KOG1100 Predicted E3 ubiquitin 75.8 1.3 2.9E-05 41.9 1.2 39 148-194 161-200 (207)
106 KOG3161 Predicted E3 ubiquitin 75.8 0.85 1.8E-05 49.4 -0.1 43 145-190 11-53 (861)
107 KOG3800 Predicted E3 ubiquitin 74.6 2.5 5.4E-05 41.9 2.7 49 147-196 2-53 (300)
108 PF07010 Endomucin: Endomucin; 73.7 7.2 0.00016 37.4 5.5 28 54-81 189-216 (259)
109 COG5183 SSM4 Protein involved 72.5 2.3 5.1E-05 47.3 2.2 54 144-199 11-71 (1175)
110 KOG1812 Predicted E3 ubiquitin 72.2 1.6 3.4E-05 45.1 0.8 38 144-182 145-183 (384)
111 KOG3899 Uncharacterized conser 71.9 2.1 4.6E-05 42.4 1.6 31 167-197 325-368 (381)
112 PF05290 Baculo_IE-1: Baculovi 71.4 2.9 6.3E-05 36.9 2.2 52 145-196 80-134 (140)
113 KOG0825 PHD Zn-finger protein 68.4 3 6.4E-05 46.4 1.9 54 144-197 95-157 (1134)
114 PF01102 Glycophorin_A: Glycop 67.5 6.2 0.00013 34.4 3.3 29 53-81 59-89 (122)
115 KOG0269 WD40 repeat-containing 66.4 5 0.00011 44.5 3.1 41 146-188 780-820 (839)
116 KOG4362 Transcriptional regula 65.5 1.7 3.6E-05 47.8 -0.6 46 145-194 21-69 (684)
117 KOG3637 Vitronectin receptor, 64.8 6 0.00013 45.9 3.6 36 54-89 974-1009(1030)
118 KOG3002 Zn finger protein [Gen 64.8 4.5 9.8E-05 40.4 2.3 43 144-194 47-91 (299)
119 PF15102 TMEM154: TMEM154 prot 64.5 3.6 7.9E-05 36.9 1.4 7 175-181 129-135 (146)
120 PF13908 Shisa: Wnt and FGF in 62.6 9.8 0.00021 34.7 3.9 14 20-33 27-40 (179)
121 KOG1829 Uncharacterized conser 61.3 2.7 5.8E-05 45.5 -0.0 41 145-189 511-556 (580)
122 TIGR01478 STEVOR variant surfa 60.5 9.9 0.00021 37.7 3.7 30 52-81 255-284 (295)
123 PTZ00370 STEVOR; Provisional 59.8 10 0.00022 37.7 3.6 30 52-81 251-280 (296)
124 TIGR00917 2A060601 Niemann-Pic 59.7 16 0.00035 43.2 5.9 13 169-181 397-409 (1204)
125 TIGR00622 ssl1 transcription f 59.2 9.2 0.0002 32.9 2.9 46 145-190 55-110 (112)
126 KOG2817 Predicted E3 ubiquitin 58.5 7.5 0.00016 40.1 2.6 44 145-189 334-380 (394)
127 PF13901 DUF4206: Domain of un 58.0 7.4 0.00016 36.5 2.3 40 145-190 152-196 (202)
128 smart00249 PHD PHD zinc finger 56.6 7 0.00015 26.4 1.5 31 147-178 1-31 (47)
129 PF15176 LRR19-TM: Leucine-ric 56.4 11 0.00025 31.7 2.9 27 61-87 19-45 (102)
130 PF07975 C1_4: TFIIH C1-like d 55.1 7.9 0.00017 28.7 1.6 42 148-190 2-50 (51)
131 PF10577 UPF0560: Uncharacteri 52.8 24 0.00051 39.7 5.4 11 290-300 636-646 (807)
132 KOG4718 Non-SMC (structural ma 52.2 7.4 0.00016 37.0 1.3 46 146-194 182-227 (235)
133 PF15050 SCIMP: SCIMP protein 49.4 19 0.00042 31.3 3.2 15 58-72 9-23 (133)
134 KOG2066 Vacuolar assembly/sort 49.2 6.6 0.00014 43.8 0.5 44 144-189 783-830 (846)
135 PF06024 DUF912: Nucleopolyhed 48.7 15 0.00033 30.7 2.5 22 58-79 61-82 (101)
136 KOG3653 Transforming growth fa 48.6 30 0.00066 36.9 5.2 15 171-185 290-304 (534)
137 PF02891 zf-MIZ: MIZ/SP-RING z 48.6 16 0.00035 26.6 2.3 43 146-192 3-50 (50)
138 KOG4367 Predicted Zn-finger pr 47.7 8.5 0.00018 40.3 1.0 32 144-179 3-34 (699)
139 KOG2807 RNA polymerase II tran 47.6 12 0.00026 37.8 2.0 70 121-191 304-375 (378)
140 PF10571 UPF0547: Uncharacteri 47.5 11 0.00025 23.9 1.2 23 147-171 2-24 (26)
141 PF12273 RCR: Chitin synthesis 47.1 23 0.0005 30.6 3.6 8 59-66 6-13 (130)
142 KOG1815 Predicted E3 ubiquitin 45.1 10 0.00022 39.8 1.1 36 144-182 69-104 (444)
143 KOG2068 MOT2 transcription fac 44.2 20 0.00043 36.3 2.9 49 146-195 250-299 (327)
144 PF15298 AJAP1_PANP_C: AJAP1/P 42.8 15 0.00033 34.6 1.7 31 61-91 104-134 (205)
145 PF00628 PHD: PHD-finger; Int 42.0 11 0.00025 26.7 0.7 43 147-190 1-49 (51)
146 PF15183 MRAP: Melanocortin-2 41.7 54 0.0012 26.8 4.5 30 52-81 33-62 (90)
147 PF05961 Chordopox_A13L: Chord 39.0 52 0.0011 25.8 3.9 22 60-81 4-25 (68)
148 KOG3113 Uncharacterized conser 36.7 28 0.00062 34.1 2.6 53 145-199 111-163 (293)
149 PHA03049 IMV membrane protein; 36.5 56 0.0012 25.5 3.7 22 60-81 4-25 (68)
150 KOG1812 Predicted E3 ubiquitin 35.8 16 0.00034 37.8 0.8 44 145-189 306-351 (384)
151 PF01299 Lamp: Lysosome-associ 35.7 34 0.00073 34.0 3.1 23 56-78 270-292 (306)
152 KOG3005 GIY-YIG type nuclease 35.6 21 0.00045 35.2 1.5 49 145-193 182-242 (276)
153 PF12877 DUF3827: Domain of un 35.5 34 0.00074 37.6 3.3 10 333-342 520-529 (684)
154 COG5109 Uncharacterized conser 33.9 1.3E+02 0.0027 30.7 6.6 44 145-189 336-382 (396)
155 PRK14710 hypothetical protein; 33.8 26 0.00056 27.8 1.5 28 53-80 6-33 (86)
156 PF06024 DUF912: Nucleopolyhed 32.9 22 0.00048 29.7 1.1 27 54-80 60-86 (101)
157 PF02439 Adeno_E3_CR2: Adenovi 32.1 97 0.0021 21.6 3.9 23 59-81 9-31 (38)
158 PF05393 Hum_adeno_E3A: Human 32.1 66 0.0014 26.6 3.6 12 70-81 45-56 (94)
159 PF02009 Rifin_STEVOR: Rifin/s 31.7 41 0.00088 33.7 2.9 11 65-75 265-275 (299)
160 PF06906 DUF1272: Protein of u 31.6 71 0.0015 24.2 3.5 46 146-196 6-54 (57)
161 KOG3579 Predicted E3 ubiquitin 31.5 26 0.00057 34.9 1.5 40 145-184 268-307 (352)
162 PF01363 FYVE: FYVE zinc finge 31.1 25 0.00055 26.6 1.1 37 143-179 7-43 (69)
163 PF13717 zinc_ribbon_4: zinc-r 30.9 27 0.00059 23.7 1.1 25 147-172 4-36 (36)
164 KOG0805 Carbon-nitrogen hydrol 30.8 18 0.0004 35.4 0.3 9 2-10 142-150 (337)
165 PF05568 ASFV_J13L: African sw 30.8 44 0.00096 30.1 2.7 6 84-89 51-56 (189)
166 PF13807 GNVR: G-rich domain o 29.4 1.1E+02 0.0023 24.1 4.5 23 56-78 57-79 (82)
167 PLN02189 cellulose synthase 29.3 71 0.0015 37.2 4.6 54 144-197 33-90 (1040)
168 PF05283 MGC-24: Multi-glycosy 28.9 57 0.0012 30.5 3.2 27 53-79 156-182 (186)
169 PTZ00358 hypothetical protein; 28.9 76 0.0017 32.4 4.3 22 13-34 125-146 (367)
170 PF07423 DUF1510: Protein of u 28.8 45 0.00097 31.9 2.6 24 55-78 12-35 (217)
171 PF05283 MGC-24: Multi-glycosy 28.7 90 0.002 29.2 4.5 26 50-75 158-183 (186)
172 PHA03283 envelope glycoprotein 28.5 85 0.0018 33.8 4.7 23 56-78 397-419 (542)
173 PF14569 zf-UDP: Zinc-binding 28.3 86 0.0019 25.3 3.6 52 144-196 8-64 (80)
174 PF06844 DUF1244: Protein of u 27.7 34 0.00074 26.7 1.2 12 170-181 11-22 (68)
175 PF08374 Protocadherin: Protoc 27.3 49 0.0011 31.6 2.5 13 56-68 38-50 (221)
176 cd00065 FYVE FYVE domain; Zinc 26.6 48 0.001 23.9 1.9 35 146-180 3-37 (57)
177 PLN02638 cellulose synthase A 26.4 1E+02 0.0022 36.2 5.2 53 145-197 17-73 (1079)
178 smart00132 LIM Zinc-binding do 26.3 39 0.00084 21.8 1.2 37 147-193 1-37 (39)
179 PTZ00087 thrombosponding-relat 26.1 76 0.0016 31.5 3.6 29 53-81 294-322 (340)
180 PF11174 DUF2970: Protein of u 26.0 1E+02 0.0023 23.1 3.6 25 54-78 27-51 (56)
181 PF03954 Lectin_N: Hepatic lec 25.6 39 0.00085 30.1 1.4 20 59-78 34-53 (138)
182 PHA02692 hypothetical protein; 25.2 1.6E+02 0.0035 23.2 4.6 9 55-63 43-51 (70)
183 KOG3039 Uncharacterized conser 25.1 51 0.0011 32.3 2.2 36 142-181 40-75 (303)
184 PF10883 DUF2681: Protein of u 25.0 1E+02 0.0023 25.3 3.7 22 60-81 5-26 (87)
185 PHA02844 putative transmembran 24.5 70 0.0015 25.5 2.5 8 74-81 63-70 (75)
186 PF00412 LIM: LIM domain; Int 23.9 47 0.001 23.8 1.4 40 148-197 1-40 (58)
187 PF15069 FAM163: FAM163 family 23.7 41 0.00089 30.1 1.2 20 59-78 6-25 (143)
188 smart00064 FYVE Protein presen 23.2 78 0.0017 23.8 2.6 36 145-180 10-45 (68)
189 PLN02400 cellulose synthase 22.8 1E+02 0.0022 36.1 4.4 53 145-197 36-92 (1085)
190 PF06365 CD34_antigen: CD34/Po 22.7 1E+02 0.0023 29.2 3.8 7 75-81 118-124 (202)
191 KOG1025 Epidermal growth facto 22.4 1.6E+02 0.0034 34.1 5.5 10 22-33 596-605 (1177)
192 PF15065 NCU-G1: Lysosomal tra 22.3 83 0.0018 32.3 3.2 27 52-78 312-338 (350)
193 PF04423 Rad50_zn_hook: Rad50 22.2 32 0.00069 25.1 0.2 12 185-196 22-33 (54)
194 PF10745 DUF2530: Protein of u 21.9 58 0.0013 26.2 1.6 6 44-49 4-9 (77)
195 PF07649 C1_3: C1-like domain; 21.9 61 0.0013 20.7 1.5 29 147-176 2-30 (30)
196 KOG1245 Chromatin remodeling c 21.6 37 0.00081 40.9 0.7 49 144-193 1107-1159(1404)
197 KOG0824 Predicted E3 ubiquitin 21.3 54 0.0012 32.9 1.6 50 144-196 104-153 (324)
198 PRK09174 F0F1 ATP synthase sub 21.2 1.1E+02 0.0025 28.7 3.8 12 48-59 45-56 (204)
199 PF14654 Epiglycanin_C: Mucin, 21.0 1.6E+02 0.0035 24.8 4.0 26 56-81 19-44 (106)
200 PF13719 zinc_ribbon_5: zinc-r 20.9 49 0.0011 22.4 0.9 25 147-172 4-36 (37)
201 PF10577 UPF0560: Uncharacteri 20.9 1.2E+02 0.0027 34.3 4.4 9 61-69 274-282 (807)
202 PF05510 Sarcoglycan_2: Sarcog 20.8 1E+02 0.0023 32.0 3.6 24 58-81 285-308 (386)
203 PF10497 zf-4CXXC_R1: Zinc-fin 20.6 1.2E+02 0.0026 25.6 3.4 46 145-191 7-69 (105)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.1e-18 Score=168.36 Aligned_cols=78 Identities=29% Similarity=0.846 Sum_probs=68.3
Q ss_pred cCCCHHHHhhcceeEecCCCCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCC-CCcccccccCCCCC
Q 016298 121 VGLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHIN-CPMCRAHIVHETVT 199 (392)
Q Consensus 121 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~t-CPlCR~~v~~~~~~ 199 (392)
..+.+..+.++|+..|+........+.|+||||+|..|+++|+|| |+|.||..||++||.++.+ ||+|++.+......
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 456788999999999999776655579999999999999999999 9999999999999988855 99999988765443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.44 E-value=2.6e-14 Score=101.71 Aligned_cols=44 Identities=52% Similarity=1.254 Sum_probs=40.6
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 190 (392)
++|+||+++|..++.+..++ |+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.22 E-value=8.1e-12 Score=119.22 Aligned_cols=75 Identities=25% Similarity=0.621 Sum_probs=58.4
Q ss_pred ccCCCHHHHhhcceeEecCC--CCcccCCcccccccccccCCc----eeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 120 TVGLQQSVINSITVCRYKKG--EGLIEGTECSVCLNEFQEDET----VRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 120 ~~gl~~~~i~~lp~~~~~~~--~~~~~~~~C~ICle~~~~~~~----vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
..+..+.+++.+|.+..+.. .....+.+|+||++.+.+++. +.+++.|+|.||..||.+|++.+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 35678999999998865432 233356899999999876431 234444999999999999999999999999987
Q ss_pred c
Q 016298 194 V 194 (392)
Q Consensus 194 ~ 194 (392)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.17 E-value=1.1e-11 Score=97.93 Aligned_cols=45 Identities=33% Similarity=1.001 Sum_probs=36.2
Q ss_pred CCcccccccccccC----------CceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298 145 GTECSVCLNEFQED----------ETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190 (392)
Q Consensus 145 ~~~C~ICle~~~~~----------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 190 (392)
++.|+||++.|.+. -.+...+ |+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 55699999999432 2445555 999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.3e-11 Score=119.30 Aligned_cols=72 Identities=25% Similarity=0.716 Sum_probs=53.0
Q ss_pred CCHHHHhhcceeEecCCCCcccCCcccccccc-cccC---------CceeecCCCCCcCChhHHHHHHhcCCCCCccccc
Q 016298 123 LQQSVINSITVCRYKKGEGLIEGTECSVCLNE-FQED---------ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAH 192 (392)
Q Consensus 123 l~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~-~~~~---------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 192 (392)
..+++-+.+|+...... ...+..|.||+++ |+.+ .+.+.|| |||+||.+|++.|++++++||+||.+
T Consensus 267 ~~kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 267 ATKDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred HhhHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence 34444445554433332 2347899999999 4443 2567899 99999999999999999999999999
Q ss_pred ccCCC
Q 016298 193 IVHET 197 (392)
Q Consensus 193 v~~~~ 197 (392)
+..+.
T Consensus 344 ~ifd~ 348 (491)
T COG5243 344 VIFDQ 348 (491)
T ss_pred ccccc
Confidence 65543
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.4e-11 Score=116.58 Aligned_cols=51 Identities=41% Similarity=1.168 Sum_probs=46.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~ 195 (392)
.+.+|+|||+.|..++.+++|| |.|.||..|+++|+. -+..||+||+++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3579999999999999999999 999999999999998 55679999999865
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=2.3e-09 Score=74.31 Aligned_cols=44 Identities=59% Similarity=1.287 Sum_probs=37.1
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHI 193 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v 193 (392)
+|+||++.+ .+.+.+.+ |+|.||..|++.|++. ...||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34466666 9999999999999987 77799998764
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.82 E-value=1.8e-09 Score=78.74 Aligned_cols=46 Identities=37% Similarity=0.909 Sum_probs=39.6
Q ss_pred CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
+..|.||++...+ +..+| |||. |+..|+..|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999998654 78888 9999 999999999999999999999874
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.80 E-value=2.7e-09 Score=86.23 Aligned_cols=52 Identities=35% Similarity=0.815 Sum_probs=40.2
Q ss_pred cCCccccccccccc--------C-CceeecCCCCCcCChhHHHHHHhc---CCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQE--------D-ETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~--------~-~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~~ 195 (392)
+++.|.||+..|.. + +...++..|+|.||..||.+||.+ +..||+||+.+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 37899999999973 1 222334459999999999999985 4679999998754
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.72 E-value=1.2e-08 Score=94.33 Aligned_cols=52 Identities=25% Similarity=0.787 Sum_probs=41.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----------------CCCCCcccccccCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----------------HINCPMCRAHIVHETVT 199 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~v~~~~~~ 199 (392)
++.+|+||++.+.+ ..+++ |||.||..||..|+.. ...||+||..+......
T Consensus 17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 35789999999865 45577 9999999999999852 24699999999765443
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.72 E-value=5.8e-09 Score=72.30 Aligned_cols=39 Identities=38% Similarity=1.137 Sum_probs=33.2
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC 189 (392)
|+||++.+.+ .+..++ |||.||.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 456787 99999999999999998899998
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.2e-09 Score=110.71 Aligned_cols=52 Identities=33% Similarity=0.882 Sum_probs=45.7
Q ss_pred cCCcccccccccccCCc--eeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDET--VRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
.+..|+||+|++..+.. .+.|| |+|+||..|+..|+++.++||.||..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 47899999999988654 77888 999999999999999999999999955443
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.2e-09 Score=99.87 Aligned_cols=49 Identities=35% Similarity=0.826 Sum_probs=43.0
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
...|.+||+...+ ...+| |||+||..||..|...+..||+||..+.+..
T Consensus 239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 4689999999765 56688 9999999999999999999999999886654
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.66 E-value=8e-09 Score=96.83 Aligned_cols=55 Identities=33% Similarity=0.817 Sum_probs=41.1
Q ss_pred CcccCCcccccccccccCC-----ceeecCCCCCcCChhHHHHHHhcC------CCCCcccccccC
Q 016298 141 GLIEGTECSVCLNEFQEDE-----TVRLLPKCNHAFHISCIDTWLSSH------INCPMCRAHIVH 195 (392)
Q Consensus 141 ~~~~~~~C~ICle~~~~~~-----~vr~lp~C~H~FH~~CI~~Wl~~~------~tCPlCR~~v~~ 195 (392)
....+.+|+||||..-... .-.+|+.|+|.||..||..|...+ .+||+||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3345789999999864321 223565699999999999999753 359999998753
No 15
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.59 E-value=1.9e-08 Score=79.76 Aligned_cols=52 Identities=37% Similarity=0.678 Sum_probs=39.8
Q ss_pred CCccccccccccc------------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQE------------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~------------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
-+.|+||...|.+ ++.....-.|+|.||..||.+||..+..||++|+.+...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3678888777643 223333445999999999999999999999999987543
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.52 E-value=6.3e-08 Score=68.93 Aligned_cols=44 Identities=30% Similarity=0.933 Sum_probs=38.5
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 191 (392)
.|.||++.|......++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666788888 9999999999999866778999985
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.8e-08 Score=92.06 Aligned_cols=53 Identities=28% Similarity=0.739 Sum_probs=42.6
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcccccccCCCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMCRAHIVHETVTAP 201 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~v~~~~~~~~ 201 (392)
.-+|.|||+.-++ .+++. |||.||..||-+||+.+. .||+|+..|..+...+.
T Consensus 47 ~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 47 FFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred ceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 5689999998654 34455 999999999999998543 49999999988776554
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=8.4e-08 Score=64.08 Aligned_cols=38 Identities=45% Similarity=1.207 Sum_probs=32.6
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlC 189 (392)
|+||++.. .....++ |+|.||..|++.|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 3577788 999999999999998 66679987
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.48 E-value=5.1e-08 Score=67.87 Aligned_cols=39 Identities=44% Similarity=1.289 Sum_probs=33.2
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHh--cCCCCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS--SHINCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCPlC 189 (392)
|+||++.+... +++++ |+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998764 35787 999999999999998 45569998
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.2e-08 Score=87.97 Aligned_cols=51 Identities=33% Similarity=0.784 Sum_probs=42.1
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
-..|+|||+.+..... +..+|||+||..||+.-++....||+||..|..+.
T Consensus 131 ~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3689999999976432 33359999999999999999999999998776553
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.44 E-value=1.8e-07 Score=70.70 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=41.2
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
..|+||++.+.+. .+++ |||+|+..||..|++.+.+||+|+..+....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 4699999999763 5677 9999999999999999999999998875443
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.43 E-value=1.1e-07 Score=67.19 Aligned_cols=38 Identities=37% Similarity=1.020 Sum_probs=29.1
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlC 189 (392)
|+||++.|.+ .+.|+ |||.|+..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999976 66787 99999999999999753 359988
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=4.3e-07 Score=92.79 Aligned_cols=51 Identities=33% Similarity=0.683 Sum_probs=43.4
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+.....|+||++.|.. ..+++ |+|.||..||..|+.....||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3456799999999965 34677 999999999999999888899999988654
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-07 Score=77.30 Aligned_cols=52 Identities=33% Similarity=0.740 Sum_probs=40.5
Q ss_pred cCCccccccccccc-------------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQE-------------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~-------------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
.-+.|+||...+.+ ++.......|+|.||..||.+||+++..||||.+....
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 45889999877632 23344444699999999999999999999999776543
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-07 Score=74.07 Aligned_cols=50 Identities=36% Similarity=0.821 Sum_probs=38.0
Q ss_pred CCccccccccccc---------CCceeecCCCCCcCChhHHHHHHhc---CCCCCccccccc
Q 016298 145 GTECSVCLNEFQE---------DETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~---------~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~ 194 (392)
++.|.||.-.|.. ++-..++-.|.|.||..||.+|+.. +..||+||..+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4589999999864 2233344459999999999999974 445999998764
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.8e-06 Score=87.39 Aligned_cols=51 Identities=27% Similarity=0.841 Sum_probs=40.1
Q ss_pred cCCcccccccccccCC--------------ceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDE--------------TVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~--------------~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~ 195 (392)
...+|+||+.++..-. .-.++| |.|+||..|+..|+. .+-.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999875311 233568 999999999999999 45589999998864
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.07 E-value=2.4e-06 Score=62.43 Aligned_cols=42 Identities=21% Similarity=0.808 Sum_probs=33.1
Q ss_pred cccccccccccCCceeecCCCC-----CcCChhHHHHHHhcC--CCCCccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSSH--INCPMCR 190 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR 190 (392)
.|.||++ ...++...++| |. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 44445566788 85 899999999999654 4799995
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.05 E-value=7.5e-07 Score=97.03 Aligned_cols=73 Identities=23% Similarity=0.618 Sum_probs=51.3
Q ss_pred CCCHHHHhhcceeEecCCCCcccCCcccccccccccCC---ceeecCCCCCcCChhHHHHHHhc--CCCCCccccccc
Q 016298 122 GLQQSVINSITVCRYKKGEGLIEGTECSVCLNEFQEDE---TVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIV 194 (392)
Q Consensus 122 gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~---~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~ 194 (392)
+..-++.+.+-.++..-......-.+||||+..+..-+ .-...+.|.|.||..|+-+|+++ +.+||+||..+.
T Consensus 1446 ~~ngs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hccchHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 44445556666665555555666789999999876322 11122359999999999999985 557999998764
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.01 E-value=3e-06 Score=60.34 Aligned_cols=34 Identities=29% Similarity=0.816 Sum_probs=21.8
Q ss_pred ccccccccccCC-ceeecCCCCCcCChhHHHHHHhcC
Q 016298 148 CSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSH 183 (392)
Q Consensus 148 C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~ 183 (392)
|+||++ |...+ ..++|+ |||.|+.+||++|+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 568899 99999999999999854
No 30
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.4e-06 Score=81.03 Aligned_cols=51 Identities=33% Similarity=0.826 Sum_probs=42.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHH-HHhcCCC-CCcccccccCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT-WLSSHIN-CPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~v~~~~~ 198 (392)
.+..|+||++.... ...+| |||+||..||.. |-..+.- ||+||+.+.++..
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 35689999998765 56677 999999999999 9877766 9999998876643
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.5e-06 Score=82.09 Aligned_cols=53 Identities=28% Similarity=0.732 Sum_probs=43.5
Q ss_pred ccCCcccccccccccCC-------ceeecCCCCCcCChhHHHHHH--hcCCCCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDE-------TVRLLPKCNHAFHISCIDTWL--SSHINCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~-------~vr~lp~C~H~FH~~CI~~Wl--~~~~tCPlCR~~v~~~ 196 (392)
.++..|+||-..+.... ..-.|. |+|+||..||+-|- ..+++||.|+..+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 35789999999886654 566777 99999999999995 5788999998877544
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.85 E-value=4.5e-06 Score=65.47 Aligned_cols=50 Identities=30% Similarity=0.782 Sum_probs=23.5
Q ss_pred CCcccccccccc-cCCc-eeec--CCCCCcCChhHHHHHHhc----C-------CCCCccccccc
Q 016298 145 GTECSVCLNEFQ-EDET-VRLL--PKCNHAFHISCIDTWLSS----H-------INCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~-~~~~-vr~l--p~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~v~ 194 (392)
+.+|.||++.+. .++. ..+- +.|++.||..||.+||.. + .+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999876 3322 2222 269999999999999963 1 14999998874
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=9.9e-06 Score=84.04 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=40.1
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-----CCCCCcccccccCCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCRAHIVHETVTA 200 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~~~~~ 200 (392)
+..|+|||+.... ...+- |||+||..||-.++.. ...||+||..|...+..+
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 6789999998654 23343 9999999999997753 345999999998765443
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.78 E-value=7.5e-06 Score=81.01 Aligned_cols=50 Identities=28% Similarity=0.725 Sum_probs=44.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
.-..|.||.+-|.. ..++| |+|.||.-||..+|..+..||.|+.++.+..
T Consensus 22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 34689999999976 56788 9999999999999999999999999886654
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.1e-05 Score=75.88 Aligned_cols=44 Identities=39% Similarity=0.966 Sum_probs=38.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 191 (392)
+...|+||++.|... +++| |+|.||..||..|+.....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 567999999999886 7888 9999999999999885556999993
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.73 E-value=1.4e-05 Score=81.65 Aligned_cols=52 Identities=37% Similarity=0.863 Sum_probs=41.2
Q ss_pred CCcccCCcccccccccccCC-ceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 140 EGLIEGTECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 140 ~~~~~~~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
.+..+-.+|+||||.+.... .++... |.|.||..|+..|. ..+||+||....
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 34456789999999997654 345555 99999999999995 678999998665
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.72 E-value=1.3e-05 Score=63.06 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHETV 198 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~ 198 (392)
...|+|+.+-|.+ ..++| +||.|...||..|++. +.+||+|+.++.....
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 4689999999976 56778 9999999999999998 8889999998876543
No 38
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=2.4e-05 Score=77.41 Aligned_cols=52 Identities=19% Similarity=0.492 Sum_probs=38.3
Q ss_pred CCcccccccccc-cCC-ceeecCCCCCcCChhHHHHHH-hcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQ-EDE-TVRLLPKCNHAFHISCIDTWL-SSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~-~~~-~vr~lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~v~~~~ 197 (392)
+..|+||..+-. ..+ .+.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 468999999632 222 333445 99999999999965 44567999999887654
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.64 E-value=1.9e-05 Score=76.74 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=41.8
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
+..-..|-||-+-|.. ...++ |||.||.-||...|..+..||+||.+..+
T Consensus 22 LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3345789999998865 34556 99999999999999999999999987654
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=2.9e-05 Score=78.10 Aligned_cols=51 Identities=25% Similarity=0.878 Sum_probs=36.9
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhc---CCCCCcccccccCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRAHIVHE 196 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~v~~~ 196 (392)
..|.||.+-+.....+.....|||+||..|+..|+.. +.+||+||-.+...
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 5799995555444445444459999999999999984 35799999544433
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=9.1e-05 Score=74.08 Aligned_cols=49 Identities=35% Similarity=0.801 Sum_probs=41.8
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
.+.+|.|||.+-.+ +.+|| |.|. .|..|.+..--+++.||+||+++...
T Consensus 289 ~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred CCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 36799999998655 78899 9995 89999999777888999999998653
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.32 E-value=4.7e-05 Score=82.09 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=42.0
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
...|++|+..+.++......+ |+|+||..||+.|-+.-.+||+||..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 357889998887766555555 99999999999999999999999987753
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00011 Score=73.97 Aligned_cols=52 Identities=33% Similarity=0.924 Sum_probs=40.5
Q ss_pred cCCcccccccccccCC----ceeecCCCCCcCChhHHHHHHh--c-----CCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDE----TVRLLPKCNHAFHISCIDTWLS--S-----HINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~----~vr~lp~C~H~FH~~CI~~Wl~--~-----~~tCPlCR~~v~~ 195 (392)
.+.+|.||++...+.. ...+||.|.|.||..||+.|-. + ...||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 4679999999976543 1345677999999999999983 3 4569999987644
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.15 E-value=0.00012 Score=56.33 Aligned_cols=49 Identities=33% Similarity=0.747 Sum_probs=24.6
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
-..|++|.+.+... + .+..|.|+|+..||..-+.. -||+|+.+.-..+.
T Consensus 7 lLrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 7 LLRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI 55 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred hcCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence 46899999998653 3 33459999999999886553 39999888755543
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00029 Score=71.46 Aligned_cols=48 Identities=31% Similarity=0.954 Sum_probs=36.4
Q ss_pred CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhc--CCCCCccccc
Q 016298 145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAH 192 (392)
Q Consensus 145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~ 192 (392)
+.+|+||++.+... +.-.+.+.|+|.|-.+||++||.. ...||+|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 57899999998753 333344459999999999999952 2349999654
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.09 E-value=0.00019 Score=70.29 Aligned_cols=56 Identities=27% Similarity=0.726 Sum_probs=45.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-----------------------cCCCCCcccccccCCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-----------------------SHINCPMCRAHIVHETVTA 200 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------------------~~~tCPlCR~~v~~~~~~~ 200 (392)
....|.|||--|.+++...+++ |.|.||..|+.++|. ....||+||..|..+....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~sl 192 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSL 192 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence 4578999999999999888898 999999999987763 1224999999998765443
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=8.9e-05 Score=73.99 Aligned_cols=50 Identities=28% Similarity=0.645 Sum_probs=40.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~ 196 (392)
.+..|+|||+-+.. .+..+.|.|.||.+||..-++ .+++||.||+.+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 46799999999865 445557999999999999886 567899999987543
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00044 Score=67.83 Aligned_cols=53 Identities=28% Similarity=0.467 Sum_probs=41.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETVTAP 201 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~~~~ 201 (392)
..+|+||+....- ...|+ |+|.||..||+--.. ...+|++||.+|.......+
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 5689999988654 35677 999999999998665 45679999999987654443
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00032 Score=52.21 Aligned_cols=46 Identities=33% Similarity=0.685 Sum_probs=34.4
Q ss_pred CCcccccccccccCCceeecCCCCCc-CChhHHHH-HHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDT-WLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~-Wl~~~~tCPlCR~~v~ 194 (392)
+++|.||+|.-.+ .+ +.. |||. .|.+|-.+ |-..+..||+||+++.
T Consensus 7 ~dECTICye~pvd--sV-lYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD--SV-LYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch--HH-HHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4899999988543 23 333 9996 78888655 5458889999999874
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.65 E-value=0.0011 Score=67.24 Aligned_cols=46 Identities=35% Similarity=0.929 Sum_probs=38.8
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc--CCCCCcccccccCC
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIVHE 196 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~ 196 (392)
-|-||-|. +..+++-| |||..|..|+..|-.. .++||.||..|...
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999876 34588899 9999999999999854 57899999998654
No 51
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00091 Score=72.60 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=39.2
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETV 198 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~ 198 (392)
-..|++|-..+.+ +.+. +|+|+||..||.+-+. ++..||.|-+.|...+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 4689999977654 3334 4999999999999987 56679999988876543
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0016 Score=67.04 Aligned_cols=50 Identities=32% Similarity=0.822 Sum_probs=42.6
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
...+-+|.||+..+.. ...+| |||.||..||++-+....-||+||..+..
T Consensus 81 ~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 3457799999988865 55668 99999999999988877789999999876
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.26 E-value=0.0023 Score=65.88 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=42.3
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
.++..|++|...+.+.-. ... |||.||..|+..|+..+..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchh
Confidence 456899999999987532 234 999999999999999999999998877544
No 54
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.22 E-value=0.0013 Score=57.66 Aligned_cols=38 Identities=18% Similarity=0.583 Sum_probs=31.6
Q ss_pred CCcccccccccccCCceeecCCCC------CcCChhHHHHHHhcC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCN------HAFHISCIDTWLSSH 183 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~------H~FH~~CI~~Wl~~~ 183 (392)
..+|+||++.+...+.++.++ |+ |.||.+|+++|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 468999999998866777787 76 999999999995433
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.10 E-value=0.0018 Score=65.66 Aligned_cols=46 Identities=33% Similarity=0.824 Sum_probs=38.7
Q ss_pred CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCC--CCCcccc
Q 016298 145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHI--NCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 191 (392)
+..|..|-+.+-.. +.+..|| |.|+||..|+.+.|.++. +||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46799999988653 4678899 999999999999998665 5999994
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.005 Score=58.32 Aligned_cols=51 Identities=27% Similarity=0.737 Sum_probs=43.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~v~~~~ 197 (392)
...|..|--.+..+|.+|+. |-|.||.+|+++|-.. ...||.|-.+|+++.
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 56899999999999999875 9999999999999753 224999999998764
No 57
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.002 Score=58.15 Aligned_cols=29 Identities=31% Similarity=0.840 Sum_probs=26.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCCh
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHI 173 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~ 173 (392)
...+|.||||++..++.+..|| |-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4568999999999999999999 9999996
No 58
>PHA02862 5L protein; Provisional
Probab=95.71 E-value=0.0055 Score=54.38 Aligned_cols=51 Identities=20% Similarity=0.566 Sum_probs=37.9
Q ss_pred CCcccccccccccCCceeecCCCC-----CcCChhHHHHHHhc--CCCCCcccccccCCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSS--HINCPMCRAHIVHETVTA 200 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~~ 200 (392)
++.|-||+++-.+ . .-| |. ..-|.+|+.+|+.. +..|++|+.++..+....
T Consensus 2 ~diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK 59 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV 59 (156)
T ss_pred CCEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc
Confidence 4689999998533 2 356 65 57999999999974 446999999987655443
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.63 E-value=0.0075 Score=45.48 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=27.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPM 188 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPl 188 (392)
-...|+|.+..|+++ ++-.. |+|.|-.+.|..||+.+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 357899999999763 55555 99999999999999543 34998
No 60
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.46 E-value=0.0081 Score=43.48 Aligned_cols=40 Identities=35% Similarity=0.987 Sum_probs=27.2
Q ss_pred ccccccccccCCceeecCCCC-----CcCChhHHHHHHhc--CCCCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSS--HINCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlC 189 (392)
|-||++.-...+ ..+.| |. -..|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999876655 44567 75 36899999999974 4569887
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.43 E-value=0.0086 Score=68.69 Aligned_cols=69 Identities=25% Similarity=0.546 Sum_probs=47.5
Q ss_pred HHhhcceeEecCC-CCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC----------CCCCcccccccC
Q 016298 127 VINSITVCRYKKG-EGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----------INCPMCRAHIVH 195 (392)
Q Consensus 127 ~i~~lp~~~~~~~-~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----------~tCPlCR~~v~~ 195 (392)
.-.-||-..-++. .....++.|.||+-+--.......|. |+|+||..|...-|++. -.||+|..+|.+
T Consensus 3467 EE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3467 EEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3445666554432 23345789999998755555566676 99999999998766532 249999998865
Q ss_pred C
Q 016298 196 E 196 (392)
Q Consensus 196 ~ 196 (392)
-
T Consensus 3546 ~ 3546 (3738)
T KOG1428|consen 3546 I 3546 (3738)
T ss_pred H
Confidence 3
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.97 E-value=0.0091 Score=49.30 Aligned_cols=32 Identities=41% Similarity=0.889 Sum_probs=27.3
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCID 177 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~ 177 (392)
++..|++|-..+.. ....+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 46789999999977 5667788 99999999975
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.96 E-value=0.0061 Score=60.66 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=42.2
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
...+|.+|-.-|.+...+. .|-|.||..||.+.|....+||.|...+...
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4679999999988765443 4999999999999999999999998877544
No 64
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.72 E-value=0.025 Score=51.09 Aligned_cols=49 Identities=20% Similarity=0.623 Sum_probs=36.5
Q ss_pred cCCcccccccccccCCceeecCCCCC-----cCChhHHHHHHhcC--CCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNH-----AFHISCIDTWLSSH--INCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H-----~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~ 197 (392)
.+..|-||.++-.. . ..| |.. ..|.+|+.+|+... ..|++|+.++....
T Consensus 7 ~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 7 MDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 46799999988432 2 246 654 56999999999754 45999999886653
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.39 E-value=0.017 Score=60.70 Aligned_cols=51 Identities=22% Similarity=0.628 Sum_probs=39.1
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-----cCCCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~v~~~ 196 (392)
..+..+|.+|-+.-++ ..... |.|.||..||..+.. .+.+||.|...+..+
T Consensus 533 nk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456799999988654 44454 999999999999875 356799998777554
No 66
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.042 Score=53.64 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=36.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--CCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--HINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~v~ 194 (392)
.+.+|++|-+.=..+ -...+ |+|+||.-||..=+.. .-+||.|-.++.
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 568999999875443 34455 9999999999987654 468999977665
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.22 E-value=0.036 Score=40.44 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=21.7
Q ss_pred ccccccccccCC-ceeecCCCCCcCChhHHHHHHh-cCCCCCcccccc
Q 016298 148 CSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHI 193 (392)
Q Consensus 148 C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v 193 (392)
|++|.+++...+ ...--+ |++..+..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 333333 788888899887775 467799999875
No 68
>PHA03096 p28-like protein; Provisional
Probab=94.13 E-value=0.023 Score=56.19 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=33.2
Q ss_pred CcccccccccccCC----ceeecCCCCCcCChhHHHHHHhc---CCCCCcccc
Q 016298 146 TECSVCLNEFQEDE----TVRLLPKCNHAFHISCIDTWLSS---HINCPMCRA 191 (392)
Q Consensus 146 ~~C~ICle~~~~~~----~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 191 (392)
-.|.||++...... .-.+|+.|.|.||..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999976532 33467789999999999999853 233544443
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.04 Score=53.02 Aligned_cols=54 Identities=11% Similarity=0.306 Sum_probs=47.2
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT 199 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 199 (392)
-.|+||.+.+.+.....+|..|||+|+.+|+++.+.....||+|-.++...+..
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 469999999998877777767999999999999999999999999888776543
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.05 E-value=0.023 Score=62.56 Aligned_cols=49 Identities=31% Similarity=0.788 Sum_probs=36.5
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-------CCCCCcccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-------HINCPMCRAHI 193 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~v 193 (392)
..+|.||++.+.....+---..|-|+||..||.+|.++ .-.||-|+...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 45899999999776544333348899999999999863 12499998443
No 71
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.02 E-value=0.023 Score=53.05 Aligned_cols=45 Identities=18% Similarity=0.480 Sum_probs=37.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
.-.|.||-.+|.. .++.. |||.||..|..+-++....|-+|....
T Consensus 196 PF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 3479999999976 34454 999999999999999999999997654
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.024 Score=58.00 Aligned_cols=46 Identities=26% Similarity=0.761 Sum_probs=37.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~ 191 (392)
--.|.||+++.........+| |+|+||..|+..++.. .-.||-+.-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 358999999987778899999 9999999999999853 224877754
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.055 Score=54.60 Aligned_cols=44 Identities=32% Similarity=0.714 Sum_probs=32.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
..+.|.||+++..+ ...+| |||.-| |..-- +....||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 35789999999766 67788 999966 65543 34445999998764
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.042 Score=54.13 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=38.3
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
...|-||...|..+ ++.. |+|.||..|...-++....|++|-+.+.
T Consensus 241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceecccccc
Confidence 35699999999873 3444 9999999999998999899999977654
No 75
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.39 E-value=0.1 Score=51.57 Aligned_cols=52 Identities=31% Similarity=0.730 Sum_probs=38.3
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcc-cccccCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMC-RAHIVHETVT 199 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlC-R~~v~~~~~~ 199 (392)
...|+.|-.-+... ++ +|.|+|.||.+||..-|. ....||.| |+.+..+...
T Consensus 274 ~LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~ 327 (427)
T COG5222 274 SLKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT 327 (427)
T ss_pred cccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCcccccchhhccC
Confidence 37899998776553 33 366999999999998765 66779999 5566555443
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.23 Score=49.74 Aligned_cols=47 Identities=21% Similarity=0.482 Sum_probs=37.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
....|+||+....++..+.+ -|-+||..||-..+..++.||+=..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 35789999999876533322 699999999999999999999865443
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.16 Score=51.23 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=41.6
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
.++..|+||...- ......| |+|.=|..||.+-|...+.|=.|++.+..
T Consensus 420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4688999998653 3456788 99999999999999999999999888764
No 78
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.26 E-value=0.1 Score=37.10 Aligned_cols=41 Identities=22% Similarity=0.668 Sum_probs=22.9
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHhcCC--CCCcc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI--NCPMC 189 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlC 189 (392)
|.+|.+....|..-.-. .|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777776665433222 3888999999999998665 69987
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.019 Score=58.27 Aligned_cols=52 Identities=19% Similarity=0.616 Sum_probs=44.0
Q ss_pred CCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
...|+||.+.|... +.+..+- |||++|.+||.+||....-||.||+.+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 45799999998765 5566665 9999999999999999888999999886544
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.00 E-value=0.074 Score=51.02 Aligned_cols=47 Identities=23% Similarity=0.578 Sum_probs=33.3
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
.|-.|.-- ..++...++. |+|+||..|...-. ...||+|+..+....
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQ 51 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccCC--ccccccccceeeeee
Confidence 46656543 3366777776 99999999977632 228999999875543
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.66 E-value=0.21 Score=50.36 Aligned_cols=52 Identities=23% Similarity=0.520 Sum_probs=40.2
Q ss_pred CCCcccCCcccccccccccCCceeecCCCCCcCChhHHHH--HHhcCCCCCccccccc
Q 016298 139 GEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT--WLSSHINCPMCRAHIV 194 (392)
Q Consensus 139 ~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~--Wl~~~~tCPlCR~~v~ 194 (392)
++...+...|.||-+.+.- +.++| |+|..|-.|--+ -|.....||+||+...
T Consensus 55 ddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3444456789999988653 67889 999999999765 3567888999998653
No 82
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=0.16 Score=49.83 Aligned_cols=47 Identities=30% Similarity=0.843 Sum_probs=38.6
Q ss_pred CcccccccccccCC---ceeecCCCCCcCChhHHHHHHhcC-CCCCcccccc
Q 016298 146 TECSVCLNEFQEDE---TVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHI 193 (392)
Q Consensus 146 ~~C~ICle~~~~~~---~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v 193 (392)
..|-||-++|...+ ..+.|. |||.|+..|+.+-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998764 456776 99999999999877643 4599999985
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.60 E-value=0.15 Score=38.19 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=32.1
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
..|-.|... +..-.++| |+|+.+..|.+- .+-+.||.|.+++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccCC
Confidence 345555433 33456788 999999999776 4667799999888654
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.49 E-value=0.19 Score=51.22 Aligned_cols=56 Identities=23% Similarity=0.558 Sum_probs=34.7
Q ss_pred cccCCcccccccccccCC-------------ceeecCC-----CCCcCChhHHHHHHhc-------------CCCCCccc
Q 016298 142 LIEGTECSVCLNEFQEDE-------------TVRLLPK-----CNHAFHISCIDTWLSS-------------HINCPMCR 190 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~-------------~vr~lp~-----C~H~FH~~CI~~Wl~~-------------~~tCPlCR 190 (392)
..+.+.|--|+..-.+-. .....+. |.-.+|.+|+-+|+.+ +.+||.||
T Consensus 268 ~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred ccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 346788999998643210 0111111 3345688999999853 23599999
Q ss_pred ccccCCC
Q 016298 191 AHIVHET 197 (392)
Q Consensus 191 ~~v~~~~ 197 (392)
+.+...+
T Consensus 348 a~FCilD 354 (358)
T PF10272_consen 348 AKFCILD 354 (358)
T ss_pred ccceeee
Confidence 9876543
No 85
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.06 Score=53.01 Aligned_cols=42 Identities=29% Similarity=0.732 Sum_probs=31.0
Q ss_pred CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
..-|+||++.-.+ ...|+ |||. -|..|-.. -+.||+||+.|.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 4579999987543 67888 9995 56677544 237999998764
No 86
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.07 E-value=0.16 Score=49.99 Aligned_cols=46 Identities=22% Similarity=0.634 Sum_probs=38.3
Q ss_pred CCcccccccccccCC-ceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298 145 GTECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 191 (392)
...|+||.+.+.... .+..++ |+|.-|..|+......+-+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999976654 466777 9999999999998877789999987
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.96 E-value=0.27 Score=47.83 Aligned_cols=53 Identities=23% Similarity=0.492 Sum_probs=41.0
Q ss_pred cCCcccccccccccCCce-eecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 144 EGTECSVCLNEFQEDETV-RLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~v-r~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
..-.|+|...+|...... .+.| |||+|...+|+.- .....||+|-.++...+.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~-cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRP-CGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcC-CCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence 456899999999655444 4446 9999999999996 235679999998876543
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.41 E-value=0.23 Score=45.78 Aligned_cols=31 Identities=32% Similarity=0.889 Sum_probs=24.6
Q ss_pred CCCCcCChhHHHHHHhcC-----------CCCCcccccccCC
Q 016298 166 KCNHAFHISCIDTWLSSH-----------INCPMCRAHIVHE 196 (392)
Q Consensus 166 ~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~v~~~ 196 (392)
.|+.-||.-|+..||+.- ..||.|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 499999999999999731 2499998877543
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.39 E-value=0.38 Score=35.96 Aligned_cols=35 Identities=29% Similarity=0.881 Sum_probs=30.4
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~ 178 (392)
....|.+|-+.|.+++.+.+-|.|+-.+|.+|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35689999999998888888899999999999544
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.75 E-value=0.2 Score=55.17 Aligned_cols=48 Identities=21% Similarity=0.692 Sum_probs=37.4
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCCCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHETV 198 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~~ 198 (392)
..|.||++ .+...+.+ |+|.||.+|+..-+... .-||+||..+.....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 68999999 34466666 99999999999877532 249999998876543
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.65 E-value=0.35 Score=48.66 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=37.9
Q ss_pred cCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~ 197 (392)
+++.|+.|+|++...++ ..-.| ||...|.-|...--+ -+..||-||+....+.
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 56789999999987664 33445 887777777554332 3667999999887654
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=0.27 Score=54.55 Aligned_cols=41 Identities=24% Similarity=0.714 Sum_probs=31.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 191 (392)
...|..|--.++.+ .+..- |+|.||.+|+. .....||-|+.
T Consensus 840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccch
Confidence 35899999888654 33333 99999999998 45556999977
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=0.27 Score=48.96 Aligned_cols=42 Identities=29% Similarity=0.750 Sum_probs=29.4
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
.|--|--.+. .--|+.| |+|+||.+|... ...+.||+|-..|
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 4666644432 3467889 999999999654 4466899996544
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.27 E-value=0.36 Score=53.92 Aligned_cols=35 Identities=23% Similarity=0.614 Sum_probs=28.3
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL 180 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl 180 (392)
.++.|.+|.-.+... .-.+.| |||.||.+||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 468999999888664 455677 99999999998764
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.25 E-value=0.58 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.711 Sum_probs=22.0
Q ss_pred ecCCCCCcCChhHHHHHHhcCCCCCc
Q 016298 163 LLPKCNHAFHISCIDTWLSSHINCPM 188 (392)
Q Consensus 163 ~lp~C~H~FH~~CI~~Wl~~~~tCPl 188 (392)
... |+|+.|..|...|+.....||.
T Consensus 1045 Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hcc-ccccccHHHHHHHHhcCCcCCC
Confidence 344 9999999999999999999984
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=83.98 E-value=0.9 Score=41.20 Aligned_cols=57 Identities=25% Similarity=0.642 Sum_probs=36.5
Q ss_pred cCCcccccccccccCCcee---------ecCCCCC-cCChhHHHHHHhc-------------------------------
Q 016298 144 EGTECSVCLNEFQEDETVR---------LLPKCNH-AFHISCIDTWLSS------------------------------- 182 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr---------~lp~C~H-~FH~~CI~~Wl~~------------------------------- 182 (392)
++..|+||||--.+...+. -.= |+- .=|..||+++-+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 3578999999855432111 111 442 3578999998641
Q ss_pred CCCCCcccccccCCCCCCC
Q 016298 183 HINCPMCRAHIVHETVTAP 201 (392)
Q Consensus 183 ~~tCPlCR~~v~~~~~~~~ 201 (392)
+..||+||..|.......+
T Consensus 80 ~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cccCccccCceeceEEchH
Confidence 1249999999988765543
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.02 E-value=0.41 Score=55.38 Aligned_cols=45 Identities=24% Similarity=0.736 Sum_probs=37.3
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
..|.||++.+.....+. .|+|.+|..|+..|+..+..||.|....
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 47999999987533332 3999999999999999999999998543
No 98
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.77 E-value=1 Score=48.34 Aligned_cols=48 Identities=27% Similarity=0.852 Sum_probs=40.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT 199 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 199 (392)
..+.|.||++++ ..+..+ |. |..|+.+|+..+..||+|+..+..+...
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 367999999998 466666 88 9999999999999999999988776543
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.64 E-value=0.88 Score=44.26 Aligned_cols=51 Identities=22% Similarity=0.711 Sum_probs=35.5
Q ss_pred ccCCcccccccccccCCce-eecCCCC-----CcCChhHHHHHHhcC--------CCCCccccccc
Q 016298 143 IEGTECSVCLNEFQEDETV-RLLPKCN-----HAFHISCIDTWLSSH--------INCPMCRAHIV 194 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~v-r~lp~C~-----H~FH~~CI~~Wl~~~--------~tCPlCR~~v~ 194 (392)
..+..|-||+..=++.-.. -+-| |. |-.|..||..|+..+ .+||.|++...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3467899999875543221 2345 63 789999999999422 24999998764
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.22 E-value=0.8 Score=33.40 Aligned_cols=29 Identities=28% Similarity=0.761 Sum_probs=21.8
Q ss_pred CC-CcCChhHHHHHHhcCCCCCcccccccC
Q 016298 167 CN-HAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 167 C~-H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
|. |..|..|+...|.....||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 76 999999999999999999999988764
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.14 E-value=0.79 Score=44.21 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=37.5
Q ss_pred cCCcccccccccc--cCCceeecCCCCCcCChhHHHHHHhcCC-CCC--cccccc
Q 016298 144 EGTECSVCLNEFQ--EDETVRLLPKCNHAFHISCIDTWLSSHI-NCP--MCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~--~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP--lCR~~v 193 (392)
.+..|+||..+-. ++-.+.+-|.|-|..|..|+++-+.... .|| -|-.-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999998743 3335556678999999999999987655 599 785544
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=76.98 E-value=0.97 Score=44.21 Aligned_cols=51 Identities=29% Similarity=0.852 Sum_probs=37.7
Q ss_pred CCcccccccccccCCc-eeecCCCC-----CcCChhHHHHHHh--cCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDET-VRLLPKCN-----HAFHISCIDTWLS--SHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~-vr~lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~v~~~ 196 (392)
+..|-||.++...... ....| |. +..|..|++.|+. ...+|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998654321 34566 65 6689999999998 455699998876554
No 103
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=76.93 E-value=4.4 Score=28.18 Aligned_cols=24 Identities=17% Similarity=0.276 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 58 YVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 58 ~vIiii~Il~~~~llv~~~~i~~r 81 (392)
++-|+++++++++++++..++|.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaC 28 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYAC 28 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555554
No 104
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=76.33 E-value=3.7 Score=33.84 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=21.7
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 50 HQSNSTPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 50 ~~~~~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
.....|+-++.+++++++++.++-+.|.+..|
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 33457888888887777777777666555444
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.84 E-value=1.3 Score=41.87 Aligned_cols=39 Identities=36% Similarity=0.796 Sum_probs=28.9
Q ss_pred ccccccccccCCceeecCCCCC-cCChhHHHHHHhcCCCCCccccccc
Q 016298 148 CSVCLNEFQEDETVRLLPKCNH-AFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H-~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
|-.|-+. ...|.++| |.| .+|..|=.. -.+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 7777665 45689999 997 588888554 455999987654
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.84 E-value=0.85 Score=49.43 Aligned_cols=43 Identities=23% Similarity=0.547 Sum_probs=30.9
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 190 (392)
-..|.||+..|......-+.+.|||..|..|+..- -+.+|| |.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CC
Confidence 45799999888665433233359999999999884 456788 53
No 107
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=2.5 Score=41.87 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=35.0
Q ss_pred ccccccccc-ccCC-ceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCC
Q 016298 147 ECSVCLNEF-QEDE-TVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHE 196 (392)
Q Consensus 147 ~C~ICle~~-~~~~-~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~ 196 (392)
.|++|..+. -..+ .+.+-+ |+|..|..|++.-+.. ...||.|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 588888763 2333 334446 9999999999998765 45699997766543
No 108
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=73.70 E-value=7.2 Score=37.44 Aligned_cols=28 Identities=25% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 54 STPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 54 ~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
.+-+++|++|+|.+.+|+++++|.++.+
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5567777777777777777777766655
No 109
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=72.48 E-value=2.3 Score=47.30 Aligned_cols=54 Identities=20% Similarity=0.642 Sum_probs=39.7
Q ss_pred cCCcccccccccccCCceeecCCCC-----CcCChhHHHHHHhcCC--CCCcccccccCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSSHI--NCPMCRAHIVHETVT 199 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~~--tCPlCR~~v~~~~~~ 199 (392)
+...|-||..+=..++.+ .-| |+ ...|.+|+.+|+.-.. .|-+|+.++..++.-
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 457899999886555443 445 65 4589999999998544 499999988766543
No 110
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.25 E-value=1.6 Score=45.12 Aligned_cols=38 Identities=29% Similarity=0.694 Sum_probs=27.9
Q ss_pred cCCcccccccccccC-CceeecCCCCCcCChhHHHHHHhc
Q 016298 144 EGTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSS 182 (392)
Q Consensus 144 ~~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~ 182 (392)
...+|.||..++... +...+. +|+|.||.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 357899999444433 444444 49999999999998864
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.94 E-value=2.1 Score=42.40 Aligned_cols=31 Identities=23% Similarity=0.633 Sum_probs=23.7
Q ss_pred CCCcCChhHHHHHHh-------------cCCCCCcccccccCCC
Q 016298 167 CNHAFHISCIDTWLS-------------SHINCPMCRAHIVHET 197 (392)
Q Consensus 167 C~H~FH~~CI~~Wl~-------------~~~tCPlCR~~v~~~~ 197 (392)
|.-.+|.+|+.+|+. ++-+||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 456788899999984 3447999999886554
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.37 E-value=2.9 Score=36.94 Aligned_cols=52 Identities=17% Similarity=0.414 Sum_probs=37.2
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~v~~~ 196 (392)
--+|-||.|.-.+..-++.---||-..|..|-..-++ .+..||+|++++...
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3589999998766443332225999999988666433 567899999988654
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=68.42 E-value=3 Score=46.40 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=39.1
Q ss_pred cCCcccccccccccCC---ceeecCCCCCcCChhHHHHHHhc------CCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDE---TVRLLPKCNHAFHISCIDTWLSS------HINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~---~vr~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~ 197 (392)
+.+.|.+|.-++..++ .+-.+..|+|.||..||..|+.+ +-.|++|..-|..+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 4567888888887632 22223359999999999999853 445999988886654
No 114
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=67.46 E-value=6.2 Score=34.41 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=15.3
Q ss_pred CCCCch--HHHHHHHHHHHHHHHHHHHHHHh
Q 016298 53 NSTPPY--VIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 53 ~~fs~~--vIiii~Il~~~~llv~~~~i~~r 81 (392)
+.|+.- +.|+++++++++++++++.|.++
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHH
Confidence 456543 34556666666665554444443
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=66.43 E-value=5 Score=44.48 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=31.1
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPM 188 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPl 188 (392)
..|.+|-..+.. . ...-+.|+|.-|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G-~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-V-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-e-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 478888766543 1 2233469999999999999998888877
No 116
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=65.52 E-value=1.7 Score=47.77 Aligned_cols=46 Identities=35% Similarity=0.841 Sum_probs=35.9
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC---CCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH---INCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~v~ 194 (392)
..+|+||+..+... ..+ +|.|.|+..|+..-|... ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 57899999999875 334 499999999988766544 35999996664
No 117
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=64.84 E-value=6 Score=45.90 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Q 016298 54 STPPYVIIFVALVLSFILFLAFYVIKSKTGWCNSET 89 (392)
Q Consensus 54 ~fs~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR~ 89 (392)
...|++||++++|+++++|.++.++..|+.|.+|.+
T Consensus 974 ~~vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r 1009 (1030)
T KOG3637|consen 974 RPVPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNR 1009 (1030)
T ss_pred CccceeeehHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 335677788899999988888888888888887655
No 118
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=64.79 E-value=4.5 Score=40.41 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=33.1
Q ss_pred cCCcccccccccccCCceeecCCC--CCcCChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKC--NHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C--~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
+-.+|+||.+.+... +.. | ||+-|..|-. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~P--i~Q---C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP--IFQ---CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc--cee---cCCCcEehhhhhh---hhcccCCccccccc
Confidence 457999999999764 222 6 5888888854 46777999999986
No 119
>PF15102 TMEM154: TMEM154 protein family
Probab=64.47 E-value=3.6 Score=36.85 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=3.9
Q ss_pred HHHHHHh
Q 016298 175 CIDTWLS 181 (392)
Q Consensus 175 CI~~Wl~ 181 (392)
=|++|+.
T Consensus 129 eldkwm~ 135 (146)
T PF15102_consen 129 ELDKWMN 135 (146)
T ss_pred HHHhHHH
Confidence 3566664
No 120
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=62.57 E-value=9.8 Score=34.70 Aligned_cols=14 Identities=29% Similarity=0.978 Sum_probs=6.5
Q ss_pred CcCCCCCCCCcccc
Q 016298 20 YYCDPNCPFNYNCV 33 (392)
Q Consensus 20 ~~c~~~c~~~~~cy 33 (392)
.||-..|-.-|-|-
T Consensus 27 ~~CCG~C~~ryCC~ 40 (179)
T PF13908_consen 27 TFCCGTCSLRYCCS 40 (179)
T ss_pred ceecCCccCcchhh
Confidence 55555555333343
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=61.31 E-value=2.7 Score=45.52 Aligned_cols=41 Identities=32% Similarity=0.773 Sum_probs=26.9
Q ss_pred CCcccccccc-----cccCCceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298 145 GTECSVCLNE-----FQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189 (392)
Q Consensus 145 ~~~C~ICle~-----~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC 189 (392)
+-.|.+|... |+.....+... |+++||..|+.. ....||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCch
Confidence 4578888332 33333445554 999999999554 44459999
No 122
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=60.49 E-value=9.9 Score=37.70 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=21.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 52 SNSTPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 52 ~~~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
...|.|+-|.++++|+.+++++++|++.+|
T Consensus 255 ~aaF~Pcgiaalvllil~vvliiLYiWlyr 284 (295)
T TIGR01478 255 TSTFLPYGIAALVLIILTVVLIILYIWLYR 284 (295)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888777777777777777666655
No 123
>PTZ00370 STEVOR; Provisional
Probab=59.80 E-value=10 Score=37.68 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 52 SNSTPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 52 ~~~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
...|.|+-|.++++|+.+++++++|++.+|
T Consensus 251 saaF~Pygiaalvllil~vvliilYiwlyr 280 (296)
T PTZ00370 251 SSAFYPYGIAALVLLILAVVLIILYIWLYR 280 (296)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888777777777777777666655
No 124
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=59.66 E-value=16 Score=43.23 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=10.2
Q ss_pred CcCChhHHHHHHh
Q 016298 169 HAFHISCIDTWLS 181 (392)
Q Consensus 169 H~FH~~CI~~Wl~ 181 (392)
-+|..+=++.|++
T Consensus 397 ~Vl~~e~L~~v~~ 409 (1204)
T TIGR00917 397 PVLDDDNLKLLFD 409 (1204)
T ss_pred ccCCHHHHHHHHH
Confidence 4788888888874
No 125
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.15 E-value=9.2 Score=32.85 Aligned_cols=46 Identities=22% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCcccccccccccCC----------ceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298 145 GTECSVCLNEFQEDE----------TVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190 (392)
Q Consensus 145 ~~~C~ICle~~~~~~----------~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 190 (392)
...|--|+..|.... ....-++|++.|+.+|=.=|-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 457999999986531 1122446999999999777777778899995
No 126
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.48 E-value=7.5 Score=40.06 Aligned_cols=44 Identities=18% Similarity=0.455 Sum_probs=36.9
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMC 189 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlC 189 (392)
--.|+|=.+.=.+......|. |||+...+-|.+-.+... -||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 458999888877777888898 999999999999776544 49999
No 127
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.00 E-value=7.4 Score=36.51 Aligned_cols=40 Identities=43% Similarity=0.940 Sum_probs=28.2
Q ss_pred CCcccccccc-----cccCCceeecCCCCCcCChhHHHHHHhcCCCCCccc
Q 016298 145 GTECSVCLNE-----FQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCR 190 (392)
Q Consensus 145 ~~~C~ICle~-----~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 190 (392)
+..|.+|-++ |+.. .+..-++|+-+||..|..+ ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 5688999753 4443 3444456999999999762 6699994
No 128
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.39 E-value=11 Score=31.67 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc
Q 016298 61 IFVALVLSFILFLAFYVIKSKTGWCNS 87 (392)
Q Consensus 61 iii~Il~~~~llv~~~~i~~r~~~~~r 87 (392)
++++++++++++.+++++..||..|++
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~k 45 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWYK 45 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555555555555566556544443
No 130
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.10 E-value=7.9 Score=28.65 Aligned_cols=42 Identities=33% Similarity=0.824 Sum_probs=21.6
Q ss_pred ccccccccccCC------ceeecCCCCCcCChhHHHHHH-hcCCCCCccc
Q 016298 148 CSVCLNEFQEDE------TVRLLPKCNHAFHISCIDTWL-SSHINCPMCR 190 (392)
Q Consensus 148 C~ICle~~~~~~------~vr~lp~C~H~FH~~CI~~Wl-~~~~tCPlCR 190 (392)
|.-|+..|.... ....-|+|++.|+.+| |-++ +.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 566777776642 3445567999999999 3332 3455699883
No 131
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=52.78 E-value=24 Score=39.73 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=4.7
Q ss_pred ccchhhHHHHH
Q 016298 290 SLDSSLAETIC 300 (392)
Q Consensus 290 S~~sssa~~~~ 300 (392)
|+|-=+.+.+-
T Consensus 636 SLDGr~nA~VR 646 (807)
T PF10577_consen 636 SLDGRSNAQVR 646 (807)
T ss_pred ecCCCcchhee
Confidence 55444443333
No 132
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=52.16 E-value=7.4 Score=37.03 Aligned_cols=46 Identities=28% Similarity=0.651 Sum_probs=36.0
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
..|.+|..-.-.+ +|.-. |+-.+|..|+.+.+++...||.|.--+.
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhcccC
Confidence 4799998876543 44444 8889999999999999999999954443
No 133
>PF15050 SCIMP: SCIMP protein
Probab=49.43 E-value=19 Score=31.33 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q 016298 58 YVIIFVALVLSFILF 72 (392)
Q Consensus 58 ~vIiii~Il~~~~ll 72 (392)
++|+.++|++.-+.+
T Consensus 9 WiiLAVaII~vS~~l 23 (133)
T PF15050_consen 9 WIILAVAIILVSVVL 23 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555544443333
No 134
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.17 E-value=6.6 Score=43.79 Aligned_cols=44 Identities=20% Similarity=0.506 Sum_probs=32.4
Q ss_pred cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298 144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189 (392)
Q Consensus 144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC 189 (392)
.+..|.-|.+..-.. +.+.++- |+|+||..|+..-..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 456899999886532 3566776 999999999988766555 5555
No 135
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=48.66 E-value=15 Score=30.70 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 016298 58 YVIIFVALVLSFILFLAFYVIK 79 (392)
Q Consensus 58 ~vIiii~Il~~~~llv~~~~i~ 79 (392)
+.++++++++.+.+++++++++
T Consensus 61 ~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhhe
Confidence 3444455555444444444443
No 136
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=48.62 E-value=30 Score=36.87 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=11.3
Q ss_pred CChhHHHHHHhcCCC
Q 016298 171 FHISCIDTWLSSHIN 185 (392)
Q Consensus 171 FH~~CI~~Wl~~~~t 185 (392)
.+..++..||+.+..
T Consensus 290 h~kGsL~dyL~~nti 304 (534)
T KOG3653|consen 290 HPKGSLCDYLKANTI 304 (534)
T ss_pred ccCCcHHHHHHhccc
Confidence 346799999987764
No 137
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=48.60 E-value=16 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.612 Sum_probs=20.3
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhc---C--CCCCccccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS---H--INCPMCRAH 192 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~--~tCPlCR~~ 192 (392)
..|+|....+.. .+|... |.|.-+.+ ++.||.. . -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468888887765 366665 99885432 4556642 2 249999753
No 138
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=47.71 E-value=8.5 Score=40.26 Aligned_cols=32 Identities=31% Similarity=0.725 Sum_probs=26.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
++..|+||..-|.+ ..+|| |+|..|..|...-
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhh
Confidence 56789999998876 67888 9999999997743
No 139
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=47.64 E-value=12 Score=37.78 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=45.3
Q ss_pred cCCCHHHHhhcceeEecCCCCcc--cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccc
Q 016298 121 VGLQQSVINSITVCRYKKGEGLI--EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRA 191 (392)
Q Consensus 121 ~gl~~~~i~~lp~~~~~~~~~~~--~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 191 (392)
..|.++.---.|...+.+..... ....|-.|.++.......+.-. |.|.||.+|=.---.+-..||-|..
T Consensus 304 ~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 304 PHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred hHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 34444444445555554433332 3456999988887776666654 9999999994443355667999963
No 140
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.48 E-value=11 Score=23.86 Aligned_cols=23 Identities=30% Similarity=0.756 Sum_probs=12.6
Q ss_pred cccccccccccCCceeecCCCCCcC
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAF 171 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~F 171 (392)
.|+-|...+... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666665332 33444566666
No 141
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.11 E-value=23 Score=30.62 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 016298 59 VIIFVALV 66 (392)
Q Consensus 59 vIiii~Il 66 (392)
+||+++||
T Consensus 6 ~iii~~i~ 13 (130)
T PF12273_consen 6 AIIIVAIL 13 (130)
T ss_pred HHHHHHHH
Confidence 33344443
No 142
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.11 E-value=10 Score=39.82 Aligned_cols=36 Identities=22% Similarity=0.690 Sum_probs=29.2
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS 182 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 182 (392)
....|-||.+.+.. .+..+. |+|.|+..|+...+..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 45799999999876 345555 9999999999998853
No 143
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=44.22 E-value=20 Score=36.27 Aligned_cols=49 Identities=20% Similarity=0.552 Sum_probs=36.0
Q ss_pred CcccccccccccCC-ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 146 TECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 146 ~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
..|+||.+.....+ ...-.| |+|..|..|+..-...+..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 68999999874433 333344 77777888888878889999999955443
No 144
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=42.82 E-value=15 Score=34.56 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 016298 61 IFVALVLSFILFLAFYVIKSKTGWCNSETNE 91 (392)
Q Consensus 61 iii~Il~~~~llv~~~~i~~r~~~~~rR~~~ 91 (392)
|.|++++.++.|+.-++++.+|-...++|++
T Consensus 104 ITvSlImViaAliTtlvlK~C~~~s~~~r~~ 134 (205)
T PF15298_consen 104 ITVSLIMVIAALITTLVLKNCCAQSQNRRRN 134 (205)
T ss_pred EeeehhHHHHHhhhhhhhhhhhhhhcccCCC
Confidence 3444444444444444555553333344433
No 145
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.97 E-value=11 Score=26.69 Aligned_cols=43 Identities=26% Similarity=0.625 Sum_probs=29.1
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHh------cCCCCCccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS------SHINCPMCR 190 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~------~~~tCPlCR 190 (392)
.|.||...-..++.+.-- .|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388999855555555555 4999999999875432 134587775
No 146
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=41.74 E-value=54 Score=26.85 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=17.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 52 SNSTPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 52 ~~~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
.++.++++.+.+++.+.++++++++++..+
T Consensus 33 a~kysIVI~FWv~LA~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 33 ANKYSIVIAFWVSLAAFVVFLFLILLYMSW 62 (90)
T ss_pred ccceeeehhHHHHHHHHHHHHHHHHHHHhc
Confidence 467777666655555555555555555544
No 147
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=39.02 E-value=52 Score=25.75 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016298 60 IIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 60 Iiii~Il~~~~llv~~~~i~~r 81 (392)
.+++.+++++++.+++|.+|.|
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666777777766
No 148
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.74 E-value=28 Score=34.06 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT 199 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 199 (392)
.-.|+|=--+|.....-..+-.|||+|-..-+.+. ...+|++|...+...+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 34799988887665543334349999999887773 367899999988776543
No 149
>PHA03049 IMV membrane protein; Provisional
Probab=36.51 E-value=56 Score=25.53 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016298 60 IIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 60 Iiii~Il~~~~llv~~~~i~~r 81 (392)
.+++.+++++++.+++|.+|.|
T Consensus 4 d~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666667777766
No 150
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.83 E-value=16 Score=37.79 Aligned_cols=44 Identities=23% Similarity=0.504 Sum_probs=32.1
Q ss_pred CCcccccccccccCC--ceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298 145 GTECSVCLNEFQEDE--TVRLLPKCNHAFHISCIDTWLSSHINCPMC 189 (392)
Q Consensus 145 ~~~C~ICle~~~~~~--~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC 189 (392)
-..|+.|.-.++-.+ ....-. |+|-|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 457888877654433 233333 89999999999998888877666
No 151
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=35.73 E-value=34 Score=33.96 Aligned_cols=23 Identities=17% Similarity=0.220 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016298 56 PPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i 78 (392)
+.+|=|++|+.+++++++.++.+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhh
Confidence 34444444544444444333333
No 152
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=35.60 E-value=21 Score=35.18 Aligned_cols=49 Identities=29% Similarity=0.658 Sum_probs=34.8
Q ss_pred CCcccccccccccCCceeec---CCCCCcCChhHHHHHHh---------cCCCCCcccccc
Q 016298 145 GTECSVCLNEFQEDETVRLL---PKCNHAFHISCIDTWLS---------SHINCPMCRAHI 193 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~l---p~C~H~FH~~CI~~Wl~---------~~~tCPlCR~~v 193 (392)
...|-+|.+++...+..+.. |.|+-.+|..|+-.-+. ....||.|+..+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36899999999554544432 35888999999999442 133599998844
No 153
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.49 E-value=34 Score=37.60 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=5.8
Q ss_pred ceeeccCCCc
Q 016298 333 AIVAKQDGAY 342 (392)
Q Consensus 333 ~~~~~~~~~~ 342 (392)
-+-+||+|.|
T Consensus 520 RlkAKRKGyy 529 (684)
T PF12877_consen 520 RLKAKRKGYY 529 (684)
T ss_pred HHHHHhcCCC
Confidence 3456666655
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=33.94 E-value=1.3e+02 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMC 189 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlC 189 (392)
--.|++--+.-.+......|. |||+.-.+-++.--+... -||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 457888777766666677787 999999999888544322 39999
No 155
>PRK14710 hypothetical protein; Provisional
Probab=33.79 E-value=26 Score=27.77 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=18.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 016298 53 NSTPPYVIIFVALVLSFILFLAFYVIKS 80 (392)
Q Consensus 53 ~~fs~~vIiii~Il~~~~llv~~~~i~~ 80 (392)
.+++-++|.+++|+..+++.++-+++..
T Consensus 6 sn~skm~ififaiii~v~lcv~tylyl~ 33 (86)
T PRK14710 6 SNLSKMIIFIFAIIIIVVLCVITYLYLY 33 (86)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhheeee
Confidence 4567778877777777776666555543
No 156
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.93 E-value=22 Score=29.69 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Q 016298 54 STPPYVIIFVALVLSFILFLAFYVIKS 80 (392)
Q Consensus 54 ~fs~~vIiii~Il~~~~llv~~~~i~~ 80 (392)
....++|+++++++.++++.+++.|..
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEE
Confidence 567778888888777777755555543
No 157
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.15 E-value=97 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016298 59 VIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 59 vIiii~Il~~~~llv~~~~i~~r 81 (392)
+..+++.++.+++.+++|.+++|
T Consensus 9 Iv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444445555556666666666
No 158
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.08 E-value=66 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 016298 70 ILFLAFYVIKSK 81 (392)
Q Consensus 70 ~llv~~~~i~~r 81 (392)
++++++|+++++
T Consensus 45 il~VilwfvCC~ 56 (94)
T PF05393_consen 45 ILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 159
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.68 E-value=41 Score=33.73 Aligned_cols=11 Identities=0% Similarity=0.452 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 016298 65 LVLSFILFLAF 75 (392)
Q Consensus 65 Il~~~~llv~~ 75 (392)
||+.+++++++
T Consensus 265 IliIVLIMvII 275 (299)
T PF02009_consen 265 ILIIVLIMVII 275 (299)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 160
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.63 E-value=71 Score=24.19 Aligned_cols=46 Identities=26% Similarity=0.702 Sum_probs=33.7
Q ss_pred CcccccccccccCC-ceeecCCCC--CcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 146 TECSVCLNEFQEDE-TVRLLPKCN--HAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 146 ~~C~ICle~~~~~~-~vr~lp~C~--H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
..|-.|-.++..+. ..++ |. ..|+.+|.+.-| +..||.|.-.+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 45777877776654 3333 65 689999999976 78899998777554
No 161
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=26 Score=34.86 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=29.4
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI 184 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~ 184 (392)
-..|.+|.|.+++..-|..-..=.|.||..|-.+-++.+.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 4789999999988655532111259999999999887543
No 162
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.08 E-value=25 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=18.4
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
.+...|.+|...|..-..-..-..||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3467899999999654332233359999999987654
No 163
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.95 E-value=27 Score=23.67 Aligned_cols=25 Identities=36% Similarity=0.861 Sum_probs=15.5
Q ss_pred cccccccccccCC--------ceeecCCCCCcCC
Q 016298 147 ECSVCLNEFQEDE--------TVRLLPKCNHAFH 172 (392)
Q Consensus 147 ~C~ICle~~~~~~--------~vr~lp~C~H~FH 172 (392)
+|+=|...|..++ .++-. .|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~-~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCS-KCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECC-CCCCEeC
Confidence 5788888876654 23333 3777764
No 164
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=30.81 E-value=18 Score=35.39 Aligned_cols=9 Identities=67% Similarity=1.184 Sum_probs=7.9
Q ss_pred CcccCCCCc
Q 016298 2 KHRKLFPAS 10 (392)
Q Consensus 2 ~~~~~~~~~ 10 (392)
|||||||+.
T Consensus 142 KHRKlmPTa 150 (337)
T KOG0805|consen 142 KHRKLMPTA 150 (337)
T ss_pred cccccccch
Confidence 899999983
No 165
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.80 E-value=44 Score=30.13 Aligned_cols=6 Identities=33% Similarity=0.800 Sum_probs=2.4
Q ss_pred ccccCc
Q 016298 84 WCNSET 89 (392)
Q Consensus 84 ~~~rR~ 89 (392)
||.+|+
T Consensus 51 lcssRK 56 (189)
T PF05568_consen 51 LCSSRK 56 (189)
T ss_pred HHhhhh
Confidence 343444
No 166
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=29.39 E-value=1.1e+02 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016298 56 PPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i 78 (392)
...+|+++++++++++-+++.++
T Consensus 57 ~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 57 KRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777666665544
No 167
>PLN02189 cellulose synthase
Probab=29.27 E-value=71 Score=37.20 Aligned_cols=54 Identities=19% Similarity=0.462 Sum_probs=36.5
Q ss_pred cCCccccccccccc---CCceeecCCCCCcCChhHHHHH-HhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQE---DETVRLLPKCNHAFHISCIDTW-LSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~---~~~vr~lp~C~H~FH~~CI~~W-l~~~~tCPlCR~~v~~~~ 197 (392)
....|.||-+++.. ++.-+.-..|+--.|..|.+-= -..++.||.|++.+.--.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 35689999999753 3333333347777999998532 235677999999886433
No 168
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=28.90 E-value=57 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=13.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016298 53 NSTPPYVIIFVALVLSFILFLAFYVIK 79 (392)
Q Consensus 53 ~~fs~~vIiii~Il~~~~llv~~~~i~ 79 (392)
..|+..=+|...||+..++.++|++|+
T Consensus 156 s~FD~~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 156 STFDAASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 467766555444444444444444443
No 169
>PTZ00358 hypothetical protein; Provisional
Probab=28.88 E-value=76 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.745 Sum_probs=18.1
Q ss_pred CCCCCCCCcCCCCCCCCccccc
Q 016298 13 NGTTSCSYYCDPNCPFNYNCVP 34 (392)
Q Consensus 13 ~~~~~~~~~c~~~c~~~~~cy~ 34 (392)
-|-=+|-.||-|.|-.-|.||.
T Consensus 125 yCGWKCnLFcRPCCkSQyiCYg 146 (367)
T PTZ00358 125 YCGWKCNLFCRPCCKSQYICYG 146 (367)
T ss_pred hcccccCcccccccccceeeeh
Confidence 3556788999999998777996
No 170
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.81 E-value=45 Score=31.92 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=13.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 016298 55 TPPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 55 fs~~vIiii~Il~~~~llv~~~~i 78 (392)
...++.|+|+|++.++++++|.+|
T Consensus 12 ~N~iLNiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhe
Confidence 344556666666655555555444
No 171
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=28.74 E-value=90 Score=29.18 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=16.4
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHH
Q 016298 50 HQSNSTPPYVIIFVALVLSFILFLAF 75 (392)
Q Consensus 50 ~~~~~fs~~vIiii~Il~~~~llv~~ 75 (392)
|+...|..-||+.+++++.+||++=|
T Consensus 158 FD~~SFiGGIVL~LGv~aI~ff~~KF 183 (186)
T PF05283_consen 158 FDAASFIGGIVLTLGVLAIIFFLYKF 183 (186)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 56666666666666666666665544
No 172
>PHA03283 envelope glycoprotein E; Provisional
Probab=28.48 E-value=85 Score=33.83 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016298 56 PPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i 78 (392)
-.++.+++++++++.++++.+.+
T Consensus 397 ~~~l~~~~~~~~~~~~~~~~l~v 419 (542)
T PHA03283 397 RHYLAFLLAIICTCAALLVALVV 419 (542)
T ss_pred cccchhHHHHHHHHHHHHHHHhh
Confidence 33444444444444444333333
No 173
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.28 E-value=86 Score=25.33 Aligned_cols=52 Identities=19% Similarity=0.483 Sum_probs=19.8
Q ss_pred cCCcccccccccccC---Cc-eeecCCCCCcCChhHHHHHH-hcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQED---ET-VRLLPKCNHAFHISCIDTWL-SSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~---~~-vr~lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~v~~~ 196 (392)
....|.||-+++... +. +... .|+--.|..|.+-=. ..++.||.|++.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~-eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACH-ECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-S-SS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEc-ccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 467899999987442 22 2222 366777888877543 3567799999877543
No 174
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=27.66 E-value=34 Score=26.72 Aligned_cols=12 Identities=25% Similarity=0.933 Sum_probs=8.9
Q ss_pred cCChhHHHHHHh
Q 016298 170 AFHISCIDTWLS 181 (392)
Q Consensus 170 ~FH~~CI~~Wl~ 181 (392)
.||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999985
No 175
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.28 E-value=49 Score=31.64 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=4.7
Q ss_pred CchHHHHHHHHHH
Q 016298 56 PPYVIIFVALVLS 68 (392)
Q Consensus 56 s~~vIiii~Il~~ 68 (392)
.+++-|+.+++++
T Consensus 38 ~I~iaiVAG~~tV 50 (221)
T PF08374_consen 38 KIMIAIVAGIMTV 50 (221)
T ss_pred eeeeeeecchhhh
Confidence 3333333333333
No 176
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=26.62 E-value=48 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=23.8
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHH
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL 180 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl 180 (392)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57889988876543222223599999999977643
No 177
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.45 E-value=1e+02 Score=36.16 Aligned_cols=53 Identities=17% Similarity=0.480 Sum_probs=35.4
Q ss_pred CCccccccccccc---CCceeecCCCCCcCChhHHHH-HHhcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQE---DETVRLLPKCNHAFHISCIDT-WLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~---~~~vr~lp~C~H~FH~~CI~~-Wl~~~~tCPlCR~~v~~~~ 197 (392)
...|.||-+++.. ++.-..-..|+--.|..|.+= .-..++.||.|++.+.--.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 4589999999743 332222223677799999852 2235678999999886433
No 178
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=26.31 E-value=39 Score=21.78 Aligned_cols=37 Identities=22% Similarity=0.561 Sum_probs=23.7
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHI 193 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v 193 (392)
.|..|-+.+...+..... =+..||..|+ .|..|+..|
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 378888888765333222 4678888774 467776654
No 179
>PTZ00087 thrombosponding-related protein; Provisional
Probab=26.10 E-value=76 Score=31.49 Aligned_cols=29 Identities=7% Similarity=0.238 Sum_probs=14.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 53 NSTPPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 53 ~~fs~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
..|.+++|++-.|++..++.++|.+||.+
T Consensus 294 st~~i~~i~~piv~vi~v~~ily~ify~~ 322 (340)
T PTZ00087 294 STFKILIILLPIVLIICVMGILYHIFYKK 322 (340)
T ss_pred CcceEeeeehhHHHHHHHHHHHHHHhhhc
Confidence 35666655444444444444444444444
No 180
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=26.03 E-value=1e+02 Score=23.14 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=17.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 016298 54 STPPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 54 ~fs~~vIiii~Il~~~~llv~~~~i 78 (392)
..+|+-+|+.+++++++++++++.+
T Consensus 27 ~~~p~~~Ii~gii~~~~fV~~Lv~l 51 (56)
T PF11174_consen 27 QGSPVHFIIVGIILAALFVAGLVLL 51 (56)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888777777666555
No 181
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=25.55 E-value=39 Score=30.07 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016298 59 VIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 59 vIiii~Il~~~~llv~~~~i 78 (392)
-..++++.+.++++|++++|
T Consensus 34 ~l~LlsLgl~~LLLV~IcVi 53 (138)
T PF03954_consen 34 RLLLLSLGLSLLLLVVICVI 53 (138)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34455555555666655555
No 182
>PHA02692 hypothetical protein; Provisional
Probab=25.20 E-value=1.6e+02 Score=23.23 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.4
Q ss_pred CCchHHHHH
Q 016298 55 TPPYVIIFV 63 (392)
Q Consensus 55 fs~~vIiii 63 (392)
+.++.++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 333333333
No 183
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=51 Score=32.25 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.7
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS 181 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~ 181 (392)
..+-+.|..||..+.+ ..+.| =||+|+.+||.+++.
T Consensus 40 iK~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 3356789999999876 45566 799999999998863
No 184
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.97 E-value=1e+02 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016298 60 IIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 60 Iiii~Il~~~~llv~~~~i~~r 81 (392)
.|+++++++++++++|+.+..+
T Consensus 5 ~iv~~~~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 5 QIVGGVGAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 185
>PHA02844 putative transmembrane protein; Provisional
Probab=24.47 E-value=70 Score=25.53 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 016298 74 AFYVIKSK 81 (392)
Q Consensus 74 ~~~~i~~r 81 (392)
++..+|.|
T Consensus 63 ~~~flYLK 70 (75)
T PHA02844 63 FLTFLYLK 70 (75)
T ss_pred HHHHHHHh
Confidence 33334444
No 186
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=23.93 E-value=47 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=26.8
Q ss_pred ccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 148 CSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 148 C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
|+.|-..+...+.+.. . -+..||..| -+|-.|+..|....
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCCe
Confidence 6778888876554422 2 678888776 35888887775543
No 187
>PF15069 FAM163: FAM163 family
Probab=23.72 E-value=41 Score=30.11 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016298 59 VIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 59 vIiii~Il~~~~llv~~~~i 78 (392)
|+|..+||++++||.++.++
T Consensus 6 vVItGgILAtVILLcIIaVL 25 (143)
T PF15069_consen 6 VVITGGILATVILLCIIAVL 25 (143)
T ss_pred EEEechHHHHHHHHHHHHHH
Confidence 34455666666666555444
No 188
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02400 cellulose synthase
Probab=22.79 E-value=1e+02 Score=36.09 Aligned_cols=53 Identities=15% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCccccccccccc---CCceeecCCCCCcCChhHHHH-HHhcCCCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQE---DETVRLLPKCNHAFHISCIDT-WLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~---~~~vr~lp~C~H~FH~~CI~~-Wl~~~~tCPlCR~~v~~~~ 197 (392)
...|.||-+++.. ++.-..--.|+--.|..|.+- .-..++.||.|++...--.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 5689999999743 332222123666789999842 2235677999999887443
No 190
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=22.74 E-value=1e+02 Score=29.16 Aligned_cols=7 Identities=0% Similarity=-0.529 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 016298 75 FYVIKSK 81 (392)
Q Consensus 75 ~~~i~~r 81 (392)
++..|++
T Consensus 118 ~~~~Y~~ 124 (202)
T PF06365_consen 118 LGAGYCC 124 (202)
T ss_pred HHHHHHh
Confidence 3333443
No 191
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=22.39 E-value=1.6e+02 Score=34.11 Aligned_cols=10 Identities=50% Similarity=1.544 Sum_probs=4.9
Q ss_pred CCCCCCCCcccc
Q 016298 22 CDPNCPFNYNCV 33 (392)
Q Consensus 22 c~~~c~~~~~cy 33 (392)
||+.|. +-|-
T Consensus 596 Ch~nCt--h~c~ 605 (1177)
T KOG1025|consen 596 CHPNCT--HGCL 605 (1177)
T ss_pred CCCccc--cccc
Confidence 445555 4444
No 192
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=22.32 E-value=83 Score=32.27 Aligned_cols=27 Identities=30% Similarity=0.328 Sum_probs=18.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Q 016298 52 SNSTPPYVIIFVALVLSFILFLAFYVI 78 (392)
Q Consensus 52 ~~~fs~~vIiii~Il~~~~llv~~~~i 78 (392)
...||++||++++|-+++-++++++--
T Consensus 312 ~d~~S~lvi~i~~vgLG~P~l~li~Gg 338 (350)
T PF15065_consen 312 VDSFSPLVIMIMAVGLGVPLLLLILGG 338 (350)
T ss_pred ccchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 356899999888877777666554433
No 193
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.20 E-value=32 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=6.2
Q ss_pred CCCcccccccCC
Q 016298 185 NCPMCRAHIVHE 196 (392)
Q Consensus 185 tCPlCR~~v~~~ 196 (392)
.||+|.+++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999888643
No 194
>PF10745 DUF2530: Protein of unknown function (DUF2530); InterPro: IPR019681 This entry represents proteins with unknown function found in mycobacteria and in other Actinobacteria.
Probab=21.88 E-value=58 Score=26.21 Aligned_cols=6 Identities=67% Similarity=1.580 Sum_probs=2.4
Q ss_pred CCCCCC
Q 016298 44 PPPPPS 49 (392)
Q Consensus 44 pp~~p~ 49 (392)
||+.|+
T Consensus 4 ~P~LP~ 9 (77)
T PF10745_consen 4 PPPLPP 9 (77)
T ss_pred CCCCCh
Confidence 334343
No 195
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.87 E-value=61 Score=20.72 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=10.3
Q ss_pred cccccccccccCCceeecCCCCCcCChhHH
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCI 176 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI 176 (392)
.|.+|......+-.-.-.. |.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~-Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSE-CDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TT-T-----HHHH
T ss_pred cCCcCCCcCCCCceEECcc-CCCccChhcC
Confidence 4788888876533344444 9999999985
No 196
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=21.56 E-value=37 Score=40.86 Aligned_cols=49 Identities=31% Similarity=0.612 Sum_probs=38.3
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~v 193 (392)
....|.+|+....+.+.+...- |.-.||.-|++.-+.. .-.||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4578999999987765555554 8899999999998764 34599998765
No 197
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=54 Score=32.95 Aligned_cols=50 Identities=22% Similarity=0.568 Sum_probs=40.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
..+.|-||...+....... .|.|.|+..|...|......||.|+....+-
T Consensus 104 ~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 4678999998886644332 4999999999999999999999998765443
No 198
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.21 E-value=1.1e+02 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=5.6
Q ss_pred CCCCCCCCCchH
Q 016298 48 PSHQSNSTPPYV 59 (392)
Q Consensus 48 p~~~~~~fs~~v 59 (392)
||++...|...+
T Consensus 45 p~~~~~~~~~~l 56 (204)
T PRK09174 45 PPFDSTHYASQL 56 (204)
T ss_pred CCCcchhccHHH
Confidence 445555444333
No 199
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.99 E-value=1.6e+02 Score=24.84 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 56 PPYVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i~~r 81 (392)
.+++|.++++++++=|++.++++.++
T Consensus 19 eIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 19 EIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555433
No 200
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.94 E-value=49 Score=22.44 Aligned_cols=25 Identities=40% Similarity=0.961 Sum_probs=15.3
Q ss_pred cccccccccccCC--------ceeecCCCCCcCC
Q 016298 147 ECSVCLNEFQEDE--------TVRLLPKCNHAFH 172 (392)
Q Consensus 147 ~C~ICle~~~~~~--------~vr~lp~C~H~FH 172 (392)
.|+-|...|..++ .++- ++|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC-~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRC-PKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEEC-CCCCcEee
Confidence 5788887776544 2333 24777775
No 201
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.89 E-value=1.2e+02 Score=34.27 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 016298 61 IFVALVLSF 69 (392)
Q Consensus 61 iii~Il~~~ 69 (392)
++++||.++
T Consensus 274 fLl~ILG~~ 282 (807)
T PF10577_consen 274 FLLAILGGT 282 (807)
T ss_pred HHHHHHHHH
Confidence 344444433
No 202
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=20.80 E-value=1e+02 Score=31.97 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 58 YVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 58 ~vIiii~Il~~~~llv~~~~i~~r 81 (392)
+++.+++.++.++++++++.++.+
T Consensus 285 ~~vtl~iPl~i~llL~llLs~Imc 308 (386)
T PF05510_consen 285 FLVTLAIPLIIALLLLLLLSYIMC 308 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 333333334444444444444444
No 203
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.63 E-value=1.2e+02 Score=25.59 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=28.2
Q ss_pred CCcccccccccccCCceee-----cCCC---CCcCChhHHHHHHhc---------CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRL-----LPKC---NHAFHISCIDTWLSS---------HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~-----lp~C---~H~FH~~CI~~Wl~~---------~~tCPlCR~ 191 (392)
+..|..|...-.+. ...- .+.| .=.|+..||..++.. +-.||.||.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 45677777643211 1111 1236 667999999998742 235999986
Done!