Query 016298
Match_columns 392
No_of_seqs 427 out of 1840
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.7E-16 9.2E-21 127.3 5.8 76 119-195 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.4E-16 4.9E-21 123.8 2.1 69 127-196 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 2.3E-14 7.8E-19 104.4 4.1 51 144-194 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.4 6.8E-14 2.3E-18 108.1 5.4 54 142-196 12-65 (74)
5 2ect_A Ring finger protein 126 99.4 8E-14 2.7E-18 108.7 5.5 56 143-199 13-68 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 105.7 5.3 53 143-196 12-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 1E-13 3.6E-18 109.8 3.1 53 144-196 14-77 (81)
8 1v87_A Deltex protein 2; ring- 99.4 4.1E-13 1.4E-17 112.1 5.3 56 144-200 24-99 (114)
9 2ecm_A Ring finger and CHY zin 99.3 4.9E-13 1.7E-17 97.1 4.3 50 144-194 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 1.4E-12 4.8E-17 98.6 4.1 52 143-195 13-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.7E-17 100.1 3.4 54 144-198 9-66 (71)
12 2d8s_A Cellular modulator of i 99.3 2.1E-12 7.3E-17 102.5 5.1 56 144-201 14-76 (80)
13 3dpl_R Ring-box protein 1; ubi 99.3 1.3E-12 4.5E-17 109.1 3.8 51 144-195 36-101 (106)
14 2xeu_A Ring finger protein 4; 99.2 1.9E-12 6.5E-17 96.4 2.5 53 144-197 2-58 (64)
15 2djb_A Polycomb group ring fin 99.2 1E-11 3.4E-16 95.6 5.8 55 141-198 11-65 (72)
16 2ecn_A Ring finger protein 141 99.2 3.6E-12 1.2E-16 97.3 2.4 51 142-197 12-62 (70)
17 2ct2_A Tripartite motif protei 99.2 2E-11 6.8E-16 96.7 6.8 55 142-197 12-70 (88)
18 1chc_A Equine herpes virus-1 r 99.2 1.1E-11 3.9E-16 93.8 5.0 49 144-195 4-52 (68)
19 2d8t_A Dactylidin, ring finger 99.2 3.4E-12 1.2E-16 98.0 1.7 52 143-198 13-64 (71)
20 4a0k_B E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 108.6 0.2 51 144-195 47-112 (117)
21 2yur_A Retinoblastoma-binding 99.1 5.6E-11 1.9E-15 92.0 5.5 52 142-196 12-65 (74)
22 2ysl_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 91.2 4.8 52 142-197 17-71 (73)
23 2ecy_A TNF receptor-associated 99.1 5.3E-11 1.8E-15 89.9 4.7 50 143-196 13-63 (66)
24 2csy_A Zinc finger protein 183 99.1 4.7E-11 1.6E-15 93.7 4.3 47 144-194 14-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 104.8 2.2 49 144-196 52-100 (138)
26 2ct0_A Non-SMC element 1 homol 99.1 1.1E-10 3.8E-15 91.4 5.2 51 144-197 14-66 (74)
27 2ecv_A Tripartite motif-contai 99.1 1.6E-10 5.6E-15 90.3 6.0 52 142-197 16-73 (85)
28 2ecw_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 90.5 5.3 52 142-197 16-73 (85)
29 1t1h_A Gspef-atpub14, armadill 99.0 1.2E-10 4E-15 90.6 4.2 50 143-196 6-56 (78)
30 2egp_A Tripartite motif-contai 99.0 5.6E-11 1.9E-15 92.3 1.9 52 142-197 9-67 (79)
31 4ap4_A E3 ubiquitin ligase RNF 99.0 8.3E-11 2.9E-15 99.4 2.7 53 144-197 6-62 (133)
32 3lrq_A E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 96.2 2.7 51 144-197 21-72 (100)
33 2ysj_A Tripartite motif-contai 99.0 3.3E-10 1.1E-14 84.6 4.7 44 142-189 17-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.0 1.7E-10 5.7E-15 93.9 2.4 50 144-196 21-70 (99)
35 2ecj_A Tripartite motif-contai 98.9 4.8E-10 1.6E-14 81.9 4.1 43 143-189 13-58 (58)
36 1g25_A CDK-activating kinase a 98.9 3.7E-10 1.3E-14 84.9 3.4 54 144-198 2-58 (65)
37 3ztg_A E3 ubiquitin-protein li 98.9 5.8E-10 2E-14 89.3 4.4 51 141-194 9-61 (92)
38 2ckl_A Polycomb group ring fin 98.9 4.5E-10 1.5E-14 92.9 3.7 50 144-196 14-63 (108)
39 3fl2_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 95.1 3.8 48 144-195 51-99 (124)
40 4ap4_A E3 ubiquitin ligase RNF 98.9 3.8E-10 1.3E-14 95.3 2.7 53 144-197 71-127 (133)
41 1jm7_A BRCA1, breast cancer ty 98.9 1E-09 3.4E-14 90.7 5.0 49 144-196 20-71 (112)
42 2ckl_B Ubiquitin ligase protei 98.9 1.2E-09 4.2E-14 96.9 4.9 49 144-195 53-102 (165)
43 1e4u_A Transcriptional repress 98.8 5.9E-09 2E-13 82.2 6.5 56 142-198 8-65 (78)
44 3hct_A TNF receptor-associated 98.8 1.3E-09 4.5E-14 91.6 2.9 51 142-196 15-66 (118)
45 1rmd_A RAG1; V(D)J recombinati 98.8 1.7E-09 5.8E-14 90.4 3.1 50 144-197 22-72 (116)
46 1z6u_A NP95-like ring finger p 98.8 2.8E-09 9.5E-14 93.9 4.3 49 144-196 77-126 (150)
47 3l11_A E3 ubiquitin-protein li 98.8 6.6E-10 2.3E-14 92.8 -0.0 48 144-195 14-62 (115)
48 1bor_A Transcription factor PM 98.8 1.7E-09 5.8E-14 79.5 2.1 47 144-197 5-51 (56)
49 2vje_A E3 ubiquitin-protein li 98.7 3.4E-09 1.1E-13 80.1 2.9 47 144-194 7-56 (64)
50 2kr4_A Ubiquitin conjugation f 98.7 6E-09 2E-13 83.1 3.9 50 144-197 13-62 (85)
51 2kre_A Ubiquitin conjugation f 98.7 8E-09 2.7E-13 85.1 3.8 51 144-198 28-78 (100)
52 1jm7_B BARD1, BRCA1-associated 98.7 5E-09 1.7E-13 87.9 2.3 47 144-196 21-68 (117)
53 1wgm_A Ubiquitin conjugation f 98.7 1.1E-08 3.8E-13 83.9 4.0 51 144-198 21-72 (98)
54 2vje_B MDM4 protein; proto-onc 98.7 8.3E-09 2.8E-13 77.7 2.8 49 144-194 6-55 (63)
55 2y1n_A E3 ubiquitin-protein li 98.7 1.2E-08 3.9E-13 102.8 4.4 48 145-196 332-380 (389)
56 3knv_A TNF receptor-associated 98.6 8E-09 2.8E-13 90.0 1.8 50 143-196 29-79 (141)
57 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.1E-08 3.8E-13 100.9 2.9 53 144-196 307-374 (381)
58 4ic3_A E3 ubiquitin-protein li 98.6 9.1E-09 3.1E-13 79.8 1.4 44 144-195 23-67 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.5 6.4E-08 2.2E-12 72.5 4.2 48 144-195 5-59 (60)
60 2yu4_A E3 SUMO-protein ligase 98.5 3.5E-08 1.2E-12 80.0 2.3 52 142-196 4-64 (94)
61 3hcs_A TNF receptor-associated 98.5 5.5E-08 1.9E-12 86.5 2.7 51 142-196 15-66 (170)
62 2c2l_A CHIP, carboxy terminus 98.4 7.5E-08 2.6E-12 90.9 3.4 50 144-197 207-257 (281)
63 2ea5_A Cell growth regulator w 98.4 3.2E-07 1.1E-11 70.1 4.7 45 144-196 14-59 (68)
64 2ecg_A Baculoviral IAP repeat- 98.4 1.6E-07 5.4E-12 72.8 2.9 43 145-195 25-68 (75)
65 1wim_A KIAA0161 protein; ring 98.3 1.7E-07 6E-12 75.4 2.7 48 144-192 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.3 1.4E-07 4.7E-12 74.2 0.9 45 144-196 17-62 (79)
67 2f42_A STIP1 homology and U-bo 98.2 4.8E-07 1.6E-11 82.1 3.8 53 141-197 102-155 (179)
68 2bay_A PRE-mRNA splicing facto 98.1 1.2E-06 4E-11 65.7 1.9 49 146-198 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.0 8.8E-07 3E-11 88.0 1.3 44 144-195 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 1.4E-06 4.7E-11 83.3 1.7 52 144-198 180-235 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.5E-05 5E-10 65.4 2.9 46 147-195 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 6.7E-05 2.3E-09 70.8 4.8 50 145-197 180-231 (238)
73 2ko5_A Ring finger protein Z; 92.7 0.12 4.1E-06 41.8 4.4 50 142-197 25-75 (99)
74 2lri_C Autoimmune regulator; Z 92.3 0.099 3.4E-06 39.4 3.3 46 144-193 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.078 2.7E-06 42.3 2.2 35 144-179 2-36 (101)
76 2k1a_A Integrin alpha-IIB; sin 90.7 0.61 2.1E-05 32.1 5.6 33 56-88 8-40 (42)
77 2knc_A Integrin alpha-IIB; tra 90.6 0.24 8.1E-06 36.0 3.7 34 56-89 10-43 (54)
78 2l8s_A Integrin alpha-1; trans 90.5 0.24 8.3E-06 35.9 3.6 33 57-89 8-40 (54)
79 1wil_A KIAA1045 protein; ring 84.4 0.97 3.3E-05 35.8 4.0 35 143-179 13-47 (89)
80 2l5u_A Chromodomain-helicase-D 80.6 0.73 2.5E-05 33.8 1.9 44 144-191 10-57 (61)
81 1mm2_A MI2-beta; PHD, zinc fin 78.8 0.54 1.9E-05 34.5 0.7 45 144-192 8-56 (61)
82 1f62_A Transcription factor WS 78.4 0.86 2.9E-05 31.9 1.6 44 147-191 2-49 (51)
83 2ks1_B Epidermal growth factor 78.4 5.6 0.00019 27.5 5.7 12 61-72 17-28 (44)
84 3o36_A Transcription intermedi 77.9 0.49 1.7E-05 42.1 0.3 45 144-192 3-51 (184)
85 3u5n_A E3 ubiquitin-protein li 77.8 0.52 1.8E-05 42.8 0.4 45 144-192 6-54 (207)
86 2k16_A Transcription initiatio 77.6 0.43 1.5E-05 36.2 -0.1 50 144-194 17-70 (75)
87 1we9_A PHD finger family prote 77.3 0.49 1.7E-05 34.8 0.1 47 144-191 5-57 (64)
88 2yql_A PHD finger protein 21A; 76.8 0.37 1.3E-05 34.7 -0.7 44 144-191 8-55 (56)
89 2ysm_A Myeloid/lymphoid or mix 74.6 1 3.5E-05 36.7 1.3 46 144-190 6-55 (111)
90 2klu_A T-cell surface glycopro 73.7 5 0.00017 30.2 4.7 21 61-81 12-33 (70)
91 3lqh_A Histone-lysine N-methyl 73.2 1.1 3.8E-05 40.2 1.3 47 145-192 2-63 (183)
92 2puy_A PHD finger protein 21A; 69.2 0.5 1.7E-05 34.5 -1.6 46 144-193 4-53 (60)
93 1xwh_A Autoimmune regulator; P 67.6 1.3 4.3E-05 33.0 0.3 45 144-192 7-55 (66)
94 1fp0_A KAP-1 corepressor; PHD 67.5 3 0.0001 33.1 2.5 45 144-192 24-72 (88)
95 2e6r_A Jumonji/ARID domain-con 66.8 0.78 2.7E-05 36.6 -1.1 48 144-192 15-66 (92)
96 3v43_A Histone acetyltransfera 66.5 1.5 5.3E-05 35.9 0.7 45 147-191 63-111 (112)
97 2ro1_A Transcription intermedi 65.5 1.7 5.7E-05 39.0 0.8 44 145-192 2-49 (189)
98 2lv9_A Histone-lysine N-methyl 64.8 2 6.9E-05 34.4 1.1 45 145-191 28-75 (98)
99 2l43_A N-teminal domain from h 64.1 2.1 7E-05 33.8 0.9 52 144-195 24-78 (88)
100 3m62_A Ubiquitin conjugation f 62.6 3.3 0.00011 45.9 2.5 52 144-199 890-942 (968)
101 2e6s_A E3 ubiquitin-protein li 62.3 1.4 4.6E-05 34.1 -0.4 46 145-191 26-76 (77)
102 2ku3_A Bromodomain-containing 59.3 2.6 8.8E-05 32.0 0.7 49 143-191 14-65 (71)
103 4gne_A Histone-lysine N-methyl 58.6 6.2 0.00021 32.3 2.9 50 142-196 12-66 (107)
104 3asl_A E3 ubiquitin-protein li 58.4 1.5 5E-05 33.2 -0.8 44 147-191 20-68 (70)
105 2lbm_A Transcriptional regulat 57.3 8 0.00028 33.3 3.6 44 144-191 62-116 (142)
106 3ask_A E3 ubiquitin-protein li 56.0 2.6 8.9E-05 39.1 0.3 45 146-191 175-224 (226)
107 3v43_A Histone acetyltransfera 55.0 14 0.00048 30.0 4.6 46 144-190 4-62 (112)
108 1weu_A Inhibitor of growth fam 54.0 6.7 0.00023 31.2 2.3 44 144-192 35-85 (91)
109 2vpb_A Hpygo1, pygopus homolog 52.9 7.6 0.00026 28.8 2.4 34 144-177 7-41 (65)
110 2cs3_A Protein C14ORF4, MY039 52.9 7.2 0.00025 30.6 2.2 38 145-182 15-52 (93)
111 1wep_A PHF8; structural genomi 52.4 15 0.0005 28.0 4.0 48 144-193 11-64 (79)
112 3shb_A E3 ubiquitin-protein li 52.3 1.9 6.6E-05 33.2 -1.1 44 147-191 28-76 (77)
113 2jwa_A Receptor tyrosine-prote 51.5 23 0.00077 24.5 4.4 7 60-66 16-22 (44)
114 2kgg_A Histone demethylase jar 50.9 4.7 0.00016 28.3 0.9 45 146-190 3-52 (52)
115 2ri7_A Nucleosome-remodeling f 50.6 3.1 0.00011 36.3 -0.2 48 144-192 7-59 (174)
116 1wev_A Riken cDNA 1110020M19; 50.4 3 0.0001 32.8 -0.3 52 144-195 15-75 (88)
117 1weo_A Cellulose synthase, cat 46.5 78 0.0027 25.1 7.3 52 144-196 15-71 (93)
118 1wem_A Death associated transc 46.4 6.5 0.00022 29.7 1.1 47 145-193 16-71 (76)
119 3o70_A PHD finger protein 13; 44.6 4 0.00014 30.6 -0.4 47 143-191 17-66 (68)
120 2yt5_A Metal-response element- 44.6 8 0.00027 28.2 1.3 49 144-192 5-61 (66)
121 1wen_A Inhibitor of growth fam 43.7 10 0.00035 28.5 1.8 44 144-192 15-65 (71)
122 2k9y_A Ephrin type-A receptor 43.2 33 0.0011 22.5 4.2 14 60-73 14-27 (41)
123 3ql9_A Transcriptional regulat 42.9 20 0.00069 30.3 3.7 44 144-191 56-110 (129)
124 2xb1_A Pygopus homolog 2, B-ce 42.5 9.8 0.00033 30.8 1.7 47 146-192 4-61 (105)
125 2kwj_A Zinc finger protein DPF 42.0 16 0.00056 29.7 3.0 33 146-179 2-41 (114)
126 1z60_A TFIIH basal transcripti 39.7 13 0.00044 27.3 1.7 43 146-189 16-58 (59)
127 2rsd_A E3 SUMO-protein ligase 38.9 2.8 9.6E-05 31.2 -2.0 45 146-191 11-64 (68)
128 2yw8_A RUN and FYVE domain-con 38.2 21 0.00073 27.3 2.9 35 144-178 18-52 (82)
129 1wew_A DNA-binding family prot 37.8 6.7 0.00023 29.9 -0.1 48 145-193 16-73 (78)
130 3t7l_A Zinc finger FYVE domain 37.4 25 0.00085 27.5 3.2 37 144-180 19-55 (90)
131 2ysm_A Myeloid/lymphoid or mix 37.3 4.2 0.00014 32.9 -1.4 45 147-192 56-104 (111)
132 1joc_A EEA1, early endosomal a 35.4 26 0.00089 29.1 3.2 35 144-178 68-102 (125)
133 1vfy_A Phosphatidylinositol-3- 35.3 25 0.00085 26.3 2.8 34 145-178 11-44 (73)
134 3i2d_A E3 SUMO-protein ligase 34.6 24 0.0008 35.0 3.3 48 146-197 250-302 (371)
135 2kwj_A Zinc finger protein DPF 34.2 3.4 0.00012 33.9 -2.4 47 146-193 59-109 (114)
136 1z2q_A LM5-1; membrane protein 34.1 30 0.001 26.5 3.2 36 144-179 20-55 (84)
137 4fo9_A E3 SUMO-protein ligase 33.6 23 0.00079 35.0 3.0 49 145-197 215-268 (360)
138 1wfk_A Zinc finger, FYVE domai 33.3 24 0.00081 27.6 2.5 51 144-194 8-65 (88)
139 1dvp_A HRS, hepatocyte growth 32.5 21 0.00071 32.3 2.3 35 144-178 160-194 (220)
140 2l2t_A Receptor tyrosine-prote 31.6 57 0.002 22.4 3.9 21 61-81 12-32 (44)
141 3zyq_A Hepatocyte growth facto 30.8 23 0.00079 32.3 2.4 36 144-179 163-198 (226)
142 2knc_B Integrin beta-3; transm 30.5 58 0.002 25.0 4.2 14 60-73 12-25 (79)
143 1y02_A CARP2, FYVE-ring finger 30.3 7.2 0.00025 32.6 -1.1 48 145-192 19-66 (120)
144 2vnf_A ING 4, P29ING4, inhibit 29.5 8.1 0.00028 28.0 -0.8 42 145-191 10-58 (60)
145 1x4u_A Zinc finger, FYVE domai 29.5 38 0.0013 25.9 3.1 34 144-177 13-46 (84)
146 1zfo_A LAsp-1; LIM domain, zin 28.3 28 0.00097 21.6 1.8 29 145-176 3-31 (31)
147 1zbd_B Rabphilin-3A; G protein 28.1 25 0.00086 29.7 1.9 34 144-177 54-88 (134)
148 3j1r_A Archaeal adhesion filam 27.0 90 0.0031 19.0 3.7 22 56-77 2-23 (26)
149 3c6w_A P28ING5, inhibitor of g 26.0 10 0.00036 27.4 -0.7 42 145-191 9-57 (59)
150 2g6q_A Inhibitor of growth pro 25.2 11 0.00038 27.6 -0.7 42 145-191 11-59 (62)
151 2k1k_A Ephrin type-A receptor 25.2 94 0.0032 20.5 4.0 18 61-78 16-33 (38)
152 1x4l_A Skeletal muscle LIM-pro 24.6 50 0.0017 23.7 2.9 41 145-195 5-47 (72)
153 1afo_A Glycophorin A; integral 24.3 1.1E+02 0.0039 20.5 4.1 24 58-81 12-35 (40)
154 2cu8_A Cysteine-rich protein 2 24.1 44 0.0015 24.4 2.5 41 145-196 9-49 (76)
155 2co8_A NEDD9 interacting prote 24.1 78 0.0027 23.5 4.0 42 144-196 14-55 (82)
156 3f6q_B LIM and senescent cell 24.0 28 0.00097 24.8 1.3 42 145-196 11-52 (72)
157 1wyh_A SLIM 2, skeletal muscle 23.5 66 0.0023 22.9 3.3 42 145-196 5-46 (72)
158 2o35_A Hypothetical protein DU 23.4 31 0.0011 28.0 1.5 12 170-181 42-53 (105)
159 3fyb_A Protein of unknown func 23.3 31 0.0011 27.9 1.5 12 170-181 41-52 (104)
160 2jmi_A Protein YNG1, ING1 homo 22.8 18 0.00062 28.6 0.0 43 144-191 25-75 (90)
161 3mpx_A FYVE, rhogef and PH dom 22.5 18 0.00062 35.5 0.0 37 144-180 374-410 (434)
162 1x61_A Thyroid receptor intera 22.1 83 0.0028 22.4 3.7 40 145-194 5-44 (72)
163 3o7a_A PHD finger protein 13 v 20.7 14 0.00048 25.8 -0.9 41 150-191 8-51 (52)
164 1g47_A Pinch protein; LIM doma 20.7 75 0.0026 22.9 3.2 43 144-196 10-52 (77)
165 2dj7_A Actin-binding LIM prote 20.3 62 0.0021 24.1 2.6 39 145-194 15-53 (80)
166 2d8v_A Zinc finger FYVE domain 20.2 69 0.0023 24.0 2.7 31 144-179 7-38 (67)
167 2jmv_A Scytovirin; protein, su 20.0 71 0.0024 24.8 2.8 16 20-35 24-41 (95)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=127.27 Aligned_cols=76 Identities=24% Similarity=0.612 Sum_probs=67.5
Q ss_pred hccCCCHHHHhhcceeEecCCCC-cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 119 HTVGLQQSVINSITVCRYKKGEG-LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 119 ~~~gl~~~~i~~lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
...|++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|++.+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45799999999999999887543 345678999999999999999999 99999999999999999999999998854
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-16 Score=123.84 Aligned_cols=69 Identities=35% Similarity=0.832 Sum_probs=61.2
Q ss_pred HHhhcceeEecCCCCcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 127 VINSITVCRYKKGEGLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 127 ~i~~lp~~~~~~~~~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
.++.||.++++......+...|+||++.|..++.++.+| |+|.||..||..|++.+.+||+||+.+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356788888887766667889999999999999999999 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2.3e-14 Score=104.38 Aligned_cols=51 Identities=51% Similarity=1.285 Sum_probs=46.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467999999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.8e-14 Score=108.05 Aligned_cols=54 Identities=33% Similarity=0.864 Sum_probs=48.8
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
..++..|+||++.|..++.++++| |+|.||..||.+|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345679999999999988899999 999999999999999999999999998654
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=8e-14 Score=108.75 Aligned_cols=56 Identities=45% Similarity=0.980 Sum_probs=50.1
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETVT 199 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 199 (392)
.+...|+||++.|..++.++.++ |+|.||..||.+|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 35689999999999888888999 999999999999999999999999998776443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=105.67 Aligned_cols=53 Identities=42% Similarity=0.988 Sum_probs=48.1
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
.....|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34678999999998888899999 999999999999999999999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1e-13 Score=109.77 Aligned_cols=53 Identities=28% Similarity=0.831 Sum_probs=43.5
Q ss_pred cCCccccccccccc-----------CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQE-----------DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~-----------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+++.|+||+++|.. ++.++.++.|+|.||..||++||+.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46778888888854 444666656999999999999999999999999987643
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=4.1e-13 Score=112.08 Aligned_cols=56 Identities=27% Similarity=0.663 Sum_probs=44.8
Q ss_pred cCCcccccccccccCC---------------ceeecCCCCCcCChhHHHHHHh-----cCCCCCcccccccCCCCCC
Q 016298 144 EGTECSVCLNEFQEDE---------------TVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRAHIVHETVTA 200 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~v~~~~~~~ 200 (392)
.+..|+||++.|..+. .+++++ |+|.||..||..|+. .+.+||+||+.+.......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence 3568999999997643 344777 999999999999994 5678999999987664433
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=4.9e-13 Score=97.15 Aligned_cols=50 Identities=26% Similarity=0.785 Sum_probs=43.7
Q ss_pred cCCcccccccccccC-CceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQED-ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
....|+||++.|..+ +.++.++ |+|.||..||.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999999654 4577888 9999999999999999999999998864
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=98.63 Aligned_cols=52 Identities=27% Similarity=0.680 Sum_probs=44.5
Q ss_pred ccCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 143 IEGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
.+...|+||++.|.+. ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3567999999999763 3457788 99999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.29 E-value=1.1e-12 Score=100.07 Aligned_cols=54 Identities=26% Similarity=0.665 Sum_probs=46.2
Q ss_pred cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
++..|+||++.|.+. +.++.++ |||.||..||.+|++.+.+||+||..+.....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 467899999998763 4557788 99999999999999999999999999876543
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=102.54 Aligned_cols=56 Identities=25% Similarity=0.702 Sum_probs=46.9
Q ss_pred cCCcccccccccccCCceeecCCCC-----CcCChhHHHHHHhcC--CCCCcccccccCCCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN-----HAFHISCIDTWLSSH--INCPMCRAHIVHETVTAP 201 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~~~~~ 201 (392)
++..|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||..+.......|
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 467999999999877766 688 96 999999999999865 489999999987655444
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.3e-12 Score=109.11 Aligned_cols=51 Identities=33% Similarity=0.677 Sum_probs=43.7
Q ss_pred cCCcccccccccccCC---------------ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDE---------------TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~---------------~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
+++.|+||++.|...- .++.++ |+|.||..||++||..+.+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 4689999999998541 356677 99999999999999999999999998643
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.24 E-value=1.9e-12 Score=96.45 Aligned_cols=53 Identities=26% Similarity=0.674 Sum_probs=45.2
Q ss_pred cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
++..|+||++.|... +.+..++ |||.||..||.+|++.+.+||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 356899999999753 4457787 9999999999999999999999999987653
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=95.58 Aligned_cols=55 Identities=24% Similarity=0.473 Sum_probs=45.4
Q ss_pred CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
...+...|+||++.|.+ .+.+++ |+|.||..||..|++.+.+||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 34456799999999976 344447 99999999999999999999999999876543
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.6e-12 Score=97.26 Aligned_cols=51 Identities=37% Similarity=0.995 Sum_probs=44.3
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.+.+ ..+| |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456899999999876 6678 9999999999999999999999999987543
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=96.66 Aligned_cols=55 Identities=31% Similarity=0.758 Sum_probs=46.6
Q ss_pred cccCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHhcC---CCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLSSH---INCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.|...+. .+.++ |||.||..||..|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3456799999999987664 77888 99999999999999876 78999999886653
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=1.1e-11 Score=93.81 Aligned_cols=49 Identities=31% Similarity=0.847 Sum_probs=42.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
.+..|+||++.+.+ .++.+| |+|.||..||..|++.+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46789999999864 357788 99999999999999999999999998853
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=3.4e-12 Score=98.00 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=44.4
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
.+...|+||++.|.+ ...++ |+|.||..||..|+..+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 346789999999865 46678 99999999999999999999999999876543
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.16 E-value=3.3e-12 Score=108.57 Aligned_cols=51 Identities=35% Similarity=0.720 Sum_probs=1.1
Q ss_pred cCCcccccccccccC-------------C--ceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQED-------------E--TVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~-------------~--~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
+++.|+||+++|... + .+..++ |+|.||..||.+||+.+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 468999999999752 1 233356 99999999999999999999999998754
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=5.6e-11 Score=92.04 Aligned_cols=52 Identities=23% Similarity=0.580 Sum_probs=42.3
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~ 196 (392)
..+...|+||++.|.+ ...++.|+|.||..||..|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3456799999999976 34466699999999999999866 6899999976543
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=91.23 Aligned_cols=52 Identities=27% Similarity=0.722 Sum_probs=42.8
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.|.+ ...++ |||.||..||..|++ ....||+||..+....
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456799999999875 55677 999999999999997 4568999999986543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.3e-11 Score=89.86 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=41.6
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~ 196 (392)
.+...|+||++.+.+. ..++ |||.||..||..|+. ...+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567899999999764 3367 999999999999994 567899999998654
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.7e-11 Score=93.74 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=41.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
....|+||++.|.+ ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45789999999965 45688 9999999999999999999999999985
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=2.8e-11 Score=104.79 Aligned_cols=49 Identities=35% Similarity=0.890 Sum_probs=42.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
++..|+||++.|.+ .+.+| |||.||..||..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34689999999965 56788 999999999999999999999999988543
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=91.35 Aligned_cols=51 Identities=22% Similarity=0.614 Sum_probs=42.6
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~ 197 (392)
...+|+||++.|..++.. . .|+|.||..||.+||+.+ .+||+||..+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~-~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--S-SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCcc--C-CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 357999999999876433 3 499999999999999987 78999999887554
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-10 Score=90.35 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=43.7
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc------CCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS------HINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.|.+ ...++ |+|.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 3356799999999975 45578 9999999999999987 778999999987654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=1.5e-10 Score=90.54 Aligned_cols=52 Identities=33% Similarity=0.674 Sum_probs=43.4
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc------CCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS------HINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.|... ..++ |+|.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 33567999999999763 4678 9999999999999987 668999999987543
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.04 E-value=1.2e-10 Score=90.64 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=42.9
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~ 196 (392)
.+...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 457899999999975 45578 9999999999999987 77899999988654
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=5.6e-11 Score=92.32 Aligned_cols=52 Identities=27% Similarity=0.598 Sum_probs=43.3
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-------CCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-------HINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~v~~~~ 197 (392)
..+...|+||++.|.+ .+.++ |||.||..||..|+.. ...||+||..+....
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 3456899999999976 44578 9999999999999986 567999999987643
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=8.3e-11 Score=99.36 Aligned_cols=53 Identities=26% Similarity=0.684 Sum_probs=45.5
Q ss_pred cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+. +.++.++ |||.||..||.+|++.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 467899999999763 4457788 9999999999999999999999999986543
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=9.1e-11 Score=96.17 Aligned_cols=51 Identities=27% Similarity=0.708 Sum_probs=42.6
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+ .+..++ |||.||..||..|+... .+||+||..+....
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 46789999999975 233377 99999999999999987 68999999986543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.3e-10 Score=84.60 Aligned_cols=44 Identities=32% Similarity=0.805 Sum_probs=36.9
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcc
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMC 189 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlC 189 (392)
..++..|+||++.|.+ .+.++ |||.||..||..|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999999975 45567 999999999999998 45579998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.7e-10 Score=93.95 Aligned_cols=50 Identities=24% Similarity=0.678 Sum_probs=42.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+...|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 35789999999975 233347 999999999999999999999999988653
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.8e-10 Score=81.86 Aligned_cols=43 Identities=35% Similarity=0.932 Sum_probs=36.0
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcc
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMC 189 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlC 189 (392)
.+...|+||++.|.+. +.++ |+|.||..||..|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567999999999763 4578 999999999999954 56789998
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3.7e-10 Score=84.92 Aligned_cols=54 Identities=20% Similarity=0.537 Sum_probs=42.4
Q ss_pred cCCccccccc-ccccCCce-eecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCCC
Q 016298 144 EGTECSVCLN-EFQEDETV-RLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle-~~~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~ 198 (392)
++..|+||++ .|...... ..++ |||.||..||.+|+.. ...||+||..+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3568999999 77665433 4567 9999999999999765 4679999999876543
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.93 E-value=5.8e-10 Score=89.33 Aligned_cols=51 Identities=24% Similarity=0.586 Sum_probs=41.4
Q ss_pred CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCccccccc
Q 016298 141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPMCRAHIV 194 (392)
Q Consensus 141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~v~ 194 (392)
...+...|+||++.|.+ .+.+|.|||.||..||..|+... .+||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34456899999999975 34566599999999999999754 58999999873
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.92 E-value=4.5e-10 Score=92.93 Aligned_cols=50 Identities=24% Similarity=0.668 Sum_probs=42.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+...|+||++.|.+ .+.+++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46799999999975 344447 999999999999999999999999988653
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.92 E-value=4.7e-10 Score=95.06 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=41.2
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~ 195 (392)
+...|+||++.|.+ ...+| |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45789999999975 55678 999999999999998555 89999999865
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=3.8e-10 Score=95.26 Aligned_cols=53 Identities=26% Similarity=0.684 Sum_probs=44.8
Q ss_pred cCCcccccccccccC----CceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQED----ETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|... ..++.++ |||.||..||++|++.+.+||+||..+....
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 467899999998753 3346777 9999999999999999999999999987553
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=1e-09 Score=90.73 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=40.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC---CCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI---NCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~v~~~ 196 (392)
+...|+||++.|.+ ...++ |||.||..||..|+..+. +||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 35689999999975 34477 999999999999998654 899999988654
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.87 E-value=1.2e-09 Score=96.90 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=41.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~ 195 (392)
+...|+||++.|.+ .+.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999975 344457 9999999999999997 7789999999854
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=5.9e-09 Score=82.15 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=42.8
Q ss_pred cccCCcccccccccccCCc-eeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCCCC
Q 016298 142 LIEGTECSVCLNEFQEDET-VRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHETV 198 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~-vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~ 198 (392)
+.++.+|+||++.+...+. +..++ |||.||..||..|+. ....||+||..+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3456799999999865432 33345 999999999999875 45679999999876543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=1.3e-09 Score=91.65 Aligned_cols=51 Identities=27% Similarity=0.595 Sum_probs=42.9
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 196 (392)
..+...|+||++.|.+ ...++ |||.||..||..|+.... +||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3456799999999975 45578 999999999999998765 899999998654
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.80 E-value=1.7e-09 Score=90.43 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=42.4
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+ ...++ |||.||..||..|+.. ..+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 35789999999965 45578 9999999999999987 778999999987654
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=2.8e-09 Score=93.88 Aligned_cols=49 Identities=18% Similarity=0.523 Sum_probs=42.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 196 (392)
+...|+||++.|.+ ...+| |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45789999999975 45578 999999999999998765 799999998765
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=6.6e-10 Score=92.81 Aligned_cols=48 Identities=27% Similarity=0.783 Sum_probs=41.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-CCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-HINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~v~~ 195 (392)
++..|+||++.|.. .+.++ |||.||..||..|+.. ..+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46789999999975 45668 9999999999999976 6689999998864
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.7e-09 Score=79.46 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=39.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+ .+.+| |+|.||..||..| ...||+||..+..+.
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 46789999999976 46788 9999999999884 667999999886543
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.75 E-value=3.4e-09 Score=80.15 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=40.1
Q ss_pred cCCcccccccccccCCceeec--CCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLL--PKCNHA-FHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~l--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
++..|.||++.+.+ ...+ | |||. |+..|+..|+..+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 46789999998755 3444 9 9999 899999999998899999999874
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.73 E-value=6e-09 Score=83.13 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=44.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||..+....
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 46799999999976 66788 9999999999999999999999999886543
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.69 E-value=8e-09 Score=85.06 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=44.6
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
+...|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++.....
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 46799999999976 56788 99999999999999988999999999876543
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=5e-09 Score=87.94 Aligned_cols=47 Identities=28% Similarity=0.629 Sum_probs=40.0
Q ss_pred cCCcccccccccccCCceeec-CCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 46799999999975 3455 7 999999999999998 7899999998544
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.67 E-value=1.1e-08 Score=83.88 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=44.4
Q ss_pred cCCcccccccccccCCceeecCCCC-CcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN-HAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
++..|+||++.|.+ .++++ || |.|+..||..||..+.+||+||.++.....
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 46789999999976 56688 99 999999999999988999999999876543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=8.3e-09 Score=77.72 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=39.8
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
....|.||++...+. .+..+| |||. |+..|+..|.+....||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 467899999986542 122348 9998 999999999988889999999874
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.65 E-value=1.2e-08 Score=102.76 Aligned_cols=48 Identities=29% Similarity=0.800 Sum_probs=41.9
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~~ 196 (392)
...|+||++.+.+ ++.+| |||.||..||..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999854 67788 999999999999998 678899999988654
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.61 E-value=8e-09 Score=90.05 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=41.6
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC-CCCcccccccCC
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI-NCPMCRAHIVHE 196 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~v~~~ 196 (392)
.+...|+||++.|.+. ..++ |||.||..||..|+.... +||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 3467999999999763 4577 999999999999998665 899999987543
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.61 E-value=1.1e-08 Score=100.90 Aligned_cols=53 Identities=25% Similarity=0.640 Sum_probs=40.5
Q ss_pred cCCcccccccccccCCce----eecCCCCCcCChhHHHHHHhcC-----------CCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETV----RLLPKCNHAFHISCIDTWLSSH-----------INCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~v----r~lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~v~~~ 196 (392)
...+|+||++.+.++..+ -..+.|+|.||..||.+||++. .+||.||.++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 467999999999873322 1223599999999999999753 4699999988643
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.60 E-value=9.1e-09 Score=79.75 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=37.9
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 35689999998865 66788 9999 999999999 889999998754
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.52 E-value=6.4e-08 Score=72.49 Aligned_cols=48 Identities=25% Similarity=0.643 Sum_probs=37.6
Q ss_pred cCCcccccccccccCCceeecCCCC--C---cCChhHHHHHHhc--CCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN--H---AFHISCIDTWLSS--HINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~~ 195 (392)
+...|.||+++.. +.+ ++| |. | .||..||.+|+.. +.+||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4678999999842 333 588 66 4 9999999999974 5779999988753
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=3.5e-08 Score=79.97 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=40.8
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC------CCCCc--cccc-ccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH------INCPM--CRAH-IVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~-v~~~ 196 (392)
..+...|+||++.|.+ .++++.|||.|+..||..||..+ .+||+ |+.. +...
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3456789999999976 44553499999999999999864 48999 9876 5443
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=5.5e-08 Score=86.48 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=42.3
Q ss_pred cccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~ 196 (392)
..+...|+||++.|.+ .+.++ |||.||..||..|+... .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3456799999999976 35577 99999999999999864 4899999988654
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=7.5e-08 Score=90.87 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=42.3
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET 197 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~ 197 (392)
+...|+||++.|.+ .+++| |||.||..||..|+..+ .+||+||.++....
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 46789999999976 56788 99999999999999864 45999999886543
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=3.2e-07 Score=70.10 Aligned_cols=45 Identities=33% Similarity=0.801 Sum_probs=37.8
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
+...|.||++...+ +..+| |+|. |+..|+.. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 46789999998754 77899 9999 99999984 57899999988653
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.6e-07 Score=72.75 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=36.1
Q ss_pred CCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
...|+||++.+.+ +..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4689999999865 56788 9999 99999964 4789999998855
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.33 E-value=1.7e-07 Score=75.45 Aligned_cols=48 Identities=23% Similarity=0.727 Sum_probs=40.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc--------CCCCCc--cccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS--------HINCPM--CRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~ 192 (392)
+..+|+||++++...+.+.+.+ |+|.||.+||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998877777677 9999999999999863 136999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.28 E-value=1.4e-07 Score=74.21 Aligned_cols=45 Identities=33% Similarity=0.735 Sum_probs=37.8
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
++..|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 35689999998754 67789 9999 999999987 3899999988653
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.25 E-value=4.8e-07 Score=82.05 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=43.8
Q ss_pred CcccCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC-CCCCcccccccCCC
Q 016298 141 GLIEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH-INCPMCRAHIVHET 197 (392)
Q Consensus 141 ~~~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~ 197 (392)
...+...|+||++.|.+ .+++| |||.|+..||..|+..+ .+||+||.++....
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 33457899999999986 56678 99999999999999864 46999999886543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.06 E-value=1.2e-06 Score=65.70 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=42.2
Q ss_pred CcccccccccccCCceeec-CCCCCcCChhHHHHHHhcCCCCCcccccccCCCC
Q 016298 146 TECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLSSHINCPMCRAHIVHETV 198 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~ 198 (392)
..|+||++.|.+ ..++ + |||.|...||.+||+.+.+||+++.++.....
T Consensus 4 ~~CpIs~~~m~d---PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS---EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC---CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 579999999985 3555 6 99999999999999988899999999876554
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.05 E-value=8.8e-07 Score=87.99 Aligned_cols=44 Identities=32% Similarity=0.786 Sum_probs=37.9
Q ss_pred cCCcccccccccccCCceeecCCCCCc-CChhHHHHHHhcCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHA-FHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
++..|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999999865 66778 9999 999999998 789999998753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.4e-06 Score=83.30 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=41.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC--CCCCc--ccccccCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH--INCPM--CRAHIVHETV 198 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~v~~~~~ 198 (392)
....|+||++.|.+ .|+... |||.|+..||..|+..+ .+||+ ||..+.....
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 45689999999976 355456 99999999999999865 36999 9998765443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.71 E-value=1.5e-05 Score=65.38 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=38.2
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHh-cCCCCCcccccccC
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-SHINCPMCRAHIVH 195 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~v~~ 195 (392)
-|.+|--.+.. ..|+.| |+|+||.+|+..|.+ ..++||.|+.+|..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47888777654 588999 999999999999985 56789999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.51 E-value=6.7e-05 Score=70.75 Aligned_cols=50 Identities=22% Similarity=0.596 Sum_probs=40.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC--CCCcccccccCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI--NCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~~v~~~~ 197 (392)
-..|+||.+.+..+ .+.-. |+|.||..|+..|++.+. .||.|+..+....
T Consensus 180 i~~C~iC~~iv~~g--~~C~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSS-SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCC--cccCc-cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 56899999998865 33333 999999999999998655 7999999876553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.66 E-value=0.12 Score=41.76 Aligned_cols=50 Identities=26% Similarity=0.597 Sum_probs=39.2
Q ss_pred cccCCcccccccccccCCceeecCCC-CCcCChhHHHHHHhcCCCCCcccccccCCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLLPKC-NHAFHISCIDTWLSSHINCPMCRAHIVHET 197 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~lp~C-~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~ 197 (392)
...-..|-.|+-+.. ..|+ | .|.+|..|+...|.....||+|..++...-
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~----C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVE----CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEE----CSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccC--Ceee----ecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 334568999996643 2333 6 499999999999999999999999987653
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.29 E-value=0.099 Score=39.41 Aligned_cols=46 Identities=28% Similarity=0.617 Sum_probs=33.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCC----CCCcccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHI----NCPMCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~v 193 (392)
....|.||.+. ++.+.-- .|...||..|++..|.... .||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45789999753 4444444 4999999999998886543 599997543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.59 E-value=0.078 Score=42.35 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=26.4
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
++..|.||++.+.......-+. |+|.|+..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 4578999998754333334477 9999999999984
No 76
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=90.68 E-value=0.61 Score=32.14 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Q 016298 56 PPYVIIFVALVLSFILFLAFYVIKSKTGWCNSE 88 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR 88 (392)
.|+.+|+++++++++++.++..+..|+.|..|.
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRN 40 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 456677888888888887776666677777544
No 77
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=90.60 E-value=0.24 Score=36.03 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Q 016298 56 PPYVIIFVALVLSFILFLAFYVIKSKTGWCNSET 89 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR~ 89 (392)
.++.+|+++++++++++.++..+..||.|..|++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 4566777888888888777666666777776544
No 78
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=90.46 E-value=0.24 Score=35.95 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCccccCc
Q 016298 57 PYVIIFVALVLSFILFLAFYVIKSKTGWCNSET 89 (392)
Q Consensus 57 ~~vIiii~Il~~~~llv~~~~i~~r~~~~~rR~ 89 (392)
|+.||+++++++++++.++..+..|+.|.+|.+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 456677788888887777666666766776544
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.42 E-value=0.97 Score=35.77 Aligned_cols=35 Identities=20% Similarity=0.556 Sum_probs=23.5
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
..++.|.||- .|...+....- -|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 3578999995 33333322211 28999999999996
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.57 E-value=0.73 Score=33.84 Aligned_cols=44 Identities=27% Similarity=0.700 Sum_probs=31.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 191 (392)
.+..|.||... ++.+.-- .|...||..|+..-+.. .-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46789999863 3444433 58899999999975532 234999964
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.76 E-value=0.54 Score=34.54 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=30.8
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
.+..|.||.+. ++.+.-- .|...||..|+..-|.. .-.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 46789999853 3334333 48899999999865443 2249999654
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.41 E-value=0.86 Score=31.91 Aligned_cols=44 Identities=32% Similarity=0.774 Sum_probs=28.9
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRA 191 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 191 (392)
.|.||...-..++.+.-- .|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333444443 59999999999754432 224998864
No 83
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=78.40 E-value=5.6 Score=27.53 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 016298 61 IFVALVLSFILF 72 (392)
Q Consensus 61 iii~Il~~~~ll 72 (392)
++.++++.++++
T Consensus 17 VVgGv~~~~ii~ 28 (44)
T 2ks1_B 17 MVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 333344443333
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.94 E-value=0.49 Score=42.09 Aligned_cols=45 Identities=33% Similarity=0.660 Sum_probs=32.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 192 (392)
.++.|.+|... ++.+.. ..|.-.||..|+.+-+... -.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~C-d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCC-EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEEC-SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---Ceeeec-CCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 35789999854 444433 3489999999998766532 349999754
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.81 E-value=0.52 Score=42.78 Aligned_cols=45 Identities=31% Similarity=0.628 Sum_probs=32.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 192 (392)
.++.|.+|... ++ +..-..|...||..|+.+.+... -.||.|+..
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 46789999854 33 44444589999999998766532 359999754
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.63 E-value=0.43 Score=36.24 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=33.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~v~ 194 (392)
+...|.||.........+..- .|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 456799998876432334333 48899999999765432 335999977653
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.34 E-value=0.49 Score=34.82 Aligned_cols=47 Identities=23% Similarity=0.571 Sum_probs=32.8
Q ss_pred cCCcccccccccccCC-ceeecCCCCCcCChhHHHHHHh-----cCCCCCcccc
Q 016298 144 EGTECSVCLNEFQEDE-TVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~-~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~ 191 (392)
+...|+||...+.++. .|.-- .|..-||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4678999999886444 34433 4889999999865322 2345999965
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.78 E-value=0.37 Score=34.72 Aligned_cols=44 Identities=27% Similarity=0.673 Sum_probs=30.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCcccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~ 191 (392)
.+..|.||... ++.+.-- .|...||..|+.+-|... -.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 46789999874 3444444 499999999998654322 23887753
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.56 E-value=1 Score=36.70 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=31.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCR 190 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR 190 (392)
+++.|.||.+.=...+.+.-- .|+..||..|+..++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 578999998763322334444 49999999999887642 22366664
No 90
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=73.71 E-value=5 Score=30.20 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHh
Q 016298 61 IFVALVLSFILFLAFYVI-KSK 81 (392)
Q Consensus 61 iii~Il~~~~llv~~~~i-~~r 81 (392)
|+++-++++++++++.+| ..|
T Consensus 12 ivlGg~~~lll~~glcI~ccvk 33 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVR 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhhH
Confidence 566666666666666665 565
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=73.20 E-value=1.1 Score=40.24 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=33.6
Q ss_pred CCcccccccccccCC----ceeecCCCCCcCChhHHHHH------Hh-----cCCCCCccccc
Q 016298 145 GTECSVCLNEFQEDE----TVRLLPKCNHAFHISCIDTW------LS-----SHINCPMCRAH 192 (392)
Q Consensus 145 ~~~C~ICle~~~~~~----~vr~lp~C~H~FH~~CI~~W------l~-----~~~tCPlCR~~ 192 (392)
+..|+||...|.+++ .+..- .|..-||..|+.-= +. ..-.||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 457999999998876 34433 49999999997431 11 15679999765
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.21 E-value=0.5 Score=34.48 Aligned_cols=46 Identities=26% Similarity=0.677 Sum_probs=31.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~v 193 (392)
.+..|.||... ++.+.-- .|.-.||..|+.+=+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 4444444 49999999999865443 22499996654
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.58 E-value=1.3 Score=32.97 Aligned_cols=45 Identities=29% Similarity=0.656 Sum_probs=31.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
.+..|.||... ++.+.-- .|...||..|+.+-|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 46789999864 3444443 49999999999865432 2249999643
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.49 E-value=3 Score=33.08 Aligned_cols=45 Identities=27% Similarity=0.635 Sum_probs=31.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
.++.|.+|... ++.+.-- .|.-.||..|+.+=|.. .-.||.|+..
T Consensus 24 n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 46789999864 3444433 48899999999775543 2249999754
No 95
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.81 E-value=0.78 Score=36.59 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=32.2
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
+...|.||...-..+..+.. -.|...||..|+.+=|.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~C-D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFC-DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEEC-TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEc-CCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45689999976443333433 359999999999854432 2249999764
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.53 E-value=1.5 Score=35.87 Aligned_cols=45 Identities=27% Similarity=0.708 Sum_probs=29.5
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhcC----CCCCcccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSH----INCPMCRA 191 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~ 191 (392)
.|.||...-.+.+.+..--.|...||..|+++-|... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6899986522323333333599999999998655432 34999874
No 97
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=65.50 E-value=1.7 Score=39.02 Aligned_cols=44 Identities=27% Similarity=0.648 Sum_probs=30.5
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
++.|.+|... ++.+..- .|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999854 4444443 48899999999764432 2249999765
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.80 E-value=2 Score=34.45 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=30.5
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc---CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS---HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 191 (392)
...| ||......+..|.-- .|.-.||..|+..=+.. .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 898776666555554 49999999998753221 235999963
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.13 E-value=2.1 Score=33.83 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=33.4
Q ss_pred cCCccccccccc-ccCCceeecCCCCCcCChhHHHHHHh--cCCCCCcccccccC
Q 016298 144 EGTECSVCLNEF-QEDETVRLLPKCNHAFHISCIDTWLS--SHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~v~~ 195 (392)
++..|.||...- .+.+.+..-..|.-.||..|+..-+. ..-.||.|......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 467899999753 12223444445889999999985332 12349999765443
No 100
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=62.57 E-value=3.3 Score=45.95 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=43.4
Q ss_pred cCCcccccccccccCCceeecCCCC-CcCChhHHHHHHhcCCCCCcccccccCCCCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN-HAFHISCIDTWLSSHINCPMCRAHIVHETVT 199 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~ 199 (392)
+.-.|+|-++-|.+ .+++| -| +.|-..+|.+||..+.+||.=|.++......
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccc
Confidence 34579999999876 66788 76 6899999999999999999999988765443
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.25 E-value=1.4 Score=34.09 Aligned_cols=46 Identities=30% Similarity=0.738 Sum_probs=29.3
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc-----CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 191 (392)
+..|.||...=..++.+ .--.|...||..|+++=|.. .-.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34789998653333334 33359999999999854432 234888854
No 102
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=59.31 E-value=2.6 Score=31.98 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=31.6
Q ss_pred ccCCccccccccc-ccCCceeecCCCCCcCChhHHHHHHh--cCCCCCcccc
Q 016298 143 IEGTECSVCLNEF-QEDETVRLLPKCNHAFHISCIDTWLS--SHINCPMCRA 191 (392)
Q Consensus 143 ~~~~~C~ICle~~-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~ 191 (392)
.++..|.||...- .+.+.+..--.|.-.||..|+..-.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3568899998763 22334444445899999999975322 1224888864
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=58.58 E-value=6.2 Score=32.33 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=31.3
Q ss_pred cccCCcccccccccccCCceeec-CCCCCcCChhHHHHHHhcC----CCCCcccccccCC
Q 016298 142 LIEGTECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLSSH----INCPMCRAHIVHE 196 (392)
Q Consensus 142 ~~~~~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~----~tCPlCR~~v~~~ 196 (392)
..+++.|.+|.+ .++.+.-- +.|...||..|+. |... -.||.|+-.+-..
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 346788999984 23333322 0388999999998 5432 2488776555443
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.44 E-value=1.5 Score=33.17 Aligned_cols=44 Identities=39% Similarity=0.798 Sum_probs=27.3
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc-----CCCCCcccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCRA 191 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 191 (392)
.|.||...-..++ +..--.|...||..|+++=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~-ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGG-EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCC-EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5677775422333 3333358899999999854432 234888864
No 105
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.35 E-value=8 Score=33.27 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=31.2
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-----------cCCCCCcccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-----------SHINCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------~~~tCPlCR~ 191 (392)
.++.|.||.+. ++.+ .--.|...||..||.+=+. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46899999864 3433 3335999999999997552 2335999964
No 106
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.96 E-value=2.6 Score=39.12 Aligned_cols=45 Identities=38% Similarity=0.784 Sum_probs=25.8
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhc-----CCCCCcccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS-----HINCPMCRA 191 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 191 (392)
..|.+|...=..++.+.. -.|...||..|+++=|.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~C-D~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMC-DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEEC-SSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEc-CCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 468888764323333433 349999999999954432 234999964
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.05 E-value=14 Score=29.99 Aligned_cols=46 Identities=24% Similarity=0.513 Sum_probs=28.7
Q ss_pred cCCccccccccc------ccCCceeecCCCCCcCChhHHHHH------H-hcCCCCCccc
Q 016298 144 EGTECSVCLNEF------QEDETVRLLPKCNHAFHISCIDTW------L-SSHINCPMCR 190 (392)
Q Consensus 144 ~~~~C~ICle~~------~~~~~vr~lp~C~H~FH~~CI~~W------l-~~~~tCPlCR 190 (392)
....|.+|+..= ..++.+.-. .|+..||..||..+ + ...-.||-|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhh-hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 356899998762 222344444 49999999999632 2 2233477665
No 108
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.05 E-value=6.7 Score=31.22 Aligned_cols=44 Identities=30% Similarity=0.708 Sum_probs=27.2
Q ss_pred cCCcccccccccccCCceeecCC--CC-CcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPK--CN-HAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
+...| ||..... ++.+. --. |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9988653 33332 123 44 579999997 332 3359999764
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=52.93 E-value=7.6 Score=28.79 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=25.2
Q ss_pred cCCcccccccccccCCceeecC-CCCCcCChhHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLP-KCNHAFHISCID 177 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp-~C~H~FH~~CI~ 177 (392)
....|.+|...+.+++..+.-- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3568999999987765554443 589999999975
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=52.88 E-value=7.2 Score=30.58 Aligned_cols=38 Identities=16% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS 182 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 182 (392)
...|.+|.+.+++..-|..-..=.|.||..|-...+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 56899999999887655422223599999999998874
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.43 E-value=15 Score=27.97 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=31.8
Q ss_pred cCCccccccccccc-CCceeecCCCCCcCChhHHHHHHh-----cCCCCCcccccc
Q 016298 144 EGTECSVCLNEFQE-DETVRLLPKCNHAFHISCIDTWLS-----SHINCPMCRAHI 193 (392)
Q Consensus 144 ~~~~C~ICle~~~~-~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~v 193 (392)
+...| ||...+.. +..|..- .|..-||..|+.--.. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 99988753 3344444 4999999999863221 234599997654
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=52.32 E-value=1.9 Score=33.24 Aligned_cols=44 Identities=39% Similarity=0.798 Sum_probs=27.4
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc----C-CCCCcccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----H-INCPMCRA 191 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~-~tCPlCR~ 191 (392)
.|.||...-..++ +..--.|...||..|+++-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~-ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGG-EEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcc-eeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777766543333 3333358899999999865542 1 35888864
No 113
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.53 E-value=23 Score=24.50 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 016298 60 IIFVALV 66 (392)
Q Consensus 60 Iiii~Il 66 (392)
.++++++
T Consensus 16 ~~vVGvl 22 (44)
T 2jwa_A 16 SAVVGIL 22 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 114
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=50.93 E-value=4.7 Score=28.34 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=29.3
Q ss_pred CcccccccccccCCceeecC-CCCCcCChhHHHHHH----hcCCCCCccc
Q 016298 146 TECSVCLNEFQEDETVRLLP-KCNHAFHISCIDTWL----SSHINCPMCR 190 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp-~C~H~FH~~CI~~Wl----~~~~tCPlCR 190 (392)
-.|.+|...+.+++..+.-- .|.--||..|+.--. ...-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35889998886554443333 388899999976321 2455698885
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=50.61 E-value=3.1 Score=36.30 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=31.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHH-----hcCCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL-----SSHINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~ 192 (392)
+...| +|...+..+.....--.|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998875443333333489999999986321 124469999764
No 116
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.42 E-value=3 Score=32.78 Aligned_cols=52 Identities=17% Similarity=0.437 Sum_probs=35.0
Q ss_pred cCCccccccccccc-CCceeecCCCCCcCChhHHHHHHh--------cCCCCCcccccccC
Q 016298 144 EGTECSVCLNEFQE-DETVRLLPKCNHAFHISCIDTWLS--------SHINCPMCRAHIVH 195 (392)
Q Consensus 144 ~~~~C~ICle~~~~-~~~vr~lp~C~H~FH~~CI~~Wl~--------~~~tCPlCR~~v~~ 195 (392)
.+..|.||...-.. ...+..--.|...||..|+..=|. ..-.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35789999976432 233444445899999999987553 23359999776543
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.50 E-value=78 Score=25.13 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=36.0
Q ss_pred cCCcccccccccccC---Cc-eeecCCCCCcCChhHHHHHH-hcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQED---ET-VRLLPKCNHAFHISCIDTWL-SSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~---~~-vr~lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~v~~~ 196 (392)
....|.||-+++-.. +. +... .|+--.|..|.+-=. ..+..||.|++.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~-eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACN-ECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCS-SSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeee-ccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 356899999996432 21 2222 377788999988643 4677899999888643
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.45 E-value=6.5 Score=29.69 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=32.0
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHH---------hcCCCCCcccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL---------SSHINCPMCRAHI 193 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl---------~~~~tCPlCR~~v 193 (392)
...| ||...+..+..|.-- .|..-||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3567 899887654555544 499999999985321 2456799997643
No 119
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.61 E-value=4 Score=30.57 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=30.6
Q ss_pred ccCCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcccc
Q 016298 143 IEGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMCRA 191 (392)
Q Consensus 143 ~~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 191 (392)
.+...| ||...+..+..|.--- |..-||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 346678 9998776434555444 899999999864221 2335888854
No 120
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=44.57 E-value=8 Score=28.18 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=32.6
Q ss_pred cCCccccccccccc-CCceeecCCCCCcCChhHHHHHHh-------cCCCCCccccc
Q 016298 144 EGTECSVCLNEFQE-DETVRLLPKCNHAFHISCIDTWLS-------SHINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~-~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~ 192 (392)
++..|.||...... ...+..-..|.-.||..|+..=+. ..-.||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46789999987533 233444445999999999886432 23359988654
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=43.72 E-value=10 Score=28.53 Aligned_cols=44 Identities=30% Similarity=0.682 Sum_probs=27.0
Q ss_pred cCCcccccccccccCCceeecCC--CC-CcCChhHHHHHHhc----CCCCCccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPK--CN-HAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
+...| ||..... ++.+ .--. |. ..||..|+. |.. .-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8987643 4332 2223 55 589999997 432 2349999654
No 122
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=43.18 E-value=33 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 016298 60 IIFVALVLSFILFL 73 (392)
Q Consensus 60 Iiii~Il~~~~llv 73 (392)
.|++++++++++++
T Consensus 14 ~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 14 AVIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeehhHHHHHHH
Confidence 34444444544444
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=42.89 E-value=20 Score=30.27 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=30.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHH------h-----cCCCCCcccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL------S-----SHINCPMCRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl------~-----~~~tCPlCR~ 191 (392)
.++.|.||.+. ++ +..-..|...||..||.+=+ + ..-.|++|+-
T Consensus 56 ~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 46789999864 33 33333589999999999742 2 1235999954
No 124
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=42.49 E-value=9.8 Score=30.81 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=31.8
Q ss_pred CcccccccccccCCceeecC-CCCCcCChhHHHHHH---h-------cCCCCCccccc
Q 016298 146 TECSVCLNEFQEDETVRLLP-KCNHAFHISCIDTWL---S-------SHINCPMCRAH 192 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp-~C~H~FH~~CI~~Wl---~-------~~~tCPlCR~~ 192 (392)
..|.||...+.+......-- .|..-||..|+.-=- + ..-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 57999999986654433332 488999999975211 0 33459999765
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.01 E-value=16 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=23.0
Q ss_pred Cccccccccccc-------CCceeecCCCCCcCChhHHHHH
Q 016298 146 TECSVCLNEFQE-------DETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 146 ~~C~ICle~~~~-------~~~vr~lp~C~H~FH~~CI~~W 179 (392)
+.|.||+..-.. ++.+.-. .|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchhhCCCh
Confidence 579999876421 2334444 49999999999865
No 126
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.66 E-value=13 Score=27.27 Aligned_cols=43 Identities=26% Similarity=0.556 Sum_probs=29.2
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMC 189 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlC 189 (392)
..|-.|+..|.+.. ...-++|++.|+.+|=.=--..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999985432 23355699999999933222345579988
No 127
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.92 E-value=2.8 Score=31.23 Aligned_cols=45 Identities=20% Similarity=0.556 Sum_probs=27.5
Q ss_pred CcccccccccccCCceeec-CCCCCcCChhHHHHHH---h-----cCCCCCcccc
Q 016298 146 TECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWL---S-----SHINCPMCRA 191 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl---~-----~~~tCPlCR~ 191 (392)
..| ||......+..|.-- +.|..-||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 897766655544432 1388899999974210 0 1345999974
No 128
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.19 E-value=21 Score=27.27 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=24.7
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~ 178 (392)
+...|.+|...|..-..-..-..||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 35689999999975432222225999999999764
No 129
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.76 E-value=6.7 Score=29.92 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=30.9
Q ss_pred CCcccccccccccCCceeec-CCCCCcCChhHHHHHHh---------cCCCCCcccccc
Q 016298 145 GTECSVCLNEFQEDETVRLL-PKCNHAFHISCIDTWLS---------SHINCPMCRAHI 193 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~l-p~C~H~FH~~CI~~Wl~---------~~~tCPlCR~~v 193 (392)
...| ||......+..|.-- +.|..-||..|+.---. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4578 898875555444433 03999999999863211 234599997643
No 130
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.39 E-value=25 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=26.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL 180 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl 180 (392)
+...|.+|...|..-..-..-..||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4568999999997543222233599999999977653
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.35 E-value=4.2 Score=32.93 Aligned_cols=45 Identities=20% Similarity=0.568 Sum_probs=28.7
Q ss_pred cccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCccccc
Q 016298 147 ECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAH 192 (392)
Q Consensus 147 ~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 192 (392)
.|.||...-.+...+. -..|...||..|+++=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~-Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLV-CDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEE-CSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeE-CCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 5778876643333333 3359999999999864432 2248888543
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.36 E-value=26 Score=29.10 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=24.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~ 178 (392)
+...|.+|...|..-..-..-..||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45689999999975332222225999999999654
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.34 E-value=25 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=23.4
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~ 178 (392)
+..|.+|...|..-..-..-..||++|+..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999875332222224999999999643
No 134
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=34.61 E-value=24 Score=35.04 Aligned_cols=48 Identities=19% Similarity=0.500 Sum_probs=32.0
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHh---c--CCCCCcccccccCCC
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---S--HINCPMCRAHIVHET 197 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~--~~tCPlCR~~v~~~~ 197 (392)
..|++=+..|.. .+|-.. |.|.-|.+- ..||. + .-.||+|...+....
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHH
Confidence 579988887765 477776 999855432 34443 3 335999988875544
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.19 E-value=3.4 Score=33.88 Aligned_cols=47 Identities=17% Similarity=0.581 Sum_probs=30.5
Q ss_pred CcccccccccccCCceeecCCCCCcCChhHHHHHHhc----CCCCCcccccc
Q 016298 146 TECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSS----HINCPMCRAHI 193 (392)
Q Consensus 146 ~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~v 193 (392)
..|.||...-..++.+.-- .|...||..|+.+=|.. .-.||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccchh
Confidence 3688888764444444444 49999999999854332 22388886544
No 136
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.07 E-value=30 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=25.4
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
+...|.+|...|..-..-..-..||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999754322222259999999997654
No 137
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.63 E-value=23 Score=34.97 Aligned_cols=49 Identities=18% Similarity=0.412 Sum_probs=32.2
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHh---cC--CCCCcccccccCCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SH--INCPMCRAHIVHET 197 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~--~tCPlCR~~v~~~~ 197 (392)
...|+|=+..|.. .+|-.. |.|.=|.+ +..||. +. -.||+|...+....
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceecc--CCcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 3579988877765 467776 99984432 334443 33 35999998876554
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.26 E-value=24 Score=27.56 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=32.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHh-------cCCCCCccccccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLS-------SHINCPMCRAHIV 194 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~v~ 194 (392)
+...|.+|...|..-..--.-..||++||..|....+. ....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 45689999999975432222224999999999765431 1223666655443
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.48 E-value=21 Score=32.29 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=24.6
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDT 178 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~ 178 (392)
++..|.+|...|..-..-..-..||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45799999999975332222225999999998654
No 140
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=31.63 E-value=57 Score=22.43 Aligned_cols=21 Identities=5% Similarity=0.088 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016298 61 IFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 61 iii~Il~~~~llv~~~~i~~r 81 (392)
|..+++..+++++++......
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHH
Confidence 455666656665555555554
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.80 E-value=23 Score=32.27 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=25.5
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTW 179 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~W 179 (392)
+...|.+|...|..-..-..-..||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999999754322223359999999996654
No 142
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.49 E-value=58 Score=25.01 Aligned_cols=14 Identities=7% Similarity=0.373 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 016298 60 IIFVALVLSFILFL 73 (392)
Q Consensus 60 Iiii~Il~~~~llv 73 (392)
.|+++++++++++.
T Consensus 12 ~Iv~gvi~gilliG 25 (79)
T 2knc_B 12 VVLLSVMGAILLIG 25 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444443
No 143
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.25 E-value=7.2 Score=32.59 Aligned_cols=48 Identities=17% Similarity=0.450 Sum_probs=30.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAH 192 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 192 (392)
...|..|...|..-..-..-..||.+||..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 468999999986532222222599999999987766556668778544
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.51 E-value=8.1 Score=28.03 Aligned_cols=42 Identities=29% Similarity=0.683 Sum_probs=25.1
Q ss_pred CCcccccccccccCCceeecCC--CC-CcCChhHHHHHHhc----CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPK--CN-HAFHISCIDTWLSS----HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 191 (392)
...| ||..... ++.+ .--. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4566 8987642 3322 2223 44 579999998 433 234888854
No 145
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.47 E-value=38 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=22.9
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCID 177 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~ 177 (392)
+...|.+|...|..-..--.-..||.+|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4568999999996532111222499999998843
No 146
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.32 E-value=28 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHH
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCI 176 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI 176 (392)
.+.|+.|-......+.+.. =|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEE---CCeEecccCC
Confidence 3579999988877665542 5789999883
No 147
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.07 E-value=25 Score=29.73 Aligned_cols=34 Identities=12% Similarity=0.290 Sum_probs=23.5
Q ss_pred cCCcccccccccc-cCCceeecCCCCCcCChhHHH
Q 016298 144 EGTECSVCLNEFQ-EDETVRLLPKCNHAFHISCID 177 (392)
Q Consensus 144 ~~~~C~ICle~~~-~~~~vr~lp~C~H~FH~~CI~ 177 (392)
....|++|...|. ....-+.-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5689999999983 222223333599999998844
No 148
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=26.97 E-value=90 Score=19.00 Aligned_cols=22 Identities=9% Similarity=0.393 Sum_probs=9.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 016298 56 PPYVIIFVALVLSFILFLAFYV 77 (392)
Q Consensus 56 s~~vIiii~Il~~~~llv~~~~ 77 (392)
+|.+..++-|++++.-.+++|+
T Consensus 2 spiVA~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 2 SPVIATLLLILIAVAAAVLLYT 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 149
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.02 E-value=10 Score=27.39 Aligned_cols=42 Identities=31% Similarity=0.683 Sum_probs=25.7
Q ss_pred CCcccccccccccCCceeecCC--CC-CcCChhHHHHHHhc----CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPK--CN-HAFHISCIDTWLSS----HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 191 (392)
...| ||.... .++.+ .--. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4566 898764 24333 2223 55 689999998 332 234998864
No 150
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.21 E-value=11 Score=27.56 Aligned_cols=42 Identities=33% Similarity=0.724 Sum_probs=25.5
Q ss_pred CCcccccccccccCCceeecCC--CC-CcCChhHHHHHHhc----CCCCCcccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPK--CN-HAFHISCIDTWLSS----HINCPMCRA 191 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 191 (392)
...| ||.... .++.+. --. |. .-||..|+. |.. .-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~-CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIG-CDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeee-eeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4567 898863 343332 223 44 789999997 322 234998864
No 151
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.19 E-value=94 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016298 61 IFVALVLSFILFLAFYVI 78 (392)
Q Consensus 61 iii~Il~~~~llv~~~~i 78 (392)
++++.++.+.++..+..+
T Consensus 16 iVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.57 E-value=50 Score=23.67 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=29.0
Q ss_pred CCccccccccccc--CCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccC
Q 016298 145 GTECSVCLNEFQE--DETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVH 195 (392)
Q Consensus 145 ~~~C~ICle~~~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~ 195 (392)
...|+.|-+.+.. .+.+.. . -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCcccC--------EeccCCCcCCC
Confidence 4689999999875 333322 2 6789998874 58889888754
No 153
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=24.31 E-value=1.1e+02 Score=20.46 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 016298 58 YVIIFVALVLSFILFLAFYVIKSK 81 (392)
Q Consensus 58 ~vIiii~Il~~~~llv~~~~i~~r 81 (392)
+++|++++.++++-.++++.+..+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666555554444433
No 154
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.11 E-value=44 Score=24.37 Aligned_cols=41 Identities=20% Similarity=0.492 Sum_probs=31.0
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
...|+.|-+.+..++.+.. -+..||.+|+ .|-.|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCC
Confidence 4689999999987776553 5788888774 488898887643
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.10 E-value=78 Score=23.54 Aligned_cols=42 Identities=29% Similarity=0.602 Sum_probs=31.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
....|+.|-..+...+.+.. -+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCC
Confidence 35689999999877666543 5788998883 488888777544
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.96 E-value=28 Score=24.75 Aligned_cols=42 Identities=19% Similarity=0.484 Sum_probs=30.4
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
...|+.|-..+...+.+... =+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 46899999998876654322 5678898875 588887777543
No 157
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.47 E-value=66 Score=22.90 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
...|+.|-..+...+.+.. . -+..||..|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-Y-GGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-S-TTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEE-E-CccccCcccC--------eECCCCCcCCCC
Confidence 4689999999886543332 2 5788998774 588888777543
No 158
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.43 E-value=31 Score=27.97 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=10.9
Q ss_pred cCChhHHHHHHh
Q 016298 170 AFHISCIDTWLS 181 (392)
Q Consensus 170 ~FH~~CI~~Wl~ 181 (392)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999996
No 159
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.26 E-value=31 Score=27.89 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.9
Q ss_pred cCChhHHHHHHh
Q 016298 170 AFHISCIDTWLS 181 (392)
Q Consensus 170 ~FH~~CI~~Wl~ 181 (392)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999986
No 160
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=22.79 E-value=18 Score=28.61 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=26.0
Q ss_pred cCCcccccccccccCCceeecCCCC---CcCChhHHHHHHh----cCCCCCc-ccc
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCN---HAFHISCIDTWLS----SHINCPM-CRA 191 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~---H~FH~~CI~~Wl~----~~~tCPl-CR~ 191 (392)
+...| ||..... ++.|..- .|. ..||..|+. |. ..-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD-~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACD-NPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCC-SSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEec-CCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 45677 9987533 3433322 344 689999986 22 2335999 864
No 161
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.55 E-value=18 Score=35.51 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWL 180 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl 180 (392)
+...|.+|...|..-..-..-..||++||..|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3568999999986432111222499999999998765
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.13 E-value=83 Score=22.39 Aligned_cols=40 Identities=25% Similarity=0.664 Sum_probs=27.7
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
...|+.|-+.+...+.+.. . -+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcCC
Confidence 4679999988876433322 2 5688898774 4888888774
No 163
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=20.74 E-value=14 Score=25.79 Aligned_cols=41 Identities=24% Similarity=0.587 Sum_probs=25.5
Q ss_pred ccccccccCCceeecCCCCCcCChhHHHHHHh---cCCCCCcccc
Q 016298 150 VCLNEFQEDETVRLLPKCNHAFHISCIDTWLS---SHINCPMCRA 191 (392)
Q Consensus 150 ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 191 (392)
||......+..+.-- .|..-||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 677665533445444 3889999999864221 2335888864
No 164
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.68 E-value=75 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.473 Sum_probs=30.1
Q ss_pred cCCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCcccccccCC
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIVHE 196 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~~~ 196 (392)
....|+.|-+.+...+.+... -+..||..|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 357899999998765544322 5778898774 588887777543
No 165
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.29 E-value=62 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.685 Sum_probs=29.8
Q ss_pred CCcccccccccccCCceeecCCCCCcCChhHHHHHHhcCCCCCccccccc
Q 016298 145 GTECSVCLNEFQEDETVRLLPKCNHAFHISCIDTWLSSHINCPMCRAHIV 194 (392)
Q Consensus 145 ~~~C~ICle~~~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~v~ 194 (392)
...|+.|-..+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 5689999999987776654 4678898773 5888887775
No 166
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.16 E-value=69 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=24.7
Q ss_pred cCCcccccccccccCCceeecCCC-CCcCChhHHHHH
Q 016298 144 EGTECSVCLNEFQEDETVRLLPKC-NHAFHISCIDTW 179 (392)
Q Consensus 144 ~~~~C~ICle~~~~~~~vr~lp~C-~H~FH~~CI~~W 179 (392)
+..-|.||.++ ..+|.+. | +-+||..|...-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 45679999988 3488887 9 789999997763
No 167
>2jmv_A Scytovirin; protein, sugar binding protein, antiviral protein; NMR {Scytonema varium} PDB: 2qsk_A 2qt4_A
Probab=20.04 E-value=71 Score=24.76 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=10.3
Q ss_pred CcCCC--CCCCCcccccC
Q 016298 20 YYCDP--NCPFNYNCVPL 35 (392)
Q Consensus 20 ~~c~~--~c~~~~~cy~~ 35 (392)
+.|+- .|-...||-.+
T Consensus 24 ~ecdg~rtcss~g~cqg~ 41 (95)
T 2jmv_A 24 KQCDGARTCSSSGFCQGT 41 (95)
T ss_dssp TTCCSSCBCTTSSSSBSC
T ss_pred ccccccceecccceeccc
Confidence 44543 56666799876
Done!