BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016300
         (392 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUI4|UGPI6_ARATH Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis
           thaliana GN=At1g61900 PE=1 SV=1
          Length = 433

 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 188/339 (55%), Gaps = 15/339 (4%)

Query: 59  EPIEISPAVIP---PYPYAGEPLP-PMYPTFPTTYEPNLTGRCPVNFSAMSSIMQKTASD 114
           +P E  P + P   P P+     P PM P   +T  P L+G C +NFSA  S++Q T+ +
Sbjct: 28  KPEEFLPEISPDTSPQPFLPFIAPSPMVPYINSTM-PKLSGLCSLNFSASESLIQTTSHN 86

Query: 115 CSQPLAPLVGNVICCPQLGSLLHIFQGFYSMKSDKLVLQNTVANDCFSDILSILASRGAN 174
           C    APL+ NV+CCPQL + L I  G  S ++  L L  T +  C SD+  IL  +GA+
Sbjct: 87  CWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGAS 146

Query: 175 HTIPTLCSVTSLNLTGGSCPVKDVVSFEKIVNTSKLLDACSTVDPLKECCRPICQPAIME 234
             +  +CS+ S NLT  SCPV +V  FE  V+T+KLL AC  +DP+KECC   CQ AI++
Sbjct: 147 GQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILD 206

Query: 235 AALQIS-GTQMTFTENKNFVGGSDQVDALNDCKGVAYSYLSSKLSAEAANSAFRILSACK 293
           AA  IS     T T+N          D +NDCK V   +L++KL         R L+ CK
Sbjct: 207 AATNISLKASETLTDNS---------DRINDCKNVVNRWLATKLDPSRVKETLRGLANCK 257

Query: 294 VNKVCPLDFKQPSEVIEACRNVAAPSPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGS 353
           +N+VCPL F     +   C N  +    CC ++ +Y++ +QKQ LITN QA+ CA   G+
Sbjct: 258 INRVCPLVFPHMKHIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCATSLGT 317

Query: 354 MLRKEGVMTNIYELCDVDLKDFSIQAYGQQGLSFFSYLP 392
            L+K  +  NI+ +C + LKDFS+Q   Q+       LP
Sbjct: 318 KLQKLNITKNIFSVCHISLKDFSLQVGNQESGCLLPSLP 356


>sp|B2VG22|MUTS_ERWT9 DNA mismatch repair protein MutS OS=Erwinia tasmaniensis (strain
           DSM 17950 / Et1/99) GN=mutS PE=3 SV=1
          Length = 853

 Score = 34.3 bits (77), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 133 GSLLHIFQGFYSMKSDKLV-----LQNTVANDCFSDILSILASRGA--NHTIPTLCSVTS 185
           G  L + +  Y    D+L+     LQ++ A     D+L+ LA R    N++ PTL     
Sbjct: 520 GKALSLEKALYEQLFDRLLPHLAALQDSAAALAELDVLTNLAERAWTLNYSCPTLSDKPG 579

Query: 186 LNLTGGSCPVKDVV 199
           + LTGG  PV + V
Sbjct: 580 IKLTGGRHPVVEQV 593


>sp|Q54C67|CLCF_DICDI Chloride channel protein F OS=Dictyostelium discoideum GN=clcF PE=3
           SV=1
          Length = 809

 Score = 32.3 bits (72), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 33/168 (19%)

Query: 73  YAGEPLPPMYPT----FPTTYE----PNLTGRCPVNFSAMSSIMQKTASDCSQPLAPLVG 124
           + GE +  ++P     +PT Y       L G      S+   I++ T +D +  +  L+G
Sbjct: 437 FVGELMLVLFPNSKEIYPTGYAVVGAAALCGGATRTVSSAMIILELT-NDLTYMVPVLLG 495

Query: 125 NVICCPQLGSLLHI-------------FQGFYSMKSDKLVLQNTVANDCFS-------DI 164
            V+ C  +G+LL+              +  FY  KSD L+ ++ +  D +          
Sbjct: 496 VVLSC-GIGNLLNHSIYDCFLKNKNLPYLPFYKAKSDSLIARDVMKRDLYYVCQNTTLSQ 554

Query: 165 LSILASRGANHTIPTLCSVTSLNLTG--GSCPVKDVVSF-EKIVNTSK 209
           +S L  R   H+IP + S   L L G   +  +++V+++ E++ + SK
Sbjct: 555 ISNLLKRVDEHSIPVVSSDNDLQLIGTISTTTLEEVIAYHERLHSYSK 602


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,530,112
Number of Sequences: 539616
Number of extensions: 5532376
Number of successful extensions: 14565
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14451
Number of HSP's gapped (non-prelim): 122
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)