Query 016300
Match_columns 392
No_of_seqs 26 out of 28
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 11:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016300.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016300hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma1 a.5.3.1 (A:1-75) Super 16.3 48 0.0035 22.9 2.9 22 267-288 36-58 (75)
2 d1auaa1 a.5.3.1 (A:4-96) N-ter 15.8 47 0.0034 24.4 2.9 22 267-288 53-75 (93)
3 d2cvla1 d.79.1.1 (A:1-124) Put 14.4 48 0.0035 24.4 2.6 43 139-183 28-73 (124)
4 d1r5la1 a.5.3.1 (A:25-90) Alph 10.9 1.4E+02 0.0099 20.5 4.0 36 267-304 26-62 (66)
5 d1jfla1 c.78.2.1 (A:1-115) Asp 10.9 36 0.0026 25.4 0.9 38 319-359 78-115 (115)
6 d1wdya_ d.211.1.1 (A:) RNase L 10.5 56 0.004 24.8 1.9 24 157-180 261-284 (285)
7 d1ykga1 c.23.5.2 (A:63-208) Su 10.5 81 0.0059 24.2 2.9 32 344-375 12-43 (146)
8 d5nula_ c.23.5.1 (A:) Flavodox 10.2 48 0.0035 24.0 1.4 30 346-375 14-43 (138)
9 d1pvva2 c.78.1.1 (A:151-313) O 9.9 88 0.0064 24.0 3.0 41 261-312 9-49 (163)
10 d1f4pa_ c.23.5.1 (A:) Flavodox 9.0 98 0.0072 23.0 2.9 32 344-375 14-45 (147)
No 1
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.28 E-value=48 Score=22.89 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=19.2
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHh
Q 016300 267 GVAYSYL-SSKLSAEAANSAFRI 288 (392)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~ 288 (392)
..++||| |+|.+.+.|.++||.
T Consensus 36 ~~LlRFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 36 YFLLRWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 6789999 679999999999974
No 2
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.77 E-value=47 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.7
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHh
Q 016300 267 GVAYSYL-SSKLSAEAANSAFRI 288 (392)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~ 288 (392)
..++||| |+|.+.+.|.+||+.
T Consensus 53 ~~llRfLrAr~fd~~~a~~ml~~ 75 (93)
T d1auaa1 53 STLLRFLRARKFDVQLAKEMFEN 75 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHH
Confidence 6899999 789999999999975
No 3
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Probab=14.35 E-value=48 Score=24.44 Aligned_cols=43 Identities=9% Similarity=0.312 Sum_probs=31.3
Q ss_pred HhhcccCCCCeeeec---cchhhhhHHHHHHHHhhcCCcCCcCcccee
Q 016300 139 FQGFYSMKSDKLVLQ---NTVANDCFSDILSILASRGANHTIPTLCSV 183 (392)
Q Consensus 139 ~~Gq~S~~s~~L~Ln---~t~A~~CfSDi~~iL~s~GAn~~l~~iCSv 183 (392)
+-||-+.+.+...+. .+.+..||..+.++|.+.|++ +..+..+
T Consensus 28 vSGq~~~d~~~~~~~~~~~~Q~~~~l~~i~~~L~~~G~~--~~dvvk~ 73 (124)
T d2cvla1 28 VSGQIPLAPDGSLVEGDIRVQTERVMENLKAVLEAAGSG--LSRVVQT 73 (124)
T ss_dssp EEEECSBCTTSCBCCSSHHHHHHHHHHHHHHHHHHTTCC--GGGEEEE
T ss_pred EEEecCCCCCcccccCCHhHHHHHHHHHHHHHHHHhcCC--ccccEEE
Confidence 456666666555554 567899999999999999995 4455544
No 4
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=1.4e+02 Score=20.47 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=25.7
Q ss_pred hhHHHHh-hcCCCHHHHHHHHHhhhcCcCCccccccCCC
Q 016300 267 GVAYSYL-SSKLSAEAANSAFRILSACKVNKVCPLDFKQ 304 (392)
Q Consensus 267 ~VVl~wL-a~KL~~~~An~~~R~LS~CkVNkvCPL~F~d 304 (392)
...+||| |+|.+.+.|.++++.--. .-+..|-.|.+
T Consensus 26 ~~LlrFLRarkf~~~ka~~~l~~y~~--~R~~~peif~~ 62 (66)
T d1r5la1 26 SFLLRFLRARDFDLDLAWRLLKNYYK--WRAECPEISAD 62 (66)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHCHHHHSC
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH--HHHHCHHHccC
Confidence 6889999 678999999999987543 33344544443
No 5
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.87 E-value=36 Score=25.35 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=28.3
Q ss_pred CchhhhhhHHHHHHhhhHhhhhhhhHHHHHHHHHHHHhhcC
Q 016300 319 SPSCCSSLNAYIAGVQKQMLITNKQAIICAAVFGSMLRKEG 359 (392)
Q Consensus 319 ~~sCC~al~sYvs~lQkQ~lITNlQAl~CAt~lGs~Lqk~~ 359 (392)
-.-||..+|.|...+|++. |+-=|+=+...+.++++.|
T Consensus 78 i~i~cNT~H~~~d~i~~~~---~iP~l~i~~~t~~~i~~~G 115 (115)
T d1jfla1 78 IIMPCNTAHAFVEDIRKAI---KIPIISMIEETAKKVKELG 115 (115)
T ss_dssp EECSCTGGGGGHHHHHHHC---SSCBCCHHHHHHHHHHHTT
T ss_pred EEEcCcHHHHHHHHHHHHC---CCCEecHHHHHHHHHHhcC
Confidence 3468999999999999976 4555555666677777765
No 6
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.51 E-value=56 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHhhcCCcCCcCcc
Q 016300 157 ANDCFSDILSILASRGANHTIPTL 180 (392)
Q Consensus 157 A~~CfSDi~~iL~s~GAn~~l~~i 180 (392)
+.+.-.++.++|.+.||+-|...+
T Consensus 261 ~~~~~~eiv~~Ll~~GAd~n~~d~ 284 (285)
T d1wdya_ 261 VELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHcCCHHHHHHHHHCCCCCCcccC
Confidence 455678999999999999887754
No 7
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.48 E-value=81 Score=24.21 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCcccccccccccccccc
Q 016300 344 AIICAAVFGSMLRKEGVMTNIYELCDVDLKDF 375 (392)
Q Consensus 344 Al~CAt~lGs~Lqk~~V~~nIY~LC~I~LKDF 375 (392)
|-..|..|...|++.|+...++++-+++..++
T Consensus 12 ae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l 43 (146)
T d1ykga1 12 ARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI 43 (146)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG
T ss_pred HHHHHHHHHHHHHHCCCCceEeeccccchhhc
Confidence 44568889999999999999999999987765
No 8
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}
Probab=10.23 E-value=48 Score=23.97 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCcccccccccccccccc
Q 016300 346 ICAAVFGSMLRKEGVMTNIYELCDVDLKDF 375 (392)
Q Consensus 346 ~CAt~lGs~Lqk~~V~~nIY~LC~I~LKDF 375 (392)
.-|..++..|++.|+...+|.+.+++..||
T Consensus 14 ~vA~~ia~~l~~~g~~v~~~~~~~~~~~~l 43 (138)
T d5nula_ 14 KMAELIAKGIIESGKDVNTINVSDVNIDEL 43 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGCCHHHH
T ss_pred HHHHHHHHHHHhcCCcceeccccccccccc
Confidence 357788889999999999999999876654
No 9
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=9.90 E-value=88 Score=24.01 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=30.3
Q ss_pred cCCcchhhHHHHhhcCCCHHHHHHHHHhhhcCcCCccccccCCCchHHHHHh
Q 016300 261 ALNDCKGVAYSYLSSKLSAEAANSAFRILSACKVNKVCPLDFKQPSEVIEAC 312 (392)
Q Consensus 261 ~v~DCK~VVl~wLa~KL~~~~An~~~R~LS~CkVNkvCPL~F~d~s~V~k~C 312 (392)
-|.|.+||.+||+- +++.+ |.+|.-++|-.|.-+.++.+.-
T Consensus 9 ~VGD~~nv~~Sli~----------~l~~~-g~~v~~~~P~~~~~~~~~~~~~ 49 (163)
T d1pvva2 9 YVGDGNNVAHSLMI----------AGTKL-GADVVVATPEGYEPDEKVIKWA 49 (163)
T ss_dssp EESCCCHHHHHHHH----------HHHHT-TCEEEEECCTTCCCCHHHHHHH
T ss_pred EECCCcHHHHHHHH----------HHHHc-CCeEEEecccccCCChHHHHHH
Confidence 45677899999973 34444 6899999999998777766543
No 10
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=9.04 E-value=98 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcCcccccccccccccccc
Q 016300 344 AIICAAVFGSMLRKEGVMTNIYELCDVDLKDF 375 (392)
Q Consensus 344 Al~CAt~lGs~Lqk~~V~~nIY~LC~I~LKDF 375 (392)
+-..|..+...|++.|+..+++++-+++..|+
T Consensus 14 te~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~ 45 (147)
T d1f4pa_ 14 TEYTAETIARELADAGYEVDSRDAASVEAGGL 45 (147)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeccccchhhh
Confidence 34568899999999999999999998876664
Done!