BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016306
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 28/296 (9%)
Query: 110 LRKLISGAVAGAVSRTAVAPLETIRTHLMVGSCGNS-SGE-----VFDAIL---KSDGWK 160
L+ ++G VA A+S+TAVAP+E ++ L V S E + D ++ K G+
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 161 GLFRGNFVNVIRVAPSKAIELFAYDTVKK-HLAPKPGEEPKLPIPASSIAGAVAGFSSTL 219
+RGN NVIR P++A+ D K+ L + A ++A A +++L
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127
Query: 220 C-TYPLELLKTRVTIQRGV------YKNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYA 272
C YPL+ +TR+ G + L + I + +G LY+G S+ G++ Y
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187
Query: 273 ATNYFAYDTLRKAYKKAFTKEEIGNIVTLLXXXXXXXXXXXXTFPLEVARKHMQAGALNG 332
A + YDT + + + IV+ + ++P + R+ M +G
Sbjct: 188 AAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM--MQSG 242
Query: 333 RQ-----YQNMLHALASILEKEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKIL 383
R+ Y + I + EG +KG + ++ + A + + Y+ KK +
Sbjct: 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 112 KLISGAVAGAVSRTAVAPLETIRTHLMV------GSCGNSSGEVFDAILKSDGWKGLFRG 165
+L++G+ GA++ P + ++ G S+ E + I + +G +GL++G
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 166 NFVNVIRVAPSKAIELFAYDTVKKHLAPKPGEEPKLPIPASSIAGAVAGFSSTLCTYPLE 225
NV R A EL YD +K L LP +S GA GF +T+ P++
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA--GFCTTVIASPVD 224
Query: 226 LLKTR-VTIQRGVYKNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYAATNYFAYDTLRK 284
++KTR + G Y + LT++R+EGP Y+G S + + + + Y+ L++
Sbjct: 225 VVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Query: 285 AYKKAFTKEE 294
A A+ E
Sbjct: 285 ALMAAYQSRE 294
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 219 LCTYPLELLKTRVTIQ---RGV--------YKNLLDAFLTIVREEGPAELYRGLTSSLIG 267
L T+PL+ K R+ IQ +G+ Y+ +L LT+VR EGP LY GL + L
Sbjct: 17 LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 268 VVPYAATNYFAYDTLRKAYKKAFTKEEIGNIVTLLXXXXXXXXXXXXTFPLEV--ARKHM 325
+ +A+ YD++++ Y K IG+ LL P +V R
Sbjct: 77 QMSFASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGALAVAVAQPTDVVKVRFQA 134
Query: 326 QAGALNGRQYQNMLHALASILEKEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKILIE 385
QA A GR+YQ+ + A +I +EG+ GL+KG P+ + + Y+ K L++
Sbjct: 135 QARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 121/303 (39%), Gaps = 39/303 (12%)
Query: 112 KLISGAVAGAVSRTAVAPLETIRTHLMVGSCGNSSGEVFDA--------------ILKSD 157
K + A ++ PL+T + L + G S G V A +++++
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQ--GESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 158 GWKGLFRGNFVNVIRVAPSKAIELFAYDTVKKHLAPKPGEEPKLPIPASSIAGAVAGFSS 217
G + L+ G + R ++ + YD+VK+ G E I + +AG+ G +
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSE-HAGIGSRLLAGSTTGALA 118
Query: 218 TLCTYPLELLKTRVTIQRGV-----YKNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYA 272
P +++K R Q Y++ ++A+ TI REEG L++G + ++
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 273 ATNYFAYDTLRKAYKKAFTKEEIGNIVT------LLXXXXXXXXXXXXTFPLEVARKHMQ 326
YD ++ KA N++T P++V +
Sbjct: 179 CAELVTYDLIKDTLLKA-------NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM 231
Query: 327 AGALNGRQYQNMLHALASILEKEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKILIEK 386
AL QY + H ++L KEG YKG PS ++L + F+ YE K+ L+
Sbjct: 232 NSALG--QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Query: 387 EES 389
+S
Sbjct: 290 YQS 292
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 185 DTVKKHLAPKPGEEPK------LPIPASSIAGAVAGFSSTLCTYPLELLKTRVTIQRGVY 238
D + K+ PG+ + L A+ + G + G S+ L + + LLK Q+
Sbjct: 354 DALPKYTPESPGDATRNLSQQCLNALANVVPGLIGG-SADLASSNMTLLKMFGDFQKDTA 412
Query: 239 KNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYAATNYFAYDTLRKAYK 287
+ F VRE G + G+ G VPY AT + D +R A +
Sbjct: 413 EERNVRFG--VREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMR 459
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,932,965
Number of Sequences: 62578
Number of extensions: 363174
Number of successful extensions: 984
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 5
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)