Query 016306
Match_columns 392
No_of_seqs 377 out of 2034
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.2E-55 4.3E-60 419.4 20.4 268 112-385 4-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 7.6E-55 2.6E-59 412.9 23.6 272 108-383 6-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.1E-35 3.8E-40 281.3 15.3 185 202-386 6-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.1E-35 1E-39 279.0 13.6 181 205-387 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 18.6 96 0.0033 22.2 3.1 34 351-384 34-67 (81)
6 3tgu_G UQCRQ, mitochondrial ub 12.6 1.4E+02 0.0048 21.3 2.7 34 256-289 36-69 (81)
7 3f2e_A SIRV coat protein; four 12.5 66 0.0023 22.7 0.9 37 231-267 1-41 (100)
8 2a3d_A Protein (de novo three- 11.3 1.4E+02 0.0047 19.6 2.1 39 223-261 10-48 (73)
9 3vjj_A P9-1; 3.00A {Rice black 10.7 1E+02 0.0035 27.5 1.7 35 309-350 273-307 (368)
10 1pp9_G Ubiquinol-cytochrome C 10.3 1.7E+02 0.0057 20.9 2.4 35 350-384 33-67 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-55 Score=419.44 Aligned_cols=268 Identities=22% Similarity=0.348 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHhHhhcCCC------------CCChHHHHHHHHHhhCcccccccchHHHHhHHHHHHH
Q 016306 112 KLISGAVAGAVSRTAVAPLETIRTHLMVGSC------------GNSSGEVFDAILKSDGWKGLFRGNFVNVIRVAPSKAI 179 (392)
Q Consensus 112 ~~~aG~~ag~~~~~~~~Pld~iktr~Q~~~~------------~~s~~~~~~~i~~~eG~~glyrG~~~~~l~~~~~~~i 179 (392)
++++|++|++++.++++|||+||+|+|++.. +.+..+++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999753 4588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCcchhhhhhhhHHHHHhhhccchhhhHHHHhhcCC-----CCCCHHHHHHHHHHhcCc
Q 016306 180 ELFAYDTVKKHLAPKPGEEPKLPIPASSIAGAVAGFSSTLCTYPLELLKTRVTIQRG-----VYKNLLDAFLTIVREEGP 254 (392)
Q Consensus 180 ~f~~y~~~k~~l~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~iKtr~q~~~~-----~~~~~~~~~~~i~~~eG~ 254 (392)
+|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. .|.++++++++|+++||+
T Consensus 84 ~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999875422 3466778999999999999999999999999999863 689999999999999999
Q ss_pred cccccchhhhhhchhhhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHhhhhhHHHhhccChHHHHHHHHHcCccCCCC
Q 016306 255 AELYRGLTSSLIGVVPYAATNYFAYDTLRKAYKKAFTKEEIGNIVTLLIGSAAGAISSSATFPLEVARKHMQAGALNGRQ 334 (392)
Q Consensus 255 ~glyrG~~~~ll~~~~~~~~~f~~ye~lk~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldvvktr~q~~~~~~~~ 334 (392)
+|||||+.+++++.+|+.+++|.+||.+|+.+.+... ...+....+++|++||++++++++|+|+||+|||.+.. ..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~--~~ 237 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--GQ 237 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--SS
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc--cc
Confidence 9999999999999999999999999999998765322 23445678999999999999999999999999999753 35
Q ss_pred CCcHHHHHHHHHHhcCccccccchHHHHhhHhhhHHHHHHHHHHHHHHHhh
Q 016306 335 YQNMLHALASILEKEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKILIE 385 (392)
Q Consensus 335 y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~ 385 (392)
|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.6e-55 Score=412.90 Aligned_cols=272 Identities=24% Similarity=0.414 Sum_probs=235.5
Q ss_pred chHHHHHHHHHHHHHHHHhhccHHHHHhHhhcCC---------CCCChHHHHHHHHHhhCcccccccchHHHHhHHHHHH
Q 016306 108 PSLRKLISGAVAGAVSRTAVAPLETIRTHLMVGS---------CGNSSGEVFDAILKSDGWKGLFRGNFVNVIRVAPSKA 178 (392)
Q Consensus 108 ~~~~~~~aG~~ag~~~~~~~~Pld~iktr~Q~~~---------~~~s~~~~~~~i~~~eG~~glyrG~~~~~l~~~~~~~ 178 (392)
+.+.++++|++||+++.++++|||+||||+|++. .+++..+++++|+++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 3577899999999999999999999999999874 2468899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC--CCcchhhhhhhhHHHHHhhhccchhhhHHHHhhcC------CCCCCHHHHHHHHHH
Q 016306 179 IELFAYDTVKKHLAPKPGEEPK--LPIPASSIAGAVAGFSSTLCTYPLELLKTRVTIQR------GVYKNLLDAFLTIVR 250 (392)
Q Consensus 179 i~f~~y~~~k~~l~~~~~~~~~--~~~~~~~~ag~~ag~~~~~v~~Pld~iKtr~q~~~------~~~~~~~~~~~~i~~ 250 (392)
++|.+||.+|+.+....+.... .+....+++|++||++++++++|+|+||+|+|++. ..|.++++++++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 9999999999954322111111 12356789999999999999999999999999974 368999999999999
Q ss_pred hcCccccccchhhhhhchhhhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHhhhhhHHHhhccChHHHHHHHHHcCcc
Q 016306 251 EEGPAELYRGLTSSLIGVVPYAATNYFAYDTLRKAYKKAFTKEEIGNIVTLLIGSAAGAISSSATFPLEVARKHMQAGAL 330 (392)
Q Consensus 251 ~eG~~glyrG~~~~ll~~~~~~~~~f~~ye~lk~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldvvktr~q~~~~ 330 (392)
+||++|||||+.+++++.+|+.+++|.+||.+|+.+.+. +..+....+++|++||++++++++|+|+||+|||++..
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~ 242 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999976432 23346677899999999999999999999999998753
Q ss_pred C---CCCCCcHHHHHHHHHHhcCccccccchHHHHhhHhhhHHHHHHHHHHHHHHH
Q 016306 331 N---GRQYQNMLHALASILEKEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKIL 383 (392)
Q Consensus 331 ~---~~~y~~~~~~~~~i~~~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l 383 (392)
. ...|.++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+.+
T Consensus 243 ~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 2 2359999999999999999999999999999996 57889999999998754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-35 Score=281.25 Aligned_cols=185 Identities=25% Similarity=0.407 Sum_probs=163.3
Q ss_pred CcchhhhhhhhHHHHHhhhccchhhhHHHHhhcC--------CCCCCHHHHHHHHHHhcCccccccchhhhhhchhhhHH
Q 016306 202 PIPASSIAGAVAGFSSTLCTYPLELLKTRVTIQR--------GVYKNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYAA 273 (392)
Q Consensus 202 ~~~~~~~ag~~ag~~~~~v~~Pld~iKtr~q~~~--------~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~ 273 (392)
+....+++|++||+++.++++|+|+||+|+|++. ..|+++++++++|+++||++|||||+.+++++.+|+.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 4456889999999999999999999999999974 26899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccc-c--chhHHHHHHhhhhhHHHhhccChHHHHHHHHHcCccC---CCCCCcHHHHHHHHHH
Q 016306 274 TNYFAYDTLRKAYKKAFTKE-E--IGNIVTLLIGSAAGAISSSATFPLEVARKHMQAGALN---GRQYQNMLHALASILE 347 (392)
Q Consensus 274 ~~f~~ye~lk~~~~~~~~~~-~--~~~~~~~~~g~~ag~~a~~~t~Pldvvktr~q~~~~~---~~~y~~~~~~~~~i~~ 347 (392)
++|.+||.+|+.+......+ . ......+++|++||++++++++|+|+||+|||++... ...|.++++|+++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 99999999999654322211 1 1335678999999999999999999999999997532 2358999999999999
Q ss_pred hcCccccccchHHHHhhHhhhHHHHHHHHHHHHHHHhhh
Q 016306 348 KEGLPGLYKGLGPSCIKLVPAAGISFMCYEACKKILIEK 386 (392)
Q Consensus 348 ~eG~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~~ 386 (392)
+||++|||||+.++++|.+|..+++|.+||.+|+.+.+.
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999977543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.1e-35 Score=279.02 Aligned_cols=181 Identities=31% Similarity=0.533 Sum_probs=164.7
Q ss_pred hhhhhhhhHHHHHhhhccchhhhHHHHhhcCC-----------CCCCHHHHHHHHHHhcCccccccchhhhhhchhhhHH
Q 016306 205 ASSIAGAVAGFSSTLCTYPLELLKTRVTIQRG-----------VYKNLLDAFLTIVREEGPAELYRGLTSSLIGVVPYAA 273 (392)
Q Consensus 205 ~~~~ag~~ag~~~~~v~~Pld~iKtr~q~~~~-----------~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~ 273 (392)
..+++|++||+++.++++|+|+||+|+|++.. .|+++++++++|+++||+++||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999753 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchhHHHHHHhhhhhHHHhhccChHHHHHHHHHcCccC--CCCCCcHHHHHHHHHHhcCc
Q 016306 274 TNYFAYDTLRKAYKKAFTKEEIGNIVTLLIGSAAGAISSSATFPLEVARKHMQAGALN--GRQYQNMLHALASILEKEGL 351 (392)
Q Consensus 274 ~~f~~ye~lk~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldvvktr~q~~~~~--~~~y~~~~~~~~~i~~~eG~ 351 (392)
++|.+||.+|+.+.+.. +..+....+++|++||++++++++|+|+||+|||++... ...|.++++|+++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999885431 135567789999999999999999999999999998642 33599999999999999999
Q ss_pred cccccchHHHHhhHhhhHHHHHHHHHHHHHHHhhhh
Q 016306 352 PGLYKGLGPSCIKLVPAAGISFMCYEACKKILIEKE 387 (392)
Q Consensus 352 ~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~~~~ 387 (392)
+|||||+.++++|.+|..+++|.+||.+|+.+.+..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999887543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.58 E-value=96 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=26.1
Q ss_pred ccccccchHHHHhhHhhhHHHHHHHHHHHHHHHh
Q 016306 351 LPGLYKGLGPSCIKLVPAAGISFMCYEACKKILI 384 (392)
Q Consensus 351 ~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~ 384 (392)
+...+|-+..+++.++|..++.+.+|+..++...
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555567788899999999999999887654
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.56 E-value=1.4e+02 Score=21.28 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=25.5
Q ss_pred ccccchhhhhhchhhhHHHHHHHHHHHHHHHHhh
Q 016306 256 ELYRGLTSSLIGVVPYAATNYFAYDTLRKAYKKA 289 (392)
Q Consensus 256 glyrG~~~~ll~~~~~~~~~f~~ye~lk~~~~~~ 289 (392)
..+|-+...++..+|...+.+.+|++.++.....
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677778888899999999998877554
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=12.53 E-value=66 Score=22.65 Aligned_cols=37 Identities=8% Similarity=0.255 Sum_probs=21.4
Q ss_pred HhhcCCCCCCHHHHHHHHHHhcCccc----cccchhhhhhc
Q 016306 231 VTIQRGVYKNLLDAFLTIVREEGPAE----LYRGLTSSLIG 267 (392)
Q Consensus 231 ~q~~~~~~~~~~~~~~~i~~~eG~~g----lyrG~~~~ll~ 267 (392)
||.+-.++.++-+-+..++.+-|+.| +|.||...+.|
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 45666677778788888888888754 66676665544
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=11.33 E-value=1.4e+02 Score=19.59 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=20.9
Q ss_pred chhhhHHHHhhcCCCCCCHHHHHHHHHHhcCccccccch
Q 016306 223 PLELLKTRVTIQRGVYKNLLDAFLTIVREEGPAELYRGL 261 (392)
Q Consensus 223 Pld~iKtr~q~~~~~~~~~~~~~~~i~~~eG~~glyrG~ 261 (392)
-+..||||+|.-.+.-......-++|..-|.-..-|+|-
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456789999987654444444444444333323334443
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=10.71 E-value=1e+02 Score=27.52 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=24.9
Q ss_pred HHHhhccChHHHHHHHHHcCccCCCCCCcHHHHHHHHHHhcC
Q 016306 309 AISSSATFPLEVARKHMQAGALNGRQYQNMLHALASILEKEG 350 (392)
Q Consensus 309 ~~a~~~t~Pldvvktr~q~~~~~~~~y~~~~~~~~~i~~~eG 350 (392)
.++++=-||||.+|-.++.-- ++...+++.+.++|
T Consensus 273 qLaTFdnypfdllRfqL~Sli-------stp~~I~e~i~K~G 307 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI-------STPALIREKIAKEG 307 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC-------CCCHHHHHHHHHSC
T ss_pred eeecCCCCCHHHHHHHhhhhc-------cChHHHHHHHHhcC
Confidence 455677899999987776532 23456778888887
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=10.25 E-value=1.7e+02 Score=20.90 Aligned_cols=35 Identities=11% Similarity=0.308 Sum_probs=27.6
Q ss_pred CccccccchHHHHhhHhhhHHHHHHHHHHHHHHHh
Q 016306 350 GLPGLYKGLGPSCIKLVPAAGISFMCYEACKKILI 384 (392)
Q Consensus 350 G~~glyrG~~~~llr~~p~~~i~f~~ye~~k~~l~ 384 (392)
|+...+|-+..+++.++|...+.+.+|+..++...
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 34455666777888999999999999999887654
Done!