Query 016307
Match_columns 392
No_of_seqs 266 out of 2427
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:40:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15227 zf-C3HC4_4: zinc fing 99.1 4.1E-11 8.9E-16 79.5 1.0 34 92-126 1-42 (42)
2 KOG1840 Kinesin light chain [C 99.0 1.5E-08 3.3E-13 102.5 16.8 177 190-381 206-384 (508)
3 TIGR00599 rad18 DNA repair pro 98.8 3.8E-09 8.3E-14 103.1 4.8 62 88-150 25-92 (397)
4 smart00504 Ubox Modified RING 98.8 3.8E-09 8.2E-14 76.8 3.5 56 89-145 1-62 (63)
5 KOG4367 Predicted Zn-finger pr 98.8 2.3E-09 4.9E-14 102.5 2.7 31 87-118 2-32 (699)
6 KOG0317 Predicted E3 ubiquitin 98.8 4.7E-09 1E-13 96.1 3.3 44 88-132 238-285 (293)
7 PLN03208 E3 ubiquitin-protein 98.7 4.7E-09 1E-13 91.9 2.9 44 88-132 17-80 (193)
8 KOG0287 Postreplication repair 98.7 6.9E-09 1.5E-13 96.4 1.8 60 88-148 22-87 (442)
9 KOG1840 Kinesin light chain [C 98.7 9.4E-07 2E-11 89.6 16.8 174 193-381 293-467 (508)
10 KOG0823 Predicted E3 ubiquitin 98.6 1.1E-08 2.4E-13 91.1 2.0 44 88-132 46-96 (230)
11 KOG2177 Predicted E3 ubiquitin 98.6 6.5E-08 1.4E-12 92.4 7.1 62 87-149 11-76 (386)
12 PF04564 U-box: U-box domain; 98.6 2.1E-08 4.7E-13 75.1 2.8 61 88-149 3-70 (73)
13 PF13424 TPR_12: Tetratricopep 98.6 3.5E-07 7.5E-12 69.2 9.4 77 273-356 2-78 (78)
14 PF14835 zf-RING_6: zf-RING of 98.6 2.5E-08 5.4E-13 70.8 2.5 54 89-143 7-65 (65)
15 PF13923 zf-C3HC4_2: Zinc fing 98.5 2.4E-08 5.2E-13 65.3 1.0 34 92-126 1-39 (39)
16 KOG0320 Predicted E3 ubiquitin 98.5 1E-07 2.2E-12 81.4 4.1 46 87-132 129-179 (187)
17 PF13920 zf-C3HC4_3: Zinc fing 98.4 6.6E-08 1.4E-12 66.9 1.0 43 89-132 2-49 (50)
18 PHA02929 N1R/p28-like protein; 98.4 1.1E-07 2.3E-12 86.9 1.3 50 88-137 173-233 (238)
19 PF13639 zf-RING_2: Ring finge 98.4 9E-08 1.9E-12 64.3 0.5 37 91-127 2-44 (44)
20 PF14634 zf-RING_5: zinc-RING 98.3 2.6E-07 5.6E-12 62.0 2.4 38 91-128 1-44 (44)
21 PF00097 zf-C3HC4: Zinc finger 98.3 2.4E-07 5.2E-12 61.1 1.2 34 92-126 1-41 (41)
22 COG5432 RAD18 RING-finger-cont 98.3 3.2E-07 6.9E-12 83.8 2.2 58 89-147 25-88 (391)
23 PHA02926 zinc finger-like prot 98.3 2.6E-07 5.6E-12 81.8 1.1 50 88-137 169-236 (242)
24 KOG2660 Locus-specific chromos 98.2 3.4E-07 7.4E-12 85.6 0.3 63 88-150 14-86 (331)
25 COG5574 PEX10 RING-finger-cont 98.2 6.5E-07 1.4E-11 81.3 1.7 44 88-132 214-263 (271)
26 KOG4626 O-linked N-acetylgluco 98.1 8E-06 1.7E-10 82.4 8.8 137 225-378 348-504 (966)
27 PF13445 zf-RING_UBOX: RING-ty 98.1 6.1E-07 1.3E-11 59.6 0.6 27 92-120 1-31 (43)
28 cd00162 RING RING-finger (Real 98.1 2.1E-06 4.6E-11 57.1 2.1 39 91-129 1-44 (45)
29 KOG2164 Predicted E3 ubiquitin 98.0 1.3E-06 2.9E-11 86.2 0.7 43 89-132 186-237 (513)
30 smart00184 RING Ring finger. E 98.0 2.9E-06 6.3E-11 54.5 1.2 34 92-126 1-39 (39)
31 KOG0311 Predicted E3 ubiquitin 97.9 1.2E-06 2.7E-11 82.4 -1.5 60 88-147 42-109 (381)
32 TIGR00570 cdk7 CDK-activating 97.9 1.2E-05 2.7E-10 75.7 4.2 58 89-146 3-75 (309)
33 KOG0804 Cytoplasmic Zn-finger 97.8 3E-05 6.6E-10 75.3 5.1 41 89-129 175-220 (493)
34 PF13424 TPR_12: Tetratricopep 97.7 0.00042 9.1E-09 52.0 9.4 77 228-308 2-78 (78)
35 KOG4159 Predicted E3 ubiquitin 97.6 3.8E-05 8.3E-10 75.4 3.2 63 87-150 82-155 (398)
36 KOG0978 E3 ubiquitin ligase in 97.5 1.8E-05 4E-10 81.9 -0.3 44 88-132 642-690 (698)
37 KOG1130 Predicted G-alpha GTPa 97.4 0.00098 2.1E-08 64.8 9.5 119 248-379 172-290 (639)
38 PF14938 SNAP: Soluble NSF att 97.4 0.0027 5.8E-08 60.4 12.3 106 235-354 79-185 (282)
39 KOG4626 O-linked N-acetylgluco 97.3 0.0021 4.5E-08 65.5 11.4 107 244-381 333-439 (966)
40 COG5152 Uncharacterized conser 97.3 9.8E-05 2.1E-09 64.1 1.7 54 89-143 196-254 (259)
41 KOG0824 Predicted E3 ubiquitin 97.3 0.00013 2.9E-09 67.6 2.1 49 90-139 8-62 (324)
42 CHL00033 ycf3 photosystem I as 97.2 0.014 3.1E-07 50.7 14.6 117 233-364 37-154 (168)
43 PF14938 SNAP: Soluble NSF att 97.2 0.0055 1.2E-07 58.2 12.6 126 239-378 43-169 (282)
44 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00014 2.9E-09 54.5 1.1 37 91-127 21-73 (73)
45 PF13374 TPR_10: Tetratricopep 97.2 0.00094 2E-08 43.4 5.0 39 323-361 1-41 (42)
46 COG5222 Uncharacterized conser 97.1 0.00048 1E-08 63.6 4.0 59 89-148 274-341 (427)
47 KOG1813 Predicted E3 ubiquitin 97.0 0.00038 8.3E-09 64.4 2.6 50 89-139 241-295 (313)
48 KOG4628 Predicted E3 ubiquitin 97.0 0.0003 6.5E-09 67.5 1.6 43 90-132 230-279 (348)
49 PRK02603 photosystem I assembl 97.0 0.024 5.3E-07 49.5 13.4 117 233-364 37-154 (172)
50 KOG1130 Predicted G-alpha GTPa 96.9 0.006 1.3E-07 59.5 9.7 111 235-358 199-309 (639)
51 KOG1173 Anaphase-promoting com 96.8 0.014 2.9E-07 59.1 11.5 120 233-376 416-535 (611)
52 KOG2879 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 60.8 3.0 46 87-132 237-288 (298)
53 PF13414 TPR_11: TPR repeat; P 96.7 0.009 2E-07 43.4 7.3 64 276-353 3-67 (69)
54 COG5540 RING-finger-containing 96.6 0.00094 2E-08 62.0 1.5 42 90-131 324-372 (374)
55 TIGR00990 3a0801s09 mitochondr 96.4 0.035 7.6E-07 58.7 12.2 29 277-305 468-496 (615)
56 KOG0802 E3 ubiquitin ligase [P 96.4 0.0013 2.9E-08 68.2 1.3 43 88-130 290-340 (543)
57 KOG0297 TNF receptor-associate 96.3 0.0025 5.5E-08 63.3 3.1 57 88-145 20-84 (391)
58 TIGR00990 3a0801s09 mitochondr 96.3 0.039 8.4E-07 58.3 12.0 91 236-351 370-460 (615)
59 CHL00033 ycf3 photosystem I as 96.2 0.11 2.3E-06 45.1 12.3 87 274-377 33-119 (168)
60 PF13176 TPR_7: Tetratricopept 96.2 0.015 3.2E-07 36.8 5.0 31 326-356 1-31 (36)
61 TIGR02521 type_IV_pilW type IV 96.1 0.12 2.6E-06 45.7 12.5 91 189-304 37-127 (234)
62 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0023 5E-08 61.0 1.0 44 87-130 285-344 (491)
63 KOG1039 Predicted E3 ubiquitin 95.9 0.0032 7E-08 60.8 1.3 46 87-132 159-222 (344)
64 PF11789 zf-Nse: Zinc-finger o 95.8 0.004 8.7E-08 44.0 1.2 36 89-125 11-53 (57)
65 KOG1002 Nucleotide excision re 95.8 0.0042 9E-08 61.8 1.6 66 49-132 513-587 (791)
66 PRK02603 photosystem I assembl 95.8 0.18 3.8E-06 44.0 11.7 89 273-378 32-120 (172)
67 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.12 2.7E-06 51.5 11.6 73 270-353 69-141 (453)
68 TIGR02521 type_IV_pilW type IV 95.7 0.19 4.2E-06 44.4 11.9 124 193-353 75-198 (234)
69 PF13432 TPR_16: Tetratricopep 95.6 0.097 2.1E-06 37.4 8.1 58 282-353 3-60 (65)
70 KOG4265 Predicted E3 ubiquitin 95.5 0.0053 1.2E-07 58.6 1.2 42 90-132 291-337 (349)
71 KOG0825 PHD Zn-finger protein 95.4 0.0064 1.4E-07 63.1 1.5 44 89-132 123-172 (1134)
72 PF13176 TPR_7: Tetratricopept 95.3 0.039 8.4E-07 34.9 4.4 32 278-309 1-32 (36)
73 KOG4185 Predicted E3 ubiquitin 95.2 0.14 3.1E-06 48.8 10.1 58 89-146 3-77 (296)
74 KOG1173 Anaphase-promoting com 95.2 0.04 8.6E-07 55.8 6.3 72 277-355 415-486 (611)
75 PRK11447 cellulose synthase su 95.2 0.31 6.8E-06 55.5 14.2 122 238-376 358-507 (1157)
76 KOG1126 DNA-binding cell divis 95.0 1.1 2.4E-05 46.4 15.9 90 278-381 491-608 (638)
77 PRK11447 cellulose synthase su 94.9 0.33 7.1E-06 55.3 13.2 122 231-373 303-428 (1157)
78 COG3063 PilF Tfp pilus assembl 94.9 0.29 6.3E-06 44.6 10.0 132 185-355 37-170 (250)
79 KOG4172 Predicted E3 ubiquitin 94.8 0.0032 6.8E-08 43.2 -1.9 42 90-132 8-55 (62)
80 PF14447 Prok-RING_4: Prokaryo 94.7 0.015 3.3E-07 40.2 1.3 41 90-131 8-50 (55)
81 PRK15359 type III secretion sy 94.7 1.5 3.2E-05 37.0 13.9 111 237-378 30-140 (144)
82 KOG1785 Tyrosine kinase negati 94.7 0.011 2.4E-07 56.9 0.8 42 90-132 370-417 (563)
83 KOG4739 Uncharacterized protei 94.7 0.021 4.5E-07 51.9 2.5 59 89-147 3-64 (233)
84 KOG0553 TPR repeat-containing 94.7 0.87 1.9E-05 43.0 13.2 120 227-377 77-196 (304)
85 PRK15359 type III secretion sy 94.6 0.16 3.4E-06 43.1 7.6 80 281-380 29-108 (144)
86 PF13374 TPR_10: Tetratricopep 94.6 0.095 2.1E-06 33.6 4.9 38 276-313 2-39 (42)
87 PF12861 zf-Apc11: Anaphase-pr 94.6 0.022 4.7E-07 43.4 1.9 40 92-131 35-82 (85)
88 PRK15179 Vi polysaccharide bio 94.3 0.61 1.3E-05 49.9 12.8 99 228-351 83-181 (694)
89 KOG4275 Predicted E3 ubiquitin 94.2 0.01 2.2E-07 55.0 -0.9 41 89-130 300-341 (350)
90 PRK11788 tetratricopeptide rep 94.1 0.98 2.1E-05 44.3 13.1 28 278-305 182-209 (389)
91 cd00189 TPR Tetratricopeptide 94.0 0.16 3.5E-06 37.2 5.8 92 237-353 6-97 (100)
92 KOG2376 Signal recognition par 94.0 0.67 1.5E-05 47.5 11.5 91 281-373 180-271 (652)
93 PRK15363 pathogenicity island 93.9 1.1 2.4E-05 38.5 11.2 117 235-379 39-155 (157)
94 PLN03088 SGT1, suppressor of 93.9 0.54 1.2E-05 46.3 10.7 109 240-379 11-119 (356)
95 KOG1645 RING-finger-containing 93.9 0.04 8.7E-07 53.5 2.6 43 90-132 5-57 (463)
96 PRK09782 bacteriophage N4 rece 93.8 1.1 2.4E-05 50.0 14.0 81 278-378 611-691 (987)
97 PF00515 TPR_1: Tetratricopept 93.8 0.18 4E-06 30.9 4.8 31 324-354 1-31 (34)
98 PRK11788 tetratricopeptide rep 93.8 1.6 3.4E-05 42.9 13.9 60 234-304 110-169 (389)
99 PRK11189 lipoprotein NlpI; Pro 93.7 0.51 1.1E-05 45.0 10.0 95 233-352 66-160 (296)
100 TIGR03302 OM_YfiO outer membra 93.6 0.95 2.1E-05 41.2 11.3 166 185-379 35-218 (235)
101 PRK15174 Vi polysaccharide exp 93.6 1.2 2.6E-05 47.6 13.4 61 277-351 285-345 (656)
102 PRK11189 lipoprotein NlpI; Pro 93.5 1.1 2.3E-05 42.9 11.7 80 276-375 64-143 (296)
103 KOG1125 TPR repeat-containing 93.3 0.17 3.6E-06 51.6 6.0 101 280-381 434-559 (579)
104 cd00189 TPR Tetratricopeptide 93.3 0.67 1.5E-05 33.7 8.2 79 279-377 3-81 (100)
105 KOG1734 Predicted RING-contain 93.3 0.052 1.1E-06 49.8 2.2 44 89-132 224-282 (328)
106 PF12862 Apc5: Anaphase-promot 93.2 1.2 2.6E-05 34.7 9.7 66 289-359 11-76 (94)
107 PRK10370 formate-dependent nit 93.2 0.57 1.2E-05 42.0 8.9 102 228-354 70-174 (198)
108 KOG1941 Acetylcholine receptor 93.2 1.9 4.1E-05 42.0 12.5 109 246-363 177-285 (518)
109 PF04641 Rtf2: Rtf2 RING-finge 93.1 0.15 3.3E-06 47.8 5.2 46 87-132 111-162 (260)
110 PRK04841 transcriptional regul 93.1 2.4 5.3E-05 46.8 15.4 109 237-356 497-605 (903)
111 PF13414 TPR_11: TPR repeat; P 93.0 0.44 9.6E-06 34.2 6.5 49 324-378 3-51 (69)
112 PF10952 DUF2753: Protein of u 92.8 4.7 0.0001 33.2 12.5 101 280-380 5-113 (140)
113 TIGR02917 PEP_TPR_lipo putativ 92.5 1.2 2.6E-05 48.1 11.8 85 278-375 705-815 (899)
114 PF13181 TPR_8: Tetratricopept 92.4 0.37 8.1E-06 29.4 4.7 30 325-354 2-31 (34)
115 KOG4692 Predicted E3 ubiquitin 92.4 0.065 1.4E-06 51.0 1.6 46 85-131 418-467 (489)
116 PRK15179 Vi polysaccharide bio 92.3 2.4 5.2E-05 45.5 13.4 104 226-354 115-218 (694)
117 PF07719 TPR_2: Tetratricopept 92.3 0.41 8.9E-06 29.0 4.8 30 324-353 1-30 (34)
118 PLN03088 SGT1, suppressor of 92.1 0.95 2.1E-05 44.5 9.5 81 280-380 6-86 (356)
119 TIGR02552 LcrH_SycD type III s 92.1 4.2 9.1E-05 33.1 12.2 98 232-354 18-115 (135)
120 KOG1155 Anaphase-promoting com 92.1 3.4 7.3E-05 41.5 12.9 67 277-357 433-499 (559)
121 KOG1585 Protein required for f 92.0 1.3 2.8E-05 40.9 9.3 67 282-357 77-143 (308)
122 KOG3039 Uncharacterized conser 91.9 0.11 2.3E-06 47.2 2.3 44 89-132 221-271 (303)
123 TIGR02795 tol_pal_ybgF tol-pal 91.7 1.2 2.6E-05 35.1 8.2 98 237-353 8-105 (119)
124 PF11793 FANCL_C: FANCL C-term 91.6 0.034 7.3E-07 41.1 -1.0 43 89-131 2-66 (70)
125 PRK15174 Vi polysaccharide exp 91.5 3 6.5E-05 44.6 13.2 80 278-377 248-331 (656)
126 KOG2002 TPR-containing nuclear 91.4 3.3 7.3E-05 45.0 12.9 93 278-380 416-512 (1018)
127 KOG2003 TPR repeat-containing 91.4 2 4.3E-05 42.9 10.4 81 277-377 525-605 (840)
128 PRK12370 invasion protein regu 91.3 1.9 4E-05 45.1 11.1 25 326-350 443-467 (553)
129 TIGR02552 LcrH_SycD type III s 91.2 1.5 3.3E-05 35.9 8.5 83 277-379 18-100 (135)
130 KOG2932 E3 ubiquitin ligase in 91.1 0.14 3.1E-06 48.0 2.3 41 89-129 90-132 (389)
131 KOG1586 Protein required for f 91.0 3.7 8E-05 37.7 11.0 29 279-307 116-145 (288)
132 KOG1001 Helicase-like transcri 90.9 0.086 1.9E-06 55.9 0.8 40 90-131 455-500 (674)
133 TIGR02917 PEP_TPR_lipo putativ 90.9 2.7 5.7E-05 45.4 12.3 90 275-377 124-240 (899)
134 PRK04841 transcriptional regul 90.8 4.9 0.00011 44.4 14.5 104 240-357 461-564 (903)
135 KOG0548 Molecular co-chaperone 90.6 2 4.4E-05 43.6 9.9 103 273-381 295-409 (539)
136 TIGR02795 tol_pal_ybgF tol-pal 90.5 2.4 5.3E-05 33.4 8.9 84 279-376 5-88 (119)
137 PF13371 TPR_9: Tetratricopept 90.3 1.3 2.8E-05 32.1 6.5 57 283-353 2-58 (73)
138 KOG3002 Zn finger protein [Gen 90.2 0.32 7E-06 46.4 3.9 61 85-146 44-105 (299)
139 PF00515 TPR_1: Tetratricopept 90.1 0.91 2E-05 27.6 4.8 29 277-305 2-30 (34)
140 KOG1941 Acetylcholine receptor 90.1 9 0.00019 37.5 13.3 74 276-357 246-324 (518)
141 PF09976 TPR_21: Tetratricopep 89.7 3 6.5E-05 35.0 9.2 92 237-351 54-145 (145)
142 PRK15363 pathogenicity island 89.5 4.4 9.6E-05 34.9 9.9 82 278-379 37-118 (157)
143 PF10516 SHNi-TPR: SHNi-TPR; 89.5 0.92 2E-05 29.1 4.4 35 277-311 2-36 (38)
144 KOG3161 Predicted E3 ubiquitin 89.5 0.15 3.3E-06 52.3 1.1 53 89-142 11-75 (861)
145 KOG1814 Predicted E3 ubiquitin 89.4 0.21 4.5E-06 48.8 1.9 32 89-120 184-217 (445)
146 PRK10803 tol-pal system protei 89.4 2.9 6.3E-05 39.3 9.6 79 285-377 152-230 (263)
147 PRK09782 bacteriophage N4 rece 89.3 3.8 8.2E-05 45.9 11.9 98 233-355 611-708 (987)
148 PF05290 Baculo_IE-1: Baculovi 88.6 0.18 4E-06 41.5 0.8 44 89-132 80-133 (140)
149 KOG1571 Predicted E3 ubiquitin 88.5 0.26 5.7E-06 47.4 1.9 44 88-132 304-348 (355)
150 PF09986 DUF2225: Uncharacteri 88.5 12 0.00026 34.0 12.7 98 274-376 116-213 (214)
151 PF12895 Apc3: Anaphase-promot 88.5 4.2 9E-05 30.5 8.4 82 245-350 3-84 (84)
152 PF07719 TPR_2: Tetratricopept 88.5 1.4 3.1E-05 26.5 4.8 29 277-305 2-30 (34)
153 KOG0547 Translocase of outer m 88.4 4.4 9.4E-05 41.0 10.3 109 231-357 462-570 (606)
154 PF06552 TOM20_plant: Plant sp 88.3 6.5 0.00014 34.6 10.2 81 296-380 4-85 (186)
155 PRK10370 formate-dependent nit 88.1 2.9 6.2E-05 37.4 8.4 84 277-379 74-159 (198)
156 PF12688 TPR_5: Tetratrico pep 88.1 2.4 5.1E-05 34.8 7.1 61 281-352 6-66 (120)
157 PRK10803 tol-pal system protei 88.1 2.2 4.7E-05 40.2 7.8 67 277-354 181-247 (263)
158 PF10516 SHNi-TPR: SHNi-TPR; 88.0 1.3 2.8E-05 28.5 4.3 32 326-357 3-34 (38)
159 PF14570 zf-RING_4: RING/Ubox 87.9 0.33 7.2E-06 32.8 1.6 39 92-130 1-47 (48)
160 KOG4555 TPR repeat-containing 87.7 3.4 7.4E-05 34.5 7.7 56 283-352 50-105 (175)
161 KOG3800 Predicted E3 ubiquitin 87.6 0.3 6.5E-06 45.6 1.6 42 91-132 2-52 (300)
162 PRK12370 invasion protein regu 87.5 2.4 5.1E-05 44.3 8.5 28 278-305 374-401 (553)
163 cd02682 MIT_AAA_Arch MIT: doma 87.4 3.6 7.8E-05 30.7 7.0 43 322-364 4-47 (75)
164 COG5236 Uncharacterized conser 87.4 0.53 1.2E-05 44.9 3.2 44 87-131 59-108 (493)
165 COG5010 TadD Flp pilus assembl 87.2 10 0.00023 35.2 11.4 82 278-379 136-217 (257)
166 PF13181 TPR_8: Tetratricopept 86.7 2 4.4E-05 25.9 4.7 29 278-306 3-31 (34)
167 PF13429 TPR_15: Tetratricopep 86.6 7.2 0.00016 36.5 10.6 47 328-380 218-264 (280)
168 KOG0543 FKBP-type peptidyl-pro 86.4 4.1 8.9E-05 40.2 8.7 97 274-376 206-303 (397)
169 COG5219 Uncharacterized conser 86.1 0.25 5.4E-06 52.9 0.3 43 89-131 1469-1523(1525)
170 PF13429 TPR_15: Tetratricopep 86.1 2.7 5.9E-05 39.4 7.4 62 280-355 218-279 (280)
171 KOG0828 Predicted E3 ubiquitin 86.1 0.31 6.8E-06 48.6 0.9 43 89-131 571-634 (636)
172 COG3063 PilF Tfp pilus assembl 85.9 6.9 0.00015 35.8 9.3 56 282-351 75-130 (250)
173 PF02891 zf-MIZ: MIZ/SP-RING z 85.7 0.25 5.4E-06 33.9 0.0 40 90-129 3-50 (50)
174 KOG4234 TPR repeat-containing 85.6 12 0.00025 33.8 10.4 35 273-307 92-126 (271)
175 TIGR03302 OM_YfiO outer membra 85.5 4.3 9.3E-05 36.8 8.2 62 279-351 169-230 (235)
176 PF09976 TPR_21: Tetratricopep 85.2 6.5 0.00014 33.0 8.6 84 278-379 50-133 (145)
177 TIGR00540 hemY_coli hemY prote 84.8 5.8 0.00012 39.7 9.4 67 278-359 337-405 (409)
178 KOG0827 Predicted E3 ubiquitin 84.8 0.32 7E-06 47.1 0.4 41 90-130 5-55 (465)
179 KOG2002 TPR-containing nuclear 84.2 17 0.00037 39.8 12.7 108 234-357 683-795 (1018)
180 PRK14720 transcript cleavage f 83.9 12 0.00026 41.2 11.8 132 232-375 117-268 (906)
181 KOG2003 TPR repeat-containing 83.8 3 6.5E-05 41.7 6.5 48 325-378 525-572 (840)
182 smart00744 RINGv The RING-vari 83.6 0.76 1.7E-05 31.3 1.7 37 91-127 1-49 (49)
183 KOG3617 WD40 and TPR repeat-co 83.6 16 0.00036 39.4 12.0 113 244-357 871-1000(1416)
184 cd05804 StaR_like StaR_like; a 83.5 5.8 0.00013 38.3 8.6 92 239-351 122-213 (355)
185 KOG3970 Predicted E3 ubiquitin 83.0 0.91 2E-05 40.8 2.4 41 91-131 52-105 (299)
186 KOG0826 Predicted E3 ubiquitin 83.0 1.2 2.5E-05 42.5 3.2 42 88-129 299-344 (357)
187 PF04212 MIT: MIT (microtubule 82.6 8.2 0.00018 28.0 7.1 36 322-357 3-38 (69)
188 KOG0553 TPR repeat-containing 82.3 12 0.00026 35.5 9.6 89 272-380 77-165 (304)
189 TIGR00540 hemY_coli hemY prote 82.2 30 0.00065 34.5 13.4 93 281-378 268-384 (409)
190 PF13428 TPR_14: Tetratricopep 82.2 3.5 7.6E-05 26.9 4.6 40 326-371 3-42 (44)
191 KOG1155 Anaphase-promoting com 81.4 13 0.00028 37.5 9.9 71 276-353 466-536 (559)
192 PF12895 Apc3: Anaphase-promot 81.3 5.2 0.00011 30.0 5.9 72 289-379 2-73 (84)
193 PF07191 zinc-ribbons_6: zinc- 81.2 0.24 5.1E-06 36.3 -1.6 40 89-133 1-43 (70)
194 KOG1493 Anaphase-promoting com 81.2 0.44 9.5E-06 35.3 -0.2 41 91-131 33-81 (84)
195 KOG0548 Molecular co-chaperone 81.1 5.8 0.00013 40.4 7.5 89 280-374 6-114 (539)
196 PF06552 TOM20_plant: Plant sp 80.9 17 0.00037 32.0 9.4 91 278-371 27-121 (186)
197 KOG1100 Predicted E3 ubiquitin 80.3 1.2 2.6E-05 40.3 2.2 40 92-132 161-201 (207)
198 KOG1126 DNA-binding cell divis 80.2 2.7 5.8E-05 43.7 4.9 90 237-351 427-516 (638)
199 PF14559 TPR_19: Tetratricopep 80.2 4.8 0.0001 28.5 5.1 60 288-367 3-62 (68)
200 KOG2817 Predicted E3 ubiquitin 80.0 0.94 2E-05 44.2 1.6 41 89-129 334-383 (394)
201 KOG4362 Transcriptional regula 79.8 0.57 1.2E-05 49.1 -0.0 43 89-132 21-70 (684)
202 smart00028 TPR Tetratricopepti 78.7 3.7 7.9E-05 23.0 3.5 28 326-353 3-30 (34)
203 KOG3039 Uncharacterized conser 78.2 1 2.2E-05 41.1 1.0 31 89-120 43-73 (303)
204 PF07800 DUF1644: Protein of u 78.1 0.95 2.1E-05 38.6 0.8 19 89-108 2-20 (162)
205 PF13174 TPR_6: Tetratricopept 77.9 4.3 9.4E-05 24.0 3.7 28 326-353 2-29 (33)
206 PF12862 Apc5: Anaphase-promot 77.1 29 0.00063 26.8 9.0 81 244-334 11-91 (94)
207 KOG2114 Vacuolar assembly/sort 76.8 1.5 3.3E-05 46.8 2.0 42 88-129 839-881 (933)
208 COG4783 Putative Zn-dependent 76.6 53 0.0012 33.3 12.6 104 234-355 343-456 (484)
209 KOG1129 TPR repeat-containing 76.4 8.9 0.00019 37.0 6.8 22 237-258 229-250 (478)
210 PF09986 DUF2225: Uncharacteri 76.2 20 0.00043 32.6 8.9 82 291-379 92-180 (214)
211 KOG1812 Predicted E3 ubiquitin 75.9 2.1 4.5E-05 42.6 2.7 58 89-147 146-223 (384)
212 KOG0547 Translocase of outer m 75.8 12 0.00025 38.1 7.7 84 272-375 111-194 (606)
213 cd02683 MIT_1 MIT: domain cont 75.5 26 0.00057 26.2 8.0 39 323-361 5-44 (77)
214 PF12688 TPR_5: Tetratrico pep 75.4 23 0.0005 28.9 8.4 94 240-352 10-103 (120)
215 PRK10049 pgaA outer membrane p 75.3 29 0.00064 37.8 11.6 86 279-375 313-404 (765)
216 PF10602 RPN7: 26S proteasome 75.2 34 0.00074 30.0 10.0 75 271-356 31-105 (177)
217 PRK10747 putative protoheme IX 74.6 18 0.00038 36.1 9.0 61 279-354 331-391 (398)
218 PF08631 SPO22: Meiosis protei 74.5 33 0.00072 32.3 10.4 63 288-356 5-68 (278)
219 PHA03096 p28-like protein; Pro 74.2 1.2 2.5E-05 42.3 0.4 31 90-120 179-216 (284)
220 cd02656 MIT MIT: domain contai 74.0 32 0.0007 25.2 8.4 35 323-357 5-39 (75)
221 KOG2796 Uncharacterized conser 73.6 55 0.0012 30.9 11.0 56 296-357 190-245 (366)
222 KOG1952 Transcription factor N 73.3 4.5 9.7E-05 43.4 4.4 44 88-131 190-247 (950)
223 PF13432 TPR_16: Tetratricopep 73.3 4.8 0.0001 28.3 3.4 44 330-379 3-46 (65)
224 cd05804 StaR_like StaR_like; a 73.1 13 0.00028 35.8 7.6 67 275-355 113-179 (355)
225 PRK10866 outer membrane biogen 73.0 25 0.00053 32.6 8.9 77 283-373 39-115 (243)
226 KOG2077 JNK/SAPK-associated pr 72.5 45 0.00098 34.5 10.9 82 305-386 376-458 (832)
227 KOG2076 RNA polymerase III tra 72.1 87 0.0019 34.2 13.5 126 190-354 146-271 (895)
228 smart00502 BBC B-Box C-termina 72.1 48 0.0011 26.4 9.9 49 330-378 74-122 (127)
229 PRK10049 pgaA outer membrane p 71.9 45 0.00098 36.3 12.0 109 233-373 51-159 (765)
230 COG5220 TFB3 Cdk activating ki 71.7 1.2 2.6E-05 40.4 -0.1 44 89-132 10-65 (314)
231 PF04100 Vps53_N: Vps53-like, 71.5 66 0.0014 32.0 12.0 99 263-373 68-169 (383)
232 KOG4555 TPR repeat-containing 71.2 62 0.0013 27.3 10.3 122 233-375 45-172 (175)
233 COG1729 Uncharacterized protei 71.1 18 0.00038 33.9 7.3 69 275-354 177-245 (262)
234 PRK10153 DNA-binding transcrip 70.8 18 0.00039 37.6 8.2 60 279-353 423-482 (517)
235 COG4235 Cytochrome c biogenesi 70.7 36 0.00078 32.3 9.4 101 228-353 153-256 (287)
236 PRK14720 transcript cleavage f 70.1 15 0.00032 40.6 7.5 62 278-354 118-179 (906)
237 cd02678 MIT_VPS4 MIT: domain c 69.4 43 0.00092 24.7 7.9 35 323-357 5-39 (75)
238 KOG0543 FKBP-type peptidyl-pro 67.2 48 0.001 32.9 9.7 120 233-372 210-333 (397)
239 PF05883 Baculo_RING: Baculovi 67.1 2 4.3E-05 35.8 0.2 32 89-120 26-65 (134)
240 PF13428 TPR_14: Tetratricopep 66.6 16 0.00034 23.7 4.5 28 278-305 3-30 (44)
241 KOG3579 Predicted E3 ubiquitin 66.5 6.9 0.00015 36.6 3.6 34 86-120 265-302 (352)
242 COG3071 HemY Uncharacterized e 66.3 17 0.00036 35.9 6.3 61 278-353 330-390 (400)
243 PF13525 YfiO: Outer membrane 66.3 96 0.0021 27.5 12.9 165 186-379 8-193 (203)
244 PRK10747 putative protoheme IX 66.2 72 0.0016 31.7 11.3 73 281-353 268-357 (398)
245 cd02681 MIT_calpain7_1 MIT: do 66.1 53 0.0012 24.5 8.4 36 322-357 4-39 (76)
246 COG5194 APC11 Component of SCF 65.7 2.6 5.6E-05 31.6 0.6 25 107-131 53-81 (88)
247 COG1382 GimC Prefoldin, chaper 65.7 74 0.0016 26.0 10.2 64 324-388 53-118 (119)
248 PF10367 Vps39_2: Vacuolar sor 64.8 2.8 6.1E-05 33.1 0.7 32 88-119 77-109 (109)
249 COG5010 TadD Flp pilus assembl 64.6 30 0.00064 32.2 7.4 76 280-375 104-179 (257)
250 KOG3617 WD40 and TPR repeat-co 64.4 2.1E+02 0.0046 31.5 14.2 71 287-357 869-945 (1416)
251 KOG0298 DEAD box-containing he 64.1 1.8 3.9E-05 48.3 -0.7 45 88-132 1152-1200(1394)
252 PLN03098 LPA1 LOW PSII ACCUMUL 64.0 20 0.00042 36.3 6.5 53 321-379 72-127 (453)
253 PF13371 TPR_9: Tetratricopept 64.0 16 0.00035 26.1 4.7 44 331-380 2-45 (73)
254 COG2976 Uncharacterized protei 64.0 79 0.0017 28.4 9.6 24 331-354 166-189 (207)
255 KOG2076 RNA polymerase III tra 63.8 26 0.00056 38.1 7.6 85 278-381 416-500 (895)
256 smart00745 MIT Microtubule Int 63.8 56 0.0012 24.0 8.8 36 322-357 6-41 (77)
257 PF12569 NARP1: NMDA receptor- 62.5 81 0.0018 32.7 11.0 32 328-359 309-340 (517)
258 cd02684 MIT_2 MIT: domain cont 62.3 54 0.0012 24.3 7.2 34 324-357 6-39 (75)
259 KOG4445 Uncharacterized conser 62.3 1.5 3.3E-05 41.2 -1.5 31 90-120 116-148 (368)
260 KOG2908 26S proteasome regulat 62.2 75 0.0016 30.9 9.7 79 289-375 88-167 (380)
261 COG2976 Uncharacterized protei 61.3 86 0.0019 28.1 9.3 28 330-357 158-185 (207)
262 KOG1125 TPR repeat-containing 61.3 52 0.0011 34.1 9.0 53 295-354 442-494 (579)
263 PF13431 TPR_17: Tetratricopep 61.1 14 0.00031 22.7 3.3 21 324-344 13-33 (34)
264 COG5109 Uncharacterized conser 60.8 4.5 9.9E-05 38.3 1.4 40 89-128 336-384 (396)
265 PF13174 TPR_6: Tetratricopept 60.2 18 0.00038 21.2 3.6 28 278-305 2-29 (33)
266 KOG3785 Uncharacterized conser 60.2 53 0.0011 32.2 8.4 85 194-302 33-117 (557)
267 PF07721 TPR_4: Tetratricopept 60.2 13 0.00027 21.3 2.8 24 326-349 3-26 (26)
268 KOG2376 Signal recognition par 60.0 2.3E+02 0.005 29.8 13.5 72 283-357 117-208 (652)
269 KOG2034 Vacuolar sorting prote 59.5 3 6.5E-05 44.9 -0.0 32 89-120 817-849 (911)
270 PF13525 YfiO: Outer membrane 59.5 1.2E+02 0.0026 26.9 10.4 79 281-373 10-88 (203)
271 KOG3616 Selective LIM binding 59.0 16 0.00035 39.0 5.0 71 237-307 667-737 (1636)
272 PRK14574 hmsH outer membrane p 58.5 61 0.0013 35.7 9.7 21 189-209 40-60 (822)
273 COG5175 MOT2 Transcriptional r 58.4 7.2 0.00016 37.4 2.2 43 90-132 15-65 (480)
274 COG2956 Predicted N-acetylgluc 57.8 64 0.0014 31.3 8.4 21 330-350 220-240 (389)
275 cd02680 MIT_calpain7_2 MIT: do 57.7 46 0.00099 24.8 6.0 33 325-357 7-39 (75)
276 KOG1118 Lysophosphatidic acid 57.1 1.1E+02 0.0024 29.2 9.7 55 291-357 177-231 (366)
277 PF04136 Sec34: Sec34-like fam 56.5 1E+02 0.0022 26.5 8.9 40 340-379 68-113 (157)
278 KOG4648 Uncharacterized conser 56.1 54 0.0012 32.1 7.7 93 280-372 101-207 (536)
279 KOG1940 Zn-finger protein [Gen 55.8 8.3 0.00018 36.3 2.2 40 89-128 158-204 (276)
280 KOG2930 SCF ubiquitin ligase, 55.5 4 8.7E-05 32.1 0.1 23 107-129 80-106 (114)
281 TIGR00996 Mtu_fam_mce virulenc 55.5 74 0.0016 30.0 8.8 48 337-384 229-278 (291)
282 KOG1129 TPR repeat-containing 54.9 79 0.0017 30.8 8.5 27 279-305 226-252 (478)
283 PRK14574 hmsH outer membrane p 53.9 1.2E+02 0.0025 33.6 10.9 16 329-344 141-156 (822)
284 KOG0624 dsRNA-activated protei 52.8 1.2E+02 0.0025 29.9 9.3 45 238-286 196-240 (504)
285 KOG0624 dsRNA-activated protei 52.6 1.2E+02 0.0026 29.8 9.3 28 277-304 107-134 (504)
286 COG2956 Predicted N-acetylgluc 52.5 37 0.00081 32.8 6.0 60 282-354 220-279 (389)
287 PF10475 DUF2450: Protein of u 51.3 1.5E+02 0.0033 28.0 10.2 21 337-357 140-160 (291)
288 PF08631 SPO22: Meiosis protei 51.1 2.1E+02 0.0046 26.7 14.2 108 243-357 5-113 (278)
289 PF10579 Rapsyn_N: Rapsyn N-te 51.1 1.1E+02 0.0023 23.2 8.0 60 288-358 18-77 (80)
290 KOG3616 Selective LIM binding 50.6 3.7E+02 0.008 29.3 15.0 69 279-357 664-739 (1636)
291 PF10272 Tmpp129: Putative tra 50.2 7.5 0.00016 38.1 1.0 24 108-131 311-351 (358)
292 PF04184 ST7: ST7 protein; In 49.4 54 0.0012 33.6 6.8 93 291-387 215-324 (539)
293 KOG2169 Zn-finger transcriptio 49.4 12 0.00026 39.8 2.5 57 89-148 306-375 (636)
294 COG1516 FliS Flagellin-specifi 49.1 94 0.002 25.9 7.1 58 322-379 29-89 (132)
295 PF03704 BTAD: Bacterial trans 48.9 1.4E+02 0.003 24.6 8.6 85 287-377 17-109 (146)
296 PF10571 UPF0547: Uncharacteri 48.0 10 0.00022 22.1 0.9 7 92-98 3-9 (26)
297 COG0497 RecN ATPase involved i 47.7 2.4E+02 0.0053 29.5 11.4 86 272-357 187-281 (557)
298 smart00101 14_3_3 14-3-3 homol 47.2 1.5E+02 0.0032 27.6 9.0 78 292-374 144-227 (244)
299 PLN03077 Protein ECB2; Provisi 47.1 3.1E+02 0.0067 30.2 13.2 53 286-350 599-651 (857)
300 PF10602 RPN7: 26S proteasome 47.0 37 0.0008 29.7 4.9 33 322-354 34-66 (177)
301 PF12063 DUF3543: Domain of un 46.9 2.4E+02 0.0052 26.1 13.1 39 319-357 160-199 (238)
302 KOG1464 COP9 signalosome, subu 46.8 1.5E+02 0.0033 28.1 8.8 63 246-315 42-104 (440)
303 KOG2796 Uncharacterized conser 46.5 2.7E+02 0.0057 26.5 11.7 97 278-377 214-336 (366)
304 KOG1174 Anaphase-promoting com 46.5 53 0.0012 32.9 6.1 27 327-353 474-500 (564)
305 TIGR03504 FimV_Cterm FimV C-te 46.4 38 0.00081 22.4 3.6 24 329-352 4-27 (44)
306 PF03704 BTAD: Bacterial trans 46.3 1.6E+02 0.0036 24.1 13.3 76 273-362 59-135 (146)
307 cd02677 MIT_SNX15 MIT: domain 46.3 1.2E+02 0.0026 22.5 7.1 34 324-357 6-39 (75)
308 PRK04023 DNA polymerase II lar 46.1 21 0.00046 39.4 3.7 45 87-132 624-675 (1121)
309 KOG1815 Predicted E3 ubiquitin 45.4 10 0.00022 38.5 1.2 33 88-120 69-101 (444)
310 PF15556 Zwint: ZW10 interacto 45.3 2.3E+02 0.005 25.4 10.2 54 248-301 59-112 (252)
311 KOG4234 TPR repeat-containing 45.2 2.2E+02 0.0049 25.9 9.3 92 242-353 106-197 (271)
312 cd02679 MIT_spastin MIT: domai 45.1 65 0.0014 24.3 5.2 36 322-357 6-41 (79)
313 PF04733 Coatomer_E: Coatomer 45.0 78 0.0017 30.1 7.1 50 325-380 202-251 (290)
314 PF13779 DUF4175: Domain of un 44.7 3.6E+02 0.0078 29.8 12.8 74 283-357 492-573 (820)
315 KOG1839 Uncharacterized protei 43.8 62 0.0013 36.8 6.9 104 271-380 968-1073(1236)
316 PF07975 C1_4: TFIIH C1-like d 43.5 21 0.00045 24.5 2.1 24 104-127 23-50 (51)
317 PF03491 5HT_transporter: Sero 43.3 29 0.00062 22.4 2.5 22 9-30 7-28 (42)
318 KOG3268 Predicted E3 ubiquitin 42.7 15 0.00034 31.9 1.7 41 91-132 167-229 (234)
319 PRK10941 hypothetical protein; 42.6 2.8E+02 0.0062 26.1 10.3 84 271-371 176-259 (269)
320 KOG1464 COP9 signalosome, subu 42.3 2.6E+02 0.0055 26.7 9.6 58 290-357 41-98 (440)
321 KOG4340 Uncharacterized conser 42.3 65 0.0014 30.9 5.8 25 327-351 147-171 (459)
322 KOG1128 Uncharacterized conser 42.1 1.4E+02 0.003 32.1 8.7 66 288-353 497-582 (777)
323 KOG0994 Extracellular matrix g 42.0 6E+02 0.013 29.3 14.3 17 369-385 1334-1350(1758)
324 KOG0545 Aryl-hydrocarbon recep 41.6 88 0.0019 29.3 6.4 42 328-369 182-225 (329)
325 KOG1586 Protein required for f 41.5 1.8E+02 0.0038 27.1 8.2 33 277-309 35-67 (288)
326 TIGR02302 aProt_lowcomp conser 41.1 2.3E+02 0.005 31.3 10.6 73 284-357 524-603 (851)
327 PRK15331 chaperone protein Sic 40.8 1.8E+02 0.0039 25.3 7.9 107 242-380 48-154 (165)
328 PF10497 zf-4CXXC_R1: Zinc-fin 40.4 16 0.00036 29.1 1.4 20 109-128 37-69 (105)
329 KOG2180 Late Golgi protein sor 40.3 4.2E+02 0.0091 28.6 11.7 36 337-372 145-183 (793)
330 PF09295 ChAPs: ChAPs (Chs5p-A 39.8 2.9E+02 0.0064 27.6 10.4 23 326-348 236-258 (395)
331 PF04124 Dor1: Dor1-like famil 39.3 2.7E+02 0.0058 27.0 10.0 26 332-357 114-139 (338)
332 PLN03218 maturation of RBCL 1; 39.0 3E+02 0.0065 31.4 11.5 27 325-351 720-746 (1060)
333 PF14559 TPR_19: Tetratricopep 38.9 56 0.0012 22.7 4.0 38 337-380 4-41 (68)
334 KOG0508 Ankyrin repeat protein 38.6 66 0.0014 32.7 5.5 103 278-389 300-404 (615)
335 PF03854 zf-P11: P-11 zinc fin 38.4 15 0.00032 24.8 0.7 30 102-131 12-46 (50)
336 KOG3899 Uncharacterized conser 38.4 10 0.00022 35.7 -0.1 25 108-132 325-366 (381)
337 PF06906 DUF1272: Protein of u 38.0 20 0.00044 25.0 1.4 22 110-131 29-52 (57)
338 PRK05685 fliS flagellar protei 37.8 2.3E+02 0.0051 23.4 8.3 50 331-380 42-94 (132)
339 COG3813 Uncharacterized protei 37.2 25 0.00054 25.8 1.7 24 109-132 28-53 (84)
340 cd07625 BAR_Vps17p The Bin/Amp 37.1 2.9E+02 0.0064 25.4 9.2 11 200-210 59-69 (230)
341 KOG4162 Predicted calmodulin-b 36.5 2.1E+02 0.0046 30.9 9.0 29 276-304 684-712 (799)
342 TIGR00622 ssl1 transcription f 36.4 38 0.00083 27.4 2.9 37 91-127 57-110 (112)
343 cd02683 MIT_1 MIT: domain cont 36.1 1.8E+02 0.0039 21.6 7.8 30 286-315 16-45 (77)
344 PF02561 FliS: Flagellar prote 36.1 2.3E+02 0.005 22.9 8.4 49 332-380 37-88 (122)
345 COG1729 Uncharacterized protei 36.0 1.8E+02 0.004 27.2 7.8 77 288-378 153-229 (262)
346 PF12854 PPR_1: PPR repeat 35.9 85 0.0018 19.1 3.9 27 324-350 7-33 (34)
347 PF13041 PPR_2: PPR repeat fam 35.3 91 0.002 20.5 4.4 27 325-351 4-30 (50)
348 PRK10869 recombination and rep 34.8 5.5E+02 0.012 26.9 12.0 16 366-381 301-316 (553)
349 PHA02825 LAP/PHD finger-like p 34.8 35 0.00076 29.3 2.6 43 88-132 7-60 (162)
350 COG4942 Membrane-bound metallo 34.4 4.6E+02 0.0099 26.4 10.6 30 272-301 44-73 (420)
351 PF04652 DUF605: Vta1 like; I 34.3 4.1E+02 0.0089 26.0 10.7 24 267-290 38-61 (380)
352 cd00065 FYVE FYVE domain; Zinc 34.2 24 0.00052 24.2 1.3 30 91-120 4-36 (57)
353 KOG2789 Putative Zn-finger pro 34.0 20 0.00043 35.2 1.1 31 90-120 75-106 (482)
354 KOG3807 Predicted membrane pro 34.0 3E+02 0.0066 26.9 8.9 60 328-387 279-340 (556)
355 KOG1839 Uncharacterized protei 33.9 2.1E+02 0.0046 32.8 9.0 71 281-357 1020-1090(1236)
356 PF00244 14-3-3: 14-3-3 protei 33.4 3.3E+02 0.0072 24.9 9.1 58 292-354 142-199 (236)
357 PRK06975 bifunctional uroporph 33.4 6.4E+02 0.014 27.1 13.9 80 272-357 377-457 (656)
358 PF09295 ChAPs: ChAPs (Chs5p-A 33.1 3.5E+02 0.0076 27.1 9.8 58 277-348 235-292 (395)
359 PF11172 DUF2959: Protein of u 32.7 3.1E+02 0.0068 24.6 8.2 37 271-307 40-77 (201)
360 PF11817 Foie-gras_1: Foie gra 32.6 3.7E+02 0.0081 24.6 9.4 76 293-377 155-231 (247)
361 KOG1156 N-terminal acetyltrans 32.0 1.4E+02 0.0031 31.5 6.9 76 298-373 22-118 (700)
362 PF15290 Syntaphilin: Golgi-lo 31.5 4.6E+02 0.0099 24.9 9.7 24 264-287 73-96 (305)
363 PF12968 DUF3856: Domain of Un 31.4 3E+02 0.0066 22.8 9.2 75 280-357 59-133 (144)
364 KOG0994 Extracellular matrix g 31.4 7.4E+02 0.016 28.6 12.2 22 363-384 1733-1754(1758)
365 PF04910 Tcf25: Transcriptiona 31.3 2.8E+02 0.0061 27.3 8.7 60 291-357 9-73 (360)
366 PF08969 USP8_dimer: USP8 dime 31.2 96 0.0021 24.9 4.6 42 321-362 35-76 (115)
367 PF06844 DUF1244: Protein of u 31.1 16 0.00035 26.4 -0.0 10 111-120 11-20 (68)
368 KOG1428 Inhibitor of type V ad 31.0 41 0.00089 38.9 2.9 44 89-132 3486-3545(3738)
369 KOG0517 Beta-spectrin [Cytoske 30.8 1.1E+03 0.023 29.0 14.0 127 248-378 1513-1678(2473)
370 KOG3113 Uncharacterized conser 30.8 41 0.0009 31.1 2.5 45 88-132 110-159 (293)
371 KOG3726 Uncharacterized conser 30.7 24 0.00052 37.2 1.1 38 90-128 655-697 (717)
372 PF04100 Vps53_N: Vps53-like, 30.5 3.5E+02 0.0076 26.9 9.3 9 379-387 148-156 (383)
373 smart00064 FYVE Protein presen 30.4 30 0.00065 24.8 1.3 31 90-120 11-44 (68)
374 PF01485 IBR: IBR domain; Int 30.1 14 0.00031 25.8 -0.4 30 91-120 20-58 (64)
375 PF02259 FAT: FAT domain; Int 30.1 4.8E+02 0.01 24.6 10.9 34 186-219 32-65 (352)
376 KOG0976 Rho/Rac1-interacting s 30.1 2.5E+02 0.0054 30.6 8.3 28 330-357 402-429 (1265)
377 PF15449 Retinal: Retinal prot 30.1 3.3E+02 0.0071 30.8 9.3 54 338-392 297-352 (1287)
378 COG4783 Putative Zn-dependent 30.0 3.2E+02 0.007 27.9 8.8 81 280-381 344-425 (484)
379 KOG0550 Molecular chaperone (D 29.8 72 0.0016 31.9 4.1 93 278-377 205-300 (486)
380 cd00350 rubredoxin_like Rubred 29.6 48 0.001 20.3 1.9 11 119-129 16-26 (33)
381 PF10235 Cript: Microtubule-as 29.1 36 0.00077 26.4 1.6 36 90-131 45-80 (90)
382 PF01535 PPR: PPR repeat; Int 28.9 99 0.0021 17.4 3.3 27 326-352 2-28 (31)
383 KOG1915 Cell cycle control pro 28.6 4.9E+02 0.011 26.9 9.7 19 339-357 571-589 (677)
384 KOG1585 Protein required for f 28.1 5.1E+02 0.011 24.4 10.4 37 320-356 67-103 (308)
385 TIGR03042 PS_II_psbQ_bact phot 28.0 2.7E+02 0.0059 23.5 6.8 34 323-357 104-137 (142)
386 PHA02862 5L protein; Provision 27.7 40 0.00086 28.5 1.7 40 91-132 4-54 (156)
387 PF13512 TPR_18: Tetratricopep 27.4 3.8E+02 0.0082 22.6 8.0 76 284-373 18-93 (142)
388 COG5242 TFB4 RNA polymerase II 27.4 29 0.00063 31.5 0.9 20 86-106 257-276 (296)
389 PF08746 zf-RING-like: RING-li 27.3 40 0.00087 22.1 1.4 35 92-126 1-43 (43)
390 COG0068 HypF Hydrogenase matur 27.3 65 0.0014 34.4 3.6 44 89-132 101-185 (750)
391 PRK11088 rrmA 23S rRNA methylt 27.0 30 0.00065 32.4 1.1 23 90-112 3-27 (272)
392 cd07621 BAR_SNX5_6 The Bin/Amp 27.0 4.2E+02 0.0091 24.2 8.4 30 275-304 40-69 (219)
393 PRK14714 DNA polymerase II lar 26.7 63 0.0014 36.9 3.5 58 88-146 666-740 (1337)
394 KOG0825 PHD Zn-finger protein 26.7 35 0.00077 36.6 1.5 26 107-132 120-155 (1134)
395 PF11593 Med3: Mediator comple 26.3 88 0.0019 30.7 4.0 20 370-389 74-93 (379)
396 PF05600 DUF773: Protein of un 26.2 7.5E+02 0.016 25.7 13.5 119 235-355 84-215 (507)
397 PRK03947 prefoldin subunit alp 26.1 1E+02 0.0022 25.6 4.1 20 338-357 90-109 (140)
398 cd07623 BAR_SNX1_2 The Bin/Amp 26.0 4.6E+02 0.0099 23.8 8.6 110 268-386 21-134 (224)
399 KOG2047 mRNA splicing factor [ 25.8 2E+02 0.0043 30.7 6.6 95 245-351 350-452 (835)
400 COG4700 Uncharacterized protei 25.7 5E+02 0.011 23.4 8.7 20 239-258 97-116 (251)
401 PLN03218 maturation of RBCL 1; 25.7 4.9E+02 0.011 29.8 10.4 27 326-352 756-782 (1060)
402 smart00647 IBR In Between Ring 25.1 20 0.00044 25.1 -0.4 14 107-120 45-58 (64)
403 PF04423 Rad50_zn_hook: Rad50 25.1 57 0.0012 22.3 1.9 11 122-132 22-32 (54)
404 PF05053 Menin: Menin; InterP 25.1 8E+02 0.017 25.9 10.7 118 226-357 229-351 (618)
405 PF12753 Nro1: Nuclear pore co 24.9 2.5E+02 0.0055 28.0 7.0 59 295-357 330-388 (404)
406 TIGR00756 PPR pentatricopeptid 24.9 1.5E+02 0.0031 16.9 3.9 25 327-351 3-27 (35)
407 PF14853 Fis1_TPR_C: Fis1 C-te 24.8 2E+02 0.0044 19.7 4.6 45 326-376 3-47 (53)
408 PLN03223 Polycystin cation cha 24.6 7.9E+02 0.017 28.9 11.3 86 272-357 777-870 (1634)
409 KOG2807 RNA polymerase II tran 24.5 47 0.001 31.9 1.8 40 89-128 330-375 (378)
410 cd07661 BAR_ICA69 The Bin/Amph 24.5 1.9E+02 0.0041 25.9 5.4 40 332-371 99-140 (204)
411 cd00280 TRFH Telomeric Repeat 24.3 5.1E+02 0.011 23.1 8.0 29 320-348 105-135 (200)
412 PF10300 DUF3808: Protein of u 24.2 7.7E+02 0.017 25.1 12.1 79 279-370 308-395 (468)
413 TIGR00634 recN DNA repair prot 24.2 5.8E+02 0.013 26.7 10.1 33 269-301 185-220 (563)
414 PF09304 Cortex-I_coil: Cortex 24.2 3.8E+02 0.0082 21.5 7.3 45 263-307 6-50 (107)
415 PF08910 Aida_N: Aida N-termin 24.0 3.3E+02 0.007 21.8 6.1 44 290-334 19-62 (106)
416 cd00021 BBOX B-Box-type zinc f 24.0 5 0.00011 25.2 -3.4 14 226-239 2-16 (39)
417 KOG1451 Oligophrenin-1 and rel 23.9 2.3E+02 0.0051 29.7 6.6 33 275-307 36-68 (812)
418 PF13812 PPR_3: Pentatricopept 23.8 1.6E+02 0.0034 17.0 4.2 27 326-352 3-29 (34)
419 PF12569 NARP1: NMDA receptor- 23.7 3E+02 0.0064 28.6 7.7 54 285-352 13-66 (517)
420 PF10498 IFT57: Intra-flagella 23.7 7.1E+02 0.015 24.5 10.5 25 124-148 54-82 (359)
421 PF14561 TPR_20: Tetratricopep 23.3 3.4E+02 0.0074 20.7 8.2 23 325-347 23-45 (90)
422 TIGR00208 fliS flagellar biosy 23.3 4.1E+02 0.009 21.6 8.4 48 333-380 40-90 (124)
423 PRK10866 outer membrane biogen 23.3 5.8E+02 0.013 23.3 12.8 56 242-305 43-98 (243)
424 KOG0550 Molecular chaperone (D 23.2 3.5E+02 0.0076 27.3 7.5 23 331-353 328-350 (486)
425 PF04048 Sec8_exocyst: Sec8 ex 23.0 3.5E+02 0.0076 22.6 6.8 15 343-357 115-129 (142)
426 KOG1127 TPR repeat-containing 22.9 4.8E+02 0.01 29.5 9.0 73 281-360 635-707 (1238)
427 cd07624 BAR_SNX7_30 The Bin/Am 22.9 5E+02 0.011 23.0 8.2 14 291-304 46-59 (200)
428 KOG4340 Uncharacterized conser 22.8 1.7E+02 0.0037 28.2 5.1 63 277-353 145-207 (459)
429 KOG1070 rRNA processing protei 22.6 2.4E+02 0.0051 32.9 6.9 77 279-355 1459-1561(1710)
430 PF10267 Tmemb_cc2: Predicted 22.4 3.6E+02 0.0078 27.0 7.6 28 328-355 290-318 (395)
431 PF12968 DUF3856: Domain of Un 22.4 4.6E+02 0.0099 21.8 11.2 73 289-363 22-95 (144)
432 PF04216 FdhE: Protein involve 22.3 22 0.00048 33.8 -0.8 39 90-129 173-220 (290)
433 KOG3993 Transcription factor ( 22.3 56 0.0012 32.5 1.9 42 86-131 264-306 (500)
434 cd07660 BAR_Arfaptin The Bin/A 22.2 2.6E+02 0.0057 25.1 6.0 17 341-357 137-153 (201)
435 PRK10807 paraquat-inducible pr 22.1 4E+02 0.0088 27.9 8.3 17 269-285 416-432 (547)
436 TIGR00293 prefoldin, archaeal 22.1 1.1E+02 0.0023 25.0 3.3 35 275-309 8-42 (126)
437 KOG1815 Predicted E3 ubiquitin 22.1 49 0.0011 33.6 1.5 27 102-128 178-207 (444)
438 KOG3060 Uncharacterized conser 21.8 6.8E+02 0.015 23.6 10.4 45 328-378 158-202 (289)
439 COG4235 Cytochrome c biogenesi 21.7 4E+02 0.0086 25.4 7.4 27 279-305 159-185 (287)
440 cd00890 Prefoldin Prefoldin is 21.5 93 0.002 25.1 2.9 36 275-310 8-43 (129)
441 PF04108 APG17: Autophagy prot 21.2 3.3E+02 0.0071 27.3 7.3 117 262-379 251-374 (412)
442 PRK04778 septation ring format 21.1 9.7E+02 0.021 25.1 12.8 24 334-357 187-210 (569)
443 PF14446 Prok-RING_1: Prokaryo 20.9 92 0.002 21.7 2.2 40 90-129 6-50 (54)
444 cd02682 MIT_AAA_Arch MIT: doma 20.7 3.7E+02 0.0079 20.0 7.6 30 287-316 17-46 (75)
445 KOG0796 Spliceosome subunit [R 20.7 4.5E+02 0.0099 25.3 7.5 50 336-385 143-200 (319)
446 PLN03081 pentatricopeptide (PP 20.4 1.9E+02 0.0041 31.1 5.7 27 325-351 392-418 (697)
447 COG1730 GIM5 Predicted prefold 20.1 1.7E+02 0.0038 24.8 4.2 87 271-357 11-109 (145)
448 cd07603 BAR_ACAPs The Bin/Amph 20.0 6.2E+02 0.014 22.6 8.1 26 332-357 102-127 (200)
No 1
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.06 E-value=4.1e-11 Score=79.52 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=27.9
Q ss_pred ccccccccccCceeccccCcchHHhHhcCC--------CCCCC
Q 016307 92 CMICQALLFECSKCTPCSHVYCKACISRFK--------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------~CP~C 126 (392)
||||+++|. +|++++|||+||..||.++| .||.|
T Consensus 1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 99999999999999999874 38876
No 2
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=1.5e-08 Score=102.48 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=147.3
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+..-+.+|+++.|...+..+.+.+..... ..++.....+.+|+..++...++.+|+.+|+.+......+.+..
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSG------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccC------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 45577899999999988777666433222 23555566778899999999999999999999988888776643
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
+..+...+++|+.++..+|.+++|..+++++++|++........ +++..|++++.++..++.+++|..+|+.
T Consensus 279 --h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 279 --HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred --CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56788999999999999999999999999999999985543333 8899999999999999999999999999
Q ss_pred HHHHHHHh--hcCCchHHHHHHHHHHHHHHHhcc
Q 016307 350 AIKRLESL--TLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 350 al~~le~l--~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
+++|+... +.++-.+.+..+|+.+|.+++.+.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 99999977 666677888888999998887654
No 3
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=3.8e-09 Score=103.15 Aligned_cols=62 Identities=31% Similarity=0.740 Sum_probs=54.6
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~~ 150 (392)
..+.|+||+++|. .|++++|||.||..||..|+ .||.|+..+.. +..|..|.++|+.|....
T Consensus 25 ~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 25 TSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 5689999999988 89999999999999999874 49999998876 889999999999986433
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.80 E-value=3.8e-09 Score=76.80 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=48.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~ 145 (392)
++.|+||.+++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..+++.++.
T Consensus 1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 467999999988 89999999999999999884 59999998865 7888888877653
No 5
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.79 E-value=2.3e-09 Score=102.50 Aligned_cols=31 Identities=32% Similarity=0.716 Sum_probs=28.4
Q ss_pred cCceeccccccccccCceeccccCcchHHhHh
Q 016307 87 IGPLSCMICQALLFECSKCTPCSHVYCKACIS 118 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~ 118 (392)
.++|.|+||..+|+ +|.+++|+|+.|..|-.
T Consensus 2 eeelkc~vc~~f~~-epiil~c~h~lc~~ca~ 32 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR-EPIILPCSHNLCQACAR 32 (699)
T ss_pred cccccCceehhhcc-CceEeecccHHHHHHHH
Confidence 36899999999988 99999999999999964
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.7e-09 Score=96.14 Aligned_cols=44 Identities=30% Similarity=0.843 Sum_probs=38.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
...+|.+|++.-. +|..+||||.|||+||..|- +||+||..+..
T Consensus 238 a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 4578999999966 99999999999999999993 59999987765
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.74 E-value=4.7e-09 Score=91.88 Aligned_cols=44 Identities=32% Similarity=0.915 Sum_probs=38.9
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC--------------------CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------------------~CP~C~~~~~~ 132 (392)
+++.|+||++.+. +|++++|||+||+.||..|. .||.|+..+..
T Consensus 17 ~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4688999999987 99999999999999998772 49999998865
No 8
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.67 E-value=6.9e-09 Score=96.43 Aligned_cols=60 Identities=30% Similarity=0.738 Sum_probs=53.6
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHHh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~~ 148 (392)
.-|.|.||++||. -|+++||+|+||.-||..+. .||.|..+++- +..|+.|.++|..|..
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4689999999988 99999999999999999883 59999999886 8999999999888753
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.66 E-value=9.4e-07 Score=89.60 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=137.4
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
-..+|++.+|...+...-+.....+.. .-+..+..+..+..++..+.++-.++.+++..........+ +..
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~~~------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g---~~~ 363 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLLGA------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG---EDN 363 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhhcc------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---ccc
Confidence 456788888888776555555442221 22444556666667777788888999999877655543322 334
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+....++|+.+++.+|.+++|...|++++++.++...+... .++..|++||..+..++++..|...|.++..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~------~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY------GVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh------hhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4788899999999999999999999999999999887766554 6788999999999999999999999999999
Q ss_pred HHHHh-hcCCchHHHHHHHHHHHHHHHhcc
Q 016307 353 RLESL-TLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 353 ~le~l-~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
|+... ..+|+..+...||+.+|..++++.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 99444 888999999999999999988764
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-08 Score=91.13 Aligned_cols=44 Identities=32% Similarity=0.850 Sum_probs=39.3
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-------CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
..+.|.||++.-. +|+++.|||.|||.||.+|. .||+|+..+..
T Consensus 46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 4688999999977 99999999999999999993 39999987765
No 11
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.5e-08 Score=92.37 Aligned_cols=62 Identities=27% Similarity=0.683 Sum_probs=53.0
Q ss_pred cCceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCcccccchhhHHHHHHHHHHHhh
Q 016307 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEG 149 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~lv~~~~~~ 149 (392)
.+++.|+||+++|. .|++++|+|+||..|+..++ .||.||.....+.+|..+.+++..+...
T Consensus 11 ~~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 11 QEELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQL 76 (386)
T ss_pred cccccChhhHHHhh-cCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhc
Confidence 36799999999999 77999999999999999876 5999996333477999999999998754
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.62 E-value=2.1e-08 Score=75.14 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=49.9
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
+.|.|||+..++. +|+++++||+|++.+|..|. .||.|+..+.. +.+|..|+..++.|...
T Consensus 3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 4688999999988 99999999999999999983 39999998887 99999999999999864
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.61 E-value=3.5e-07 Score=69.15 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+.+....++++.+...+|++++|+..|++++++ .+..... ..+++.++.++|.++..+|++++|+++|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457788999999999999999999999999999 4444321 236799999999999999999999999999999
Q ss_pred HHHH
Q 016307 353 RLES 356 (392)
Q Consensus 353 ~le~ 356 (392)
+.++
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 14
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.60 E-value=2.5e-08 Score=70.82 Aligned_cols=54 Identities=30% Similarity=0.793 Sum_probs=29.7
Q ss_pred ceeccccccccccCcee-ccccCcchHHhHhcC--CCCCCCCccccc--chhhHHHHHHH
Q 016307 89 PLSCMICQALLFECSKC-TPCSHVYCKACISRF--KDCPLCGADIEK--IEADTTLQDVV 143 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~l~~lv 143 (392)
-+.|++|.+++. .|+. ..|.|.||+.||.+. ..||+|+.+... +..|+.|.+|+
T Consensus 7 lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence 478999999999 7774 789999999999887 469999988744 99999988775
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.54 E-value=2.4e-08 Score=65.28 Aligned_cols=34 Identities=44% Similarity=1.163 Sum_probs=28.3
Q ss_pred ccccccccccCc-eeccccCcchHHhHhcC----CCCCCC
Q 016307 92 CMICQALLFECS-KCTPCSHVYCKACISRF----KDCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~----~~CP~C 126 (392)
|+||++.+. +| +.++|||+||+.||.+| ..||.|
T Consensus 1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999 67 78999999999999887 358877
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1e-07 Score=81.37 Aligned_cols=46 Identities=35% Similarity=0.798 Sum_probs=37.5
Q ss_pred cCceeccccccccccC-ceeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 87 IGPLSCMICQALLFEC-SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
...+.||||++-+.+. |+.+.|||.||+.||... ..||+|++.++.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3568999999987743 577999999999999886 359999986553
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.43 E-value=6.6e-08 Score=66.88 Aligned_cols=43 Identities=35% Similarity=0.830 Sum_probs=36.5
Q ss_pred ceeccccccccccCceeccccCc-chHHhHhcC----CCCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+..|.||++... +++.++|||. ||..|+.+| ..||.||+++..
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 467999999977 8999999999 999999998 579999998753
No 18
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.37 E-value=1.1e-07 Score=86.91 Aligned_cols=50 Identities=26% Similarity=0.735 Sum_probs=39.5
Q ss_pred CceeccccccccccCc-------eeccccCcchHHhHhcCC----CCCCCCcccccchhhH
Q 016307 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEKIEADT 137 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~ 137 (392)
.+..|+||++.+.+++ ++++|+|.||..||.+|. .||+||..+..+..++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r 233 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSR 233 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence 3578999999877443 567899999999999993 5999999887654433
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.37 E-value=9e-08 Score=64.31 Aligned_cols=37 Identities=35% Similarity=0.912 Sum_probs=31.4
Q ss_pred eccccccccc--cCceeccccCcchHHhHhcC----CCCCCCC
Q 016307 91 SCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~ 127 (392)
.|+||++.+. +.++.++|+|.||..||..| ..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999984 36889999999999999999 4599996
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.35 E-value=2.6e-07 Score=62.03 Aligned_cols=38 Identities=32% Similarity=0.981 Sum_probs=33.1
Q ss_pred ecccccccc--ccCceeccccCcchHHhHhcCC----CCCCCCc
Q 016307 91 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA 128 (392)
Q Consensus 91 ~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~ 128 (392)
.|++|...+ ...+++++|||+||..|+..+. .||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999998 3379999999999999999886 6999984
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.29 E-value=2.4e-07 Score=61.14 Aligned_cols=34 Identities=35% Similarity=1.061 Sum_probs=29.9
Q ss_pred ccccccccccCce-eccccCcchHHhHhcCC------CCCCC
Q 016307 92 CMICQALLFECSK-CTPCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|+||++.+. .++ +++|||.||..||..|+ .||.|
T Consensus 1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988 767 99999999999998873 38887
No 22
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.29 E-value=3.2e-07 Score=83.79 Aligned_cols=58 Identities=26% Similarity=0.630 Sum_probs=48.8
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~ 147 (392)
.+.|-||..+|. -|..++|||.||.-||..+. .||+||.+..- ++-+..+..+++.+.
T Consensus 25 ~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 25 MLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred HHHhhhhhheee-cceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 578999999988 99999999999999999984 49999998765 666777777766654
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.26 E-value=2.6e-07 Score=81.82 Aligned_cols=50 Identities=24% Similarity=0.782 Sum_probs=39.2
Q ss_pred CceeccccccccccC--------ceeccccCcchHHhHhcCC----------CCCCCCcccccchhhH
Q 016307 88 GPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFK----------DCPLCGADIEKIEADT 137 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~--------p~~~~C~h~fC~~Ci~~~~----------~CP~C~~~~~~~~~n~ 137 (392)
.+..|+||++...+. ++..+|+|+||..||..|. .||.||..+..+.+.+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 468899999986422 4567999999999999993 2999999887754443
No 24
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.19 E-value=3.4e-07 Score=85.60 Aligned_cols=63 Identities=38% Similarity=0.887 Sum_probs=53.7
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCccccc------chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~------~~~n~~l~~lv~~~~~~~ 150 (392)
..+.|.+|.+||.+...+..|.|+||++||..+ ..||.|...+.. +..+..|+.+|..+..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl 86 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL 86 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence 457899999999988888899999999999887 359999987765 888999999999886443
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.5e-07 Score=81.27 Aligned_cols=44 Identities=32% Similarity=0.942 Sum_probs=38.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhc-C----CC-CCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISR-F----KD-CPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~-~----~~-CP~C~~~~~~ 132 (392)
..+.|+||++... .|..++|||.||+.||.. | .. ||+||+.+..
T Consensus 214 ~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 4688999999977 999999999999999998 5 23 9999986544
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=8e-06 Score=82.41 Aligned_cols=137 Identities=18% Similarity=0.310 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 225 ~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
.+|+.|...+..++.+++.+++-..|+.+|+.+.+.. ...+...++|+.++.++|.+++|+..|.+++.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 4899999999999999999999999999998776443 34555778888888888888888888888877
Q ss_pred HHHHHhh----------cCC---------CC-CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchH
Q 016307 305 VRRDAVK----------RHS---------NV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364 (392)
Q Consensus 305 ~~~~~~~----------~~~---------~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~ 364 (392)
+.=...+ ... .. +......|...++||.++..-|+..+|+.-|+++++ .+|+-.
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk------lkPDfp 490 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK------LKPDFP 490 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc------cCCCCc
Confidence 5211000 000 00 000013455566667777766777777666666543 345554
Q ss_pred HHHHHHHHHHHHHH
Q 016307 365 GLEQRVRFLFQLLV 378 (392)
Q Consensus 365 ~l~~~l~~~~~~l~ 378 (392)
..-.|+.-.++.+.
T Consensus 491 dA~cNllh~lq~vc 504 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVC 504 (966)
T ss_pred hhhhHHHHHHHHHh
Confidence 55555555555554
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.14 E-value=6.1e-07 Score=59.56 Aligned_cols=27 Identities=37% Similarity=1.111 Sum_probs=18.4
Q ss_pred ccccccccccC----ceeccccCcchHHhHhcC
Q 016307 92 CMICQALLFEC----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 92 C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~ 120 (392)
||||.+ +. . |++++|||+||+.|+.++
T Consensus 1 CpIc~e-~~-~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FS-TEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT------TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-cc-CCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 55 5 999999999999999876
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.06 E-value=2.1e-06 Score=57.12 Aligned_cols=39 Identities=38% Similarity=1.025 Sum_probs=31.0
Q ss_pred eccccccccccCceeccccCcchHHhHhcC-----CCCCCCCcc
Q 016307 91 SCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGAD 129 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~ 129 (392)
.|+||++.+.+...+.+|+|.||..|+..| ..||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 489999998634445559999999999877 359999875
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.3e-06 Score=86.17 Aligned_cols=43 Identities=30% Similarity=0.814 Sum_probs=37.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC---------CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
...||||+.... -|+.+.|||.||+.||..+| .||.|+..+..
T Consensus 186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 578999999977 78888899999999998864 49999988776
No 30
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.96 E-value=2.9e-06 Score=54.47 Aligned_cols=34 Identities=38% Similarity=1.115 Sum_probs=29.6
Q ss_pred ccccccccccCceeccccCcchHHhHhcCC-----CCCCC
Q 016307 92 CMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C 126 (392)
|+||++... .++.++|+|.||..|+..|+ .||.|
T Consensus 1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC-CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999966 99999999999999998773 38876
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.2e-06 Score=82.39 Aligned_cols=60 Identities=23% Similarity=0.629 Sum_probs=47.5
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC-----CCCCCCCccccc---chhhHHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK---IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~---~~~n~~l~~lv~~~~ 147 (392)
..+.|+||+++|.....+..|+|.||..||... ..||.||+.+.. +.++...-.|+..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 468999999999977777789999999999765 469999998876 666655555665554
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=1.2e-05 Score=75.70 Aligned_cols=58 Identities=24% Similarity=0.556 Sum_probs=39.8
Q ss_pred ceecccccc--ccccCc--eeccccCcchHHhHhcCC-----CCCCCCccccc------chhhHHHHHHHHHH
Q 016307 89 PLSCMICQA--LLFECS--KCTPCSHVYCKACISRFK-----DCPLCGADIEK------IEADTTLQDVVDRF 146 (392)
Q Consensus 89 ~l~C~iC~~--~~~~~p--~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~------~~~n~~l~~lv~~~ 146 (392)
+..||+|.. ++...- .+.+|||.||.+|+..+| .||.|+.++.. +-.+..+..-++.-
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence 456999998 433221 333799999999999864 49999998876 34455555544443
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.77 E-value=3e-05 Score=75.29 Aligned_cols=41 Identities=22% Similarity=0.602 Sum_probs=34.1
Q ss_pred ceeccccccccccC---ceeccccCcchHHhHhcCCC--CCCCCcc
Q 016307 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFKD--CPLCGAD 129 (392)
Q Consensus 89 ~l~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~~--CP~C~~~ 129 (392)
--+||||++-+-.. .+++.|.|+|=..|+..||. ||+||..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~ 220 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYC 220 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhh
Confidence 34699999986644 37889999999999999974 9999963
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.69 E-value=0.00042 Score=52.04 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
|.....+..++.++...+++.+|+.+++++.+..+.++. ....+.....+||.+...+|++++|+.+|++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 344567888999999999999999999999999767765 2345688999999999999999999999999999876
Q ss_pred H
Q 016307 308 D 308 (392)
Q Consensus 308 ~ 308 (392)
.
T Consensus 78 k 78 (78)
T PF13424_consen 78 K 78 (78)
T ss_dssp H
T ss_pred C
Confidence 3
No 35
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.8e-05 Score=75.43 Aligned_cols=63 Identities=29% Similarity=0.841 Sum_probs=51.1
Q ss_pred cCceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCccccc-------chhhHHHHHHHHHHHhhc
Q 016307 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK-------IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~-------~~~n~~l~~lv~~~~~~~ 150 (392)
-.++.|.||...|. +|+++||||+||..||.+. ..||.||..+.. ..+|+.+..++..|..+.
T Consensus 82 ~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cchhhhhhhHhhcC-CCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35789999999999 9999999999999997765 459999998874 334677777888776543
No 36
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=1.8e-05 Score=81.89 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=38.6
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC-----CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+.|.||+|..-+. +.+++.|+|.||..|+... ..||.|+..|..
T Consensus 642 ~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3689999998877 8999999999999999876 359999998765
No 37
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.00098 Score=64.79 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=86.5
Q ss_pred hhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHH
Q 016307 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 248 h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl 327 (392)
..|+.+|++.+++.+++.+.. ..-....+||+.+|-+|+++.|+...+.-|.+.++..++..+ ....
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~-----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~ 238 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRL-----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAH 238 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhh
Confidence 345566666666667766532 233466788999999999999999999999998887665543 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
++||..+.-+|+++.|+++|+.++.+-.+|...-.++..-..++..|..++.
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e 290 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE 290 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH
Confidence 8888888888999999999998888888875555556555555555544443
No 38
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.0027 Score=60.35 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=79.6
Q ss_pred hhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 235 ~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~-g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
..-..++... +...++.+++.+.+...+.+. ....+..+.++++++... +++++|+..|++++++.+....
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-- 150 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-- 150 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--
Confidence 3333454333 778899999999888887764 455678899999999998 9999999999999998776431
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.......+.++|.++..+|++++|++.|++.....
T Consensus 151 ------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 151 ------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred ------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 12446678899999999999999999998876643
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.33 E-value=0.0021 Score=65.51 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=81.0
Q ss_pred cCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH
Q 016307 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl 323 (392)
.|+..+++..|..++.+ ...-.++.++||.++..+|.+++|...|+.++++.- +.
T Consensus 333 ~G~V~ea~~cYnkaL~l-----------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~ 387 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRL-----------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EF 387 (966)
T ss_pred ccchHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hh
Confidence 45556777776655432 233456889999999999999999999999987622 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
+...++||.++.++|++++|+..|++++.| +|.-+..+.|++..|-.++.-+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHH
Confidence 778899999999999999999999988765 4566667777776666555443
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.32 E-value=9.8e-05 Score=64.15 Aligned_cols=54 Identities=28% Similarity=0.628 Sum_probs=41.7
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCccccc-chhhHHHHHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK-IEADTTLQDVV 143 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~-~~~n~~l~~lv 143 (392)
+|.|.||...+. .|+++.|||.||..|...- -.|-.|.+.+.. +.+...++.|+
T Consensus 196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHH
Confidence 578999999988 9999999999999997654 249999887665 44444444443
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00013 Score=67.56 Aligned_cols=49 Identities=31% Similarity=0.703 Sum_probs=40.1
Q ss_pred eeccccccccccCceeccccCcchHHhHhcC-----CCCCCCCccccc-chhhHHH
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-IEADTTL 139 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-~~~n~~l 139 (392)
-.|+||+..-. .|+.++|+|.||.-||... ..|++||.++.. +-.+..+
T Consensus 8 ~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl 62 (324)
T KOG0824|consen 8 KECLICYNTGN-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSL 62 (324)
T ss_pred CcceeeeccCC-cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhh
Confidence 35999999966 8999999999999999875 349999999887 4444443
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.014 Score=50.69 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=84.6
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+...+.++...+++..|+..++.+.... .. ......+..+++.+....|++++|+..|++++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLE----ID----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cc----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 44555666667788888887777664431 11 1123457899999999999999999999999976
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA 364 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~ 364 (392)
.+........++..+..++.++..+|+++.|+..|++++..+++. ..+|++.
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 222233344566666677777779999999999999999999998 5555433
No 43
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.0055 Score=58.22 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=88.9
Q ss_pred hhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016307 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~ 318 (392)
.++...+++..|...|..+.+...++... ..-.....+.+.+.... ++++|+..|++++++.....
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-----~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-------- 108 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDK-----FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-------- 108 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--------
Confidence 35566788899999999888888776542 23345556677776555 99999999999999876532
Q ss_pred chhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 319 QVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.....+..+.++|.+++.. |+++.|++.|+++.++++.-...-.......+++.++..++
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 2224588899999999998 99999999999999999876422223334555666555554
No 44
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.19 E-value=0.00014 Score=54.46 Aligned_cols=37 Identities=38% Similarity=0.928 Sum_probs=28.7
Q ss_pred ecccccccccc------------CceeccccCcchHHhHhcCC----CCCCCC
Q 016307 91 SCMICQALLFE------------CSKCTPCSHVYCKACISRFK----DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~~------------~p~~~~C~h~fC~~Ci~~~~----~CP~C~ 127 (392)
.|+||++.|.+ ..+..+|||.|...||.+|. .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 39999999832 23556899999999999993 499997
No 45
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.17 E-value=0.00094 Score=43.38 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCC
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKP 361 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~ 361 (392)
++.++++||.++..+|++++|+.++++++.+.+++ ..||
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999999998 5554
No 46
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.11 E-value=0.00048 Score=63.60 Aligned_cols=59 Identities=27% Similarity=0.637 Sum_probs=46.4
Q ss_pred ceeccccccccccCceec-cccCcchHHhHhcC-----CCCCCCCc---ccccchhhHHHHHHHHHHHh
Q 016307 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGA---DIEKIEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~-----~~CP~C~~---~~~~~~~n~~l~~lv~~~~~ 148 (392)
.|.|++|..+++ .|+-+ .|+|.||..||... +.||.|.. -+..+.++...+.-|+.+.+
T Consensus 274 ~LkCplc~~Llr-np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 274 SLKCPLCHCLLR-NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred cccCcchhhhhh-CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 499999999999 55555 68999999999854 57999976 22338888887777877765
No 47
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00038 Score=64.41 Aligned_cols=50 Identities=24% Similarity=0.751 Sum_probs=41.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc-chhhHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTL 139 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l 139 (392)
++.|-||..+|. .||++.|+|.||..|-...+ .|++|.+.+.. +.+..-|
T Consensus 241 Pf~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL 295 (313)
T KOG1813|consen 241 PFKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKEL 295 (313)
T ss_pred Cccccccccccc-cchhhcCCceeehhhhccccccCCcceecccccccccchHHHH
Confidence 467999999999 99999999999999987653 49999998877 5554444
No 48
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0003 Score=67.53 Aligned_cols=43 Identities=33% Similarity=0.700 Sum_probs=36.8
Q ss_pred eecccccccccc--CceeccccCcchHHhHhcCC-----CCCCCCccccc
Q 016307 90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
..|.||++.|.+ .-++|||.|.|=..||..|. .||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 489999998875 37889999999999999993 39999987665
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.96 E-value=0.024 Score=49.46 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=83.6
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+...+..+...++..+|+.+++++......- .........++.+....|++++|+..|.+++++.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 102 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDP--------NDRSYILYNMGIIYASNGEHDKALEYYHQALELN------ 102 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 45556667777899999999888775432111 1123577899999999999999999999988752
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA 364 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~ 364 (392)
+........++..+..++.....+++++.|+..|+++++++++. ..+|.+.
T Consensus 103 -p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 103 -PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 22222233445555555666666788999999999999999998 6666653
No 50
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.006 Score=59.48 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=82.9
Q ss_pred hhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016307 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~ 314 (392)
..+|.-++-.|+...++...+..+++.++++++-. ...+..+||+-..-+|+++.|+++|..++.+..++..+..
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 33444555678888888888888888888876332 3347788999998899999999999999988877766555
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
+ |.+--.||..|..+..+++|+++++.-++|-++|.
T Consensus 274 E--------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 274 E--------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred H--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55555677777777778888888888888777773
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.014 Score=59.09 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=91.1
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
++.-+|-+.++...+.+|..+++..++....+......|.. ..++||-+..+++.+++|+.+|+++|.+....
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--- 488 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--- 488 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---
Confidence 44445555566677788888888887766666655544444 67999999999999999999999998653221
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
++....+|-++..+|+++.|++.|.+++. ..|++..+.+.++..+..
T Consensus 489 -----------~~~~asig~iy~llgnld~Aid~fhKaL~------l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 489 -----------ASTHASIGYIYHLLGNLDKAIDHFHKALA------LKPDNIFISELLKLAIED 535 (611)
T ss_pred -----------hhHHHHHHHHHHHhcChHHHHHHHHHHHh------cCCccHHHHHHHHHHHHh
Confidence 45678899999999999999999998874 456777776666655554
No 52
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0011 Score=60.83 Aligned_cols=46 Identities=30% Similarity=0.719 Sum_probs=35.8
Q ss_pred cCceeccccccccccCceeccccCcchHHhHhcC------CCCCCCCccccc
Q 016307 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
.....|++|.+....+-+..+|+|.||..||... +.||.|+.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3457899999997744455569999999999765 359999987654
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.009 Score=43.41 Aligned_cols=64 Identities=17% Similarity=0.392 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~~ 353 (392)
+.....+|.+....+++++|+..|.+++++ .+ +-+..+.++|.++..+| ++.+|++.|++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-------~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-------DP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-------ST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 356788999999999999999999999986 22 23557899999999999 799999999999875
No 54
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00094 Score=61.96 Aligned_cols=42 Identities=26% Similarity=0.856 Sum_probs=35.7
Q ss_pred eecccccccccc--CceeccccCcchHHhHhcCC-----CCCCCCcccc
Q 016307 90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 131 (392)
Q Consensus 90 l~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~ 131 (392)
..|.||+.-+.+ .-+.+||.|.|-..|+..|. .||+||..+.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 679999997764 37889999999999999993 5999998754
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.39 E-value=0.035 Score=58.69 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
...+.+|.+....|++++|+..|++++++
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45677888888899999999999998875
No 56
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0013 Score=68.22 Aligned_cols=43 Identities=28% Similarity=0.768 Sum_probs=37.5
Q ss_pred CceeccccccccccC----ceeccccCcchHHhHhcCC----CCCCCCccc
Q 016307 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK----DCPLCGADI 130 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~ 130 (392)
....|+||.+.+... |..++|+|.|+..|+..|. .||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 467899999999943 8999999999999999994 599999843
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.35 E-value=0.0025 Score=63.27 Aligned_cols=57 Identities=25% Similarity=0.632 Sum_probs=43.4
Q ss_pred CceeccccccccccCcee-ccccCcchHHhHhcCC----CCCCCCccccc---chhhHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK----DCPLCGADIEK---IEADTTLQDVVDR 145 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~----~CP~C~~~~~~---~~~n~~l~~lv~~ 145 (392)
..+.|++|..++. +|+. +.|||.||..|+..|. .||.|+..... +........++..
T Consensus 20 ~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~ 84 (391)
T KOG0297|consen 20 ENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLK 84 (391)
T ss_pred ccccCcccccccc-CCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHh
Confidence 5689999999999 7777 5999999999999984 59999877665 4433444444433
No 58
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.31 E-value=0.039 Score=58.35 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=51.1
Q ss_pred hhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
.++.++...++...++..++++.+. .+.. ......+|.+....|++++|+..|++++++. +.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------P~ 431 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKL----NSED-------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------PD 431 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------cc
Confidence 3444555566666666666655322 2222 2355677788888888888888888877641 11
Q ss_pred CCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
....+..+|.++..+|++++|+..|++++
T Consensus 432 -------~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 432 -------FIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11223445555555555555555555544
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.20 E-value=0.11 Score=45.10 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
........++.+....|++++|+..|.+++.+.. .+ .+.+.++.++|.++..+|++++|+..|++++.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778889999999999999999999998721 11 134567899999999999999999999999876
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHH
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
+|.......+++.++..+
T Consensus 102 ------~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 102 ------NPFLPQALNNMAVICHYR 119 (168)
T ss_pred ------CcCcHHHHHHHHHHHHHh
Confidence 344455555566665533
No 60
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.015 Score=36.81 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
++.+||.++..+|++++|+++|++++.+-+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999866543
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.09 E-value=0.12 Score=45.75 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred HHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCc
Q 016307 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~ 268 (392)
.+.-.+..|++++|...+..... .. +.....+..++.++...++...+..+++.+.+. .+..
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~-------~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~ 98 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALE-------HD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNN 98 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-------hC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC
Confidence 34445677888888777653211 11 111223344555555666666666666555332 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
......++.+....|++++|+..|++++.
T Consensus 99 -------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 99 -------GDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred -------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 12344555566666666666666666554
No 62
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0023 Score=61.00 Aligned_cols=44 Identities=27% Similarity=0.761 Sum_probs=36.3
Q ss_pred cCceeccccccccccC------------ceeccccCcchHHhHhcCC----CCCCCCccc
Q 016307 87 IGPLSCMICQALLFEC------------SKCTPCSHVYCKACISRFK----DCPLCGADI 130 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~ 130 (392)
+++-.|.||.+-+... |+.+||||.|-..|+..|. .||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 3467899999975434 4899999999999999884 499999884
No 63
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0032 Score=60.81 Aligned_cols=46 Identities=26% Similarity=0.704 Sum_probs=36.3
Q ss_pred cCceeccccccccccCc-------eeccccCcchHHhHhcCC-----------CCCCCCccccc
Q 016307 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK-----------DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~ 132 (392)
..+..|.||++...+.+ ...+|.|.||..||..|. .||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34778999999877333 125699999999999993 39999987765
No 64
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.83 E-value=0.004 Score=44.02 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=25.6
Q ss_pred ceeccccccccccCcee-ccccCcchHHhHhcCC------CCCC
Q 016307 89 PLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL 125 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~ 125 (392)
.+.|||.+..|. +|+. ..|+|+|.+..|..+. .||.
T Consensus 11 ~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 578999999999 6665 5899999999999885 3998
No 65
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.80 E-value=0.0042 Score=61.81 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=47.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeccccccccccCceeccccCcchHHhHhcC--------
Q 016307 49 NSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-------- 120 (392)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-------- 120 (392)
..++||+.+..+..++-..+ ..++..|.+|.+.-. +++...|-|.||+.||.++
T Consensus 513 Q~aDHP~LVl~S~~~n~~~e-----------------nk~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~ 574 (791)
T KOG1002|consen 513 QAADHPDLVLYSANANLPDE-----------------NKGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENN 574 (791)
T ss_pred HhccCcceeeehhhcCCCcc-----------------ccCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhccc
Confidence 45677877777644322111 114567999999977 9999999999999999665
Q ss_pred -CCCCCCCccccc
Q 016307 121 -KDCPLCGADIEK 132 (392)
Q Consensus 121 -~~CP~C~~~~~~ 132 (392)
..||.|...+..
T Consensus 575 nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 575 NVTCPVCHIGLSI 587 (791)
T ss_pred CCCCccccccccc
Confidence 359999876654
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.76 E-value=0.18 Score=43.99 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.........++.+....|++++|+..|++++++.... . +.+..+.++|.++..+|++++|+..|++++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----N------DRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----c------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444567888999999999999999999998763221 1 2345678999999999999999999998887
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+ +|.+......++.++..++
T Consensus 101 ~------~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 101 L------NPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred h------CcccHHHHHHHHHHHHHcC
Confidence 5 4455555555665554443
No 67
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.73 E-value=0.12 Score=51.52 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
+.........+++|..++..|++++|+..|+++|++. +... +...++.++|.+|..+|++++|+..|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566788999999999999999999999999772 2211 2225689999999999999999999999
Q ss_pred HHHH
Q 016307 350 AIKR 353 (392)
Q Consensus 350 al~~ 353 (392)
++++
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 9996
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.67 E-value=0.19 Score=44.44 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=83.7
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+...... -+.+...+..++.++...++..++..+++....... .
T Consensus 75 ~~~~~~~~~A~~~~~~al~~--------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~ 131 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTL--------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---------Y 131 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhh--------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc---------c
Confidence 45567777776666422211 122233555667777778888888888877653210 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.........++.+....|++++|...|.++++.. +.. ...+..++.++..+|++++|...+++++.
T Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------PQR-------PESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122345668899999999999999999988652 111 23456789999999999999999998877
Q ss_pred H
Q 016307 353 R 353 (392)
Q Consensus 353 ~ 353 (392)
+
T Consensus 198 ~ 198 (234)
T TIGR02521 198 T 198 (234)
T ss_pred h
Confidence 6
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.64 E-value=0.097 Score=37.40 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 282 l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
++.+....|++++|+..|++.++ ..+. -...+..+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-------~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-------QDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-------CSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------HCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677778888888888887664 3343 4667889999999999999999999988754
No 70
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0053 Score=58.65 Aligned_cols=42 Identities=31% Similarity=0.854 Sum_probs=35.7
Q ss_pred eeccccccccccCceeccccCcc-hHHhHhcC----CCCCCCCccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVY-CKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~----~~CP~C~~~~~~ 132 (392)
..|-||+.-.+ +.+++||.|.. |..|-... ..||.||+++..
T Consensus 291 keCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 56999999988 99999999975 99997654 459999998765
No 71
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.45 E-value=0.0064 Score=63.13 Aligned_cols=44 Identities=16% Similarity=0.488 Sum_probs=35.3
Q ss_pred ceeccccccccccCce--eccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSK--CTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~--~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.-+|++|+.-+.+.-+ -.+|+|.||..||..|. .||+||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 5679999988775433 34699999999999993 59999988765
No 72
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.35 E-value=0.039 Score=34.88 Aligned_cols=32 Identities=34% Similarity=0.612 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
++.+||.++..+|++++|+..|+++|.+.++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 36789999999999999999999999876553
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.14 Score=48.84 Aligned_cols=58 Identities=22% Similarity=0.594 Sum_probs=44.7
Q ss_pred ceecccccccccc-----CceeccccCcchHHhHhcC-----CCCCCCCccccc-------chhhHHHHHHHHHH
Q 016307 89 PLSCMICQALLFE-----CSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-------IEADTTLQDVVDRF 146 (392)
Q Consensus 89 ~l~C~iC~~~~~~-----~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-------~~~n~~l~~lv~~~ 146 (392)
.+.|-||-+.|.. -|+.+.|||+||..|+... +.||.||.+... +..|+.+...+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3568888776543 4899999999999999876 459999998432 77788877777665
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.04 Score=55.83 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
..++++|-+.+..+++.+|..+|+.+++.++.+..+.+ -+.-.+++||-+++.++.+++|+..|++++.+..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999977666654433 3556789999999999999999999999987654
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.19 E-value=0.31 Score=55.50 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=71.5
Q ss_pred hhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Q 016307 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--------- 308 (392)
Q Consensus 238 C~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~--------- 308 (392)
+......++...|+..++++.+. .+.. ..+...++.+...+|++++|+..|++++++.-.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~----~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV----DNTD-------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44555667777777777665433 2222 235678899999999999999999999864210
Q ss_pred -Hhh-cCCCCCcchh------------HH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 016307 309 -AVK-RHSNVPSQVL------------DV-----AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 369 (392)
Q Consensus 309 -~~~-~~~~~~~~~~------------dl-----a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~ 369 (392)
... ...+.....+ +. ...+..++.++...|++++|++.|++++++ +|++..+..+
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~ 500 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYR 500 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 000 0000000000 00 112345677778889988888888877653 4555555555
Q ss_pred HHHHHHH
Q 016307 370 VRFLFQL 376 (392)
Q Consensus 370 l~~~~~~ 376 (392)
++.+|..
T Consensus 501 LA~~~~~ 507 (1157)
T PRK11447 501 LAQDLRQ 507 (1157)
T ss_pred HHHHHHH
Confidence 5554443
No 76
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=1.1 Score=46.42 Aligned_cols=90 Identities=18% Similarity=0.312 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH-----------
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG----------- 346 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~----------- 346 (392)
+.--+|-++.+++.++.|.-.|++++++ .+.+. +.+..+|.++..+|+.++|+.+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~I-------NP~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEI-------NPSNS-------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcC-------Cccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 4455677888888888888888887764 11111 1122233333333333333333
Q ss_pred ----------------HHHHHHHHHHh-hcCCchHHHHHHHHHHHHHHHhcc
Q 016307 347 ----------------FQEAIKRLESL-TLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 347 ----------------~~eal~~le~l-~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
|.+++..||+| +.-|+++.....++-+|-.++...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 34445566666 666788888888888887776543
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.88 E-value=0.33 Score=55.35 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~----~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~ 306 (392)
...+..++.++...+++.+|+.+++++.+....... ...+...+. .....++.+....|++++|+..|++++++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 445667788888889999999888876543211110 011222222 12345577788889999999999998876
Q ss_pred HHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
.+.. ...+..+|.++..+|++++|++.|++++++ +|.+......++.+
T Consensus 381 ------~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~------~p~~~~a~~~L~~l 428 (1157)
T PRK11447 381 ------DNTD-------SYAVLGLGDVAMARKDYAAAERYYQQALRM------DPGNTNAVRGLANL 428 (1157)
T ss_pred ------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 2221 345678899999999999999999988865 34444444444443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.85 E-value=0.29 Score=44.58 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=83.4
Q ss_pred HHHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhh--hhhhhcCCchhhhcHHHHHHHHHH
Q 016307 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLG--DCCRAMGDADAAVAYFADSVEFLM 262 (392)
Q Consensus 185 cl~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC--~~~~~~h~~h~a~~~~e~~~e~~~ 262 (392)
=.++.++.-+++|+...|+..+.-.-+| .++.. +-+.. ..+...+.+..|-..|+.+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-------DPs~~---------~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---- 96 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-------DPSYY---------LAHLVRAHYYQKLGENDLADESYRKAL---- 96 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccH---------HHHHHHHHHHHHcCChhhHHHHHHHHH----
Confidence 4677888999999999998877533222 11111 11111 12334455545544444332
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHH
Q 016307 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 263 ~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
.+.+.. .+++|+.|.....+|.+++|..+|+++++. +. ....+.++.|+|.....+|+...
T Consensus 97 sl~p~~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~----Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 97 SLAPNN-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PA----YGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred hcCCCc-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CC----CCCcchhhhhhHHHHhhcCCchh
Confidence 222222 347789999999999999999998888752 11 11345577888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 016307 343 AVDGFQEAIKRLE 355 (392)
Q Consensus 343 A~~~~~eal~~le 355 (392)
|.++|++++.+.-
T Consensus 158 A~~~l~raL~~dp 170 (250)
T COG3063 158 AEEYLKRALELDP 170 (250)
T ss_pred HHHHHHHHHHhCc
Confidence 8888888877653
No 79
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.0032 Score=43.16 Aligned_cols=42 Identities=38% Similarity=0.740 Sum_probs=33.6
Q ss_pred eeccccccccccCceeccccCc-chHHhHhcCC-----CCCCCCccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHV-YCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
-.|.||.+-.. +.++..|||. +|..|-.+.| .||.||+++..
T Consensus 8 dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 35999999977 8899999994 5889966654 49999987654
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.74 E-value=0.015 Score=40.21 Aligned_cols=41 Identities=29% Similarity=0.842 Sum_probs=32.6
Q ss_pred eeccccccccccCceeccccCcchHHhHhcC--CCCCCCCcccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
..|-.|...-. ..++++|+|..|..|+..+ ..||.|..++.
T Consensus 8 ~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYNGCPFCGTPFE 50 (55)
T ss_pred eeEEEcccccc-ccccccccceeeccccChhhccCCCCCCCccc
Confidence 45677777644 7899999999999998654 67999998765
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.74 E-value=1.5 Score=37.04 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=80.3
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
++......+++.++...++... .+.+.. ......+|.+....|++++|+..|++++++ .+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al----~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~- 90 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLV----MAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALML-------DAS- 90 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCC-
Confidence 4556667788888887776542 333322 346688999999999999999999998864 232
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
-+..+.++|.++..+|++++|+..|++++. ..|++.....+++.+...+.
T Consensus 91 ------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~------~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 91 ------HPEPVYQTGVCLKMMGEPGLAREAFQTAIK------MSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred ------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHH
Confidence 255788999999999999999999988865 44666666666665554443
No 82
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.72 E-value=0.011 Score=56.91 Aligned_cols=42 Identities=31% Similarity=0.847 Sum_probs=36.2
Q ss_pred eeccccccccccCceeccccCcchHHhHhcCC------CCCCCCccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
-.|.||-+-=. +.++-||||..|..|+..|. .||.||..+..
T Consensus 370 eLCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 35899999844 89999999999999999994 39999988765
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.72 E-value=0.021 Score=51.93 Aligned_cols=59 Identities=25% Similarity=0.595 Sum_probs=42.6
Q ss_pred ceecccccccccc-CceeccccCcchHHhHhcCC--CCCCCCcccccchhhHHHHHHHHHHH
Q 016307 89 PLSCMICQALLFE-CSKCTPCSHVYCKACISRFK--DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~l~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~~~~n~~l~~lv~~~~ 147 (392)
.+.|-.|...-.. .-+++.|+|+||..|..... .||+|++++..+..|..+..-+..+.
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F 64 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYF 64 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHc
Confidence 4567777764322 35677899999999987653 69999999887666666655565555
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=0.87 Score=43.05 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 016307 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 227 C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~ 306 (392)
+....+.|+.=|.-.+...++..|+..|.++. +|.+...-+-. +-...+.++|+++.|+...+.+|.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI----~l~P~nAVyyc-------NRAAAy~~Lg~~~~AVkDce~Al~i- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAI----ELDPTNAVYYC-------NRAAAYSKLGEYEDAVKDCESALSI- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----hcCCCcchHHH-------HHHHHHHHhcchHHHHHHHHHHHhc-
Confidence 55667788877777777788888888877663 34454544433 3334455566666777777777654
Q ss_pred HHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
++ .-..++..||.+|..+|++++|++.|+.++ ..+|+++....+|.-.=+.+
T Consensus 145 ------Dp-------~yskay~RLG~A~~~~gk~~~A~~aykKaL------eldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 145 ------DP-------HYSKAYGRLGLAYLALGKYEEAIEAYKKAL------ELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred ------Ch-------HHHHHHHHHHHHHHccCcHHHHHHHHHhhh------ccCCCcHHHHHHHHHHHHHh
Confidence 22 124578899999999999999999988776 45778887777766544433
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.63 E-value=0.16 Score=43.06 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~ 360 (392)
..+......|++++|+..|.+++.+ .+. ....+..+|.++..+|++++|+..|++++.+ +
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~ 88 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHALML------D 88 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence 4678888899999999999997754 232 2557789999999999999999999988853 6
Q ss_pred CchHHHHHHHHHHHHHHHhc
Q 016307 361 PEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 361 ~~~~~l~~~l~~~~~~l~~~ 380 (392)
|.+.....+++.++..++.+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCH
Confidence 78888888888877766543
No 86
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.62 E-value=0.095 Score=33.56 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
..++++|+.++..+|++++|+..+++++++++......
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999998876543
No 87
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.57 E-value=0.022 Score=43.43 Aligned_cols=40 Identities=28% Similarity=0.696 Sum_probs=28.3
Q ss_pred ccccccccccCc-eeccccCcchHHhHhcCC-------CCCCCCcccc
Q 016307 92 CMICQALLFECS-KCTPCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 92 C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
||.|.-.-.+.| +.-.|+|.|-..||.+|. .||.||+...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 555554433334 444699999999999983 3999998653
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.32 E-value=0.61 Score=49.93 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
+.+...+.+++++....|.+.++..+++.. -++.+.....+.. .+.+..+++.+++|+..+++++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a~~~-------~a~~L~~~~~~eeA~~~~~~~l---- 147 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEAFIL-------MLRGVKRQQGIEAGRAEIELYF---- 147 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHHHHH-------HHHHHHHhccHHHHHHHHHHHh----
Confidence 334556666777766677777766665544 3344544444333 3334434444444444444433
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...+++ +..+..+|.++..+|++++|...|++++
T Consensus 148 ---~~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 148 ---SGGSSS-------AREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred ---hcCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333332 3344555555555555555555555544
No 89
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.01 Score=55.04 Aligned_cols=41 Identities=32% Similarity=0.704 Sum_probs=35.3
Q ss_pred ceeccccccccccCceeccccC-cchHHhHhcCCCCCCCCccc
Q 016307 89 PLSCMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADI 130 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h-~fC~~Ci~~~~~CP~C~~~~ 130 (392)
...|.||.+..+ +=+.|+||| +-|..|=.+...||.||+-+
T Consensus 300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc-ceEEeecCcEEeehhhccccccCchHHHHH
Confidence 346999999988 889999999 55999988888999999743
No 90
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.06 E-value=0.98 Score=44.31 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
....++.+....+++++|+..|+++++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 3455666666677777777777776653
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.00 E-value=0.16 Score=37.21 Aligned_cols=92 Identities=20% Similarity=0.355 Sum_probs=60.5
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
.+.+....++...++.+++...+. .+... .....++.+....+++++|+..|++++.+. +..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~ 67 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-------PDN 67 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ccc
Confidence 344444566777777666554322 22111 456778888888888889988888877641 111
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...+..++.++..+|+++.|...+++++..
T Consensus 68 -------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 -------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 145677888888889999998888877653
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=0.67 Score=47.51 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
+..-+....|.|.+|+..++.++++-++.+.....+.+ ...+++..--.|+-|++.+|+-++|.+.|...+... ...
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D 257 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PAD 257 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCC
Confidence 44555566799999999999999998877766554433 334666666789999999999999998887655432 122
Q ss_pred CCchHHHHHHHHHH
Q 016307 360 KPEEAGLEQRVRFL 373 (392)
Q Consensus 360 ~~~~~~l~~~l~~~ 373 (392)
.|-.+.+.+||-.+
T Consensus 258 ~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 258 EPSLAVAVNNLVAL 271 (652)
T ss_pred chHHHHHhcchhhh
Confidence 23444455555443
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.92 E-value=1.1 Score=38.52 Aligned_cols=117 Identities=13% Similarity=-0.007 Sum_probs=86.7
Q ss_pred hhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016307 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~ 314 (392)
.-++......++..+|..+++-. ..+. +....-.-+||-+...+|++++|+..|..++.+. +
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L----~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~ 100 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLL----TIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------I 100 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH----HHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------C
Confidence 33444555778888888877633 2332 3344566788999999999999999999988652 2
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+ -....-++|..+-.+|+.+.|.+.|+.++.... .+|..+.+.++-...+..|..
T Consensus 101 d-------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~---~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 101 D-------APQAPWAAAECYLACDNVCYAIKALKAVVRICG---EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred C-------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHhhc
Confidence 2 144678899999999999999999999999984 557788888877666666543
No 94
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.88 E-value=0.54 Score=46.25 Aligned_cols=109 Identities=7% Similarity=0.085 Sum_probs=78.1
Q ss_pred hhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016307 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~ 319 (392)
.....+++..|+.++.++.+. .+... .....++.++..+|++++|+..|++++++. +.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P~---- 68 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIELD-------PS---- 68 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cC----
Confidence 344667778888887766432 23222 355788888888999999999999998762 21
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+..+..+|.++..+|++++|+..|++++.+ +|.+..+...++.+...|..
T Consensus 69 ---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 69 ---LAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Confidence 2446778899999999999999888877754 45666666666666666543
No 95
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.04 Score=53.47 Aligned_cols=43 Identities=28% Similarity=0.728 Sum_probs=34.9
Q ss_pred eecccccccccc----CceeccccCcchHHhHhcC------CCCCCCCccccc
Q 016307 90 LSCMICQALLFE----CSKCTPCSHVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
.+||||++-+.. ..+.+.|||.|-..||++| ..||.|......
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 569999997764 2677899999999999999 359999865544
No 96
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.83 E-value=1.1 Score=49.97 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
....++.+....|++++|+..|++++++ .+.+ +..+.++|.++..+|++++|+..|+++++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~----- 671 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL-------EPNN-------SNYQAALGYALWDSGDIAQSREMLERAHK----- 671 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4466677777777777777777776653 2221 23445555555555555555555544433
Q ss_pred hcCCchHHHHHHHHHHHHHHH
Q 016307 358 TLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~ 378 (392)
..|++..+..+++.++..++
T Consensus 672 -l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 672 -GLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred -hCCCCHHHHHHHHHHHHHCC
Confidence 24455555555555544433
No 97
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.80 E-value=0.18 Score=30.88 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
|..+.++|.++..+|++++|+..|++++++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567899999999999999999999999863
No 98
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.76 E-value=1.6 Score=42.86 Aligned_cols=60 Identities=22% Similarity=0.076 Sum_probs=36.3
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
+..++.++...++...|..+++...+. .+ .-......++.+....|++++|+..|.++++
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~----~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDE----GD-------FAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcC----Cc-------chHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 444455555566666666555544321 11 1223566777788888888888888887665
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.72 E-value=0.51 Score=45.05 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+...|.++...++...++..++.+.+ +.+.. ..+.+.+|.+....|++++|+..|.+++++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------- 127 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALA----LRPDM-------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------- 127 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 444556666667777777776665533 23322 357788999999999999999999988865
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.+. ....+.++|.++..+|++++|++.|++++.
T Consensus 128 ~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 128 DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 133567788888888888888887777765
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.60 E-value=0.95 Score=41.15 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhC
Q 016307 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L 264 (392)
-++..+...+..|++++|...+... +...+.+ +.....+..++.+....++...|+..++...+..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~-------~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEAL-------ESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 4555566678889999988876522 1111111 1112345556777778888899988887765332
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCcch---hH-------HHHH
Q 016307 265 PMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQV---LD-------VAVS 326 (392)
Q Consensus 265 ~~~~~e~~~~i~~~~~~l~~l~~~~--------g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~---~d-------la~s 326 (392)
+.... +......+|.+.... |++++|+..|++.+.. .+...... .. +...
T Consensus 101 -p~~~~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 101 -PNHPD----ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred -cCCCc----hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHH
Confidence 22222 123455566666554 5666777777666543 22221110 01 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.-.+|.++..+|++.+|+..|+++++.. ...|.......+++.++..++.
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENY---PDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCC
Confidence 1256788889999999999888877664 3345556666677777666554
No 101
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.60 E-value=1.2 Score=47.64 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....++.+....|++++|+..|++++++ .+. .......++.++..+|++++|+..|++++
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l-------~P~-------~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLAT-------HPD-------LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667788888888888888888887764 121 12234455666666666666665554443
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.49 E-value=1.1 Score=42.86 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......+|.++...|++++|+..|.+++++ .+. ....+.++|.++..+|++++|+..|++++++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-- 127 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL-------RPD-------MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-- 127 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 445778899999999999999999998874 232 2567889999999999999999988888754
Q ss_pred HhhcCCchHHHHHHHHHHHH
Q 016307 356 SLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~ 375 (392)
+|++.....+++.++.
T Consensus 128 ----~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 128 ----DPTYNYAYLNRGIALY 143 (296)
T ss_pred ----CCCCHHHHHHHHHHHH
Confidence 4555555555555443
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.32 E-value=0.17 Score=51.57 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH-------HHHhhcCCCCCcchh--------------HHHHHHHHHHHHHHhcC
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVR-------RDAVKRHSNVPSQVL--------------DVAVSLAKVADVDRSIG 338 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~-------~~~~~~~~~~~~~~~--------------dla~sl~~la~~~~~~g 338 (392)
.-||-|.+..++++.|+..|+.+|++. ... +...++..+-. .-.++..+||.-+.++|
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL-GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL-GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh-hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 456666666777777777777777642 111 11111111111 12233467999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh----hcCCchHHHHHHHHHHHHHHHhcc
Q 016307 339 NEDVAVDGFQEAIKRLESL----TLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 339 ~~~~A~~~~~eal~~le~l----~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
.|++|+++|-+|+.+.++- +..-.+..+-+.|..++..++...
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999999999999874 222223456666666666666665
No 104
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.32 E-value=0.67 Score=33.71 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
...++.+....|++++|+..|+++++.. +.. ...+..++.++..++++++|+..|++++.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALELD---- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 4567777778889999998888877642 111 1456778888888899999998888776643
Q ss_pred cCCchHHHHHHHHHHHHHH
Q 016307 359 LKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 359 ~~~~~~~l~~~l~~~~~~l 377 (392)
|.+......++.++..+
T Consensus 65 --~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 65 --PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred --CcchhHHHHHHHHHHHH
Confidence 33334444455444443
No 105
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.052 Score=49.84 Aligned_cols=44 Identities=23% Similarity=0.625 Sum_probs=34.5
Q ss_pred ceecccccccccc---------CceeccccCcchHHhHhcCC------CCCCCCccccc
Q 016307 89 PLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~---------~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
...|+||-.-+.. ....+.|+|+|=..||..|- .||.|+..+..
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4459999876542 34678999999999999993 49999987765
No 106
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.24 E-value=1.2 Score=34.70 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
.+++.+|+..+.+..+.......... .......+-++|.++..+|+.++|+..+++++.+-++...
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 57888888888888776544332221 2245556778999999999999999999999999987753
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.22 E-value=0.57 Score=42.00 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLK-YYGGD--LQAARSYYVRSLN 304 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~-~~~g~--l~~A~~~~e~sl~ 304 (392)
|.+.+.+..+|.++...++...|+..++.+. ++.+...+ ....++.+. ...|+ .++|+..|+++++
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----~l~P~~~~-------~~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQAL----QLRGENAE-------LYAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHH-------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3445567778888888999999988887653 34444443 445666653 45565 4677776666664
Q ss_pred HHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 305 ~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
..+.+ ...+..+|..+..+|++++|+..|+++++..
T Consensus 139 -------~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 139 -------LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred -------hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34443 3478899999999999999999998887655
No 108
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.18 E-value=1.9 Score=41.95 Aligned_cols=109 Identities=19% Similarity=0.203 Sum_probs=71.0
Q ss_pred CchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHH
Q 016307 246 DADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV 325 (392)
Q Consensus 246 ~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~ 325 (392)
++.++..+.-.+.+..+.+.-.+-. ...-..++-.+.--...+|++-.|.++.+++.++.-+..++.. -+.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~--------~ar 247 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL--------QAR 247 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH--------HHH
Confidence 3444444444444555544321110 1112233334444555567777999999999888666554444 378
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCch
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 363 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~ 363 (392)
.+--+|++|+..|+.+.|...|+++..++..+...-.+
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 88999999999999999999999999999887443333
No 109
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.13 E-value=0.15 Score=47.82 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=37.2
Q ss_pred cCceecccccccccc---CceeccccCcchHHhHhcCC---CCCCCCccccc
Q 016307 87 IGPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
...+.|||....|.. -..+.+|||+|+..+|.... .||.|..++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 356889999988742 14555999999999999875 69999999876
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.09 E-value=2.4 Score=46.77 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=72.8
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
++......++...+..+++++.+........ .........++.+....|++++|...+++++++.+.......
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~-----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-- 569 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVY-----HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL-- 569 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcch-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc--
Confidence 3444455667777777777666655554432 223346688899999999999999999999987665321110
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
...+.....++.++..+|++++|...+++++.+.+.
T Consensus 570 ----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 570 ----PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred ----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 011223445677777789998888888888887664
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.00 E-value=0.44 Score=34.24 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+..+..+|.++..+|++++|+..|++++.+ +|.+..+..+++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999998876 6889999999999988876
No 112
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.84 E-value=4.7 Score=33.16 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~-dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
..+++...+.+++-.++-.|++++.+.++...........+. --..+--+||..|+.+|+-+-.+.+++=|-+.+..|.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi 84 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI 84 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Confidence 345666777788889999999999998887544433333332 2233556899999999999999999999988888882
Q ss_pred cCC---chHHHHHH----HHHHHHHHHhc
Q 016307 359 LKP---EEAGLEQR----VRFLFQLLVVS 380 (392)
Q Consensus 359 ~~~---~~~~l~~~----l~~~~~~l~~~ 380 (392)
-.. .=..+.+. ...+++||+.-
T Consensus 85 PQCp~~~C~afi~sLGCCk~ALl~F~KRH 113 (140)
T PF10952_consen 85 PQCPNTECEAFIDSLGCCKKALLDFMKRH 113 (140)
T ss_pred cCCCCcchHHHHHhhhccHHHHHHHHHhC
Confidence 222 22334444 44677777653
No 113
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.51 E-value=1.2 Score=48.12 Aligned_cols=85 Identities=24% Similarity=0.321 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHHhhcCCCCCcchhHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVR--------------------------RDAVKRHSNVPSQVLDVAVSLAKVA 331 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~--------------------------~~~~~~~~~~~~~~~dla~sl~~la 331 (392)
....++.+....|++++|+..|+++++.. +......+. -...+..++
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~~~~~la 777 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-------DAVLRTALA 777 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHH
Confidence 34556778888889999999888876531 111111121 123456678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
.++..+|++++|+..|+++++. .|.+.....+++.++.
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKK------APDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Confidence 8888888888888888776543 3444444444444443
No 114
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.44 E-value=0.37 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
..+-.+|.++..+|++++|+..|++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467789999999999999999999999874
No 115
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.065 Score=51.01 Aligned_cols=46 Identities=30% Similarity=0.587 Sum_probs=36.5
Q ss_pred CccCceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCcccc
Q 016307 85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 85 ~~~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
...++..||||-.--. ..+..||+|.-|+.||.++ +.|=.|+..+.
T Consensus 418 p~sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3446778999998866 8899999999999999987 34667766543
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.33 E-value=2.4 Score=45.49 Aligned_cols=104 Identities=11% Similarity=-0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
++|+|......|..++....+..+|+...++... ..+.. ...+..++.....+|++++|+..|+++++
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~- 182 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-------AREILLEAKSWDEIGQSEQADACFERLSR- 182 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh-
Confidence 5677766667777777666666666555443321 12222 24667778888888899999999998874
Q ss_pred HHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
..+ +-+..+-++|.++..+|+.++|...|+++++..
T Consensus 183 ------~~p-------~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 183 ------QHP-------EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ------cCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 222 225567788888999999999999999997764
No 117
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.33 E-value=0.41 Score=29.05 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
+..+-.+|.++..+|++++|++.|++++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346778999999999999999999999876
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.14 E-value=0.95 Score=44.52 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
...+.-....|++++|+..|.+++++ .+.+ +..+.++|.++..+|++++|+..+++++.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~-------~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------ 65 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL-------DPNN-------AELYADRAQANIKLGNFTEAVADANKAIEL------ 65 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34466677789999999999998864 2221 346778899999999999999888888764
Q ss_pred CCchHHHHHHHHHHHHHHHhc
Q 016307 360 KPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 360 ~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.|.+.....+++.++..++.+
T Consensus 66 ~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 66 DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred CcCCHHHHHHHHHHHHHhCCH
Confidence 567777777777777666543
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=92.11 E-value=4.2 Score=33.14 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=68.3
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++..+...+++.+|...++.... +.+... .....++.+....|++++|+..|++++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 80 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL------ 80 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3445556666677787777777655432 233222 45567888888888899999988887764
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+. ....+.++|.++..+|++++|+..|++++...
T Consensus 81 -~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 -DPD-------DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 24456788999999999999999888777653
No 120
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=3.4 Score=41.52 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
....-||+.+.+++.+++|+..|.+++..-.. + ...+..||.+++.++++++|..+|++-++..+.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDT------E--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------c--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35567899999999999999999998854211 1 456889999999999999999999999997744
Q ss_pred h
Q 016307 357 L 357 (392)
Q Consensus 357 l 357 (392)
.
T Consensus 499 e 499 (559)
T KOG1155|consen 499 E 499 (559)
T ss_pred h
Confidence 4
No 121
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=1.3 Score=40.87 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 282 l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
++-|...+..+.++..+|+++..+..+.....+. +..|.+-|.+.++ .+-+.|+.+|++++.++++-
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtA--------AmaleKAak~len-v~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTA--------AMALEKAAKALEN-VKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH--------HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Confidence 3334444445557777777777776665443333 5566777777776 66777777777777777653
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.11 Score=47.23 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=36.7
Q ss_pred ceeccccccccccC---ceeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
-+.||+|.+.|.+. .+..+|||+||..|++.+ ..||+|..++..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 47899999998863 566789999999999988 359999987654
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.70 E-value=1.2 Score=35.15 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=65.7
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
.+......+++..|...++..... - +.. .......-.++.+....|+++.|+..|++.+... +..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~---~-~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~ 72 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKK---Y-PKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-------PKS 72 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---C-CCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-------CCC
Confidence 344445567777777777655422 1 111 1123456678999999999999999999888542 211
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
. ....++..+|.++..+|++++|+..|++++..
T Consensus 73 ~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 P----KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred C----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 1 12445778888999999999999888777665
No 124
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.63 E-value=0.034 Score=41.13 Aligned_cols=43 Identities=28% Similarity=0.801 Sum_probs=19.8
Q ss_pred ceeccccccccccC---c--eec--cccCcchHHhHhcCC---------------CCCCCCcccc
Q 016307 89 PLSCMICQALLFEC---S--KCT--PCSHVYCKACISRFK---------------DCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~~---p--~~~--~C~h~fC~~Ci~~~~---------------~CP~C~~~~~ 131 (392)
++.|+||..++.+. | +.. .|+..|=..||.+|+ .||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46799999875412 2 222 588888889998882 2999998765
No 125
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.53 E-value=3 Score=44.57 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQA----ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~----A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
....++.+....|++++ |+..|++++++ .+. .+..+..+|.++..+|++++|+..|++++.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-------NSD-------NVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44567777777777765 45555555432 232 2456778899999999999999888887753
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHH
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
+|++.....+++.++..+
T Consensus 314 ------~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 314 ------HPDLPYVRAMYARALRQV 331 (656)
T ss_pred ------CCCCHHHHHHHHHHHHHC
Confidence 566666666666555443
No 126
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.42 E-value=3.3 Score=44.96 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.-.++.++. +++...++..|..++.+....... +. ...|+++|..+..+|++.+|...|.+|+..+...
T Consensus 416 a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~-ip--------~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 416 AWLELAQLLE-QTDPWASLDAYGNALDILESKGKQ-IP--------PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCC-CC--------HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 4444555553 345555599999999887765544 22 4578999999999999999999999999996654
Q ss_pred ---hc-CCchHHHHHHHHHHHHHHHhc
Q 016307 358 ---TL-KPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 358 ---~~-~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.. ...+..+..|++.++..++..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhh
Confidence 21 124455788888888777543
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.37 E-value=2 Score=42.93 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.++=+||-....+|.+++|+..|-+...+.+.. +..|-.++.+|+.+.+-.+|+++|-|+-
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~----- 585 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQAN----- 585 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhc-----
Confidence 355566666666777777777777666554332 2234455666666666666665554443
Q ss_pred hhcCCchHHHHHHHHHHHHHH
Q 016307 357 LTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l 377 (392)
..-|.+..++..++.+|+.-
T Consensus 586 -slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 586 -SLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred -ccCCCCHHHHHHHHHHhhcc
Confidence 33355666666666666543
No 128
>PRK12370 invasion protein regulator; Provisional
Probab=91.28 E-value=1.9 Score=45.12 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.+..+|.++..+|++++|...+++.
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4567788888899999998877654
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.15 E-value=1.5 Score=35.88 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++......|++++|+..|++.+.. .+.+ ...+..+|.++..+|++.+|+..|++++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 80 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-------DPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAAL--- 80 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34567788888889999999998877654 2221 345678888998889999888888776664
Q ss_pred hhcCCchHHHHHHHHHHHHHHHh
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|++.....+++.++..++.
T Consensus 81 ---~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 81 ---DPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred ---CCCChHHHHHHHHHHHHcCC
Confidence 56777777777776665543
No 130
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.14 Score=47.95 Aligned_cols=41 Identities=32% Similarity=0.721 Sum_probs=30.9
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC--CCCCCCCcc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGAD 129 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~ 129 (392)
..+|.-|---+..=-+.++|.|+||..|-... +.||.|...
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccH
Confidence 46788886543334678899999999997655 579999764
No 131
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=3.7 Score=37.72 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=20.9
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYG-GDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 279 ~~~l~~l~~~~-g~l~~A~~~~e~sl~~~~ 307 (392)
.-.|++++... .++++|+..|+++-+-.+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 34667777664 688888888888877544
No 132
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.94 E-value=0.086 Score=55.89 Aligned_cols=40 Identities=33% Similarity=0.730 Sum_probs=34.1
Q ss_pred eeccccccccccCceeccccCcchHHhHhcCC------CCCCCCcccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
..|.+|.+ .. .++++.|+|.||..|+...+ .||.||..+.
T Consensus 455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 35 99999999999999998874 3999986543
No 133
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=90.89 E-value=2.7 Score=45.40 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------------------HHhhcCCCCCcchhHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR---------------------------DAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~---------------------------~~~~~~~~~~~~~~dla~sl 327 (392)
.......++......|++++|+..|+++++... ......+ +....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 196 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-------GNVDAL 196 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHH
Confidence 345566778888888899999988888765311 0000011 112234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
..++.++..+|++++|+..|++++. .+|.+......++.++...
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~~~~~~~~~ 240 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIA------LRPNNPAVLLALATILIEA 240 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHc
Confidence 4456667777777777777776653 3566666555555555433
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.82 E-value=4.9 Score=44.39 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred hhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016307 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~ 319 (392)
+....++...+..+.+++.+. +.... ........+.++.+....|++++|...|+++++..+....
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~---~~~~~---~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-------- 526 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAE---LPLTW---YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-------- 526 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--------
Confidence 333455555565555544332 22111 1123345678899999999999999999999987664321
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
....+..+.+++.++..+|++..|...+++++.+.+..
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 11335577889999999999999999999999988775
No 135
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=2 Score=43.62 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--Hh------hc----CCCCCcchhHHHHHHHHHHHHHHhcCCH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--AV------KR----HSNVPSQVLDVAVSLAKVADVDRSIGNE 340 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~--~~------~~----~~~~~~~~~dla~sl~~la~~~~~~g~~ 340 (392)
..|+..+-.+|..+...++++.++.+|+++|...+. .+ ++ .......-.+++...-.-|.-....|++
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 347888888999999999999999999999885442 11 11 0000111123333333446666677999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 016307 341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 341 ~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
.+|+..|.+++ ..+|+++.+-.|++..|..|+++.
T Consensus 375 ~~Av~~YteAI------kr~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 375 PEAVKHYTEAI------KRDPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHHHHHH------hcCCchhHHHHHHHHHHHHHhhHH
Confidence 99999999854 445999999999999888887754
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.46 E-value=2.4 Score=33.35 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
.-.++......|++++|+..|++.+.. .+... ......-.+|.++...|+++.|+..|++++... .
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p 70 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---P 70 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---C
Confidence 345677777889999999999888753 12111 113345678999999999999999888887543 2
Q ss_pred cCCchHHHHHHHHHHHHH
Q 016307 359 LKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 359 ~~~~~~~l~~~l~~~~~~ 376 (392)
.++.......+++.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQE 88 (119)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 222233445555555443
No 137
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.32 E-value=1.3 Score=32.10 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 283 ~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
..++...+++++|+..+++++.+ .+.. ...+-..|.++..+|++.+|++.|+++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667788899998888888866 3322 334567899999999999999988888843
No 138
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.21 E-value=0.32 Score=46.41 Aligned_cols=61 Identities=21% Similarity=0.483 Sum_probs=43.2
Q ss_pred CccCceeccccccccccCceeccccCcchHHhHhcC-CCCCCCCcccccchhhHHHHHHHHHH
Q 016307 85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRF 146 (392)
Q Consensus 85 ~~~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~~~~n~~l~~lv~~~ 146 (392)
...+.|.||||.+.+..+.+.-.=||.-|..|-.+. ..||.||.++..+ .++.+..+++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhc
Confidence 344678999999998744444445899999998544 6799999988854 444454444443
No 139
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.14 E-value=0.91 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
....++|.+...++++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46678999999999999999999999986
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.10 E-value=9 Score=37.49 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQEA 350 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~-----A~~~~~ea 350 (392)
....--+++|+...|+++.|-..|++++.+...+.++..+ ...|..+|.-++.+....+ |+++-+..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r~ 317 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTRL 317 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3456678999999999999999999999998887766554 2233334433333333333 77777777
Q ss_pred HHHHHHh
Q 016307 351 IKRLESL 357 (392)
Q Consensus 351 l~~le~l 357 (392)
+++-.++
T Consensus 318 levA~~I 324 (518)
T KOG1941|consen 318 LEVASSI 324 (518)
T ss_pred HHHHHHh
Confidence 7777766
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.66 E-value=3 Score=35.02 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=61.6
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
+.......++..+|...++.....- . ... ....+.-+|+.+....|++++|+..++.. ....
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~---~--d~~---l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~--- 115 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA---P--DPE---LKPLARLRLARILLQQGQYDEALATLQQI-------PDEA--- 115 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---C--CHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcc---
Confidence 4456667788888887777654321 1 112 22344557888999999999999877441 0000
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
-.......+|+++..+|+.++|...|++++
T Consensus 116 -----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 -----FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 113345678999999999999999999874
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.50 E-value=4.4 Score=34.87 Aligned_cols=82 Identities=6% Similarity=-0.084 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..=.++...+..|++++|...|+-...+ ++ ..+.-+-+||.+++.+|++++|+..|..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~----- 97 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY-------DA-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ----- 97 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Cc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----
Confidence 3345677778889999999999887754 12 2345667889999999999999999988764
Q ss_pred hcCCchHHHHHHHHHHHHHHHh
Q 016307 358 TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+|++...-.+++.++-.+++
T Consensus 98 -L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 98 -IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred -cCCCCchHHHHHHHHHHHcCC
Confidence 346677777777776666554
No 143
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.50 E-value=0.92 Score=29.13 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
+....||++....+.+++|+..|+++|+++++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999987653
No 144
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.15 Score=52.26 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=38.1
Q ss_pred ceecccccccccc---CceeccccCcchHHhHhcCC--CCCCCCccccc-------chhhHHHHHH
Q 016307 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGADIEK-------IEADTTLQDV 142 (392)
Q Consensus 89 ~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~-------~~~n~~l~~l 142 (392)
.+.|+||+..|.. .|+.+-|||+.|+.|+.... .|| |...-.. .+.|+.+-.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~De~~~~~~~~e~p~n~alL~~ 75 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKRDEDSSLMQLKEEPRNYALLRR 75 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCccccchhcChhhcchhHHHHHh
Confidence 5789999887664 59999999999999998774 598 5443222 5556655443
No 145
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.21 Score=48.81 Aligned_cols=32 Identities=41% Similarity=1.048 Sum_probs=25.9
Q ss_pred ceecccccccccc--CceeccccCcchHHhHhcC
Q 016307 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~l~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~ 120 (392)
-+.|.||++...- .-+-+||+|.||+.|+..+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 4789999986431 4677899999999999776
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.40 E-value=2.9 Score=39.28 Aligned_cols=79 Identities=14% Similarity=0.062 Sum_probs=46.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchH
Q 016307 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~ 364 (392)
+....|++++|+..|++.++. .+... .....+-|+|.++..+|++++|+..|+.+++.. ..+|...
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~-------yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~ 217 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKK-------YPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAA 217 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHH-------CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchh
Confidence 333446666666666665543 33321 223456788888888888888887776665544 4445555
Q ss_pred HHHHHHHHHHHHH
Q 016307 365 GLEQRVRFLFQLL 377 (392)
Q Consensus 365 ~l~~~l~~~~~~l 377 (392)
..+.+++.++..+
T Consensus 218 dAl~klg~~~~~~ 230 (263)
T PRK10803 218 DAMFKVGVIMQDK 230 (263)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555433
No 147
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=89.33 E-value=3.8 Score=45.86 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=71.0
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+..++.++...++..+|+..++...+ +.+... ....+++.+....|++++|+..|++++++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------- 672 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALE----LEPNNS-------NYQAALGYALWDSGDIAQSREMLERAHKG------- 672 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 334455566666777777766655432 233332 46788898998999999999999998864
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
.+. .+..+.++|.++..+|++++|+..|++++++-.
T Consensus 673 ~P~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 673 LPD-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 333 245678999999999999999999998886553
No 148
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.57 E-value=0.18 Score=41.46 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=36.1
Q ss_pred ceeccccccccccCceecc---ccCcchHHhHhcCCC-------CCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTP---CSHVYCKACISRFKD-------CPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~---C~h~fC~~Ci~~~~~-------CP~C~~~~~~ 132 (392)
-..|.||.+...+..+.-| ||-+.|-.|....|. ||.|+.++.+
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4689999999886666665 999999999887663 9999987765
No 149
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=0.26 Score=47.39 Aligned_cols=44 Identities=30% Similarity=0.767 Sum_probs=33.0
Q ss_pred CceeccccccccccCceeccccCcch-HHhHhcCCCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYC-KACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC-~~Ci~~~~~CP~C~~~~~~ 132 (392)
...-|.||++-.. +.+-+||||..| ..|-.....||+||..+..
T Consensus 304 ~p~lcVVcl~e~~-~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-SAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCcc-ceeeecCCcEEEchHHHhhCCCCchhHHHHHH
Confidence 3456999999977 789999999876 2333334579999986554
No 150
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.49 E-value=12 Score=33.95 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.++...-+|+.|...+++.+....++++|++..+++.+.+..-.. ..+-+..+--+|.+...+|++++|...|...+..
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 456666788888888888888888999999988888776654232 2233556668899999999999998888766544
Q ss_pred HHHhhcCCchHHHHHHHHHHHHH
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
-. .+....+.+....+|+.
T Consensus 195 ~~----~s~~~~l~~~AR~~w~~ 213 (214)
T PF09986_consen 195 KK----ASKEPKLKDMARDQWQL 213 (214)
T ss_pred CC----CCCcHHHHHHHHHHHHh
Confidence 32 22255667766677764
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=88.48 E-value=4.2 Score=30.49 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHH
Q 016307 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 245 h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla 324 (392)
+++..|+.+++...+.... .. -....-.++...+..|++++|+..+.+ +..... ..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~--------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------~~ 58 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT--------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------NP 58 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG--------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------HH
T ss_pred ccHHHHHHHHHHHHHHCCC--------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------CH
Confidence 4566777777665433221 01 122444589999999999999998887 222111 01
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
...-.+|.++..+|++++|++.|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 22335589999999999999988864
No 152
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.47 E-value=1.4 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.....+|.+....|++++|+..|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999976
No 153
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.44 E-value=4.4 Score=41.03 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
.+...+|.++..+..+...|+..|..+-++-.......--+-..|-.++--+. +. ..|.+++++.+.+.
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--------wk---~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ--------WK---EDINQAENLLRKAI 530 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc--------hh---hhHHHHHHHHHHHH
Confidence 34667777887777888888888876644332211111001111111110000 11 33335556555555
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+-++. .++ ....||.+..++|+.++|+++|+++..+-+..
T Consensus 531 e~Dpk-----ce~--A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 531 ELDPK-----CEQ--AYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred ccCch-----HHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 54553 244 46788999999999999999999998776554
No 154
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.26 E-value=6.5 Score=34.62 Aligned_cols=81 Identities=10% Similarity=0.116 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHH
Q 016307 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRVRFLF 374 (392)
Q Consensus 296 ~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~~l~~~l~~~~ 374 (392)
+-.|+++.+..+......+.....+...+..|-.|+.. .+..++.+++++++.-+++. ..+|..+..+-+++..+
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45788888888888888888655555555555544443 44456778899999999887 88999999999988776
Q ss_pred HHHHhc
Q 016307 375 QLLVVS 380 (392)
Q Consensus 375 ~~l~~~ 380 (392)
-.+.-.
T Consensus 80 ts~A~l 85 (186)
T PF06552_consen 80 TSLAFL 85 (186)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 655543
No 155
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.13 E-value=2.9 Score=37.45 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD-RSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~-~~~g~~~~A~~~~~eal~~le 355 (392)
.....+|.+....|++++|+..|++++++. +.+ ...+..+|.++ ...|+. .+.++..+++
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~-----~~~~A~~~l~ 134 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQH-----MTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCC-----CcHHHHHHHH
Confidence 467788999999999999999999988752 222 34556667653 555653 1233444444
Q ss_pred Hh-hcCCchHHHHHHHHHHHHHHHh
Q 016307 356 SL-TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 356 ~l-~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+. ..+|.+...+.+++..+..++.
T Consensus 135 ~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 135 KALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHhCCCChhHHHHHHHHHHHcCC
Confidence 44 5667777777777776655443
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.12 E-value=2.4 Score=34.83 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+++......|+.++|+..|+++++. .-... +....+-.+|..+..+|++++|+..+++.+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777889999999999999862 10111 2344556789999999999999988887764
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.09 E-value=2.2 Score=40.17 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+.-.+|.+++..|++++|+..|++.+... +... .....+-++|.++..+|+.++|...|+++++..
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-------P~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNY-------PKSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 466799999999999999999998877542 2211 235567888999999999999998888765543
No 158
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.98 E-value=1.3 Score=28.48 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+..||++...-+++.+|++-|++++++.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 46788999888999999999999999999876
No 159
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.95 E-value=0.33 Score=32.84 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=16.8
Q ss_pred cccccccccc-Cceec--cccCcchHHhHhcCC-----CCCCCCccc
Q 016307 92 CMICQALLFE-CSKCT--PCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 92 C~iC~~~~~~-~p~~~--~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
||+|.+.+-. +.... +|+..+|..|+.... .||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6778776521 22333 578888999976653 499999864
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.73 E-value=3.4 Score=34.53 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 283 ~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+......|+++.|+..|.+++.+.- + -+..+++-+.+++.+|+-++|++-++++++
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-------~-------raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-------E-------RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-------c-------chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3344455788888888888776531 1 123344445555555555555544444443
No 161
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=0.3 Score=45.59 Aligned_cols=42 Identities=26% Similarity=0.706 Sum_probs=29.9
Q ss_pred eccccccccccCc----eeccccCcchHHhHhcCC-----CCCCCCccccc
Q 016307 91 SCMICQALLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~~p----~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
.||+|..--+..| .+-+|+|..|.+|+...+ .||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 3888875322122 333899999999998864 49999887665
No 162
>PRK12370 invasion protein regulator; Provisional
Probab=87.50 E-value=2.4 Score=44.31 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
....++.+....|++++|+..|++++++
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4456666777777777777777776654
No 163
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.40 E-value=3.6 Score=30.73 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchH
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA 364 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~ 364 (392)
+.|..+...|.-+...|++++|+..|+++++.|.++ ..-|++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 557778888888999999999999999999999998 4444433
No 164
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.37 E-value=0.53 Score=44.88 Aligned_cols=44 Identities=39% Similarity=0.868 Sum_probs=35.9
Q ss_pred cCceeccccccccccCceeccccCcchHHhHhcC------CCCCCCCcccc
Q 016307 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIE 131 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~ 131 (392)
.+.-.|-||.+-++ =.-.+||+|..|..|-.+. +.||.||....
T Consensus 59 Een~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34567999999877 7788999999999997654 57999997544
No 165
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.22 E-value=10 Score=35.15 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.++-+|-++.+.|+.+.|...|.+++++.-. + ...++||+-.+...|+++.|..++..+.
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~----------p~~~nNlgms~~L~gd~~~A~~lll~a~------ 195 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPN----E----------PSIANNLGMSLLLRGDLEDAETLLLPAY------ 195 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccC----C----------chhhhhHHHHHHHcCCHHHHHHHHHHHH------
Confidence 6678888888999999999999999976211 1 2357999999999999988886554432
Q ss_pred hcCCchHHHHHHHHHHHHHHHh
Q 016307 358 TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
...+.+..+.+|+.-++...+.
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred hCCCCchHHHHHHHHHHhhcCC
Confidence 3445577788888877766554
No 166
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.71 E-value=2 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~ 306 (392)
+.-.+|.+...+|++++|+..|++++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56688999999999999999999999874
No 167
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.55 E-value=7.2 Score=36.50 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
..+|.++..+|+.++|+..|++++ ...|.+..++..++.++...+..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~------~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKAL------KLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHH------HHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHhccccccccccccccccc------ccccccccccccccccccccccc
Confidence 456788888898888887777744 45678888888888877666543
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=4.1 Score=40.16 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~-dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+...+.-|+.+++.|.+..|...|++++...........+....+. .....+.||+..+..++.+.+|++.-..+|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL- 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL- 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 345566777999999999999999999998865421111111111111 222334566666666666655543222221
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHH
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
..+|.|.--+.|.+..+-.
T Consensus 285 -----e~~~~N~KALyRrG~A~l~ 303 (397)
T KOG0543|consen 285 -----ELDPNNVKALYRRGQALLA 303 (397)
T ss_pred -----hcCCCchhHHHHHHHHHHh
Confidence 4445555555554444333
No 169
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.13 E-value=0.25 Score=52.92 Aligned_cols=43 Identities=28% Similarity=0.861 Sum_probs=34.1
Q ss_pred ceeccccccccc------cCceeccccCcchHHhHhcCC------CCCCCCcccc
Q 016307 89 PLSCMICQALLF------ECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~------~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
.-.|+||-.++. ...++..|.|.|-.+|+-.|+ .||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 567999988765 135667799999999999994 4999997654
No 170
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.07 E-value=2.7 Score=39.42 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
..++.+...+|+.++|+..|++++.. .+.+ ...+..+|+++...|+.++|...+++++..++
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~-------~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKL-------NPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHhccccccccccccccccccc-------cccc-------cccccccccccccccccccccccccccccccC
Confidence 45677777778888888888886643 3321 44677899999999999999999999988765
No 171
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=0.31 Score=48.58 Aligned_cols=43 Identities=26% Similarity=0.735 Sum_probs=31.8
Q ss_pred ceecccccccccc----------------CceeccccCcchHHhHhcCC-----CCCCCCcccc
Q 016307 89 PLSCMICQALLFE----------------CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~----------------~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~ 131 (392)
...|+||...+.- .-..+||-|.|-..|+.+|. .||.||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4568999864210 13455999999999999994 5999998764
No 172
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.89 E-value=6.9 Score=35.85 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 282 l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+..++.++|+.+.|...|++++.+. +. -++.|||.|.-+-.+|++++|..+|++++
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~-------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSLA-------PN-------NGDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhcC-------CC-------ccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 3444444555555555555554331 11 12335555555555555555555554443
No 173
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.67 E-value=0.25 Score=33.87 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=20.0
Q ss_pred eeccccccccccCceeccccCcchHHhH--------hcCCCCCCCCcc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGAD 129 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci--------~~~~~CP~C~~~ 129 (392)
|.|||-...+..+.+...|.|..|..=. ...|.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6799999988866777789998664321 112789999863
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.65 E-value=12 Score=33.79 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
...+..++.-|+-...-|++++|.+.|..+|++..
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp 126 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCP 126 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc
Confidence 44556777778888888999999999999998643
No 175
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=85.46 E-value=4.3 Score=36.80 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.-.++.++...|++++|+..|+++++..-. .+ ..+..+-.++.++..+|++++|...+++..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~-------~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD----TP-------ATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC----Cc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788888889999999999888765211 11 335567899999999999999998766544
No 176
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=85.15 E-value=6.5 Score=32.95 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.=.++.+....|++++|+..|++.+... +.. .+..+ ..-.|+.++..+|++++|+..++. +
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d~--~l~~~--a~l~LA~~~~~~~~~d~Al~~L~~-------~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-------PDP--ELKPL--ARLRLARILLQQGQYDEALATLQQ-------I 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCH--HHHHH--HHHHHHHHHHHcCCHHHHHHHHHh-------c
Confidence 33457788888899999999999877632 110 01122 234678999999998888866633 4
Q ss_pred hcCCchHHHHHHHHHHHHHHHh
Q 016307 358 TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
...+........+|.++-..+.
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred cCcchHHHHHHHHHHHHHHCCC
Confidence 3444445555556666655443
No 177
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=84.83 E-value=5.8 Score=39.67 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVR--SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~--sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
....+|.+.+..|++++|+.+|++ +++. .+. ......+|.++..+|+.++|.++|++++..+-
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-------~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE-------QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 445678888889999999999995 4433 222 11245889999999999999999999988876
Q ss_pred Hhhc
Q 016307 356 SLTL 359 (392)
Q Consensus 356 ~l~~ 359 (392)
.+..
T Consensus 402 ~~~~ 405 (409)
T TIGR00540 402 AIQD 405 (409)
T ss_pred cccc
Confidence 5543
No 178
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.81 E-value=0.32 Score=47.08 Aligned_cols=41 Identities=22% Similarity=0.696 Sum_probs=29.0
Q ss_pred eeccccccccccC---ceeccccCcchHHhHhcCC-------CCCCCCccc
Q 016307 90 LSCMICQALLFEC---SKCTPCSHVYCKACISRFK-------DCPLCGADI 130 (392)
Q Consensus 90 l~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~ 130 (392)
-.|.||.+.+... .-+-.|||.|=..|+..|+ .||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 3599997664422 1222499999999999994 499998433
No 179
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=84.16 E-value=17 Score=39.77 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=74.5
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+-+++.|+..++.+-.|+..|+-.....- ..... ..+.-|+..++..|.+.+|......++ ...
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~-------~vl~~Lara~y~~~~~~eak~~ll~a~-------~~~ 746 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRS-------EVLHYLARAWYEAGKLQEAKEALLKAR-------HLA 746 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCH-------HHHHHHHHHHHHhhhHHHHHHHHHHHH-------HhC
Confidence 33456688888999999999886643322 22223 355677777777777777777665554 335
Q ss_pred CCCCcchhHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHh
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRS-----IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~-----~g~~~~A~~~~~eal~~le~l 357 (392)
+.+....|.++..+.+++..... ......|+..++.+.++++.|
T Consensus 747 p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~l 795 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTEL 795 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888754333 355667888888888888888
No 180
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=83.91 E-value=12 Score=41.21 Aligned_cols=132 Identities=11% Similarity=0.117 Sum_probs=80.9
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR---- 307 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~---- 307 (392)
..|..++.|+..+++..++...++++.+.- .... .++|+++..+... ++++|+.++.+++...-
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq 184 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNP-------EIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccH-------HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhc
Confidence 356667778888899999998888775443 3222 4778888888888 99999999999988421
Q ss_pred ---------HHhhcCCCCCcchhHHHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHH
Q 016307 308 ---------DAVKRHSNVPSQVLDVAVSLA------KVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRVR 371 (392)
Q Consensus 308 ---------~~~~~~~~~~~~~~dla~sl~------~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~~l~~~l~ 371 (392)
....-.++....++.+...+. .+.+++.-+=.+=...+.|.+++.+++.+ ..+|.|...+..+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 222333443333222222221 11222222212223444556777777776 77777777777777
Q ss_pred HHHH
Q 016307 372 FLFQ 375 (392)
Q Consensus 372 ~~~~ 375 (392)
..|-
T Consensus 265 ~~y~ 268 (906)
T PRK14720 265 RFYK 268 (906)
T ss_pred HHHH
Confidence 6655
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.85 E-value=3 Score=41.69 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
..|-++|..++.+|++++|++.|-....||.+ ++..+.-++++|..|.
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~le 572 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLE 572 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhh
Confidence 45667888999999999999999888877753 3333444444444443
No 182
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=83.60 E-value=0.76 Score=31.30 Aligned_cols=37 Identities=24% Similarity=0.648 Sum_probs=27.4
Q ss_pred eccccccc-cccCceecccc-----CcchHHhHhcCC------CCCCCC
Q 016307 91 SCMICQAL-LFECSKCTPCS-----HVYCKACISRFK------DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~-~~~~p~~~~C~-----h~fC~~Ci~~~~------~CP~C~ 127 (392)
.|.||++. -...+...||. |.+=..|+.+|. .||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 38899972 12368888985 667789999983 499985
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.60 E-value=16 Score=39.43 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=63.9
Q ss_pred cCCchhhhcHHHHHH----HHHHhCCCCchhhhHHHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----h
Q 016307 244 MGDADAAVAYFADSV----EFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----V 310 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~----e~~~~L~~~~~e~~~~i~-----~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~----~ 310 (392)
.++-..|+.+||.+. +..+-|...-..+.+.+. ...+..|......|+++.|+++|..+-.-.-.. .
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee
Confidence 344556777777651 222222222222222222 234555666677899999999999986632211 0
Q ss_pred hcCCCCCcch----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 311 KRHSNVPSQV----LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 311 ~~~~~~~~~~----~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
......+.++ -|.| +--.||..|++.|+..+|+.+|..|...-.-+
T Consensus 951 qGk~~kAa~iA~esgd~A-AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKA-ACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred ccCchHHHHHHHhcccHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1222 23468899999999999999998887665443
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=83.48 E-value=5.8 Score=38.29 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=60.2
Q ss_pred hhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016307 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~ 318 (392)
.+....++...+...+++..+. .+.. ......++.+.+..|++++|+..|++.+..... ...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~----~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~--- 183 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALEL----NPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSM--- 183 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----Ccc---
Confidence 3444455556665555544332 2221 235677899999999999999999998765321 111
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
-.....-.++.++..+|++++|+..|++++
T Consensus 184 ---~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 184 ---LRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred ---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 111233467889999999999999999884
No 185
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.02 E-value=0.91 Score=40.78 Aligned_cols=41 Identities=24% Similarity=0.647 Sum_probs=32.3
Q ss_pred ecccccccccc-CceeccccCcchHHhHhcC------------CCCCCCCcccc
Q 016307 91 SCMICQALLFE-CSKCTPCSHVYCKACISRF------------KDCPLCGADIE 131 (392)
Q Consensus 91 ~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~------------~~CP~C~~~~~ 131 (392)
-|.+|.-.|.. +-+.+-|-|.|=|.|+.+| ..||.|...+-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 48888876653 4677889999999999987 35999987653
No 186
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=1.2 Score=42.45 Aligned_cols=42 Identities=21% Similarity=0.492 Sum_probs=31.4
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCcc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGAD 129 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~ 129 (392)
+.-.||||+..-.++.++.--|-+||+.|+-.+ ..||+-..+
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 456799999997744444445999999999776 459986654
No 187
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.65 E-value=8.2 Score=27.97 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.|..+.+.|.-....|++++|+..|.+++..|...
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345666777888888999999999999999999988
No 188
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.35 E-value=12 Score=35.54 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...++..++.-|+=.+.-++|++|+..|.+++++ .+.+ ++-+.+-|.+|..+|.++.|++--+.++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-------~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-------DPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------CCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3456667777777777778888888888888765 3332 5678889999999999998886555554
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 352 KRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 352 ~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
. .+|.-.....||+..|-.++.+
T Consensus 143 ~------iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 143 S------IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred h------cChHHHHHHHHHHHHHHccCcH
Confidence 4 4444445566677666655443
No 189
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.24 E-value=30 Score=34.49 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHHhhcCCCCCcchhHH-----------H--HHHHHHHHHHHh
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVKRHSNVPSQVLDV-----------A--VSLAKVADVDRS 336 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~-----------~~~~~~~~~~~~~~~dl-----------a--~sl~~la~~~~~ 336 (392)
.++.+....|+.++|...++++++.. +....-.+.+....... . ..+..+|-++..
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 34556666788889988888887731 11111112221111111 1 344556778888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 337 IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+|++.+|.++|+.+.. +..+|+..... .++.++..++
T Consensus 348 ~~~~~~A~~~le~a~a----~~~~p~~~~~~-~La~ll~~~g 384 (409)
T TIGR00540 348 HGEFIEAADAFKNVAA----CKEQLDANDLA-MAADAFDQAG 384 (409)
T ss_pred cccHHHHHHHHHHhHH----hhcCCCHHHHH-HHHHHHHHcC
Confidence 8998888887773221 12245554433 6666655444
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.24 E-value=3.5 Score=26.89 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVR 371 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~ 371 (392)
.+..+|.++..+|++++|+..|+++++ .+|++......++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA------LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HCcCCHHHHHHhh
Confidence 356789999999999999988877765 4677766655554
No 191
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.39 E-value=13 Score=37.51 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
..++..|++++..++++++|..+|++-|+.......... ++..+..+||.-....+++++|..+-.+++.-
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-------~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-------ETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-------HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 357889999999999999999999999987633222222 35566778898888999999998766555544
No 192
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.34 E-value=5.2 Score=29.97 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~ 368 (392)
.|+++.|+..|++.++.... + .....+-++|.++..+|++++|+..+++ +..++.+....-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-------~-----~~~~~~~~la~~~~~~~~y~~A~~~~~~-------~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-------N-----PNSAYLYNLAQCYFQQGKYEEAIELLQK-------LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-------T-----HHHHHHHHHHHHHHHTTHHHHHHHHHHC-------HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-------C-----hhHHHHHHHHHHHHHCCCHHHHHHHHHH-------hCCCCCCHHHHH
Confidence 46788888888887765322 0 0122345589999999999999988877 222223333333
Q ss_pred HHHHHHHHHHh
Q 016307 369 RVRFLFQLLVV 379 (392)
Q Consensus 369 ~l~~~~~~l~~ 379 (392)
.++.++..|+.
T Consensus 63 l~a~~~~~l~~ 73 (84)
T PF12895_consen 63 LLARCLLKLGK 73 (84)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHhCC
Confidence 45555555544
No 193
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.16 E-value=0.24 Score=36.30 Aligned_cols=40 Identities=35% Similarity=0.706 Sum_probs=22.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC---CCCCCCcccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEKI 133 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~~ 133 (392)
++.||.|...|. .. . ++.+|..|-..+. .||.|..++..+
T Consensus 1 e~~CP~C~~~L~-~~-~---~~~~C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELE-WQ-G---GHYHCEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEE-EE-T---TEEEETTT--EEEEEEE-TTT-SB-EEE
T ss_pred CCcCCCCCCccE-Ee-C---CEEECccccccceecccCCCcccHHHHH
Confidence 467999998866 21 1 7888999987763 499999876553
No 194
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=0.44 Score=35.26 Aligned_cols=41 Identities=24% Similarity=0.656 Sum_probs=28.4
Q ss_pred eccccccccccCceec-cccCcchHHhHhcCC-------CCCCCCcccc
Q 016307 91 SCMICQALLFECSKCT-PCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
.||.|.-.=-+.|.++ -|.|.|=..||.+|. .||.||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3666654422234444 599999999999994 3999998654
No 195
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.05 E-value=5.8 Score=40.40 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------HHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVR--------------------RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN 339 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~--------------------~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~ 339 (392)
..-|+.....|+++.|+..|-+++.+- .+++......+..-.+++..++.+|.....+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 344556666778888888877776531 122222222233334788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 016307 340 EDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLF 374 (392)
Q Consensus 340 ~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~ 374 (392)
+++|+.-|.+.+ ..+|.+..|...+...+
T Consensus 86 ~~eA~~ay~~GL------~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGL------EKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHh------hcCCchHHHHHhHHHhh
Confidence 999998888765 45678888888877665
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.88 E-value=17 Score=32.04 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYG---GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~l~~l~~~~---g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+.+-|.....+ ....++...|++++...++++.=.+..-..+..+.+.+..+|. ...+..+|.++|+++...+
T Consensus 27 nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~---l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 27 NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF---LTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHH
Confidence 444444444333 2345566777777777777766667654444455555554443 2355678889999999999
Q ss_pred HHh-hcCCchHHHHHHHH
Q 016307 355 ESL-TLKPEEAGLEQRVR 371 (392)
Q Consensus 355 e~l-~~~~~~~~l~~~l~ 371 (392)
++. ..+|.+......|.
T Consensus 104 qkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 104 QKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHH-TT-HHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHH
Confidence 988 78888777665544
No 197
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=1.2 Score=40.29 Aligned_cols=40 Identities=25% Similarity=0.653 Sum_probs=33.1
Q ss_pred ccccccccccCceeccccC-cchHHhHhcCCCCCCCCccccc
Q 016307 92 CMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h-~fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
|-.|..--. ...++||.| .+|..|=.....||.|+.....
T Consensus 161 Cr~C~~~~~-~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREA-TVLLLPCRHLCLCGICDESLRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCc-eEEeecccceEecccccccCccCCCCcChhhc
Confidence 999998855 788999998 7799998777789999875443
No 198
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.20 E-value=2.7 Score=43.73 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=47.8
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
.|.|...+.+|..|+..++.+.+ +.+..+++..-+|.=.....+++.|...|+.+|.+- +
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQ-----------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-------~-- 486 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQ-----------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-------P-- 486 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhc-----------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-------c--
Confidence 33455556666677776664421 122333444444444444567777777777776531 1
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
..-+++-.||.||..+++++.|.-+|+.|+
T Consensus 487 -----rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 487 -----RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred -----hhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 112334445556666666555555555444
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=80.16 E-value=4.8 Score=28.49 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 016307 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 367 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~ 367 (392)
..|++++|+..|+++++. .+.+ ....-.++.++..+|++++|...+++.+ ..+|++..+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~------~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-------NPDN-------PEARLLLAQCYLKQGQYDEAEELLERLL------KQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-------TTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCH------GGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCcCHHHHH
Confidence 356777777777776644 4442 2344578999999999887775444332 4455544433
No 200
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=0.94 Score=44.22 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=32.3
Q ss_pred ceeccccccccc--cCceeccccCcchHHhHhcC-------CCCCCCCcc
Q 016307 89 PLSCMICQALLF--ECSKCTPCSHVYCKACISRF-------KDCPLCGAD 129 (392)
Q Consensus 89 ~l~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~ 129 (392)
.|.|||=.+-.. ++|+.+.|||+.|+.=+.+. +.||.|...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 478998665433 27999999999999999876 359999753
No 201
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.77 E-value=0.57 Score=49.12 Aligned_cols=43 Identities=35% Similarity=0.784 Sum_probs=37.2
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC-------CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
.+.|+||...++ .|..+.|-|.||..|+...+ .||+|+..+..
T Consensus 21 ~lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 688999999988 88999999999999997652 49999977665
No 202
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.74 E-value=3.7 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.+.++|.++..+|+++.|+..|++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4568899999999999999999888764
No 203
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.24 E-value=1 Score=41.14 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=27.7
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
+--|.+|+..++ +|++.+=||.||+.||.+.
T Consensus 43 FdcCsLtLqPc~-dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 43 FDCCSLTLQPCR-DPVITPDGYLFDREAILEY 73 (303)
T ss_pred cceeeeeccccc-CCccCCCCeeeeHHHHHHH
Confidence 346899999988 9999999999999999764
No 204
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.08 E-value=0.95 Score=38.59 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.0
Q ss_pred ceeccccccccccCceeccc
Q 016307 89 PLSCMICQALLFECSKCTPC 108 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C 108 (392)
+..||||++... +.|.|-|
T Consensus 2 d~~CpICme~PH-NAVLLlC 20 (162)
T PF07800_consen 2 DVTCPICMEHPH-NAVLLLC 20 (162)
T ss_pred CccCceeccCCC-ceEEEEe
Confidence 467999999977 7777754
No 205
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.91 E-value=4.3 Score=24.02 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
++=++|.++..+|+.++|++.|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999988887653
No 206
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.15 E-value=29 Score=26.76 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=51.1
Q ss_pred cCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH
Q 016307 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl 323 (392)
.+++-.++......-++...-.... .......+.-+++.+....|..++|+..+++++++.++..+.. -+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~--~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~--------~l 80 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSS--SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR--------CL 80 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH--------HH
Confidence 4555555554444433322211111 0334666777799999999999999999999999988764322 35
Q ss_pred HHHHHHHHHHH
Q 016307 324 AVSLAKVADVD 334 (392)
Q Consensus 324 a~sl~~la~~~ 334 (392)
+..+.|+..+.
T Consensus 81 ~~al~~~~~l~ 91 (94)
T PF12862_consen 81 AYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHh
Confidence 55666666544
No 207
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.82 E-value=1.5 Score=46.80 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=35.7
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC-CCCCCCCcc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGAD 129 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~ 129 (392)
+.-.|..|-..|.-+-|...|||+|=..|+.+. ..||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhccCcccCCccchh
Confidence 456899999998878888999999999999854 579999863
No 208
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=76.62 E-value=53 Score=33.35 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+.+.+++....++.++|...++.+. .+.+...- ..-++++.+.+.|..++|+. +....+...
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal----~l~P~~~~-------l~~~~a~all~~g~~~eai~-------~L~~~~~~~ 404 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKAL----ALDPNSPL-------LQLNLAQALLKGGKPQEAIR-------ILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH----hcCCCccH-------HHHHHHHHHHhcCChHHHHH-------HHHHHhhcC
Confidence 3445566667788888877765543 23332222 33456666666677765554 444455556
Q ss_pred CCCCcchhHHHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 314 SNVPSQVLDVAVSLAKV----------ADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l----------a~~~~~~g~~~~A~~~~~eal~~le 355 (392)
+++...-.-+|...+.+ ++.+...|++++|+.++..+.+.++
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 66655444455444443 4455667888888888877776653
No 209
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.40 E-value=8.9 Score=37.03 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=15.1
Q ss_pred hhhhhhhcCCchhhhcHHHHHH
Q 016307 237 LGDCCRAMGDADAAVAYFADSV 258 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~ 258 (392)
++.|+...|-..+|.+.++.++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL 250 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSL 250 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHh
Confidence 4568777887777776665553
No 210
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.16 E-value=20 Score=32.59 Aligned_cols=82 Identities=21% Similarity=0.107 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcCC----ch
Q 016307 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLKP----EE 363 (392)
Q Consensus 291 ~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l---~~~~----~~ 363 (392)
.+++|+..|.-++-..+...++. ..+|...=++|=+++.+|+.+....++++|+..+++. ...| ++
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~-------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKP-------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 56677777766665433221111 1456666678888999999999999999999999887 2222 23
Q ss_pred HHHHHHHHHHHHHHHh
Q 016307 364 AGLEQRVRFLFQLLVV 379 (392)
Q Consensus 364 ~~l~~~l~~~~~~l~~ 379 (392)
..++..+|.+...+++
T Consensus 165 ~~l~YLigeL~rrlg~ 180 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGN 180 (214)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444445555544443
No 211
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=2.1 Score=42.57 Aligned_cols=58 Identities=22% Similarity=0.553 Sum_probs=36.6
Q ss_pred ceeccccccccccC---ceeccccCcchHHhHhcCC----------CCCC--CCccccc-----chhhHHHHHHHHHHH
Q 016307 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----------DCPL--CGADIEK-----IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~l~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----------~CP~--C~~~~~~-----~~~n~~l~~lv~~~~ 147 (392)
...|.||..-.... ..+..|+|.||..|+.++. .||. |...++. +.++ .+.++++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 46799999332322 2256799999999998763 2775 6665554 3333 4555555554
No 212
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.78 E-value=12 Score=38.11 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+...+..+++.|+-.+..|.+++||.+|.++++..-. . ..-++|.+..|+.+|++++-++.-.+++
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-------e-------piFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD-------E-------PIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC-------C-------chhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 3455667788888888999999999999999875221 0 2345777777777777766554433333
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHH
Q 016307 352 KRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 352 ~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
+.+|+-.-.+.|+++...
T Consensus 177 ------El~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 177 ------ELNPDYVKALLRRASAHE 194 (606)
T ss_pred ------hcCcHHHHHHHHHHHHHH
Confidence 444444444444444333
No 213
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.50 E-value=26 Score=26.19 Aligned_cols=39 Identities=23% Similarity=0.073 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 361 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~ 361 (392)
-|..+.+-|......|++++|+.+|.+++..|..+ ...|
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~ 44 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC
Confidence 35556667777788899999999999999999987 4444
No 214
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=75.42 E-value=23 Score=28.95 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=59.5
Q ss_pred hhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016307 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~ 319 (392)
.....|+..+|+++|+.+.+. -|.+. ......-.++.....+|++++|+..+++.+.. .+...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~--gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p~~~-- 72 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAA--GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEE-------FPDDE-- 72 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHc--CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc--
Confidence 344568888999999987542 22221 11234456888888899999999988877642 12100
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.. ...-.-++.+...+|+.++|++.+-+++.
T Consensus 73 ~~--~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LN--AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 11123456788889999999977765553
No 215
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=75.29 E-value=29 Score=37.80 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRD------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
...+..+....|++++|+..+++++...-. .....++. +....+..++.++..+|++++|++.+++++.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~-----~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND-----DWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566778899999888877654210 00011110 1122334556666666666666655554432
Q ss_pred HHHHhhcCCchHHHHHHHHHHHH
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
..|.+..+...++.++.
T Consensus 388 ------~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 388 ------NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred ------hCCCCHHHHHHHHHHHH
Confidence 23444444444444443
No 216
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.16 E-value=34 Score=29.97 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
....|......+++.+...|++++|+..|.++.+. .....+..|+ .=++-.+...++++.....+..++
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~--------~~~~~~~id~---~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDY--------CTSPGHKIDM---CLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------cCCHHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678889999999999999999999999986543 1111222233 223334444457888888877777
Q ss_pred HHHHHH
Q 016307 351 IKRLES 356 (392)
Q Consensus 351 l~~le~ 356 (392)
..+++.
T Consensus 100 ~~~~~~ 105 (177)
T PF10602_consen 100 ESLIEK 105 (177)
T ss_pred HHHHhc
Confidence 777765
No 217
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=74.58 E-value=18 Score=36.06 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.--+|.+....+++++|+.+|++++++ .+. ....-.++.+++.+|+.++|...|++++...
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~-------~P~--------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ-------RPD--------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 445588888889999999999998865 222 1234578999999999999999999998765
No 218
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=74.47 E-value=33 Score=32.30 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=48.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q 016307 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~~le~ 356 (392)
.+|+++.|..+|.++-.+.. .-.......++..+-++|.-....+ +++.|...++++.++++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 46888899999988776544 1222333477777888887666668 999999999999999977
No 219
>PHA03096 p28-like protein; Provisional
Probab=74.16 E-value=1.2 Score=42.34 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=23.9
Q ss_pred eeccccccccccCc-------eeccccCcchHHhHhcC
Q 016307 90 LSCMICQALLFECS-------KCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~ 120 (392)
-.|.||++.....+ ....|-|.||..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 46999998755322 33479999999999998
No 220
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.03 E-value=32 Score=25.23 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.|..+.+-|.-....|++++|+..|.++++.+...
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34555666777777899999999999999999987
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.65 E-value=55 Score=30.90 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 296 ~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
...|.=++.+..+..++.++.- -..+++|+.+..+.|+.+.|..+|+.+.+.-..|
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQE------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred chhhhhhHHHHHHHHHhCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 3455566666666666664422 3457899999999999999999999888776666
No 222
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=73.34 E-value=4.5 Score=43.38 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=32.9
Q ss_pred CceeccccccccccC-cee--ccccCcchHHhHhcC-----------CCCCCCCcccc
Q 016307 88 GPLSCMICQALLFEC-SKC--TPCSHVYCKACISRF-----------KDCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~-p~~--~~C~h~fC~~Ci~~~-----------~~CP~C~~~~~ 131 (392)
..+.|.||.+.+... |+. ..|-|+|=..||..| |.||.|.....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 468899999986632 222 247799999999999 78999985433
No 223
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=73.32 E-value=4.8 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.++...|++++|+..|++++ ..+|.+......++.++..++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~~~~~~g~ 46 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGRILYQQGR 46 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCC
Confidence 5667777888887776666554 5568888888888888776654
No 224
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=73.13 E-value=13 Score=35.78 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.......++.+....|++++|+..|++++++. +.+ ...+..++.++..+|++++|+..+++++...
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 34566778889999999999999999988752 221 3345678999999999999999999887765
Q ss_pred H
Q 016307 355 E 355 (392)
Q Consensus 355 e 355 (392)
.
T Consensus 179 ~ 179 (355)
T cd05804 179 D 179 (355)
T ss_pred C
Confidence 3
No 225
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=73.02 E-value=25 Score=32.56 Aligned_cols=77 Identities=10% Similarity=-0.070 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCc
Q 016307 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 283 ~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~ 362 (392)
+......|++++|+..|++.++. .+... ....+.-++|.++..++++..|+..|++.++.. ..+|.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~ 104 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPN 104 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCc
Confidence 44445578899999988887653 22211 223345689999999999999998888877655 66666
Q ss_pred hHHHHHHHHHH
Q 016307 363 EAGLEQRVRFL 373 (392)
Q Consensus 363 ~~~l~~~l~~~ 373 (392)
.....-.++-.
T Consensus 105 ~~~a~Y~~g~~ 115 (243)
T PRK10866 105 IDYVLYMRGLT 115 (243)
T ss_pred hHHHHHHHHHh
Confidence 66666666544
No 226
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=72.48 E-value=45 Score=34.49 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHH-HHHHHHHHHHhcccc
Q 016307 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ-RVRFLFQLLVVSSLD 383 (392)
Q Consensus 305 ~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~-~l~~~~~~l~~~~~~ 383 (392)
-+++....+.+.+....--..+...++.|+.....|++-+-.+++++.--+-+-....+....+ ..+++|+|+...+.+
T Consensus 376 ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~p~vqeKK~s~IWqFFSrLfss 455 (832)
T KOG2077|consen 376 ARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAVQEKKRSSIWQFFSRLFSS 455 (832)
T ss_pred HHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcCchhhhhccccHHHHHHHHhcC
Confidence 3334443333333322233445567888888889999999899999877665522223334444 478899998877665
Q ss_pred ccC
Q 016307 384 YEN 386 (392)
Q Consensus 384 ~~~ 386 (392)
--+
T Consensus 456 Ss~ 458 (832)
T KOG2077|consen 456 SSN 458 (832)
T ss_pred CCC
Confidence 433
No 227
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=72.14 E-value=87 Score=34.24 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=84.0
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
|-..|-+|++++|...+. +-++. =|.+......++.|+...|+.-++....=. ...|.+.+.
T Consensus 146 AN~lfarg~~eeA~~i~~---EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~ll----AAHL~p~d~ 207 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILM---EVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLL----AAHLNPKDY 207 (895)
T ss_pred HHHHHHhCCHHHHHHHHH---HHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHH----HHhcCCCCh
Confidence 334777888888776542 22221 133455778888888888877666544322 244555444
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
+ ....++++..++|.+..|+-.|.++++. .+.+ -..+-+-+.++...|++..|++.|.+
T Consensus 208 e-------~W~~ladls~~~~~i~qA~~cy~rAI~~-------~p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 208 E-------LWKRLADLSEQLGNINQARYCYSRAIQA-------NPSN-------WELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred H-------HHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCcc-------hHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3 4567788888888889999999998864 2332 22345567888889999999988888
Q ss_pred HHHHH
Q 016307 350 AIKRL 354 (392)
Q Consensus 350 al~~l 354 (392)
.+...
T Consensus 267 l~~~~ 271 (895)
T KOG2076|consen 267 LLQLD 271 (895)
T ss_pred HHhhC
Confidence 77654
No 228
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=72.09 E-value=48 Score=26.40 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=31.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+..+......++..+..+..++...+.+...++...++.....+...+.
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~ 122 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQ 122 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3445555566666777777777778777555566666666555555544
No 229
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=71.90 E-value=45 Score=36.34 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+..++...+..++...|..++++..+. .+.... ....++.+....|++++|+..++++++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~-------a~~~la~~l~~~g~~~eA~~~l~~~l~~------- 112 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDD-------YQRGLILTLADAGQYDEALVKAKQLVSG------- 112 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3455666666777777777777655332 233332 2246666777778888888877776643
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
.+.+ +. +..+|.++..+|+.++|+..|++++++ .|++..+...++.+
T Consensus 113 ~P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~ 159 (765)
T PRK10049 113 APDK-------AN-LLALAYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQA 159 (765)
T ss_pred CCCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 3432 22 556788888888888888777777653 44554444444433
No 230
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=71.73 E-value=1.2 Score=40.40 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=30.5
Q ss_pred ceeccccccc--cccCcee--c-cccCcchHHhHhcCC-----CCC--CCCccccc
Q 016307 89 PLSCMICQAL--LFECSKC--T-PCSHVYCKACISRFK-----DCP--LCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~--~~~~p~~--~-~C~h~fC~~Ci~~~~-----~CP--~C~~~~~~ 132 (392)
+-.||||... |..+.+. - .|-|.+|.+|+.+.+ .|| -|.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 4579999963 3322222 2 499999999998874 499 58775554
No 231
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=71.54 E-value=66 Score=32.02 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=57.7
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHH
Q 016307 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 263 ~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
+|-.+..+++..=..++..|.++-.....|+-|+...-.++...+... -+..++..|...... ++|.+
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~-----------MLv~a~~qL~~~~~~-r~Y~e 135 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQ-----------MLVTAVEQLKELAKK-RQYKE 135 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc-CCHHH
Confidence 333333444444455556666666666667777777777766554432 334455555554443 78888
Q ss_pred HHHHHHHHHHHHHHh---hcCCchHHHHHHHHHH
Q 016307 343 AVDGFQEAIKRLESL---TLKPEEAGLEQRVRFL 373 (392)
Q Consensus 343 A~~~~~eal~~le~l---~~~~~~~~l~~~l~~~ 373 (392)
+...++-+.++++.. ..-|....|..++..+
T Consensus 136 ~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l 169 (383)
T PF04100_consen 136 IASLLQAVKELLEHFKPYKSIPQIAELSKRIDQL 169 (383)
T ss_pred HHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHH
Confidence 888887777777665 4445555555555443
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=71.21 E-value=62 Score=27.26 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=77.4
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.|++-+-.....++...++..|.++.... +.-..+.|+-...+.-+|+.++|+..++++|++.-...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~-----------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-- 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA-----------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-- 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc-----------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--
Confidence 34444444445566677777766554332 22234677888888888999999999999998632211
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------HHHhhcCCchHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR------LESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~------le~l~~~~~~~~l~~~l~~~~~ 375 (392)
.....+.-.-|.+|+.+|+.+.|..-|+.+-.+ .+-+...|..+--.+.+..++.
T Consensus 112 --------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ 172 (175)
T KOG4555|consen 112 --------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD 172 (175)
T ss_pred --------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 122344556689999999999999999887655 2222555554444444545444
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.05 E-value=18 Score=33.94 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
...+.=+||+..+.+|+++.|...|...++. .-+.+. .-..|=+||..+..+|+.++|...|+++++.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~----~P~s~K-------ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKD----YPKSPK-------APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHh----CCCCCC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 4467789999999999999999999988762 111111 12468899999999999999998888877654
No 234
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=70.80 E-value=18 Score=37.56 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
..-++-+....|++++|...|++++++. + . +.++..+|.++...|+.++|++.|++|+.+
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~-------p-------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE-------M-------S-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-------C-------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3344555666799999999999998764 1 1 346788999999999999999999998643
No 235
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.67 E-value=36 Score=32.33 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=69.1
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-G--DLQAARSYYVRSLN 304 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~-g--~l~~A~~~~e~sl~ 304 (392)
|.+.+.+-++|..++..++...|+.-|..+ .+|.++..++. --++++.+.+ | .-.++...|.+++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A----~rL~g~n~~~~-------~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNA----LRLAGDNPEIL-------LGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHH----HHhCCCCHHHH-------HHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 455778889999998889888887777655 34556666543 3444444443 2 45566676666654
Q ss_pred HHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 305 ~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.++.+ ..++.-||..+..+|++.+|+..++..+..
T Consensus 222 -------~D~~~-------iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 222 -------LDPAN-------IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -------cCCcc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 34432 567888999999999999998877765543
No 236
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=70.08 E-value=15 Score=40.62 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
++-.++..+.++|+.+++.+.|++.|+.- ++ -+..|+++|-.+..+ ++++|++++.+|+.++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~-------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-------RD-------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cc-------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 66677888888899999999999988763 33 366789999988888 9999999998887653
No 237
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=69.38 E-value=43 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
-|..+..-|.-....|++++|+.+|.+++..+...
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34455566666777899999999999999999887
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.17 E-value=48 Score=32.91 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=70.8
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHH---hCCCC-chhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLM---KLPMD-DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~---~L~~~-~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~ 308 (392)
..+..|..+...+++..|...|+.+...+. ..... ........-....+|.-.+.++.++.+|+....+.|++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 445556666678888888888777644433 12111 12223334456677777777778888888777776654
Q ss_pred HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 016307 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRF 372 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~ 372 (392)
.+.++ -.|-.-|.++..+|.++.|...|+++++ ..|.|..+..-+..
T Consensus 287 ----~~~N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k------~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 287 ----DPNNV-------KALYRRGQALLALGEYDLARDDFQKALK------LEPSNKAARAELIK 333 (397)
T ss_pred ----CCCch-------hHHHHHHHHHHhhccHHHHHHHHHHHHH------hCCCcHHHHHHHHH
Confidence 33332 2344556667777777777776666654 44555444444333
No 239
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.06 E-value=2 Score=35.75 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=25.5
Q ss_pred ceecccccccccc--Cceecccc------CcchHHhHhcC
Q 016307 89 PLSCMICQALLFE--CSKCTPCS------HVYCKACISRF 120 (392)
Q Consensus 89 ~l~C~iC~~~~~~--~p~~~~C~------h~fC~~Ci~~~ 120 (392)
...|.||++.+.+ -.+.++|+ |.||..|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5789999998775 35556665 67999999999
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=66.58 E-value=16 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
....++.++...|++++|+..|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3457888899999999999999998864
No 241
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.46 E-value=6.9 Score=36.58 Aligned_cols=34 Identities=29% Similarity=0.731 Sum_probs=25.8
Q ss_pred ccCceeccccccccccCceeccc----cCcchHHhHhcC
Q 016307 86 KIGPLSCMICQALLFECSKCTPC----SHVYCKACISRF 120 (392)
Q Consensus 86 ~~~~l~C~iC~~~~~~~p~~~~C----~h~fC~~Ci~~~ 120 (392)
....|.|.+|.+-|.|. --+.| .|.||.-|-.+.
T Consensus 265 ~~apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSRes 302 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRES 302 (352)
T ss_pred CCCceeehhhhhhhccC-ceeecCCCcccceecccCHHH
Confidence 33579999999999954 33345 699999997665
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=66.33 E-value=17 Score=35.90 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...-+|.+....+.+.+|..+|+.++..+.+ +...+.+|.++..+|....|.+.+++++-+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS---------------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4455688888889999999999987754322 446789999999999999999999999943
No 243
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=66.27 E-value=96 Score=27.54 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=80.9
Q ss_pred HHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC
Q 016307 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~ 265 (392)
+...+...+..|++..|...|..-... .+.. +.-...+.+++..+...+++..|+..++..... -
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s----~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~---y- 72 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR-------YPNS----PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL---Y- 72 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---C-
Confidence 445567789999999999988622211 1111 111234556777777888888887777655322 2
Q ss_pred CCchhhhHHHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc------hhHHHHHH-
Q 016307 266 MDDLEIIHTLSVSLNKIGDLKY-----------YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ------VLDVAVSL- 327 (392)
Q Consensus 266 ~~~~e~~~~i~~~~~~l~~l~~-----------~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~------~~dla~sl- 327 (392)
+.... +..++=.+|...+ .++...+|+..|+..++ +-++..-. +..+...|
T Consensus 73 P~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-------~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 73 PNSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-------RYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp TT-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-------H-TTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-------HCcCchHHHHHHHHHHHHHHHHH
Confidence 22211 2222222222221 22233445555555443 33321100 01222222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 328 ---AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 328 ---~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
=.+|..|...|.+..|+..++.+++..- ..+.....+..+...+..|+.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCC
Confidence 2357788889999999988877666542 222233345555555555543
No 244
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=66.16 E-value=72 Score=31.68 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHhhc-CCCCCcchhHH-----------HHHHHHHHHHHHhcCCHHHH
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRR-----DAVKR-HSNVPSQVLDV-----------AVSLAKVADVDRSIGNEDVA 343 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~-----~~~~~-~~~~~~~~~dl-----------a~sl~~la~~~~~~g~~~~A 343 (392)
.++......|+.++|....+++++..- ..... ...+....... +..+--+|.+....+++.+|
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 446666677899999988888876210 00110 01111112222 22334467788888999999
Q ss_pred HHHHHHHHHH
Q 016307 344 VDGFQEAIKR 353 (392)
Q Consensus 344 ~~~~~eal~~ 353 (392)
.++|+.++++
T Consensus 348 ~~~le~al~~ 357 (398)
T PRK10747 348 SLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc
Confidence 9888887765
No 245
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.12 E-value=53 Score=24.54 Aligned_cols=36 Identities=28% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..|..+...|.-....|++++|+.+|+++++.|-..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 446677888888888999999999999999999874
No 246
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=65.69 E-value=2.6 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=21.5
Q ss_pred cccCcchHHhHhcCC----CCCCCCcccc
Q 016307 107 PCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
-|-|.|=..||.+|. .||++|++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 499999999999994 4999998654
No 247
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=65.66 E-value=74 Score=26.03 Aligned_cols=64 Identities=27% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHhccccccCCC
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVVSSLDYENLD 388 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 388 (392)
+..+-++|.+.... ..+.+...+++-.+.++.- ....-...+..++..+-..+..-.+++.+..
T Consensus 53 ~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~ 118 (119)
T COG1382 53 APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118 (119)
T ss_pred cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 45567788877775 7778888888888877654 3333455566667766666666666665543
No 248
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=64.80 E-value=2.8 Score=33.13 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=25.0
Q ss_pred CceeccccccccccC-ceeccccCcchHHhHhc
Q 016307 88 GPLSCMICQALLFEC-SKCTPCSHVYCKACISR 119 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~ 119 (392)
..-.|++|...|.+. -++.||||.|...|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 355699999988754 45669999999999753
No 249
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=64.63 E-value=30 Score=32.23 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
+-++......|++..|+..|.+++.. .+.+ ...++-+|.++.++|+.+.|-.-|.+++++.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l-------~p~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----- 164 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARL-------APTD-------WEAWNLLGAALDQLGRFDEARRAYRQALELA----- 164 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcc-------CCCC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----
Confidence 33666676677777777766665533 3332 5567889999999999999998777776554
Q ss_pred CCchHHHHHHHHHHHH
Q 016307 360 KPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 360 ~~~~~~l~~~l~~~~~ 375 (392)
|.+..+.+|++.++.
T Consensus 165 -~~~p~~~nNlgms~~ 179 (257)
T COG5010 165 -PNEPSIANNLGMSLL 179 (257)
T ss_pred -cCCchhhhhHHHHHH
Confidence 456667777776543
No 250
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=64.35 E-value=2.1e+02 Score=31.49 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHH---hhcCCCCCcchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 287 YYGGDLQAARSYYVRSLNVRRDA---VKRHSNVPSQVL---DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~sl~~~~~~---~~~~~~~~~~~~---dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
...++++.|+++|+++=.-..++ +.+.+....+-. .--..+.|-|.-.+..|..+.|+.+|..|...+-.+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~V 945 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMV 945 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhe
Confidence 35678999999999963221111 111111111100 002457888999999999999999999999888665
No 251
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=64.10 E-value=1.8 Score=48.33 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=38.5
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+...|.+|++++++.-.+.-|||.+|..|+..| ..||.|......
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 467899999999978889999999999999988 359999865544
No 252
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=64.03 E-value=20 Score=36.26 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchH---HHHHHHHHHHHHHHh
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA---GLEQRVRFLFQLLVV 379 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~---~l~~~l~~~~~~l~~ 379 (392)
.+.+....++|.++..+|++++|+..|++++++ +|+++ ....|++.+|..++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREE 127 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCC
Confidence 356778899999999999999999999988876 34444 346666666655543
No 253
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=63.96 E-value=16 Score=26.09 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=26.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
..++...+++++|++.++.++.+ +|++..+...++.++..++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~ 45 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRY 45 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccH
Confidence 34566667776666555555443 566666666666666655544
No 254
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.95 E-value=79 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~l 354 (392)
|+++..+|+-++|..-|++++...
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 677888888888888888877765
No 255
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=63.77 E-value=26 Score=38.11 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..-.+.+.....|.+.+|+.+|...+. ....+ .+..+-++|..+..+|.++.|+++|+.++
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl------ 476 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITN-------REGYQ------NAFVWYKLARCYMELGEYEEAIEFYEKVL------ 476 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhc-------Ccccc------chhhhHHHHHHHHHHhhHHHHHHHHHHHH------
Confidence 444555566666666666666655432 22221 13344556666666666666666665544
Q ss_pred hcCCchHHHHHHHHHHHHHHHhcc
Q 016307 358 TLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
...|++....-.|.++++.+++..
T Consensus 477 ~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 477 ILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred hcCCCchhhhhhHHHHHHhcCCHH
Confidence 344555555555666665555443
No 256
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.75 E-value=56 Score=23.98 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+-|..+-.-|.-....|++++|+..|.++++.+...
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334445556666677899999999999999999987
No 257
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=62.55 E-value=81 Score=32.74 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
-..|..+..+|++-.|+..|....++++....
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 34588999999999999999999999998843
No 258
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=62.34 E-value=54 Score=24.32 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
|..|-+-|.-....|++++|+.+|.+++..+...
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444555666667799999999999999999886
No 259
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=62.30 E-value=1.5 Score=41.19 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=23.5
Q ss_pred eeccccccccccC--ceeccccCcchHHhHhcC
Q 016307 90 LSCMICQALLFEC--SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 l~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~ 120 (392)
-.|.||+--|-+. ...++|-|-|=..|+.++
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 4588888766544 467789999988998775
No 260
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.23 E-value=75 Score=30.92 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchHHHH
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLE 367 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~~l~ 367 (392)
.++.++|+++.++..+..+...+ +. .+.-.....+.++-.+|+++++.+.+.+...+++++ ...+..+...
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e--~~------av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKE--PD------AVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhcc--ch------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34777888888877765544322 21 334445566677778999999999999999999998 5555466666
Q ss_pred HHHHHHHH
Q 016307 368 QRVRFLFQ 375 (392)
Q Consensus 368 ~~l~~~~~ 375 (392)
+.+++.|.
T Consensus 160 Y~lssqYy 167 (380)
T KOG2908|consen 160 YSLSSQYY 167 (380)
T ss_pred HHHHHHHH
Confidence 67666543
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.29 E-value=86 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.086 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 330 VADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+.+.+..|+.--+..--+++.+.+++.
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 3334444444444444444455444443
No 262
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.25 E-value=52 Score=34.11 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 295 A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
-...|.+++.-.+.++...+.+ ....++||..+.+=.+..+|++.|++|+++-
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd-------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPND-------YLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCch-------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 3348889999888888888763 5678999999999899999999999998753
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.07 E-value=14 Score=22.66 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~ 344 (392)
..++.++|.++..+|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 568899999999999999886
No 264
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.78 E-value=4.5 Score=38.32 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=30.9
Q ss_pred ceecccccccccc--CceeccccCcchHHhHhcC-------CCCCCCCc
Q 016307 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF-------KDCPLCGA 128 (392)
Q Consensus 89 ~l~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~ 128 (392)
.+.||+=.+.-.+ +|+.+.|||+.-+.-+... +.||.|..
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4789976665443 7999999999988887665 35999964
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.23 E-value=18 Score=21.19 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
++=+++.+....|+.++|+..|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3446788888889999999998887753
No 266
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.19 E-value=53 Score=32.24 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=51.6
Q ss_pred HHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhH
Q 016307 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~ 273 (392)
+.+.+++.|.+.+.+....-++ .....--|++.|..+.+++.+|...|+...+ . .....+
T Consensus 33 ls~rDytGAislLefk~~~~~E-------------EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~---~~~~~e--- 92 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDRE-------------EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-K---DDAPAE--- 92 (557)
T ss_pred HhcccchhHHHHHHHhhccchh-------------hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-c---CCCCcc---
Confidence 4556677777766543311111 1134556888999999999988877765432 1 111111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~s 302 (392)
..-++.-.+..+|.+.+|.+.-+++
T Consensus 93 ----l~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 93 ----LGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHhhC
Confidence 2346677778888888888766654
No 267
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.17 E-value=13 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
....+|.++..+|+.++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456789999999999999987753
No 268
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.99 E-value=2.3e+02 Score=29.80 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--------HHHH------------HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHH
Q 016307 283 GDLKYYGGDLQAARSYYVRSLN--------VRRD------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 283 ~~l~~~~g~l~~A~~~~e~sl~--------~~~~------------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
+.+.|.+|.+++|...|+..+. .++. .++..++... +--..+-|.|-++...|+|.+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e---~syel~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE---DSYELLYNTACILIENGKYNQ 193 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc---chHHHHHHHHHHHHhcccHHH
Confidence 5566777888888888887643 1111 1122222221 122345677888889999999
Q ss_pred HHHHHHHHHHHHHHh
Q 016307 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~~le~l 357 (392)
|++.++.++.+.++-
T Consensus 194 A~elL~kA~~~~~e~ 208 (652)
T KOG2376|consen 194 AIELLEKALRICREK 208 (652)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999997765
No 269
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.53 E-value=3 Score=44.88 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=25.0
Q ss_pred ceeccccccccccC-ceeccccCcchHHhHhcC
Q 016307 89 PLSCMICQALLFEC-SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~l~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~ 120 (392)
.-+|.+|...|... -++.+|||.|=+.|+.+.
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 34699999866544 456799999999999764
No 270
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.52 E-value=1.2e+02 Score=26.93 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~ 360 (392)
..+......|++.+|+..|++.+.. .+... -...+.=++|.++..+|++..|+..|++.+... ..+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~ 75 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR-------YPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNS 75 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--------TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-------CCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCC
Confidence 4455566778899998888886654 22111 123345688999999999999998887766543 566
Q ss_pred CchHHHHHHHHHH
Q 016307 361 PEEAGLEQRVRFL 373 (392)
Q Consensus 361 ~~~~~l~~~l~~~ 373 (392)
|.....+-.++..
T Consensus 76 ~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 76 PKADYALYMLGLS 88 (203)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 6555555555544
No 271
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.95 E-value=16 Score=38.98 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=43.4
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
-|++....|+..+++.+|.....+...+.-..-..-..+...+...|.-..++|+++.|+..|.++--+++
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 34455556777777777765433322221111111234455677788888899999999999988755443
No 272
>PRK14574 hmsH outer membrane protein; Provisional
Probab=58.53 E-value=61 Score=35.74 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=16.4
Q ss_pred HHHHHHHhhcHHHHHHhhhcc
Q 016307 189 QAMRAFRAQNVESAKSRLSLC 209 (392)
Q Consensus 189 ~a~~~~~~~~~~~A~~~~~~c 209 (392)
.++..++.|+++.|...|..+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qa 60 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEE 60 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHH
Confidence 356789999999988887644
No 273
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.37 E-value=7.2 Score=37.37 Aligned_cols=43 Identities=21% Similarity=0.509 Sum_probs=28.7
Q ss_pred eecccccccccc---CceeccccCcchHHhHhcC-----CCCCCCCccccc
Q 016307 90 LSCMICQALLFE---CSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
-.||+|.+.+-. .-+--+||-..|.-|+.-. ..||.||.....
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 349999975321 2333468887788887544 349999986654
No 274
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=57.75 E-value=64 Score=31.30 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 016307 330 VADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~ea 350 (392)
+|++....|++++|++.++.+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHhccchHHHHHHHHHH
Confidence 455666666666666554443
No 275
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.72 E-value=46 Score=24.85 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..|-+-|......|++++|+.+|.++++.+...
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 334444555556799999999999999999774
No 276
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=57.11 E-value=1.1e+02 Score=29.25 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
++-.|+..|+++.++.+...=...++ | +..+++|..+ ++..+.+++++..||+.|
T Consensus 177 elrqA~eKfEESkE~aE~sM~nlle~-----d-~eqvsqL~~L------i~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 177 ELRQALEKFEESKELAEDSMFNLLEN-----D-VEQVSQLSAL------IQAQLDFHRQSTQILQEL 231 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----C-HHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 56788888888888766543221111 0 1223333322 234677788888888777
No 277
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=56.47 E-value=1e+02 Score=26.49 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc------CCchHHHHHHHHHHHHHHHh
Q 016307 340 EDVAVDGFQEAIKRLESLTL------KPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 340 ~~~A~~~~~eal~~le~l~~------~~~~~~l~~~l~~~~~~l~~ 379 (392)
+..-+.+|.+...+.++|.. .+.-..++.++...+.||..
T Consensus 68 I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~ 113 (157)
T PF04136_consen 68 ISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEE 113 (157)
T ss_pred HHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776621 12233466667777777664
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.13 E-value=54 Score=32.06 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HH--h--hcCCCCCcchhHHHHHHHHH-HHHHHhcCCHHHHHHH
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRR--------DA--V--KRHSNVPSQVLDVAVSLAKV-ADVDRSIGNEDVAVDG 346 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~--------~~--~--~~~~~~~~~~~dla~sl~~l-a~~~~~~g~~~~A~~~ 346 (392)
++-|+-+.++|.+++|+..|.+++...= .+ . .+..+.++.-..+|..|+.+ ..+|.+.|....++..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5668888889999999999999876311 00 0 01111222234566666654 3577777777788888
Q ss_pred HHHHHHHHHHh-hcCCchHHHHHHHHH
Q 016307 347 FQEAIKRLESL-TLKPEEAGLEQRVRF 372 (392)
Q Consensus 347 ~~eal~~le~l-~~~~~~~~l~~~l~~ 372 (392)
..++-+-.|.+ ...|.+..|...++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 88888888776 667776665555443
No 279
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.80 E-value=8.3 Score=36.31 Aligned_cols=40 Identities=28% Similarity=0.770 Sum_probs=32.0
Q ss_pred ceecccccccccc---CceeccccCcchHHhHhcC----CCCCCCCc
Q 016307 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGA 128 (392)
Q Consensus 89 ~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~ 128 (392)
...||||.+.+++ .+..++|||..=..|++.. ..||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4559999987764 5788899998877887765 57999987
No 280
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=4 Score=32.14 Aligned_cols=23 Identities=39% Similarity=0.869 Sum_probs=19.8
Q ss_pred cccCcchHHhHhcCC----CCCCCCcc
Q 016307 107 PCSHVYCKACISRFK----DCPLCGAD 129 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~ 129 (392)
.|-|.|=..||.+|. .||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999994 49999864
No 281
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=55.52 E-value=74 Score=30.01 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHhccccc
Q 016307 337 IGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVVSSLDY 384 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~~~~~~ 384 (392)
..++..++..+......+..+ ...+....++.++..+...+..+.-..
T Consensus 229 ~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~~~l 278 (291)
T TIGR00996 229 DDALDDALAALSGASAQVRDLLAENRPNLPQALANLAPVLTLLVDYHPEL 278 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcchhH
Confidence 345555555555555544444 344555556777666666665554443
No 282
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.92 E-value=79 Score=30.79 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.+.||.-+..+|-+..|...|+++|+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q 252 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ 252 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc
Confidence 467888888889999999988888774
No 283
>PRK14574 hmsH outer membrane protein; Provisional
Probab=53.91 E-value=1.2e+02 Score=33.60 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=7.4
Q ss_pred HHHHHHHhcCCHHHHH
Q 016307 329 KVADVDRSIGNEDVAV 344 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~ 344 (392)
.++.++..+++.++|+
T Consensus 141 gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 141 GMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHHHHhhcCCHHHHH
Confidence 3344445545444444
No 284
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.85 E-value=1.2e+02 Score=29.89 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred hhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHH
Q 016307 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLK 286 (392)
Q Consensus 238 C~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~ 286 (392)
..|+...++...|+.-... ..+|.....+..-.|+..+-.+|++.
T Consensus 196 akc~i~~~e~k~AI~Dlk~----askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQ----ASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHHhcCcHHHHHHHHHH----HHhccccchHHHHHHHHHHHhhhhHH
Confidence 3455556666555544332 24555555554444444444444444
No 285
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.63 E-value=1.2e+02 Score=29.81 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
.+.-.-|.+..++|++++|...|...|+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 3445567888899999999999998775
No 286
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=52.54 E-value=37 Score=32.84 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 282 l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
+|.+....|++++|+..++. +.+.+++ -+...+..|...|..+|+.++.+.++..+.+..
T Consensus 220 lG~v~~~~g~y~~AV~~~e~-------v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 220 LGRVELAKGDYQKAVEALER-------VLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred hhHHHHhccchHHHHHHHHH-------HHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 45555555555555554444 3344444 344557788889999999999888887776543
No 287
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.26 E-value=1.5e+02 Score=28.04 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 016307 337 IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l 357 (392)
.|+|..|++.+.+...+++.+
T Consensus 140 ~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 140 EGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 499999999999988888776
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.12 E-value=2.1e+02 Score=26.75 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=67.9
Q ss_pred hcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016307 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 243 ~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g-~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~ 321 (392)
.+++..-|..++.........+ .++....++...=++|.-....+ +++.|...+++++++.....+.........-
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~---~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSL---DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcC---CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 4567777777777776666533 34556788889999999999999 9999999999999987653221111111111
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
-....+.-++.++...+..+ .++++..+++.+
T Consensus 82 lr~~iL~~La~~~l~~~~~~----~~~ka~~~l~~l 113 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYE----SVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHH
Confidence 12234556666666655543 233445554444
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.08 E-value=1.1e+02 Score=23.23 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=42.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
...+.++|+..+.++|+. ..... +.=..|..+..++...|++++.+.+--+.+.+-+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k-------~~~~~----~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-------ITDRE----DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred ccchHHHHHHHHHHHHhh-------cCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445666666666666654 33211 3334678899999999999999998888888877663
No 290
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.58 E-value=3.7e+02 Score=29.33 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHhhcCCCCCcchhHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVR------SLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~------sl~~~~~~~~~~~~~~~~~~dla~sl~-~la~~~~~~g~~~~A~~~~~eal 351 (392)
..+.|++..+..++++|+.+|.+ ++++.+-+. ++ + .+.|. .-|+-++.+|+++.|+..|-++-
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~------e-vv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PE------E-VVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cH------H-HhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 34557777777777777776665 333322221 11 1 22232 44777888899999999888877
Q ss_pred HHHHHh
Q 016307 352 KRLESL 357 (392)
Q Consensus 352 ~~le~l 357 (392)
....-+
T Consensus 734 ~~~kai 739 (1636)
T KOG3616|consen 734 CLIKAI 739 (1636)
T ss_pred hHHHHH
Confidence 666555
No 291
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.19 E-value=7.5 Score=38.08 Aligned_cols=24 Identities=29% Similarity=0.988 Sum_probs=18.1
Q ss_pred ccCcchHHhHhcCC-----------------CCCCCCcccc
Q 016307 108 CSHVYCKACISRFK-----------------DCPLCGADIE 131 (392)
Q Consensus 108 C~h~fC~~Ci~~~~-----------------~CP~C~~~~~ 131 (392)
|....|..|+.+|+ .||.||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34456999999983 2999998764
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=49.43 E-value=54 Score=33.61 Aligned_cols=93 Identities=11% Similarity=0.234 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCC--CCCcch------hH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 291 DLQAARSYYVRSLNVRRDAVKRHS--NVPSQV------LD---VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 291 ~l~~A~~~~e~sl~~~~~~~~~~~--~~~~~~------~d---la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
.+.++...|+++++.-+....+.. +..+.. .+ ..-.-..||.....+|+.++|++.|++.++..-.+
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-- 292 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-- 292 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--
Confidence 477888889998886555443321 111111 01 12223468888889999999998888877654221
Q ss_pred CCchHHHHHHHHH------HHHHHHhccccccCC
Q 016307 360 KPEEAGLEQRVRF------LFQLLVVSSLDYENL 387 (392)
Q Consensus 360 ~~~~~~l~~~l~~------~~~~l~~~~~~~~~~ 387 (392)
++..+..++.. .|..++.-...|+++
T Consensus 293 --~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 293 --DNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred --chhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 12223333332 255555555666654
No 293
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=49.37 E-value=12 Score=39.82 Aligned_cols=57 Identities=16% Similarity=0.434 Sum_probs=39.6
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC-----------CCCCCCCccccc--chhhHHHHHHHHHHHh
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-----------KDCPLCGADIEK--IEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----------~~CP~C~~~~~~--~~~n~~l~~lv~~~~~ 148 (392)
.|.|+|+.-.+.-+.+...|.|. .|+... |.||+|.+.... +..+..+.+++.....
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred EecCCcccceeecCCcccccccc---eecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 68999997765545666666664 454332 779999986655 7777777777766543
No 294
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=94 Score=25.92 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVV 379 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~ 379 (392)
|=+...-..|...-..+++.++-+.+..+..|+..| ..+.+. ..+-.++..+|.++-.
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~ 89 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVR 89 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHH
Confidence 433333344555555678888888888888888877 444443 3366667777766644
No 295
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=48.91 E-value=1.4e+02 Score=24.57 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA--------VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla--------~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
...++.+.++..+++++.+.+...=.......++.... ..+..++..+...|++++|+..++.++ .
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l------~ 90 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL------A 90 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH------h
Confidence 34567788888888888876643222211123332222 233445566666677776665444433 5
Q ss_pred cCCchHHHHHHHHHHHHHH
Q 016307 359 LKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 359 ~~~~~~~l~~~l~~~~~~l 377 (392)
.+|.+..+-..+-..+..+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~ 109 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQ 109 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHC
Confidence 5666666555544444333
No 296
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.04 E-value=10 Score=22.13 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=3.7
Q ss_pred ccccccc
Q 016307 92 CMICQAL 98 (392)
Q Consensus 92 C~iC~~~ 98 (392)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 5555544
No 297
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.68 E-value=2.4e+02 Score=29.48 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHH---hhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL------NVRRDA---VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl------~~~~~~---~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
...+....++|..+.-+.|++++-...+.+.- +....+ +..+.+......-+..++..|.++...-+.+.+
T Consensus 187 ~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~ 266 (557)
T COG0497 187 ADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSE 266 (557)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHH
Confidence 34455555555555555566554444333321 111122 211111122233344445555544444455666
Q ss_pred HHHHHHHHHHHHHHh
Q 016307 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~~le~l 357 (392)
..+.+.+++..++.+
T Consensus 267 ~~~~l~ea~~~l~ea 281 (557)
T COG0497 267 LAELLEEALYELEEA 281 (557)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555554443
No 298
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.20 E-value=1.5e+02 Score=27.57 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHhhcC--CchHH
Q 016307 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD----GFQEAIKRLESLTLK--PEEAG 365 (392)
Q Consensus 292 l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~----~~~eal~~le~l~~~--~~~~~ 365 (392)
.+.|...|++++++.+..+. +.+ -..|...||---..|+.+++.++|.+ .|++++..++.+..+ .+..-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~--pt~---PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstl 218 (244)
T smart00101 144 AENTLVAYKSAQDIALAELP--PTH---PIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTL 218 (244)
T ss_pred HHHHHHHHHHHHHHHHccCC--CCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHH
Confidence 45778888888887554221 111 12455566666678888999999884 455566666666222 23334
Q ss_pred HHHHHHHHH
Q 016307 366 LEQRVRFLF 374 (392)
Q Consensus 366 l~~~l~~~~ 374 (392)
+++.|.+.+
T Consensus 219 ImqLLrDNL 227 (244)
T smart00101 219 IMQLLRDNL 227 (244)
T ss_pred HHHHHHHHH
Confidence 555555433
No 299
>PLN03077 Protein ECB2; Provisional
Probab=47.08 E-value=3.1e+02 Score=30.23 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=30.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
....|.+++|...|+++.+.. .-.+. ...++.+.+++...|++++|.+++++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~----gi~P~--------~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKY----SITPN--------LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHh----CCCCc--------hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 344566667777766654221 11111 235566777777777777777766653
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=47.01 E-value=37 Score=29.74 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
++...+..+|+.+...|+++.|++.|.++....
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 456678899999999999999999998876543
No 301
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=46.87 E-value=2.4e+02 Score=26.06 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Q 016307 319 QVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~~le~l 357 (392)
.++|-|.-++.-|.+.+..| ++......|..|+-+|+.|
T Consensus 160 LiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~lLe~L 199 (238)
T PF12063_consen 160 LIYDRALEMSRTAAVDELFGENLEGCEQRYETAIWLLEAL 199 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHH
Confidence 34688889999999999999 9999999999999999998
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.79 E-value=1.5e+02 Score=28.12 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=41.7
Q ss_pred CchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 246 DADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 246 ~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
+...|++-++.+.+ |.+...+|- =.+++.+-.+.+.++.+++-...|.+.|..++.++.+.-.
T Consensus 42 ~p~~Al~sF~kVle----lEgEKgeWG---FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 42 EPKEALSSFQKVLE----LEGEKGEWG---FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CHHHHHHHHHHHHh----cccccchhH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33455555555443 334444441 1255666678888999999999999999988887766543
No 303
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.47 E-value=2.7e+02 Score=26.49 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------hhc--------CCCCCcch----------hHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA--------VKR--------HSNVPSQV----------LDVAVSLAKVA 331 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~--------~~~--------~~~~~~~~----------~dla~sl~~la 331 (392)
....+|.+.++.|+.+.|..+|++.-+.-... ..+ ....++.. -.-+...++.|
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 45788999999999999999998432211100 000 00000000 01234567778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
..+--+|++..|++..+++. +.+..+--+.+++-|+-+.|..-
T Consensus 294 LcllYlg~l~DAiK~~e~~~---~~~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMV---QQDPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccCCccchhhhHHHHHHHHHHHH
Confidence 88878888888875555444 33444445566666666655443
No 304
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.46 E-value=53 Score=32.91 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 327 LAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
-.+||++...+..+++|+++|..++.+
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 467888888888888888888766543
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.38 E-value=38 Score=22.44 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 329 KVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.||.+|..+|+.+.|.+.+++.+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 478889999999999887777663
No 306
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=46.28 E-value=1.6e+02 Score=24.06 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.........+.......|++++|+..+.+.+.+ ++-+ -.....+-.++..+|+...|+..|++...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-------dP~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALAL-------DPYD-------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334456677777777788888888877776653 3321 22345667788889999999999999999
Q ss_pred HHHH-hhcCCc
Q 016307 353 RLES-LTLKPE 362 (392)
Q Consensus 353 ~le~-l~~~~~ 362 (392)
.+.+ +...|.
T Consensus 125 ~l~~elg~~Ps 135 (146)
T PF03704_consen 125 RLREELGIEPS 135 (146)
T ss_dssp HHHHHHS----
T ss_pred HHHHHhCcCcC
Confidence 9885 555443
No 307
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.27 E-value=1.2e+02 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
|..+-..|.-....|++++|+..|.+++..+...
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445555666666799999999999999999886
No 308
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.10 E-value=21 Score=39.43 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=34.7
Q ss_pred cCceeccccccccccCceeccccC-----cchHHhHhcC--CCCCCCCccccc
Q 016307 87 IGPLSCMICQALLFECSKCTPCSH-----VYCKACISRF--KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~--~~CP~C~~~~~~ 132 (392)
....+|+-|-.... ..++..||. .||..|-... ..||.|......
T Consensus 624 Vg~RfCpsCG~~t~-~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKETF-YRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCcCC-cccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 34677999998866 778888984 5899996554 359999988776
No 309
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.42 E-value=10 Score=38.47 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=27.5
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
....|.||.+.+......+.|+|.||..|+..+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~y 101 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGY 101 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHH
Confidence 457899999986634778899999999999876
No 310
>PF15556 Zwint: ZW10 interactor
Probab=45.29 E-value=2.3e+02 Score=25.43 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=34.8
Q ss_pred hhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016307 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 248 h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~ 301 (392)
.+++..-+.+.+++.........+...+..++-++.+...+..++++|+..+..
T Consensus 59 qkai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqa 112 (252)
T PF15556_consen 59 QKAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQA 112 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666554444455666666777777777777777777776654
No 311
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.21 E-value=2.2e+02 Score=25.85 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=56.9
Q ss_pred hhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016307 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 242 ~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~ 321 (392)
...|++-.|..-|..++++...+.. ...+....+-+-...+++.++.|+....+++++--.
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~------e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------------- 166 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTST------EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------------- 166 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccH------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-------------
Confidence 3566777777777666655443322 223334444455555677777888777777764211
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
-..+|..-|.+|+.+..++.|++-|++.+++
T Consensus 167 -y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 -YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 1223456677888888888888888776655
No 312
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.11 E-value=65 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.|...-..|.-.+..|+.+.|+.+|+.++.++++-
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344333444544455699999999999999999886
No 313
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=44.97 E-value=78 Score=30.13 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
..++.++.+...+|++++|.+.+++++ ..+|.+..++.|+..+...++..
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al------~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEAL------EKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHC------CC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH------HhccCCHHHHHHHHHHHHHhCCC
Confidence 457888999999999999998877753 56788888888887776666554
No 314
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=44.66 E-value=3.6e+02 Score=29.81 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC---C---CCC--cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRH---S---NVP--SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 283 ~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~---~---~~~--~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+|..-..++.+|++.|.+.|...-..-... + .+. ...-|+-.-+..+-.+-+. |+-++|.+.+++...++
T Consensus 492 eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~-G~~~~A~q~L~qlq~mm 570 (820)
T PF13779_consen 492 EEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARS-GRMDEARQLLEQLQQMM 570 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 3444445667788888888887543322111 1 111 1123555555555555555 99999999999999999
Q ss_pred HHh
Q 016307 355 ESL 357 (392)
Q Consensus 355 e~l 357 (392)
+++
T Consensus 571 enm 573 (820)
T PF13779_consen 571 ENM 573 (820)
T ss_pred Hhc
Confidence 999
No 315
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.80 E-value=62 Score=36.81 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.+..+...+..|..+.+..++.++|+.+-.++.-+.+........ +.+....+++......++...|+.-+..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~------~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP------NTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH------HHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 455566667777788888888888888777776666555554443 44566777777777777888899888888
Q ss_pred HHHHHHh--hcCCchHHHHHHHHHHHHHHHhc
Q 016307 351 IKRLESL--TLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 351 l~~le~l--~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+.++--. +.+|+-+.+..+++-+++.+..+
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 8887554 77898888888877776665544
No 316
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=43.46 E-value=21 Score=24.54 Aligned_cols=24 Identities=29% Similarity=1.046 Sum_probs=12.1
Q ss_pred eeccccCcchHHhHh----cCCCCCCCC
Q 016307 104 KCTPCSHVYCKACIS----RFKDCPLCG 127 (392)
Q Consensus 104 ~~~~C~h~fC~~Ci~----~~~~CP~C~ 127 (392)
....|++.||..|=. ....||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 344688999999932 235699873
No 317
>PF03491 5HT_transporter: Serotonin (5-HT) neurotransmitter transporter, N-terminus; InterPro: IPR013086 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters []. The serotonin (5-HT) neurotransmitter transporter is known to be expressed in the brain and also in the periphery: on platelet, placental and pulmonary cell membranes. The brain 5-HT transporter is thought to be the principal site of action of therapeutic anti-depressants (which inhibit this transporter), and it may also mediate the behavioural effects of cocaine and amphetamines []. The human form (630 amino acids) is 92% identical to the rat brain 5-HT transporter, and shares the same predicted topology and conserved sites for post-translational modification. This domain is found at the N-terminal region of some 5-HT neurotransmitters.; GO: 0005335 serotonin:sodium symporter activity, 0006836 neurotransmitter transport, 0005887 integral to plasma membrane
Probab=43.34 E-value=29 Score=22.42 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 016307 9 KARPDDASPRKPGENSNKYPAE 30 (392)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (392)
|--|+..+.--+|.+||+|.++
T Consensus 7 Kg~p~~gdk~E~gqISNGYSaV 28 (42)
T PF03491_consen 7 KGVPTPGDKAESGQISNGYSAV 28 (42)
T ss_pred cccCCCCCccccceeccCcccc
Confidence 3345555667788999998765
No 318
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.70 E-value=15 Score=31.87 Aligned_cols=41 Identities=24% Similarity=0.709 Sum_probs=28.6
Q ss_pred eccccccccccCce-------eccccCcchHHhHhcCC---------------CCCCCCccccc
Q 016307 91 SCMICQALLFECSK-------CTPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~~p~-------~~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
-|.||..+-- +-. ...|+..|=.-|+-.|. +||.|..++..
T Consensus 167 ~cgicyayql-dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 167 ACGICYAYQL-DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccceeeeec-CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4777776533 211 23699999999998882 39999988764
No 319
>PRK10941 hypothetical protein; Provisional
Probab=42.59 E-value=2.8e+02 Score=26.07 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
-...|...++++..+....++++.|+...+..+.+ .++..... ---|.++.++|.++.|+.-|+..
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-------~P~dp~e~-------RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQF-------DPEDPYEI-------RDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-------CCCCHHHH-------HHHHHHHHHcCCcHHHHHHHHHH
Confidence 36678888889999988888888888777776653 34433222 33578899999999999777665
Q ss_pred HHHHHHhhcCCchHHHHHHHH
Q 016307 351 IKRLESLTLKPEEAGLEQRVR 371 (392)
Q Consensus 351 l~~le~l~~~~~~~~l~~~l~ 371 (392)
++.. ..+|+...+...+.
T Consensus 242 l~~~---P~dp~a~~ik~ql~ 259 (269)
T PRK10941 242 VEQC---PEDPISEMIRAQIH 259 (269)
T ss_pred HHhC---CCchhHHHHHHHHH
Confidence 5443 55555444444333
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.34 E-value=2.6e+02 Score=26.65 Aligned_cols=58 Identities=12% Similarity=0.254 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 290 g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+.++|++.|++.|++ +.+..+|-|. +|..+-.+...++++++-.+.|.|.+..+.+.
T Consensus 41 ~~p~~Al~sF~kVlel-------EgEKgeWGFK---ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLEL-------EGEKGEWGFK---ALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCHHHHHHHHHHHHhc-------ccccchhHHH---HHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3778888888887765 3444445554 46677788899999999999999999999887
No 321
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.28 E-value=65 Score=30.95 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 327 LAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+.+.|=+...-|++++|++.|++++
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHH
Confidence 3334433333344444444444443
No 322
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=42.08 E-value=1.4e+02 Score=32.09 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=40.2
Q ss_pred HcCCHHHHHHHHHHHHHHHH--------------------HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016307 288 YGGDLQAARSYYVRSLNVRR--------------------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~--------------------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
..++++++...|+.++++.- .+++.....+....+-+.+.+|++..|..+|+..+|...+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 34778888888888776411 1111111112222355677788888888888888777777
Q ss_pred HHHHHH
Q 016307 348 QEAIKR 353 (392)
Q Consensus 348 ~eal~~ 353 (392)
+||++.
T Consensus 577 ~EAlKc 582 (777)
T KOG1128|consen 577 KEALKC 582 (777)
T ss_pred HHHhhc
Confidence 777653
No 323
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.02 E-value=6e+02 Score=29.29 Aligned_cols=17 Identities=18% Similarity=-0.119 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcccccc
Q 016307 369 RVRFLFQLLVVSSLDYE 385 (392)
Q Consensus 369 ~l~~~~~~l~~~~~~~~ 385 (392)
|...++...+..+..|.
T Consensus 1334 R~e~l~~k~k~~f~~~~ 1350 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGGLA 1350 (1758)
T ss_pred HHHHHHHHhhhcccccc
Confidence 34445555554444443
No 324
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.58 E-value=88 Score=29.25 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHH
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQR 369 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~ 369 (392)
-.-|.-...+|++++|...|.+|+.++++| ...|.+..+++.
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eL 225 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLEL 225 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 344555566799999999999999999999 666777666554
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.47 E-value=1.8e+02 Score=27.13 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
+...+-+++.....++..|...|.++-+.....
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~ 67 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKA 67 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 344555666666667777777777776655443
No 326
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=41.14 E-value=2.3e+02 Score=31.34 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhh-----cCCCCCcch--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 284 DLKYYGGDLQAARSYYVRSLNVRRDAVK-----RHSNVPSQV--LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~~e~sl~~~~~~~~-----~~~~~~~~~--~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
+|..-..++.+|...|-+.|...-..-. ....+...+ -||-.-+..+-.+.+. |+-++|.+.+++...+|++
T Consensus 524 EI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~-G~~~~A~qlL~qlq~mmen 602 (851)
T TIGR02302 524 EIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARS-GDRDQAKQLLSQLQQMMNN 602 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 4444456677888888887774332110 011111111 2455455555555554 9999999999999999999
Q ss_pred h
Q 016307 357 L 357 (392)
Q Consensus 357 l 357 (392)
+
T Consensus 603 l 603 (851)
T TIGR02302 603 L 603 (851)
T ss_pred H
Confidence 9
No 327
>PRK15331 chaperone protein SicA; Provisional
Probab=40.84 E-value=1.8e+02 Score=25.26 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=68.6
Q ss_pred hhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016307 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 242 ~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~ 321 (392)
+..|+..+|..+|.- +..++.-..+ -.--|+.....++++++|+..|.-+..+.. .++.
T Consensus 48 y~~Gk~~eA~~~F~~----L~~~d~~n~~-------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----~dp~------ 106 (165)
T PRK15331 48 YNQGRLDEAETFFRF----LCIYDFYNPD-------YTMGLAAVCQLKKQFQKACDLYAVAFTLLK----NDYR------ 106 (165)
T ss_pred HHCCCHHHHHHHHHH----HHHhCcCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccc----CCCC------
Confidence 356777777666642 2223322222 245677788778888899998888775422 1111
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
..=..|..+..+|+...|...|+.++. .|.++.+.++-...+..|...
T Consensus 107 ----p~f~agqC~l~l~~~~~A~~~f~~a~~-------~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 107 ----PVFFTGQCQLLMRKAAKARQCFELVNE-------RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred ----ccchHHHHHHHhCCHHHHHHHHHHHHh-------CcchHHHHHHHHHHHHHHHcc
Confidence 123457778889999999988887776 567777777766666665544
No 328
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=40.36 E-value=16 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.815 Sum_probs=15.8
Q ss_pred cCcchHHhHhcC-------------CCCCCCCc
Q 016307 109 SHVYCKACISRF-------------KDCPLCGA 128 (392)
Q Consensus 109 ~h~fC~~Ci~~~-------------~~CP~C~~ 128 (392)
.-.||..||... |.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999997543 56999986
No 329
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.25 E-value=4.2e+02 Score=28.58 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHh---hcCCchHHHHHHHHH
Q 016307 337 IGNEDVAVDGFQEAIKRLESL---TLKPEEAGLEQRVRF 372 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l---~~~~~~~~l~~~l~~ 372 (392)
.++|.+|+..++..++.++.. ..-+..+.|.+.+..
T Consensus 145 kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~ 183 (793)
T KOG2180|consen 145 KRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDK 183 (793)
T ss_pred hccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 488888888888888888765 333344444444433
No 330
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=39.79 E-value=2.9e+02 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
.|...+..+...++++.|++..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444555555555544443333
No 331
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=39.26 E-value=2.7e+02 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=17.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.....|+|++|++++.-+..+..+.
T Consensus 114 ~~ci~~g~y~eALel~~~~~~L~~~~ 139 (338)
T PF04124_consen 114 DTCIRNGNYSEALELSAHVRRLQSRF 139 (338)
T ss_pred HHHHhcccHhhHHHHHHHHHHHHHhc
Confidence 34555689999998777665544443
No 332
>PLN03218 maturation of RBCL 1; Provisional
Probab=38.97 E-value=3e+02 Score=31.43 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+++.|...+...|+.++|++.|+++.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356667777777788777777777654
No 333
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=38.91 E-value=56 Score=22.72 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 337 IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.|++++|+..|++++ ...|.+..+.-.++.++...+.+
T Consensus 4 ~~~~~~A~~~~~~~l------~~~p~~~~~~~~la~~~~~~g~~ 41 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL------QRNPDNPEARLLLAQCYLKQGQY 41 (68)
T ss_dssp TTHHHHHHHHHHHHH------HHTTTSHHHHHHHHHHHHHTT-H
T ss_pred ccCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCH
Confidence 466666665555554 55778888888888777666543
No 334
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.56 E-value=66 Score=32.70 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.-++..+++.-.++.++-+- ++|-+++.++....- |+.--+.-.+.+|...|+++.-+++++-|+.+.++.
T Consensus 300 e~~~~~elE~lv~D~d~~Rm---qaLiirerILgpsh~------d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~ 370 (615)
T KOG0508|consen 300 EVNNREELEELVEDPDEMRM---QALIIRERILGPSHP------DVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKN 370 (615)
T ss_pred hcCCHHHHHHHhcChHHHHH---HHHHHHHHHhCCCCC------CceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhh
Confidence 33455555555555555443 666677777764433 222233445788999999999999999999999986
Q ss_pred --hcCCchHHHHHHHHHHHHHHHhccccccCCCC
Q 016307 358 --TLKPEEAGLEQRVRFLFQLLVVSSLDYENLDP 389 (392)
Q Consensus 358 --~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~ 389 (392)
...|-.+..+..+..+..++-.....-+++.+
T Consensus 371 l~PlspmT~ssllsFaelFS~mL~d~~~~g~~~~ 404 (615)
T KOG0508|consen 371 LEPLSPMTASSLLSFAELFSFMLQDFAAKGSLGT 404 (615)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhhhhhhcCCCCC
Confidence 67788888888888887777666554444443
No 335
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=38.44 E-value=15 Score=24.79 Aligned_cols=30 Identities=30% Similarity=0.846 Sum_probs=19.0
Q ss_pred Cceecccc-CcchHHhHhcCC----CCCCCCcccc
Q 016307 102 CSKCTPCS-HVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 102 ~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+.-.+.|. |-.|..|+.... .||.|..++.
T Consensus 12 ~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 12 NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp -SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 44566786 778999998763 3999988654
No 336
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=10 Score=35.66 Aligned_cols=25 Identities=24% Similarity=0.971 Sum_probs=18.7
Q ss_pred ccCcchHHhHhcCC-----------------CCCCCCccccc
Q 016307 108 CSHVYCKACISRFK-----------------DCPLCGADIEK 132 (392)
Q Consensus 108 C~h~fC~~Ci~~~~-----------------~CP~C~~~~~~ 132 (392)
|....|.+|+.+|+ .||.||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44567899998883 29999987643
No 337
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.00 E-value=20 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.927 Sum_probs=17.9
Q ss_pred CcchHHhHhcC--CCCCCCCcccc
Q 016307 110 HVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 110 h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
.+||..|.... ..||.|+..+.
T Consensus 29 CTFC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHhcCcCcCCCCccc
Confidence 37999999887 56999987654
No 338
>PRK05685 fliS flagellar protein FliS; Validated
Probab=37.78 E-value=2.3e+02 Score=23.38 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHhc
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~~ 380 (392)
+......|+++++-.....+..|+..| ..+.+. ..+-.++.++|.++...
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~ 94 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRR 94 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHH
Confidence 333444588888888888888888888 555443 35667777777776543
No 339
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.15 E-value=25 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.772 Sum_probs=18.8
Q ss_pred cCcchHHhHhcC--CCCCCCCccccc
Q 016307 109 SHVYCKACISRF--KDCPLCGADIEK 132 (392)
Q Consensus 109 ~h~fC~~Ci~~~--~~CP~C~~~~~~ 132 (392)
.++||..|.+.. ..||.|...+..
T Consensus 28 EcTFCadCae~~l~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLHGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhcCcCCCCCchhhc
Confidence 368999999854 359999987655
No 340
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.13 E-value=2.9e+02 Score=25.36 Aligned_cols=11 Identities=18% Similarity=0.048 Sum_probs=4.2
Q ss_pred HHHHHhhhccH
Q 016307 200 ESAKSRLSLCT 210 (392)
Q Consensus 200 ~~A~~~~~~c~ 210 (392)
..+...++.|+
T Consensus 59 g~~l~~Ls~~E 69 (230)
T cd07625 59 GQKLIQLSVEE 69 (230)
T ss_pred HHHHHHHhhhc
Confidence 33333334343
No 341
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=36.50 E-value=2.1e+02 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
.......|.+...+|++.+|.+.|-.++.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 33445556666666667777776666654
No 342
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.41 E-value=38 Score=27.35 Aligned_cols=37 Identities=30% Similarity=0.711 Sum_probs=25.1
Q ss_pred eccccccccccCce-------------eccccCcchHHhHhc----CCCCCCCC
Q 016307 91 SCMICQALLFECSK-------------CTPCSHVYCKACISR----FKDCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~~~p~-------------~~~C~h~fC~~Ci~~----~~~CP~C~ 127 (392)
.|--|+..|.+.+. ...|.+.||..|=.- ...||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 37888877663322 667899999988322 24699885
No 343
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.15 E-value=1.8e+02 Score=21.62 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
....|++++|+..|.++++.....+...++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 345689999999999999988877766554
No 344
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=36.13 E-value=2.3e+02 Score=22.87 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHhc
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~~ 380 (392)
......|+++.+...+..+..|+..| ..+++. ..+-.++..+|.++...
T Consensus 37 ~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~ 88 (122)
T PF02561_consen 37 KEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQ 88 (122)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 33445688888888888888888888 555543 45667777777776543
No 345
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.01 E-value=1.8e+02 Score=27.25 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=50.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 016307 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 367 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~ 367 (392)
..|++..|...|..-++ .-+... -..++.=|||..+..+|+++.|...|..+.+ ....+|.-...+
T Consensus 153 ksgdy~~A~~~F~~fi~-------~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdal 218 (262)
T COG1729 153 KSGDYAEAEQAFQAFIK-------KYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDAL 218 (262)
T ss_pred HcCCHHHHHHHHHHHHH-------cCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHH
Confidence 34667777776665443 333322 3466788999999999999999988877665 335555555555
Q ss_pred HHHHHHHHHHH
Q 016307 368 QRVRFLFQLLV 378 (392)
Q Consensus 368 ~~l~~~~~~l~ 378 (392)
-.++.++..|+
T Consensus 219 lKlg~~~~~l~ 229 (262)
T COG1729 219 LKLGVSLGRLG 229 (262)
T ss_pred HHHHHHHHHhc
Confidence 55665555544
No 346
>PF12854 PPR_1: PPR repeat
Probab=35.91 E-value=85 Score=19.07 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
..+++-|-..+-..|+.++|.+.|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 346788888899999999999998764
No 347
>PF13041 PPR_2: PPR repeat family
Probab=35.26 E-value=91 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+.+.+-..+...|+.++|.+.|++..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777788888899999998888766
No 348
>PRK10869 recombination and repair protein; Provisional
Probab=34.82 E-value=5.5e+02 Score=26.89 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 016307 366 LEQRVRFLFQLLVVSS 381 (392)
Q Consensus 366 l~~~l~~~~~~l~~~~ 381 (392)
+++|+..+...-+.|.
T Consensus 301 ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 301 LEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4444444444444444
No 349
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=34.80 E-value=35 Score=29.31 Aligned_cols=43 Identities=21% Similarity=0.494 Sum_probs=29.3
Q ss_pred CceeccccccccccCceeccccC--c---chHHhHhcC------CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSH--V---YCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h--~---fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
..-.|.||.+--. +...||.- + -=.+|+.+| ..|+.|+.++..
T Consensus 7 ~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4557999998733 34457643 1 147899998 349999987654
No 350
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.40 E-value=4.6e+02 Score=26.44 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~ 301 (392)
+..|....++|...+.....+++.+...++
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~ 73 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLET 73 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333333
No 351
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=34.30 E-value=4.1e+02 Score=26.01 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=11.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcC
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGG 290 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g 290 (392)
...+....+...+..|..++...+
T Consensus 38 ~~~e~~~~~~~Ll~~lE~~K~~~~ 61 (380)
T PF04652_consen 38 RSKECRQFLTSLLDKLEKMKAELG 61 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCT-
T ss_pred CChhHHHHHHHHHHHHHHhhhccC
Confidence 334445555555555555555544
No 352
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.21 E-value=24 Score=24.21 Aligned_cols=30 Identities=30% Similarity=0.778 Sum_probs=19.9
Q ss_pred ecccccccc---ccCceeccccCcchHHhHhcC
Q 016307 91 SCMICQALL---FECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 91 ~C~iC~~~~---~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
.|.+|...| ........||+.||..|....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 467775433 224556689999999997543
No 353
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=34.04 E-value=20 Score=35.22 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=24.5
Q ss_pred eecccccccccc-CceeccccCcchHHhHhcC
Q 016307 90 LSCMICQALLFE-CSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 l~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~ 120 (392)
..||||+-++.. --.+..|..+.|..|+.++
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecc
Confidence 579999998663 2355678999999999776
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.00 E-value=3e+02 Score=26.93 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH--HHHHHHhccccccCC
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRF--LFQLLVVSSLDYENL 387 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~--~~~~l~~~~~~~~~~ 387 (392)
..|+-.-+.+|++.+|++++....+..--+..-.....+++.+.. .|...++-...|+.|
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 467888888999999988877655443222111122223333222 355556666666654
No 355
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.94 E-value=2.1e+02 Score=32.82 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
++.-.....+....|...+.+++.+..-....... ..+.+.++++.++..++.++.|+.+++.|+++-+++
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP------~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP------PTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCC------chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444556667777777777765544444222 457777899999999999999999999999988777
No 356
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.37 E-value=3.3e+02 Score=24.94 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 292 l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+.|...|++++++.+..+... .-.-|...||.-...|+.+|+.++|++.-++++..-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-----~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-----HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-----SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-----CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4678888999998877643211 123455556666678899999999998877776554
No 357
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=33.35 E-value=6.4e+02 Score=27.09 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVAD-VDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~-~~~~~g~~~~A~~~~~ea 350 (392)
+..+.....+++.+...+.+.+..+..+++.++. +.+. ...++..-+..|-++|. -....|+.+.|+..++.+
T Consensus 377 ~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~----l~~~--r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~A 450 (656)
T PRK06975 377 QASVHQLDSQFAQLDGKLADAQSAQQALEQQYQD----LSRN--RDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNA 450 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcC--hhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444445555555554444444444444444432 1222 24566655666666663 333459999999999999
Q ss_pred HHHHHHh
Q 016307 351 IKRLESL 357 (392)
Q Consensus 351 l~~le~l 357 (392)
..+|..+
T Consensus 451 D~~La~~ 457 (656)
T PRK06975 451 DARLATS 457 (656)
T ss_pred HHHHHhc
Confidence 9999875
No 358
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=33.11 E-value=3.5e+02 Score=27.07 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
..+....+.....++++.|+...+++++ -.+. --.++..|+.+|..+|+++.|+-.++
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~-------lsP~-------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVE-------LSPS-------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCch-------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 3444445555556666655555555543 3343 24567889999999999998885443
No 359
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=32.74 E-value=3.1e+02 Score=24.58 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~-g~l~~A~~~~e~sl~~~~ 307 (392)
.+..+..++..+..+-... |+|+..-..+....+..+
T Consensus 40 aqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~ 77 (201)
T PF11172_consen 40 AQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSE 77 (201)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Confidence 3445555666666555443 466665555554444333
No 360
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.61 E-value=3.7e+02 Score=24.64 Aligned_cols=76 Identities=12% Similarity=-0.020 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 016307 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL-AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVR 371 (392)
Q Consensus 293 ~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl-~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~ 371 (392)
..+++.++++++..+.... .-++..+ -.+|..+...|++++|+.+|+.+...+.+=.=..-...++..+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3555566666665443322 1123333 37899999999999999999999777664311122334444444
Q ss_pred HHHHHH
Q 016307 372 FLFQLL 377 (392)
Q Consensus 372 ~~~~~l 377 (392)
.....+
T Consensus 226 ~Ca~~~ 231 (247)
T PF11817_consen 226 ECAKRL 231 (247)
T ss_pred HHHHHh
Confidence 443333
No 361
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.05 E-value=1.4e+02 Score=31.53 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHH--------------------HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVA--------------------DVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 298 ~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la--------------------~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.|...|...+.++.+.+++.+.+.-..-.|+.|| ..|-.+|-+...-..|.++++-.++.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3445666666666666665554433333333322 12333455555555566666666665
Q ss_pred -hcCCchHHHHHHHHHH
Q 016307 358 -TLKPEEAGLEQRVRFL 373 (392)
Q Consensus 358 -~~~~~~~~l~~~l~~~ 373 (392)
..+|+|..++.-+.-+
T Consensus 102 l~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLL 118 (700)
T ss_pred HhcCCCcHHHHHHHHHH
Confidence 6667777766654443
No 362
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.47 E-value=4.6e+02 Score=24.85 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=13.1
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHH
Q 016307 264 LPMDDLEIIHTLSVSLNKIGDLKY 287 (392)
Q Consensus 264 L~~~~~e~~~~i~~~~~~l~~l~~ 287 (392)
|..++.+....+.+.+.+|.+|+.
T Consensus 73 LkakLkes~~~l~dRetEI~eLks 96 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKS 96 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444455555666666666663
No 363
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.38 E-value=3e+02 Score=22.79 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
--|......+|++++++..-..+|.....-.+-+.+. ---++..+-+-+...+.+|+.++|+..|+.+-+++.+-
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde---GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE---GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc---chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 3444445556777788887777777544332222211 01223333445677788999999999999999998765
No 364
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.36 E-value=7.4e+02 Score=28.60 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHhccccc
Q 016307 363 EAGLEQRVRFLFQLLVVSSLDY 384 (392)
Q Consensus 363 ~~~l~~~l~~~~~~l~~~~~~~ 384 (392)
.+.|..++.++++.++....-|
T Consensus 1733 L~~Le~r~~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1733 LAGLEKRVESVLDHINERVLYY 1754 (1758)
T ss_pred hhhHHHHHHHHHHHHhhhhhhh
Confidence 3445556666777666554444
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.30 E-value=2.8e+02 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHHH-----HHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 291 DLQAARSYYVRSLNVR-----RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~~e~sl~~~-----~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.++++...|..++... ...+.+.+- .+.+|-.++.+...+|+.+.|.++.++|+=.+++.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~Py-------HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~ 73 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPY-------HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA 73 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4556666777766632 233344443 35678889999999999999999999999999975
No 366
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=31.22 E-value=96 Score=24.89 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCc
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~ 362 (392)
+..+..+-..|.++...|+.+.|--+|-....+++.+..||+
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~Hpd 76 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCCSCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 355666677789999999999999999999999977777775
No 367
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=31.12 E-value=16 Score=26.38 Aligned_cols=10 Identities=30% Similarity=1.281 Sum_probs=6.3
Q ss_pred cchHHhHhcC
Q 016307 111 VYCKACISRF 120 (392)
Q Consensus 111 ~fC~~Ci~~~ 120 (392)
-||+.|+.+|
T Consensus 11 gFCRNCLskW 20 (68)
T PF06844_consen 11 GFCRNCLSKW 20 (68)
T ss_dssp S--HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4888888877
No 368
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=31.00 E-value=41 Score=38.87 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=30.4
Q ss_pred ceeccccccc-cc-cCceeccccCcchHHhHhc-----C---------CCCCCCCccccc
Q 016307 89 PLSCMICQAL-LF-ECSKCTPCSHVYCKACISR-----F---------KDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~-~~-~~p~~~~C~h~fC~~Ci~~-----~---------~~CP~C~~~~~~ 132 (392)
+-.|.||+-. |- -+...+.|+|.|-..|..+ | ..||.|..++.-
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4569999853 12 1457789999997777543 3 149999987764
No 369
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=30.85 E-value=1.1e+03 Score=28.96 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=65.2
Q ss_pred hhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKI-----------GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 248 h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l-----------~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
+.+..+.........++.+-. ..|..++++- ..+.....+++.+=+.++++++.++..++.....
T Consensus 1513 ~~~q~l~KK~q~Lq~EI~~H~----prI~~vl~~gq~Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~ka 1588 (2473)
T KOG0517|consen 1513 QTVQSLHKKNQTLQAEIKGHQ----PRINDVLERGQSLIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKA 1588 (2473)
T ss_pred HHHHHHHHHhHHHHHHHHhcc----hHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555433 3333333332 2333334555566666666666666555544443
Q ss_pred CcchhHHHHHHHHHHHH--HH-----------------hcCCHHHHHHHHHHHHHHHHHh------hcCCchHHHHHH--
Q 016307 317 PSQVLDVAVSLAKVADV--DR-----------------SIGNEDVAVDGFQEAIKRLESL------TLKPEEAGLEQR-- 369 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~--~~-----------------~~g~~~~A~~~~~eal~~le~l------~~~~~~~~l~~~-- 369 (392)
-...||.+..=+|++.- +. .-..++.+++.|.+.+..|... ..+|+...+..+
T Consensus 1589 QQY~fDaaE~EaWm~Eqel~m~see~gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~ 1668 (2473)
T KOG0517|consen 1589 QQYYFDAAEAEAWMGEQELYMMSEEYGKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQS 1668 (2473)
T ss_pred HHHHhhHHHHHHHHhhhHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34456777777777631 11 1123445555666666555443 566776665533
Q ss_pred -HHHHHHHHH
Q 016307 370 -VRFLFQLLV 378 (392)
Q Consensus 370 -l~~~~~~l~ 378 (392)
+..+|..|+
T Consensus 1669 qldkly~~Lk 1678 (2473)
T KOG0517|consen 1669 QLDKLYAGLK 1678 (2473)
T ss_pred HHHHHHHHHH
Confidence 334444443
No 370
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=41 Score=31.09 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=32.2
Q ss_pred Cceecccccccccc---CceeccccCcchHHhHhcCC--CCCCCCccccc
Q 016307 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~ 132 (392)
-.+.|||=.-.+.. =-+..+|||+|-..-+.+.. .|++|.+.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 35778875443321 23566899999998888774 59999998765
No 371
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=24 Score=37.22 Aligned_cols=38 Identities=29% Similarity=0.726 Sum_probs=29.7
Q ss_pred eecccccccccc----CceeccccCcchHHhHhcCCC-CCCCCc
Q 016307 90 LSCMICQALLFE----CSKCTPCSHVYCKACISRFKD-CPLCGA 128 (392)
Q Consensus 90 l~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~~~-CP~C~~ 128 (392)
-.|.+|+.. .+ =+.++.|+..||+.|...... ||.|.-
T Consensus 655 r~C~vcq~p-edse~~v~rt~~C~~~~C~~c~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLP-EDSETDVCRTTFCYTPYCVACSLDYASISEVCGP 697 (717)
T ss_pred HHHHHhcCC-cCccccccCccccCCcchHhhhhhhhccCcccCc
Confidence 358899876 42 256778999999999988755 999974
No 372
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=30.47 E-value=3.5e+02 Score=26.86 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=4.3
Q ss_pred hccccccCC
Q 016307 379 VSSLDYENL 387 (392)
Q Consensus 379 ~~~~~~~~~ 387 (392)
..+.+|..+
T Consensus 148 ~~F~~yksi 156 (383)
T PF04100_consen 148 EHFKPYKSI 156 (383)
T ss_pred HHHHcccCc
Confidence 444455443
No 373
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.13 E-value=14 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.637 Sum_probs=16.1
Q ss_pred eccc--cccccccC-------ceeccccCcchHHhHhcC
Q 016307 91 SCMI--CQALLFEC-------SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 91 ~C~i--C~~~~~~~-------p~~~~C~h~fC~~Ci~~~ 120 (392)
.||- |...+... .....|++.||..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5655 66654432 123349999999998776
No 375
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.08 E-value=4.8e+02 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.4
Q ss_pred HHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhc
Q 016307 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIER 219 (392)
Q Consensus 186 l~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~ 219 (392)
.+..++.++..++++++...+..+...+...+..
T Consensus 32 ~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~ 65 (352)
T PF02259_consen 32 SFYRALLALRQGDYDEAKKYIEKARQLLLDELSA 65 (352)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888999999999888777776665543
No 376
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.07 E-value=2.5e+02 Score=30.64 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 330 VADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+........+.+.|...++++++.+..+
T Consensus 402 if~~e~~~~dhe~~kneL~~a~ekld~m 429 (1265)
T KOG0976|consen 402 IFRLEQGKKDHEAAKNELQEALEKLDLM 429 (1265)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3334444456666667777777777666
No 377
>PF15449 Retinal: Retinal protein
Probab=30.05 E-value=3.3e+02 Score=30.84 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHhccccccCCCCCCC
Q 016307 338 GNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVVSSLDYENLDPTLF 392 (392)
Q Consensus 338 g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~ 392 (392)
.-++.+..||.-+-.+|++- .....+..|+..| ..+..+-..-.+.+--+..||
T Consensus 297 ~~Le~s~~y~~s~a~~L~~kl~~kr~~de~llr~l-~~le~~a~g~~~p~~~~~~L~ 352 (1287)
T PF15449_consen 297 SALEGSSSYLQSAASHLEEKLSAKRGVDERLLRAL-GQLESLASGHGDPGVQDLPLC 352 (1287)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHhccCCCCCCCCCccc
Confidence 44667778888888887765 3333344444333 334444444556666566654
No 378
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=29.95 E-value=3.2e+02 Score=27.91 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-h
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-T 358 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~ 358 (392)
.-.++|....+...+|.+.|++++.. .+.. ...--++|.++...|+.++|+ .++... .
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l-------~P~~-------~~l~~~~a~all~~g~~~eai-------~~L~~~~~ 402 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL-------DPNS-------PLLQLNLAQALLKGGKPQEAI-------RILNRYLF 402 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc-------CCCc-------cHHHHHHHHHHHhcCChHHHH-------HHHHHHhh
Confidence 33455665666666666666666543 3321 112236678888888887554 445444 6
Q ss_pred cCCchHHHHHHHHHHHHHHHhcc
Q 016307 359 LKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 359 ~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
.+|++...-+.++..|..+++..
T Consensus 403 ~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 403 NDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred cCCCCchHHHHHHHHHHHhCchH
Confidence 77788888888887777776543
No 379
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.79 E-value=72 Score=31.95 Aligned_cols=93 Identities=18% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL---DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~---dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
++.--|.+.++..+.+.++..|+++|++-.+- ..+...+ +......+-|.-....|++..|.+.|.+++.|-
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh-----~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDH-----QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhh-----hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 33344667788899999999999999752211 1111111 111122223444445699999999999888765
Q ss_pred HHhhcCCchHHHHHHHHHHHHHH
Q 016307 355 ESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 355 e~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.. ..-.++.+.-+++.+...|
T Consensus 280 P~--n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 280 PS--NKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred cc--ccchhHHHHHHhHhhhccc
Confidence 43 2223444555555554443
No 380
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.56 E-value=48 Score=20.28 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=7.9
Q ss_pred cCCCCCCCCcc
Q 016307 119 RFKDCPLCGAD 129 (392)
Q Consensus 119 ~~~~CP~C~~~ 129 (392)
.-|.||.|+..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44679999864
No 381
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=29.12 E-value=36 Score=26.39 Aligned_cols=36 Identities=28% Similarity=0.707 Sum_probs=28.8
Q ss_pred eeccccccccccCceeccccCcchHHhHhcCCCCCCCCcccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 131 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~CP~C~~~~~ 131 (392)
-.|-||...+. . =+|.||..|--....|..|++.+.
T Consensus 45 ~~C~~CK~~v~-q-----~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVH-Q-----PGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccc-c-----CCCccChhhhcccCcccccCCeec
Confidence 45999988766 3 377899999877788999998763
No 382
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=28.92 E-value=99 Score=17.38 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+++.+-..+...|+.++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 345666778888999999988887653
No 383
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.64 E-value=4.9e+02 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 016307 339 NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 339 ~~~~A~~~~~eal~~le~l 357 (392)
+...|...|++|...+++.
T Consensus 571 ~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 571 NIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5556666677766666644
No 384
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.11 E-value=5.1e+02 Score=24.36 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.++-|.+....+.+...+..+.++..+|+.+..+..+
T Consensus 67 lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 67 LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444
No 385
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=27.97 E-value=2.7e+02 Score=23.53 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+-..|.+|..+-. .++...|.+.|+++..-+...
T Consensus 104 Lf~~L~~LD~AA~-~kd~~~a~k~Y~~av~~~daf 137 (142)
T TIGR03042 104 LKDDLEKLDEAAR-LQDGPQAQKAYQKAAADFDAY 137 (142)
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 488888889998888877654
No 386
>PHA02862 5L protein; Provisional
Probab=27.70 E-value=40 Score=28.50 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=27.8
Q ss_pred eccccccccccCceeccccC-----cchHHhHhcCC------CCCCCCccccc
Q 016307 91 SCMICQALLFECSKCTPCSH-----VYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
.|.||++-- +...-||.. --=..|+.+|. .||+|+.++..
T Consensus 4 iCWIC~~~~--~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVC--DERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcC--CCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 599999973 333467653 12478998883 49999987764
No 387
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=27.43 E-value=3.8e+02 Score=22.64 Aligned_cols=76 Identities=11% Similarity=-0.028 Sum_probs=44.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCch
Q 016307 284 DLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 363 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~ 363 (392)
.-....|.+.+|+..|+.. ..+.+-.. .. ...-=+|+.++-..+++.+|+..+++.+++- ..||..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L-------~~ryP~g~--ya--~qAqL~l~yayy~~~~y~~A~a~~~rFirLh---P~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEAL-------DTRYPFGE--YA--EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH---PTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHH-------HhcCCCCc--cc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCCCc
Confidence 3334456677776655543 33333221 00 1223477889999999999997666554332 777776
Q ss_pred HHHHHHHHHH
Q 016307 364 AGLEQRVRFL 373 (392)
Q Consensus 364 ~~l~~~l~~~ 373 (392)
...+..+|-.
T Consensus 84 dYa~Y~~gL~ 93 (142)
T PF13512_consen 84 DYAYYMRGLS 93 (142)
T ss_pred cHHHHHHHHH
Confidence 6666665533
No 388
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=27.38 E-value=29 Score=31.51 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=14.2
Q ss_pred ccCceeccccccccccCceec
Q 016307 86 KIGPLSCMICQALLFECSKCT 106 (392)
Q Consensus 86 ~~~~l~C~iC~~~~~~~p~~~ 106 (392)
..--+.|++|+.+|. +|+..
T Consensus 257 v~~GfvCsVCLsvfc-~p~~~ 276 (296)
T COG5242 257 VLLGFVCSVCLSVFC-RPVPV 276 (296)
T ss_pred EEEeeehhhhheeec-CCcCc
Confidence 334578999999987 66544
No 389
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=27.27 E-value=40 Score=22.12 Aligned_cols=35 Identities=23% Similarity=0.871 Sum_probs=14.9
Q ss_pred ccccccccccCceec--cccCcchHHhHhcCC------CCCCC
Q 016307 92 CMICQALLFECSKCT--PCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|.+|.++.....+.. .|+-.+=..|+..++ .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766334444 365444456665553 38876
No 390
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=65 Score=34.42 Aligned_cols=44 Identities=30% Similarity=0.804 Sum_probs=30.1
Q ss_pred ceeccccccccccC---------ceeccccCcc--------------------hHHhHhcCC------------CCCCCC
Q 016307 89 PLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLCG 127 (392)
Q Consensus 89 ~l~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C~ 127 (392)
.-.|.-|+..++++ ..++.||..| |..|..++. .||.|+
T Consensus 101 ~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~CG 180 (750)
T COG0068 101 AATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKCG 180 (750)
T ss_pred hhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcccC
Confidence 34688887766632 2355677777 999988763 299998
Q ss_pred ccccc
Q 016307 128 ADIEK 132 (392)
Q Consensus 128 ~~~~~ 132 (392)
-.+..
T Consensus 181 P~~~l 185 (750)
T COG0068 181 PHLFL 185 (750)
T ss_pred CCeEE
Confidence 65554
No 391
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.00 E-value=30 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=16.0
Q ss_pred eeccccccccccCceeccc--cCcc
Q 016307 90 LSCMICQALLFECSKCTPC--SHVY 112 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C--~h~f 112 (392)
|.||+|...|......+-| +|+|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 6899999988644455555 4655
No 392
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=26.96 E-value=4.2e+02 Score=24.16 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
|..+...+..+-....++..+...|..++.
T Consensus 40 Lk~~~~~~~~lv~~rkela~~~~~fs~al~ 69 (219)
T cd07621 40 IKDATAKADKMTRKHKDVADSYIKISAALT 69 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444344444445555555544
No 393
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.72 E-value=63 Score=36.86 Aligned_cols=58 Identities=19% Similarity=0.624 Sum_probs=39.1
Q ss_pred CceeccccccccccCceeccccCc-----chHHhHhcC-------CCCCCCCccccc-----chhhHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHV-----YCKACISRF-------KDCPLCGADIEK-----IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~-------~~CP~C~~~~~~-----~~~n~~l~~lv~~~ 146 (392)
..+.||-|-.... ..++..||.. +|..|=... ..||.|..++.. +.+...+..-.+++
T Consensus 666 ~~rkCPkCG~~t~-~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 666 GRRRCPSCGTETY-ENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEEECCCCCCccc-cccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 4688999998766 5688889865 388886543 369999987765 44444444444443
No 394
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.67 E-value=35 Score=36.60 Aligned_cols=26 Identities=12% Similarity=0.338 Sum_probs=20.8
Q ss_pred cccCcchHHhHhcCC----------CCCCCCccccc
Q 016307 107 PCSHVYCKACISRFK----------DCPLCGADIEK 132 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----------~CP~C~~~~~~ 132 (392)
.|+|.||..||..|. .|+.|..-+..
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 399999999999883 38888776654
No 395
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.25 E-value=88 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.8
Q ss_pred HHHHHHHHHhccccccCCCC
Q 016307 370 VRFLFQLLVVSSLDYENLDP 389 (392)
Q Consensus 370 l~~~~~~l~~~~~~~~~~~~ 389 (392)
+..++..|+..+-||++|+|
T Consensus 74 lleL~~~lQ~lS~df~~LqP 93 (379)
T PF11593_consen 74 LLELYNKLQELSSDFQKLQP 93 (379)
T ss_pred HHHHHHHHHHHHHHHHHhch
Confidence 66778888888888888877
No 396
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.24 E-value=7.5e+02 Score=25.65 Aligned_cols=119 Identities=9% Similarity=0.125 Sum_probs=58.4
Q ss_pred hhhhhhhhh-cCCchhhhcHHHHH--------HHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 235 GMLGDCCRA-MGDADAAVAYFADS--------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 235 ~~fC~~~~~-~h~~h~a~~~~e~~--------~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.+||.--.. +.++...+..|+.- ..+.+-+.-..+-+++.|+...+.+.++..+..++......+......
T Consensus 84 n~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~ 163 (507)
T PF05600_consen 84 NIFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKK 163 (507)
T ss_pred ceeccccchhHHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456653222 56666666666643 334444555556666667777777766665555544444433332221
Q ss_pred HHHHhhcCCCCCcchhHHHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 306 RRDAVKRHSNVPSQVLDVAVSLAKV----ADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l----a~~~~~~g~~~~A~~~~~eal~~le 355 (392)
.-+.++=...++ ..++...+..| ..+.+.+.++..|+++|......+-
T Consensus 164 ~c~~lGI~G~ni--r~ELl~l~~~LP~~~~~i~~~i~~l~~aie~Y~~f~~~~~ 215 (507)
T PF05600_consen 164 ACKQLGIKGENI--REELLELVKELPSLFDEIVEAISDLQEAIEYYQAFVEFVH 215 (507)
T ss_pred HHHHhCCccchh--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 11222222221 2333333558889999988877553
No 397
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.09 E-value=1e+02 Score=25.62 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 016307 338 GNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 338 g~~~~A~~~~~eal~~le~l 357 (392)
...++|+++++..++.++..
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~ 109 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKA 109 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776655
No 398
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=26.03 E-value=4.6e+02 Score=23.76 Aligned_cols=110 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016307 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
...+...|......+..+-....++..+...|..++.. +....... .+...|+++|+++..++... ...-.
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~----L~~~E~~~----~Ls~al~~la~~~~ki~~~~-~~qa~ 91 (224)
T cd07623 21 IENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAM----LSNCEEHT----SLSRALSQLAEVEEKIEQLH-GEQAD 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccch----hHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHh----hcCCchHHHHHHHHHHHHHHHhccccccC
Q 016307 348 QEAIKRLESL----TLKPEEAGLEQRVRFLFQLLVVSSLDYEN 386 (392)
Q Consensus 348 ~eal~~le~l----~~~~~~~~l~~~l~~~~~~l~~~~~~~~~ 386 (392)
++.+.+.+.| ..-.....++.....+|+.+++...++.+
T Consensus 92 ~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~k 134 (224)
T cd07623 92 TDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTK 134 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 399
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.79 E-value=2e+02 Score=30.71 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCchhhhcHHHH-H-------HHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 245 GDADAAVAYFAD-S-------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 245 h~~h~a~~~~e~-~-------~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
+.+|+-+.+++. + .+..+.+.++.. ....-...-..+.++..-|+++.|+..|++++.+-
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---------- 417 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---------- 417 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----------
Confidence 344777777774 1 344445555433 34455566777888888899999999999988641
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
-..+-||+...-.-|+..-...+.+.|+...+.|.
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 11223666666666666666667666666555444
No 400
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=25.72 E-value=5e+02 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=15.3
Q ss_pred hhhhhcCCchhhhcHHHHHH
Q 016307 239 DCCRAMGDADAAVAYFADSV 258 (392)
Q Consensus 239 ~~~~~~h~~h~a~~~~e~~~ 258 (392)
.-....|++|++++.|+++.
T Consensus 97 ~al~elGr~~EA~~hy~qal 116 (251)
T COG4700 97 NALAELGRYHEAVPHYQQAL 116 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHh
Confidence 33446799999999998763
No 401
>PLN03218 maturation of RBCL 1; Provisional
Probab=25.68 E-value=4.9e+02 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+++.|-..+...|+++.|.+.|.++++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666778888999998888887754
No 402
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.14 E-value=20 Score=25.05 Aligned_cols=14 Identities=21% Similarity=0.809 Sum_probs=12.3
Q ss_pred cccCcchHHhHhcC
Q 016307 107 PCSHVYCKACISRF 120 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~ 120 (392)
.|++.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998877
No 403
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.08 E-value=57 Score=22.33 Aligned_cols=11 Identities=45% Similarity=1.313 Sum_probs=5.4
Q ss_pred CCCCCCccccc
Q 016307 122 DCPLCGADIEK 132 (392)
Q Consensus 122 ~CP~C~~~~~~ 132 (392)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 49999987765
No 404
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=25.06 E-value=8e+02 Score=25.85 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhhhhhcC---CchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 016307 226 LCSQLGAVLGMLGDCCRAMG---DADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--GDLQAARSYYV 300 (392)
Q Consensus 226 ~C~~h~~~L~~fC~~~~~~h---~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~--g~l~~A~~~~e 300 (392)
.|..+-+...+.|.+-.... +..+...+.++.+-.+-..+. ...--.++-+|++|+... ..-..++..|.
T Consensus 229 ~C~r~mevaa~v~aiNpsi~~~td~~e~~~lqq~lLw~lyd~gh-----l~~YPmALg~LadLeEi~pt~~r~~~~~l~~ 303 (618)
T PF05053_consen 229 VCDRHMEVAALVSAINPSIDAHTDSVELAQLQQDLLWLLYDMGH-----LARYPMALGNLADLEEIDPTPGRPTPLELFN 303 (618)
T ss_dssp E--HHHHHHHHHHC---ECCTTEEEHHHHHHHHHHHHHHHHTTT-----TTT-HHHHHHHHHHHHHS--TTS--HHHHHH
T ss_pred eecccchHHHHHHhcCCccccccchHHHHHHHHHHHHHHHhcCc-----hhhCchhhhhhHhHHhhccCCCCCCHHHHHH
Confidence 57777777777775422221 223333333333333333332 233456788888888765 35667889999
Q ss_pred HHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 301 ~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+++...+.......- -=+--+|--+.+.+++.+|+..+.++-..++.-
T Consensus 304 ~AI~sa~~~Y~n~Hv---------YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 304 EAISSARTYYNNHHV---------YPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHHCTT--S---------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcc---------ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999887776543221 011122322333466666666666666665554
No 405
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.95 E-value=2.5e+02 Score=27.96 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 295 A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
|+..+.++++-.+.+.. .+.....+++|.++-.||.++..... +-...|++|.+++.+.
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~--eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESK--EQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchH--HHHHHHHHHHHHHHHH
Confidence 44455566664444433 22233445666666666665554222 2345699999999987
No 406
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.85 E-value=1.5e+02 Score=16.94 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 327 LAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal 351 (392)
++.+-..+...|+.++|.+.|++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556667778899999998888764
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=24.84 E-value=2e+02 Score=19.74 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
.+-.+|..+..+|++.+|..+.+..+ ..+|++...+.....+-..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL------~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL------EIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH------HHTTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH------hhCCCcHHHHHHHHHHHHH
Confidence 34567888888999888886655544 5567776665554444333
No 408
>PLN03223 Polycystin cation channel protein; Provisional
Probab=24.62 E-value=7.9e+02 Score=28.93 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC-CCCcc------hhHHHHHHHHH-HHHHHhcCCHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NVPSQ------VLDVAVSLAKV-ADVDRSIGNEDVA 343 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~-~~~~~------~~dla~sl~~l-a~~~~~~g~~~~A 343 (392)
...+..++..++.+...++.++.++.......+......+.+. ++... ..|+...-..| +.+.+.+|+.++|
T Consensus 777 ~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~~~~~~~il~kq~~a 856 (1634)
T PLN03223 777 AATLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLETLINAGFTDIKAGQAALEAKLDEILGKQQQA 856 (1634)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHhchhHHHhHHHHHHhHHHHHHHHHHHH
Confidence 4556777888888888888888888877776665444333322 22110 01333222333 2466678999999
Q ss_pred HHHHHHHHHHHHHh
Q 016307 344 VDGFQEAIKRLESL 357 (392)
Q Consensus 344 ~~~~~eal~~le~l 357 (392)
+..-++++.+++..
T Consensus 857 l~~~~~~~~~~~~~ 870 (1634)
T PLN03223 857 LAAAQESLAIQQRT 870 (1634)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 409
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.55 E-value=47 Score=31.92 Aligned_cols=40 Identities=30% Similarity=0.873 Sum_probs=26.1
Q ss_pred ceeccccccccccC--ceeccccCcchHHhHh----cCCCCCCCCc
Q 016307 89 PLSCMICQALLFEC--SKCTPCSHVYCKACIS----RFKDCPLCGA 128 (392)
Q Consensus 89 ~l~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~----~~~~CP~C~~ 128 (392)
.-.|-.|++-+... -++-.|.+.||..|=. ....||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34588886654432 3455789999999932 2356998863
No 410
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=24.45 E-value=1.9e+02 Score=25.92 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=18.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHH
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVR 371 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~ 371 (392)
+....+..++.|-..|.-++.-++.+ +.+|++...+.++.
T Consensus 99 Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr 140 (204)
T cd07661 99 DTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFR 140 (204)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHH
Confidence 44444444444444455555555433 34555544444433
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.35 E-value=5.1e+02 Score=23.13 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 016307 320 VLDVAVSLAKVADVDR--SIGNEDVAVDGFQ 348 (392)
Q Consensus 320 ~~dla~sl~~la~~~~--~~g~~~~A~~~~~ 348 (392)
+.+....+-+.+.|.. .-|.+++|.+.++
T Consensus 105 lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLk 135 (200)
T cd00280 105 LHEEIRKLIKEQAVAVCMENGEFKKAEEVLK 135 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3344444444444333 3466555554443
No 412
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=24.23 E-value=7.7e+02 Score=25.12 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE-------DVAVDGFQEAI 351 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~-------~~A~~~~~eal 351 (392)
.=+++.....+.++++|..+|.+.++...-. -+.-.--.|..+..+|+. ++|.++|.++-
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKWS-------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhccccH-------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3445555555667777766666655431110 010111234455556666 77778888877
Q ss_pred HHHHHh--hcCCchHHHHHHH
Q 016307 352 KRLESL--TLKPEEAGLEQRV 370 (392)
Q Consensus 352 ~~le~l--~~~~~~~~l~~~l 370 (392)
....+. ..-|-+..+..+.
T Consensus 375 ~l~~k~~gk~lp~E~Fv~RK~ 395 (468)
T PF10300_consen 375 KLKQKKAGKSLPLEKFVIRKA 395 (468)
T ss_pred HHHhhhccCCCChHHHHHHHH
Confidence 777765 3335555554443
No 413
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.22 E-value=5.8e+02 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 016307 269 LEIIHTLSVSLNKIGDLKYY---GGDLQAARSYYVR 301 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l~~~---~g~l~~A~~~~e~ 301 (392)
.+..+.+......+.+|... .|+.++-...+.+
T Consensus 185 ~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~ 220 (563)
T TIGR00634 185 QELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQR 220 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHH
Confidence 34444444444444444433 3555444443333
No 414
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.21 E-value=3.8e+02 Score=21.49 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=28.4
Q ss_pred hCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 263 ~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
.|.....+++..++...+.|...+..+++|.+-...++.+++..+
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~ 50 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ 50 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Confidence 444555667788888888888888888888777777666666443
No 415
>PF08910 Aida_N: Aida N-terminus; InterPro: IPR015006 This entry represents the axin interactor, dorsalization-associated protein family AIDA [].; PDB: 1UG7_A.
Probab=23.99 E-value=3.3e+02 Score=21.83 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHH
Q 016307 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD 334 (392)
Q Consensus 290 g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~ 334 (392)
|++-+|...|++.....+..... .....---+....+.+++..+
T Consensus 19 GQlvEA~deY~~La~~l~k~~~~-~~~~~fte~qkk~i~Kia~cL 62 (106)
T PF08910_consen 19 GQLVEAIDEYQRLARQLKKEVQS-HQDSDFTEDQKKTIGKIATCL 62 (106)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHT--SS--SS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHH
Confidence 88899999999976655544443 121211123344455555433
No 416
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=23.97 E-value=5 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=9.7
Q ss_pred HHHHHHH-HHhhhhh
Q 016307 226 LCSQLGA-VLGMLGD 239 (392)
Q Consensus 226 ~C~~h~~-~L~~fC~ 239 (392)
.|+.|++ .+.+||.
T Consensus 2 ~C~~H~~~~~~~fC~ 16 (39)
T cd00021 2 LCDEHGEEPLSLFCE 16 (39)
T ss_pred CCCccCCcceEEEeC
Confidence 3667755 7888885
No 417
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=23.91 E-value=2.3e+02 Score=29.69 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
|....+.-..|-..+..+..|...|.++|+..+
T Consensus 36 ik~~ikdg~~li~a~knls~a~~kfa~tl~~f~ 68 (812)
T KOG1451|consen 36 IKELIKDGKELISALKNLSSAVRKFAQTLQEFK 68 (812)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 333333334444444567777788888877554
No 418
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.79 E-value=1.6e+02 Score=16.97 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+++.+-..+...|+.+.|...|++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777888888999999888877654
No 419
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.74 E-value=3e+02 Score=28.65 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
|....|++++|+..+++.- ..+.|....+...|.++..+|+.++|...|.+.+.
T Consensus 13 il~e~g~~~~AL~~L~~~~--------------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--------------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--------------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444567777766554322 12235566778889999999998888876665543
No 420
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.71 E-value=7.1e+02 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=14.7
Q ss_pred CCCCccccc----chhhHHHHHHHHHHHh
Q 016307 124 PLCGADIEK----IEADTTLQDVVDRFIE 148 (392)
Q Consensus 124 P~C~~~~~~----~~~n~~l~~lv~~~~~ 148 (392)
-.|+..+.. =-||....+++..++.
T Consensus 54 ~~~g~~f~~p~e~DDPn~~~~~Il~~lr~ 82 (359)
T PF10498_consen 54 SKAGRKFEQPQEYDDPNATISNILDELRK 82 (359)
T ss_pred HhcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence 344444442 3567777777777664
No 421
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.33 E-value=3.4e+02 Score=20.70 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
...-.+|..+...|++++|++.+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH
Confidence 34556777888889988888555
No 422
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=23.27 E-value=4.1e+02 Score=21.64 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHhc
Q 016307 333 VDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 333 ~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~~ 380 (392)
.....|+++++-..+..+..|+..| ..+.+. ..+-.+|..+|.++...
T Consensus 40 ~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~ 90 (124)
T TIGR00208 40 QAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRR 90 (124)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Confidence 3334488888888888888888887 444433 35667777777776543
No 423
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=23.26 E-value=5.8e+02 Score=23.35 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=39.2
Q ss_pred hhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 242 ~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
...+++..|+..++.... .- +.. .....+.=.++..++..+++++|+..|++.++.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~---~y-P~s----~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDN---RY-PFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHH---hC-CCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 456777777777765533 22 211 234445678999999999999999999998764
No 424
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=3.5e+02 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~ 353 (392)
|..+..++.++.|++.|+++++.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566677777666666554
No 425
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=23.00 E-value=3.5e+02 Score=22.59 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHh
Q 016307 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~~le~l 357 (392)
....|++++.+|..+
T Consensus 115 ~s~~~~~mi~iL~~I 129 (142)
T PF04048_consen 115 RSQEYKEMIEILDQI 129 (142)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456666665555
No 426
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=22.88 E-value=4.8e+02 Score=29.51 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~ 360 (392)
++..+....|++.++++.++.-+..+. .....+.+++.++-.++..+...|=+.+|..+++.+++++.....+
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s-------~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFS-------LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 334444445555565555554443322 2223344777777777777777788999999999999998776333
No 427
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.87 E-value=5e+02 Score=22.99 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHHH
Q 016307 291 DLQAARSYYVRSLN 304 (392)
Q Consensus 291 ~l~~A~~~~e~sl~ 304 (392)
++......|..++.
T Consensus 46 el~~~~~efg~~~~ 59 (200)
T cd07624 46 EYFDELKEYSPIFQ 59 (200)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 428
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.78 E-value=1.7e+02 Score=28.20 Aligned_cols=63 Identities=24% Similarity=0.187 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...++.|-|.++.|++++|.+.|+.++++. .....+| -+++......|++..|+.+..+.++.
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvs-----------GyqpllA---YniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVS-----------GYQPLLA---YNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhc-----------CCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 466788999999999999999999988651 1111233 36677777778988888777665544
No 429
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=22.62 E-value=2.4e+02 Score=32.94 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=46.2
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHH---HHH-----------hhc---CCCCCcchhHHHHH-------HHHHHH
Q 016307 279 LNKIGDLKYYG--GDLQAARSYYVRSLNVR---RDA-----------VKR---HSNVPSQVLDVAVS-------LAKVAD 332 (392)
Q Consensus 279 ~~~l~~l~~~~--g~l~~A~~~~e~sl~~~---~~~-----------~~~---~~~~~~~~~dla~s-------l~~la~ 332 (392)
...|..+.+.+ +++++|+..++++|..+ ++. ++. ..+....+|+-|.. .-+|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444444443 69999999999998743 211 000 11112222333322 234677
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHH
Q 016307 333 VDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 333 ~~~~~g~~~~A~~~~~eal~~le 355 (392)
+|+.-+.++.|.++|+++++-+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhc
Confidence 88888888889888888887766
No 430
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.41 E-value=3.6e+02 Score=26.99 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 328 AKVA-DVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 328 ~~la-~~~~~~g~~~~A~~~~~eal~~le 355 (392)
.+++ ..++...++.++++-++.-+..+|
T Consensus 290 EK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 290 EKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3443 445556777777777777777666
No 431
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.36 E-value=4.6e+02 Score=21.79 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCch
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 363 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~ 363 (392)
.|.+++|-..+.+++++.+.+-..+. ---.-|| +.....|+.++..+|++++++.--+.++-.+.+- +.+.++
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEa-FDh~GFD-A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEA-FDHDGFD-AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS----HHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhh-cccccHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 47789999999999988665421110 0011134 5567789999999999999999999999998887 555443
No 432
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.31 E-value=22 Score=33.77 Aligned_cols=39 Identities=23% Similarity=0.531 Sum_probs=18.1
Q ss_pred eeccccccccccCceeccc-----cCcchHHhHhcC----CCCCCCCcc
Q 016307 90 LSCMICQALLFECSKCTPC-----SHVYCKACISRF----KDCPLCGAD 129 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C-----~h~fC~~Ci~~~----~~CP~C~~~ 129 (392)
-.||||-.... -.++..= .+.+|..|-..| ..||.|...
T Consensus 173 g~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EE-EEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CcCCCCCCcCc-eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 46999998644 2222222 456799998888 469999864
No 433
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=22.29 E-value=56 Score=32.54 Aligned_cols=42 Identities=24% Similarity=0.490 Sum_probs=27.6
Q ss_pred ccCceeccccccccccCceeccccCcchHHhHhcC-CCCCCCCcccc
Q 016307 86 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIE 131 (392)
Q Consensus 86 ~~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~ 131 (392)
.++++.|-+|...+. +++.|. .|. | .||... +.||.|.+.|.
T Consensus 264 ~iGdyiCqLCK~kYe-D~F~LA-QHr-C-~RIV~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 264 VIGDYICQLCKEKYE-DAFALA-QHR-C-PRIVHVEYRCPECDKVFS 306 (500)
T ss_pred cHHHHHHHHHHHhhh-hHHHHh-hcc-C-CeeEEeeecCCccccccc
Confidence 457899999999977 777663 221 1 123222 46999988775
No 434
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=22.23 E-value=2.6e+02 Score=25.11 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016307 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~~le~l 357 (392)
+.+...++.+.+.++++
T Consensus 137 ~~~q~~~~~~k~kf~KL 153 (201)
T cd07660 137 EEAQRRFQAHKDKYEKL 153 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555554
No 435
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.11 E-value=4e+02 Score=27.89 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=7.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 016307 269 LEIIHTLSVSLNKIGDL 285 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l 285 (392)
.+++..+...++++..+
T Consensus 416 ~~l~~~~~~il~kin~l 432 (547)
T PRK10807 416 AQIQQKLMEALDKINNL 432 (547)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34444444455544444
No 436
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.10 E-value=1.1e+02 Score=24.96 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
+......+..+.....++..++..|+.+++.....
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l 42 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETAIETLEDL 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555555556667777777776655444
No 437
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.08 E-value=49 Score=33.61 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=20.1
Q ss_pred CceeccccCcchHHhHhcCC---CCCCCCc
Q 016307 102 CSKCTPCSHVYCKACISRFK---DCPLCGA 128 (392)
Q Consensus 102 ~p~~~~C~h~fC~~Ci~~~~---~CP~C~~ 128 (392)
.++.=.|+|.||+.|...|. .|+....
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~ 207 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKK 207 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHH
Confidence 56666899999999998883 4665543
No 438
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=6.8e+02 Score=23.61 Aligned_cols=45 Identities=18% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
-.++++|...|.+++|.=.|+|.+ -..|.+.-...+++.++.-++
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~l------l~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELL------LIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHH------HcCCCcHHHHHHHHHHHHHHh
Confidence 446788888888887775555543 556777777888777655443
No 439
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=4e+02 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.--||.++...+++..|...|.+++++
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 345699999999999999999999886
No 440
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.46 E-value=93 Score=25.15 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
+.....+|..+......+...+..|+.+.+......
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555556666677767666655543
No 441
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=21.22 E-value=3.3e+02 Score=27.34 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred HhCCCCchhhhHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHH-HHHHHh
Q 016307 262 MKLPMDDLEIIHTLSVSLNKIGD----LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV-ADVDRS 336 (392)
Q Consensus 262 ~~L~~~~~e~~~~i~~~~~~l~~----l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~l-a~~~~~ 336 (392)
.+++.-..+++..+...++.... |......+.++.......++.........+.......++...+... ..+...
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~ 330 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAY 330 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 337 IGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+..+..-..+|......+..+ +....-.. ...+..++..+..
T Consensus 331 ~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~e 374 (412)
T PF04108_consen 331 IDELEQLCEFYEGFLSAYDSLLLEVERRRAV-RDKMKKIIREANE 374 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
No 442
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.07 E-value=9.7e+02 Score=25.11 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=18.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 334 DRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 334 ~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+..-|++.+|.+.+.+....+..+
T Consensus 187 l~~~Gd~~~A~e~l~~l~~~~~~l 210 (569)
T PRK04778 187 LTESGDYVEAREILDQLEEELAAL 210 (569)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH
Confidence 334599999998888877777766
No 443
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.85 E-value=92 Score=21.67 Aligned_cols=40 Identities=23% Similarity=0.647 Sum_probs=28.7
Q ss_pred eeccccccccc--cC-ceeccccCcchHHhHhcCCCCCC--CCcc
Q 016307 90 LSCMICQALLF--EC-SKCTPCSHVYCKACISRFKDCPL--CGAD 129 (392)
Q Consensus 90 l~C~iC~~~~~--~~-p~~~~C~h~fC~~Ci~~~~~CP~--C~~~ 129 (392)
-.|++|...|. ++ .+...|+-.+=+.|+.....|-. |...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~ 50 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTG 50 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCC
Confidence 45999999884 33 44456998888999988777765 6544
No 444
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=20.72 E-value=3.7e+02 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
...|.+++|+.+|+++++...+++...++.
T Consensus 17 D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 17 EKEGNAEDAITNYKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 456899999999999999888887776663
No 445
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=20.68 E-value=4.5e+02 Score=25.34 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHHHHHHHH-Hh-------hcCCchHHHHHHHHHHHHHHHhcccccc
Q 016307 336 SIGNEDVAVDGFQEAIKRLE-SL-------TLKPEEAGLEQRVRFLFQLLVVSSLDYE 385 (392)
Q Consensus 336 ~~g~~~~A~~~~~eal~~le-~l-------~~~~~~~~l~~~l~~~~~~l~~~~~~~~ 385 (392)
..|+.++|...+.++..+-. .+ ....+.+.+.+.-..|...=+.|...|+
T Consensus 143 ~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D 200 (319)
T KOG0796|consen 143 EEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVND 200 (319)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccc
Confidence 35888888877777766653 11 3334444444444455555555555544
No 446
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=20.40 E-value=1.9e+02 Score=31.06 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+++.+...+...|+.++|++.|++..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356677777777788888887777754
No 447
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=1.7e+02 Score=24.78 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC--CCCcc----hh------HHHHHHHHHHHHHHhcC
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS--NVPSQ----VL------DVAVSLAKVADVDRSIG 338 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~--~~~~~----~~------dla~sl~~la~~~~~~g 338 (392)
+...+......+..|....+.+..++..|..+++..+....... +...- .| +.-..+-.+|.=+..-.
T Consensus 11 l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~ 90 (145)
T COG1730 11 LAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEK 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeee
Confidence 34445555566666666777777888888888876665443331 11000 00 00001111222222235
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 016307 339 NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 339 ~~~~A~~~~~eal~~le~l 357 (392)
++++|+++++.-++-+++.
T Consensus 91 ~~~eAie~l~k~~~~l~~~ 109 (145)
T COG1730 91 SADEAIEFLKKRIEELEKA 109 (145)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 6777777777776666655
No 448
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.04 E-value=6.2e+02 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=15.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 332 DVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+-+....++++.+.|..++...-++
T Consensus 102 ~vKE~kk~Fdk~s~~yd~al~k~~~~ 127 (200)
T cd07603 102 KVKESKKHFEKISDDLDNALVKNAQA 127 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445566666666666666665445
Done!