Query 016307
Match_columns 392
No_of_seqs 266 out of 2427
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 102.0 5.1 62 88-150 12-83 (92)
2 1t1h_A Gspef-atpub14, armadill 99.3 1.2E-12 4.3E-17 98.5 2.5 61 88-149 7-74 (78)
3 1jm7_B BARD1, BRCA1-associated 99.3 2.4E-12 8.1E-17 104.9 4.2 63 88-151 21-88 (117)
4 1wgm_A Ubiquitin conjugation f 99.2 1.6E-11 5.5E-16 96.5 7.7 63 88-151 21-90 (98)
5 2kr4_A Ubiquitin conjugation f 99.2 3.2E-12 1.1E-16 97.9 3.1 62 88-150 13-80 (85)
6 2kre_A Ubiquitin conjugation f 99.2 4.7E-12 1.6E-16 100.0 4.0 61 88-149 28-94 (100)
7 3fl2_A E3 ubiquitin-protein li 99.2 6.4E-12 2.2E-16 103.4 2.5 61 88-149 51-119 (124)
8 4ayc_A E3 ubiquitin-protein li 99.1 1.8E-11 6E-16 102.7 3.8 59 88-147 52-114 (138)
9 2y43_A E3 ubiquitin-protein li 99.1 1.8E-11 6.2E-16 96.5 3.3 63 88-151 21-90 (99)
10 3lrq_A E3 ubiquitin-protein li 99.1 2E-11 7E-16 96.4 2.6 61 88-149 21-89 (100)
11 2egp_A Tripartite motif-contai 99.1 1.2E-11 4.2E-16 93.1 0.7 52 88-140 11-75 (79)
12 2yu4_A E3 SUMO-protein ligase 99.1 4.4E-11 1.5E-15 93.4 3.6 62 88-150 6-83 (94)
13 1z6u_A NP95-like ring finger p 99.1 4.4E-11 1.5E-15 101.6 3.5 60 88-148 77-144 (150)
14 2ckl_A Polycomb group ring fin 99.1 5.3E-11 1.8E-15 95.4 3.0 60 88-148 14-84 (108)
15 2csy_A Zinc finger protein 183 99.1 1.1E-10 3.8E-15 88.4 4.5 50 88-138 14-68 (81)
16 3l11_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 94.5 4.6 60 88-148 14-87 (115)
17 3n71_A Histone lysine methyltr 99.0 2.3E-09 7.9E-14 108.3 15.0 130 241-379 319-450 (490)
18 3qww_A SET and MYND domain-con 99.0 3.8E-09 1.3E-13 105.1 13.9 118 244-371 311-431 (433)
19 1bor_A Transcription factor PM 99.0 1.6E-10 5.6E-15 81.0 2.4 44 88-132 5-49 (56)
20 2f42_A STIP1 homology and U-bo 99.0 1.8E-10 6.3E-15 99.9 3.0 61 88-149 105-172 (179)
21 2c2l_A CHIP, carboxy terminus 99.0 3E-10 1E-14 106.2 4.5 61 88-149 207-274 (281)
22 2ysl_A Tripartite motif-contai 98.9 6E-10 2.1E-14 82.4 4.7 44 88-132 19-69 (73)
23 2ckl_B Ubiquitin ligase protei 98.9 2.7E-10 9.1E-15 98.4 3.1 60 88-148 53-121 (165)
24 1jm7_A BRCA1, breast cancer ty 98.9 1.2E-10 4E-15 93.8 0.8 60 89-149 21-89 (112)
25 3hct_A TNF receptor-associated 98.9 4.3E-10 1.5E-14 91.5 3.8 58 88-146 17-81 (118)
26 2ecw_A Tripartite motif-contai 98.9 1.7E-10 5.7E-15 87.9 1.1 52 88-140 18-81 (85)
27 2d8t_A Dactylidin, ring finger 98.9 8.2E-10 2.8E-14 81.3 4.3 44 88-132 14-61 (71)
28 2yur_A Retinoblastoma-binding 98.9 5.1E-10 1.8E-14 83.2 3.2 43 88-131 14-63 (74)
29 2ecv_A Tripartite motif-contai 98.9 1.9E-10 6.5E-15 87.6 0.7 51 88-139 18-80 (85)
30 2ecy_A TNF receptor-associated 98.9 9.3E-10 3.2E-14 79.8 3.9 44 88-132 14-62 (66)
31 3qwp_A SET and MYND domain-con 98.9 1.1E-08 3.8E-13 101.6 12.8 126 244-378 300-427 (429)
32 2djb_A Polycomb group ring fin 98.9 1.2E-09 4E-14 80.7 4.1 44 88-132 14-62 (72)
33 3htk_C E3 SUMO-protein ligase 98.9 1.9E-09 6.5E-14 98.1 5.9 62 88-150 180-252 (267)
34 4ic3_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 82.4 2.6 44 88-132 23-67 (74)
35 3knv_A TNF receptor-associated 98.9 3E-10 1E-14 95.4 0.4 51 79-130 18-76 (141)
36 2ct2_A Tripartite motif protei 98.8 5.1E-10 1.7E-14 85.9 1.0 44 88-132 14-68 (88)
37 1g25_A CDK-activating kinase a 98.8 1.1E-09 3.6E-14 79.2 2.3 44 88-132 2-55 (65)
38 2ysj_A Tripartite motif-contai 98.8 2.6E-09 8.9E-14 76.6 3.9 38 88-126 19-63 (63)
39 1rmd_A RAG1; V(D)J recombinati 98.8 1.5E-09 5E-14 88.0 2.8 56 88-144 22-85 (116)
40 2ea6_A Ring finger protein 4; 98.8 1.8E-09 6.1E-14 78.8 2.8 43 88-131 14-67 (69)
41 2yho_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 81.6 2.3 43 89-132 18-61 (79)
42 3ng2_A RNF4, snurf, ring finge 98.7 1.7E-09 5.9E-14 79.4 1.3 44 88-132 9-63 (71)
43 2ecj_A Tripartite motif-contai 98.7 6.2E-09 2.1E-13 73.1 4.1 38 88-126 14-58 (58)
44 1e4u_A Transcriptional repress 98.7 5.2E-09 1.8E-13 78.4 3.4 45 88-132 10-62 (78)
45 1x4j_A Ring finger protein 38; 98.7 4.7E-09 1.6E-13 78.0 3.0 45 86-131 20-71 (75)
46 2ecg_A Baculoviral IAP repeat- 98.7 4.2E-09 1.4E-13 78.4 2.5 44 88-132 24-68 (75)
47 3hcs_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 91.6 2.1 58 88-146 17-81 (170)
48 2xeu_A Ring finger protein 4; 98.7 3.3E-09 1.1E-13 76.1 1.2 44 88-132 2-56 (64)
49 1chc_A Equine herpes virus-1 r 98.7 5.1E-09 1.7E-13 76.2 2.1 45 88-132 4-52 (68)
50 1iym_A EL5; ring-H2 finger, ub 98.7 1.1E-08 3.7E-13 71.1 3.1 44 88-131 4-54 (55)
51 2ecm_A Ring finger and CHY zin 98.6 8.1E-09 2.8E-13 71.7 2.2 43 89-131 5-54 (55)
52 2kiz_A E3 ubiquitin-protein li 98.6 1.5E-08 5E-13 74.0 3.6 45 88-132 13-63 (69)
53 3edt_B KLC 2, kinesin light ch 98.6 1.2E-06 4.1E-11 79.1 17.1 169 196-379 14-184 (283)
54 2ect_A Ring finger protein 126 98.6 1.4E-08 4.8E-13 76.0 3.4 45 88-132 14-64 (78)
55 2ecn_A Ring finger protein 141 98.6 7.8E-09 2.7E-13 75.7 1.1 43 88-132 14-60 (70)
56 2l0b_A E3 ubiquitin-protein li 98.6 1.3E-08 4.4E-13 78.8 2.2 43 88-131 39-88 (91)
57 2ea5_A Cell growth regulator w 98.6 3.1E-08 1.1E-12 72.1 3.7 44 88-132 14-58 (68)
58 3n71_A Histone lysine methyltr 98.5 5.6E-07 1.9E-11 90.8 13.3 145 194-353 320-464 (490)
59 3ulq_A Response regulator aspa 98.5 3.8E-06 1.3E-10 80.9 18.6 171 189-379 109-279 (383)
60 3qww_A SET and MYND domain-con 98.5 5E-07 1.7E-11 89.7 12.2 106 269-380 289-398 (433)
61 2ep4_A Ring finger protein 24; 98.5 3.4E-08 1.2E-12 73.0 2.8 45 88-132 14-64 (74)
62 4ap4_A E3 ubiquitin ligase RNF 98.5 1.8E-08 6.1E-13 83.2 0.7 44 88-132 6-60 (133)
63 1v87_A Deltex protein 2; ring- 98.5 2.9E-08 9.9E-13 80.0 1.7 43 89-132 25-94 (114)
64 2ifu_A Gamma-SNAP; membrane fu 98.5 6.6E-06 2.3E-10 77.1 17.5 143 194-358 47-189 (307)
65 3nf1_A KLC 1, kinesin light ch 98.4 1.2E-05 4.2E-10 73.7 18.5 180 185-379 29-210 (311)
66 3edt_B KLC 2, kinesin light ch 98.4 9.9E-06 3.4E-10 73.0 17.3 154 188-356 48-201 (283)
67 3q15_A PSP28, response regulat 98.4 7E-06 2.4E-10 79.0 17.2 172 187-379 105-276 (378)
68 3ro3_A PINS homolog, G-protein 98.4 2E-05 6.7E-10 64.4 16.5 136 231-379 9-144 (164)
69 3t6p_A Baculoviral IAP repeat- 98.4 1.1E-07 3.6E-12 91.3 2.4 44 88-132 294-338 (345)
70 3gw4_A Uncharacterized protein 98.4 9.8E-06 3.3E-10 69.8 14.9 136 231-378 26-161 (203)
71 2ecl_A Ring-box protein 2; RNF 98.4 2.3E-07 7.8E-12 70.0 3.7 45 88-132 14-76 (81)
72 1wim_A KIAA0161 protein; ring 98.4 6.8E-08 2.3E-12 75.1 0.6 60 88-148 4-83 (94)
73 2vje_B MDM4 protein; proto-onc 98.4 8.2E-08 2.8E-12 68.8 1.0 43 89-132 7-56 (63)
74 3sf4_A G-protein-signaling mod 98.3 2.7E-05 9.1E-10 74.3 19.0 168 193-381 197-364 (406)
75 3gw4_A Uncharacterized protein 98.3 1E-05 3.5E-10 69.7 14.6 164 187-370 30-193 (203)
76 2vje_A E3 ubiquitin-protein li 98.3 9.3E-08 3.2E-12 68.7 0.3 44 88-132 7-57 (64)
77 3nf1_A KLC 1, kinesin light ch 98.3 4E-05 1.4E-09 70.1 18.2 150 192-356 78-227 (311)
78 3u3w_A Transcriptional activat 98.3 6.6E-05 2.3E-09 69.5 19.3 170 190-379 82-251 (293)
79 1qqe_A Vesicular transport pro 98.3 2.5E-05 8.5E-10 72.6 16.2 128 238-378 44-172 (292)
80 3ro3_A PINS homolog, G-protein 98.3 5.7E-05 1.9E-09 61.6 16.6 145 191-356 17-161 (164)
81 1qqe_A Vesicular transport pro 98.2 1.3E-05 4.4E-10 74.6 13.8 139 195-354 49-188 (292)
82 2ifu_A Gamma-SNAP; membrane fu 98.2 1.3E-05 4.5E-10 75.1 13.8 169 194-379 2-170 (307)
83 2y1n_A E3 ubiquitin-protein li 98.2 3.2E-07 1.1E-11 88.7 2.3 43 89-132 332-379 (389)
84 4ap4_A E3 ubiquitin ligase RNF 98.2 3E-07 1E-11 75.7 1.4 45 87-132 70-125 (133)
85 3sf4_A G-protein-signaling mod 98.2 6.8E-05 2.3E-09 71.4 18.0 137 230-379 186-322 (406)
86 4a1s_A PINS, partner of inscut 98.2 7.4E-05 2.5E-09 71.8 17.9 136 231-379 223-358 (411)
87 3ulq_A Response regulator aspa 98.2 4.8E-05 1.6E-09 73.1 16.2 145 193-357 153-297 (383)
88 4a1s_A PINS, partner of inscut 98.2 4.8E-05 1.6E-09 73.2 16.2 162 193-375 96-274 (411)
89 3qwp_A SET and MYND domain-con 98.1 5.3E-06 1.8E-10 82.3 8.6 100 273-379 285-386 (429)
90 4gyw_A UDP-N-acetylglucosamine 98.1 1.6E-05 5.3E-10 84.0 12.6 132 226-381 4-162 (723)
91 3ro2_A PINS homolog, G-protein 98.1 0.00015 5.2E-09 66.5 17.9 136 231-379 183-318 (338)
92 3ro2_A PINS homolog, G-protein 98.1 0.00012 4.2E-09 67.1 16.9 168 190-378 50-237 (338)
93 4gcn_A Protein STI-1; structur 98.1 4.6E-05 1.6E-09 61.7 12.3 105 231-353 8-112 (127)
94 4gco_A Protein STI-1; structur 98.1 0.00011 3.8E-09 59.4 14.3 115 228-373 10-124 (126)
95 3q15_A PSP28, response regulat 98.0 4.3E-05 1.5E-09 73.4 13.4 133 235-379 105-237 (378)
96 2qfc_A PLCR protein; TPR, HTH, 98.0 8.9E-05 3E-09 68.6 15.1 134 235-380 119-252 (293)
97 4gyw_A UDP-N-acetylglucosamine 98.0 2.8E-05 9.6E-10 82.1 12.8 99 234-357 80-178 (723)
98 3dpl_R Ring-box protein 1; ubi 98.0 1.5E-06 5.2E-11 68.9 2.3 44 88-131 36-100 (106)
99 4gcn_A Protein STI-1; structur 98.0 6.3E-05 2.2E-09 60.8 12.0 93 273-379 5-98 (127)
100 2bay_A PRE-mRNA splicing facto 97.9 2.6E-06 9E-11 60.4 1.2 43 89-132 3-50 (61)
101 3upv_A Heat shock protein STI1 97.9 0.00032 1.1E-08 55.8 13.8 122 231-377 4-125 (126)
102 3u3w_A Transcriptional activat 97.9 0.00023 7.8E-09 65.8 14.4 116 232-359 156-272 (293)
103 2hr2_A Hypothetical protein; a 97.9 0.0011 3.6E-08 56.3 17.2 140 231-377 11-156 (159)
104 2hr2_A Hypothetical protein; a 97.9 0.00022 7.4E-09 60.6 12.6 104 275-380 10-118 (159)
105 4gco_A Protein STI-1; structur 97.8 0.00028 9.5E-09 57.0 12.5 91 270-380 7-97 (126)
106 2qfc_A PLCR protein; TPR, HTH, 97.8 0.00024 8.3E-09 65.7 13.7 116 232-359 156-272 (293)
107 3rkv_A Putative peptidylprolyl 97.8 0.00053 1.8E-08 57.2 14.4 132 231-382 11-150 (162)
108 4i17_A Hypothetical protein; T 97.8 0.00038 1.3E-08 61.3 14.2 157 187-380 11-169 (228)
109 4b4t_Q 26S proteasome regulato 97.8 0.00016 5.5E-09 70.0 12.5 176 189-377 10-188 (434)
110 4a0k_B E3 ubiquitin-protein li 97.8 3.4E-06 1.2E-10 67.8 0.4 44 88-131 47-111 (117)
111 4g1t_A Interferon-induced prot 97.7 0.00031 1.1E-08 68.8 13.7 92 275-371 50-143 (472)
112 1p5q_A FKBP52, FK506-binding p 97.7 0.00046 1.6E-08 65.6 13.9 133 228-380 144-280 (336)
113 4g1t_A Interferon-induced prot 97.7 0.00043 1.5E-08 67.8 13.8 129 233-375 53-183 (472)
114 3vtx_A MAMA; tetratricopeptide 97.6 0.00032 1.1E-08 59.5 10.2 61 278-352 109-169 (184)
115 4i17_A Hypothetical protein; T 97.6 0.00047 1.6E-08 60.7 11.6 152 191-374 50-224 (228)
116 3rkv_A Putative peptidylprolyl 97.6 0.0012 4.1E-08 55.0 13.5 101 274-380 9-113 (162)
117 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0013 4.3E-08 56.8 13.9 131 230-380 37-172 (198)
118 2pl2_A Hypothetical conserved 97.6 0.00033 1.1E-08 61.9 10.0 141 193-379 49-200 (217)
119 4ga2_A E3 SUMO-protein ligase 97.5 0.00043 1.5E-08 57.5 9.7 78 281-378 36-113 (150)
120 3uq3_A Heat shock protein STI1 97.5 0.007 2.4E-07 53.2 18.1 157 190-378 12-187 (258)
121 4eqf_A PEX5-related protein; a 97.5 0.0024 8.2E-08 60.2 15.1 161 186-377 68-260 (365)
122 2vyi_A SGTA protein; chaperone 97.4 0.0049 1.7E-07 47.8 14.2 120 230-380 11-130 (131)
123 3gyz_A Chaperone protein IPGC; 97.4 0.0019 6.5E-08 54.0 12.0 102 228-354 33-134 (151)
124 1ihg_A Cyclophilin 40; ppiase 97.4 0.0011 3.9E-08 63.9 12.1 131 231-381 223-358 (370)
125 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00096 3.3E-08 66.2 11.8 134 226-379 263-400 (457)
126 2d8s_A Cellular modulator of i 97.4 8E-05 2.7E-09 55.7 3.0 44 89-132 15-70 (80)
127 1hz4_A MALT regulatory protein 97.4 0.004 1.4E-07 59.0 15.7 147 191-357 22-168 (373)
128 4eqf_A PEX5-related protein; a 97.3 0.0035 1.2E-07 59.0 14.6 83 277-379 214-296 (365)
129 2vgx_A Chaperone SYCD; alterna 97.3 0.0021 7.2E-08 53.2 11.2 123 228-378 18-140 (148)
130 1elr_A TPR2A-domain of HOP; HO 97.3 0.012 4.2E-07 45.5 15.3 123 232-379 5-127 (131)
131 4b4t_Q 26S proteasome regulato 97.3 0.0035 1.2E-07 60.4 14.3 145 193-358 65-209 (434)
132 3uq3_A Heat shock protein STI1 97.3 0.0066 2.2E-07 53.4 14.9 129 231-378 5-153 (258)
133 3vk6_A E3 ubiquitin-protein li 97.2 8.3E-05 2.8E-09 57.0 1.6 44 90-133 2-50 (101)
134 2lni_A Stress-induced-phosphop 97.2 0.0038 1.3E-07 48.9 11.7 117 231-378 16-132 (133)
135 2xcb_A PCRH, regulatory protei 97.2 0.0039 1.3E-07 50.7 11.7 121 230-378 17-137 (142)
136 1fch_A Peroxisomal targeting s 97.2 0.0036 1.2E-07 58.7 13.0 124 232-380 218-346 (368)
137 4ga2_A E3 SUMO-protein ligase 97.2 0.0021 7.1E-08 53.2 9.7 114 232-376 32-146 (150)
138 3upv_A Heat shock protein STI1 97.2 0.0032 1.1E-07 49.7 10.4 85 276-380 4-88 (126)
139 1na3_A Designed protein CTPR2; 97.2 0.0063 2.1E-07 44.5 11.3 82 276-377 9-90 (91)
140 1fch_A Peroxisomal targeting s 97.1 0.0071 2.4E-07 56.6 14.2 84 276-379 217-300 (368)
141 3sz7_A HSC70 cochaperone (SGT) 97.1 0.002 6.9E-08 53.7 9.2 99 231-354 11-109 (164)
142 1hz4_A MALT regulatory protein 97.1 0.013 4.4E-07 55.4 16.0 134 231-378 14-149 (373)
143 3gyz_A Chaperone protein IPGC; 97.1 0.0058 2E-07 51.0 12.0 89 272-380 32-120 (151)
144 2l6j_A TPR repeat-containing p 97.1 0.0059 2E-07 46.4 11.3 86 277-382 5-96 (111)
145 1na0_A Designed protein CTPR3; 97.1 0.013 4.6E-07 44.8 13.4 114 233-377 11-124 (125)
146 3hym_B Cell division cycle pro 97.1 0.0029 1E-07 58.0 10.7 124 234-379 162-285 (330)
147 3hym_B Cell division cycle pro 97.0 0.0012 4.2E-08 60.6 7.6 126 231-378 193-318 (330)
148 3urz_A Uncharacterized protein 97.0 0.0043 1.5E-07 54.1 10.8 93 188-305 9-117 (208)
149 2vq2_A PILW, putative fimbrial 97.0 0.011 3.8E-07 50.7 13.3 89 191-304 16-105 (225)
150 3sz7_A HSC70 cochaperone (SGT) 97.0 0.0046 1.6E-07 51.4 10.3 86 274-379 9-94 (164)
151 3urz_A Uncharacterized protein 97.0 0.029 1E-06 48.7 15.8 117 238-378 11-136 (208)
152 2ct0_A Non-SMC element 1 homol 97.0 0.00046 1.6E-08 50.6 3.2 44 88-131 14-63 (74)
153 2ho1_A Type 4 fimbrial biogene 97.0 0.009 3.1E-07 52.7 12.5 21 187-207 41-61 (252)
154 1w3b_A UDP-N-acetylglucosamine 96.9 0.004 1.4E-07 59.2 10.6 48 325-378 136-183 (388)
155 3qky_A Outer membrane assembly 96.9 0.0026 8.9E-08 57.2 8.6 166 186-380 18-201 (261)
156 4abn_A Tetratricopeptide repea 96.9 0.003 1E-07 62.9 9.8 120 232-379 171-307 (474)
157 2vsy_A XCC0866; transferase, g 96.9 0.0049 1.7E-07 62.5 11.2 116 231-377 23-138 (568)
158 1wao_1 Serine/threonine protei 96.9 0.0037 1.3E-07 62.4 10.0 110 233-373 8-117 (477)
159 1p5q_A FKBP52, FK506-binding p 96.8 0.0045 1.5E-07 58.6 9.9 103 272-380 143-246 (336)
160 2v5f_A Prolyl 4-hydroxylase su 96.8 0.018 6.2E-07 44.4 11.8 79 280-371 9-87 (104)
161 2pl2_A Hypothetical conserved 96.8 0.0039 1.3E-07 54.8 8.8 62 233-305 7-68 (217)
162 1w3b_A UDP-N-acetylglucosamine 96.8 0.0078 2.7E-07 57.2 11.5 48 326-379 205-252 (388)
163 2h6f_A Protein farnesyltransfe 96.8 0.0032 1.1E-07 61.1 8.6 66 229-305 129-195 (382)
164 3q49_B STIP1 homology and U bo 96.8 0.034 1.2E-06 43.8 13.5 100 232-356 10-109 (137)
165 2xpi_A Anaphase-promoting comp 96.8 0.012 4.3E-07 59.0 13.2 88 278-379 443-531 (597)
166 2h6f_A Protein farnesyltransfe 96.8 0.0086 2.9E-07 58.0 11.4 134 228-378 94-248 (382)
167 1ihg_A Cyclophilin 40; ppiase 96.7 0.0091 3.1E-07 57.5 11.4 102 273-380 220-323 (370)
168 1a17_A Serine/threonine protei 96.7 0.048 1.7E-06 44.2 14.5 99 230-353 12-110 (166)
169 3ma5_A Tetratricopeptide repea 96.7 0.024 8.3E-07 43.0 11.7 67 277-357 8-74 (100)
170 2ho1_A Type 4 fimbrial biogene 96.7 0.02 7E-07 50.3 12.8 51 323-379 140-190 (252)
171 2q7f_A YRRB protein; TPR, prot 96.7 0.01 3.4E-07 51.8 10.6 141 193-378 67-207 (243)
172 2vgx_A Chaperone SYCD; alterna 96.7 0.011 3.7E-07 48.7 10.1 86 274-379 19-104 (148)
173 2y4t_A DNAJ homolog subfamily 96.7 0.042 1.4E-06 52.8 15.7 107 232-352 212-323 (450)
174 1hh8_A P67PHOX, NCF-2, neutrop 96.6 0.0082 2.8E-07 51.6 9.4 116 236-379 11-136 (213)
175 1elw_A TPR1-domain of HOP; HOP 96.6 0.035 1.2E-06 41.9 12.1 110 233-373 6-115 (118)
176 3q49_B STIP1 homology and U bo 96.6 0.022 7.4E-07 45.1 11.1 84 276-379 9-92 (137)
177 3u4t_A TPR repeat-containing p 96.6 0.0031 1.1E-07 56.4 6.5 125 190-350 10-134 (272)
178 2vq2_A PILW, putative fimbrial 96.6 0.024 8.3E-07 48.5 12.0 97 231-352 8-105 (225)
179 3cv0_A Peroxisome targeting si 96.6 0.07 2.4E-06 48.4 15.7 152 187-376 25-218 (327)
180 2dba_A Smooth muscle cell asso 96.6 0.052 1.8E-06 43.1 13.1 113 233-373 30-142 (148)
181 3as5_A MAMA; tetratricopeptide 96.5 0.044 1.5E-06 45.0 13.0 142 192-378 17-158 (186)
182 4abn_A Tetratricopeptide repea 96.5 0.017 5.7E-07 57.4 12.0 114 232-377 103-226 (474)
183 2xpi_A Anaphase-promoting comp 96.5 0.022 7.5E-07 57.2 12.9 117 234-374 478-594 (597)
184 3k9i_A BH0479 protein; putativ 96.5 0.026 8.9E-07 43.9 10.7 88 244-353 3-90 (117)
185 2fbn_A 70 kDa peptidylprolyl i 96.5 0.022 7.6E-07 48.7 11.2 99 272-380 34-138 (198)
186 3fp2_A TPR repeat-containing p 96.5 0.018 6.2E-07 56.8 12.0 63 291-353 210-272 (537)
187 3ieg_A DNAJ homolog subfamily 96.5 0.043 1.5E-06 50.5 13.8 126 233-378 190-320 (359)
188 2q7f_A YRRB protein; TPR, prot 96.5 0.037 1.3E-06 48.1 12.7 116 232-378 58-173 (243)
189 3cv0_A Peroxisome targeting si 96.5 0.023 7.9E-07 51.8 11.7 124 232-380 173-302 (327)
190 3ieg_A DNAJ homolog subfamily 96.4 0.038 1.3E-06 50.8 13.0 134 190-352 10-148 (359)
191 3fp2_A TPR repeat-containing p 96.4 0.026 8.8E-07 55.7 12.5 83 277-379 311-393 (537)
192 2xcb_A PCRH, regulatory protei 96.4 0.024 8.3E-07 45.8 10.2 87 273-379 15-101 (142)
193 2y4t_A DNAJ homolog subfamily 96.4 0.057 1.9E-06 51.9 14.5 152 187-376 30-189 (450)
194 2fo7_A Synthetic consensus TPR 96.4 0.055 1.9E-06 41.6 11.9 109 236-375 6-114 (136)
195 2vyi_A SGTA protein; chaperone 96.4 0.055 1.9E-06 41.6 11.9 88 272-379 8-95 (131)
196 1xnf_A Lipoprotein NLPI; TPR, 96.4 0.029 9.9E-07 49.8 11.5 64 275-352 42-105 (275)
197 1hxi_A PEX5, peroxisome target 96.3 0.029 9.9E-07 44.3 10.1 81 280-380 21-101 (121)
198 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.014 4.6E-07 57.8 9.9 103 272-380 264-367 (457)
199 3vtx_A MAMA; tetratricopeptide 96.3 0.042 1.4E-06 46.0 11.8 124 233-380 7-157 (184)
200 1a17_A Serine/threonine protei 96.3 0.042 1.4E-06 44.6 11.4 86 274-379 11-96 (166)
201 1elw_A TPR1-domain of HOP; HOP 96.3 0.034 1.2E-06 42.0 10.1 83 277-379 5-87 (118)
202 1xnf_A Lipoprotein NLPI; TPR, 96.3 0.025 8.4E-07 50.3 10.6 100 229-353 41-140 (275)
203 3as5_A MAMA; tetratricopeptide 96.3 0.026 8.9E-07 46.4 10.1 124 192-354 51-174 (186)
204 3u4t_A TPR repeat-containing p 96.3 0.025 8.4E-07 50.4 10.6 118 234-379 6-123 (272)
205 3mkr_A Coatomer subunit epsilo 96.3 0.088 3E-06 48.4 14.6 72 289-380 179-250 (291)
206 1elr_A TPR2A-domain of HOP; HO 96.3 0.031 1.1E-06 43.1 10.0 89 276-378 4-93 (131)
207 2dba_A Smooth muscle cell asso 96.3 0.025 8.5E-07 45.1 9.6 87 276-379 28-114 (148)
208 2kat_A Uncharacterized protein 96.2 0.046 1.6E-06 42.1 10.7 85 277-379 20-104 (115)
209 2if4_A ATFKBP42; FKBP-like, al 96.2 0.014 4.8E-07 55.2 8.8 126 228-373 176-307 (338)
210 3qky_A Outer membrane assembly 96.2 0.048 1.6E-06 48.7 11.8 169 190-383 59-251 (261)
211 1ouv_A Conserved hypothetical 96.2 0.04 1.4E-06 49.5 11.3 84 192-304 15-106 (273)
212 2lni_A Stress-induced-phosphop 96.2 0.024 8.1E-07 44.2 8.7 86 274-379 14-99 (133)
213 2xev_A YBGF; tetratricopeptide 96.1 0.029 9.9E-07 43.8 9.2 100 236-354 7-106 (129)
214 1hh8_A P67PHOX, NCF-2, neutrop 96.1 0.014 4.7E-07 50.2 7.7 134 192-353 15-150 (213)
215 2c2l_A CHIP, carboxy terminus 96.1 0.019 6.6E-07 52.6 9.0 82 277-378 5-86 (281)
216 3qou_A Protein YBBN; thioredox 96.1 0.057 2E-06 49.5 12.2 123 233-379 119-270 (287)
217 2fo7_A Synthetic consensus TPR 96.1 0.051 1.8E-06 41.8 10.3 122 193-353 11-132 (136)
218 1ouv_A Conserved hypothetical 96.0 0.034 1.2E-06 49.9 10.2 62 231-305 6-71 (273)
219 1na0_A Designed protein CTPR3; 95.9 0.095 3.3E-06 39.8 11.1 83 276-378 9-91 (125)
220 2kck_A TPR repeat; tetratricop 95.9 0.022 7.6E-07 42.7 7.2 80 278-377 8-89 (112)
221 1hxi_A PEX5, peroxisome target 95.8 0.013 4.3E-07 46.5 5.6 92 237-353 23-114 (121)
222 3k9i_A BH0479 protein; putativ 95.8 0.018 6.2E-07 44.9 6.5 74 289-379 3-76 (117)
223 2kck_A TPR repeat; tetratricop 95.7 0.021 7.1E-07 42.9 6.3 96 234-352 9-105 (112)
224 2kc7_A BFR218_protein; tetratr 95.7 0.092 3.1E-06 38.9 9.8 77 281-377 5-84 (99)
225 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0035 1.2E-07 48.6 1.6 34 88-121 2-38 (101)
226 2vsy_A XCC0866; transferase, g 95.6 0.043 1.5E-06 55.4 9.9 126 190-354 30-158 (568)
227 2e2e_A Formate-dependent nitri 95.3 0.44 1.5E-05 39.3 13.7 97 232-353 45-144 (177)
228 2yhc_A BAMD, UPF0169 lipoprote 95.2 0.27 9.1E-06 42.9 12.7 163 189-380 10-200 (225)
229 2r5s_A Uncharacterized protein 95.2 0.11 3.8E-06 43.4 9.7 66 277-354 109-174 (176)
230 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0046 1.6E-07 58.2 1.0 45 88-132 307-373 (381)
231 2gw1_A Mitochondrial precursor 95.2 0.13 4.3E-06 50.1 11.5 86 278-377 374-462 (514)
232 2if4_A ATFKBP42; FKBP-like, al 95.2 0.056 1.9E-06 51.0 8.6 99 274-380 177-280 (338)
233 2xev_A YBGF; tetratricopeptide 95.2 0.085 2.9E-06 41.0 8.4 84 279-379 5-91 (129)
234 2pzi_A Probable serine/threoni 95.1 0.027 9.3E-07 58.7 6.5 125 233-376 435-580 (681)
235 1wao_1 Serine/threonine protei 95.0 0.015 5.2E-07 57.9 4.2 82 278-379 8-89 (477)
236 1zu2_A Mitochondrial import re 95.0 0.13 4.5E-06 43.2 9.2 77 296-379 15-95 (158)
237 2e2e_A Formate-dependent nitri 94.9 0.18 6E-06 41.8 10.1 105 244-379 23-130 (177)
238 1zu2_A Mitochondrial import re 94.7 0.43 1.5E-05 40.0 11.7 88 277-371 37-132 (158)
239 2gw1_A Mitochondrial precursor 94.7 0.26 8.8E-06 47.9 12.1 82 276-378 6-87 (514)
240 1vyx_A ORF K3, K3RING; zinc-bi 94.5 0.021 7.2E-07 39.8 2.7 43 88-131 5-58 (60)
241 2pzi_A Probable serine/threoni 94.4 0.29 1E-05 50.8 12.4 84 277-380 434-517 (681)
242 3qou_A Protein YBBN; thioredox 94.0 0.26 9E-06 44.9 10.0 88 278-379 119-234 (287)
243 2r5s_A Uncharacterized protein 93.9 0.33 1.1E-05 40.4 9.7 92 276-380 40-160 (176)
244 3mkr_A Coatomer subunit epsilo 93.5 0.16 5.4E-06 46.7 7.5 112 234-379 104-215 (291)
245 2yhc_A BAMD, UPF0169 lipoprote 91.6 0.8 2.7E-05 39.7 9.1 64 277-351 148-211 (225)
246 2kat_A Uncharacterized protein 91.5 0.67 2.3E-05 35.2 7.6 50 324-379 19-68 (115)
247 2l6j_A TPR repeat-containing p 90.7 0.71 2.4E-05 34.3 6.9 51 324-380 4-54 (111)
248 3rjv_A Putative SEL1 repeat pr 90.3 0.61 2.1E-05 40.2 7.1 47 322-375 123-173 (212)
249 3ma5_A Tetratricopeptide repea 90.3 0.47 1.6E-05 35.5 5.5 66 232-308 8-73 (100)
250 3rjv_A Putative SEL1 repeat pr 89.5 1.4 4.9E-05 37.8 8.8 28 277-304 19-46 (212)
251 1klx_A Cysteine rich protein B 89.4 1.6 5.5E-05 34.9 8.4 88 237-353 31-126 (138)
252 3m62_A Ubiquitin conjugation f 89.0 0.28 9.4E-06 52.4 4.2 64 88-152 890-960 (968)
253 2csv_A Tripartite motif protei 89.0 0.016 5.4E-07 41.9 -3.7 41 226-266 20-69 (72)
254 2xm6_A Protein corresponding t 88.9 2.2 7.6E-05 41.7 10.7 26 326-351 185-214 (490)
255 1na3_A Designed protein CTPR2; 87.8 2.1 7.1E-05 30.3 7.4 51 323-379 8-58 (91)
256 3nw0_A Non-structural maintena 87.7 0.24 8.3E-06 44.5 2.5 43 89-131 180-228 (238)
257 3bee_A Putative YFRE protein; 86.1 5 0.00017 29.8 8.9 78 278-372 8-88 (93)
258 2xm6_A Protein corresponding t 84.9 5.4 0.00018 38.8 10.9 27 278-304 77-107 (490)
259 1xi4_A Clathrin heavy chain; a 84.8 2.5 8.7E-05 47.4 8.9 97 239-354 1057-1164(1630)
260 3ffl_A Anaphase-promoting comp 83.5 18 0.00061 30.3 11.8 88 288-380 32-138 (167)
261 2ond_A Cleavage stimulation fa 83.2 3.9 0.00013 37.1 8.5 28 325-352 204-231 (308)
262 3i2d_A E3 SUMO-protein ligase 82.6 0.71 2.4E-05 43.9 3.1 58 89-146 249-316 (371)
263 2w2u_A Hypothetical P60 katani 82.2 9.8 0.00033 27.9 8.6 37 321-357 16-52 (83)
264 3ffl_A Anaphase-promoting comp 81.9 6.2 0.00021 33.1 8.3 78 273-357 60-148 (167)
265 2v5f_A Prolyl 4-hydroxylase su 81.6 6.2 0.00021 29.6 7.8 66 236-305 10-75 (104)
266 2ond_A Cleavage stimulation fa 81.4 30 0.001 31.0 14.8 47 293-352 81-127 (308)
267 2v6y_A AAA family ATPase, P60 80.3 14 0.00048 27.0 8.9 36 322-357 9-44 (83)
268 4fo9_A E3 SUMO-protein ligase 79.6 1 3.5E-05 42.7 3.1 57 89-145 215-281 (360)
269 4f3v_A ESX-1 secretion system 79.4 10 0.00034 34.7 9.7 127 190-353 109-237 (282)
270 2rpa_A Katanin P60 ATPase-cont 78.5 7.5 0.00026 28.2 6.8 45 329-373 17-61 (78)
271 1wfd_A Hypothetical protein 15 77.4 12 0.0004 28.1 7.9 37 321-357 12-48 (93)
272 2kc7_A BFR218_protein; tetratr 76.8 6.3 0.00022 28.4 6.4 45 329-379 5-50 (99)
273 4f3v_A ESX-1 secretion system 76.8 12 0.00043 34.1 9.5 85 278-378 137-222 (282)
274 1b89_A Protein (clathrin heavy 76.2 2.1 7E-05 42.1 4.2 97 233-351 124-234 (449)
275 2cpt_A SKD1 protein, vacuolar 75.4 17 0.00058 28.5 8.6 38 320-357 14-51 (117)
276 2o8p_A 14-3-3 domain containin 75.1 40 0.0014 29.7 11.7 86 290-380 139-224 (227)
277 1klx_A Cysteine rich protein B 74.1 6 0.0002 31.4 5.9 71 282-376 31-105 (138)
278 4a5x_A MITD1, MIT domain-conta 72.1 16 0.00055 26.9 7.3 35 323-357 15-49 (86)
279 2v6x_A Vacuolar protein sortin 71.9 16 0.00056 26.6 7.4 38 320-357 9-46 (85)
280 3ly7_A Transcriptional activat 68.7 22 0.00076 33.8 9.3 61 278-353 279-339 (372)
281 1pc2_A Mitochondria fission pr 68.1 13 0.00043 30.7 6.6 43 323-371 70-112 (152)
282 2ko5_A Ring finger protein Z; 65.0 14 0.00049 27.7 5.6 43 87-132 26-73 (99)
283 2dja_A Midline-2; tripartite m 63.2 0.015 5E-07 43.4 -11.3 46 226-271 20-76 (84)
284 3txn_A 26S proteasome regulato 63.1 74 0.0025 30.4 12.0 77 278-362 101-177 (394)
285 2d8u_A Ubiquitin ligase TRIM63 62.9 0.03 1E-06 39.4 -9.1 40 226-265 10-60 (64)
286 1xi4_A Clathrin heavy chain; a 62.0 37 0.0013 38.4 10.5 29 324-352 1221-1249(1630)
287 3e4b_A ALGK; tetratricopeptide 61.8 20 0.00069 34.5 7.9 28 277-304 249-279 (452)
288 2jne_A Hypothetical protein YF 61.0 1.4 4.9E-05 33.2 -0.5 39 90-133 33-74 (101)
289 2cs3_A Protein C14ORF4, MY039 58.0 7.1 0.00024 28.3 2.8 32 88-120 14-49 (93)
290 2yvr_A Transcription intermedi 57.5 0.16 5.5E-06 33.5 -5.7 32 226-257 8-49 (50)
291 2did_A Tripartite motif protei 57.2 0.11 3.8E-06 34.9 -6.7 31 226-256 10-50 (53)
292 2ooe_A Cleavage stimulation fa 56.0 1E+02 0.0035 29.8 12.1 61 234-304 324-384 (530)
293 2ffw_A Midline-1; B-BOX, ring 55.7 2.6 9E-05 30.6 0.2 31 172-218 29-66 (78)
294 1b89_A Protein (clathrin heavy 54.5 6.4 0.00022 38.6 2.8 54 278-353 124-177 (449)
295 3e4b_A ALGK; tetratricopeptide 54.1 87 0.003 29.9 11.0 90 278-375 178-294 (452)
296 3txn_A 26S proteasome regulato 52.3 1.1E+02 0.0039 29.1 11.2 106 237-355 105-212 (394)
297 2ooe_A Cleavage stimulation fa 52.0 26 0.00089 34.2 6.9 28 278-305 323-350 (530)
298 3mv2_B Coatomer subunit epsilo 50.6 42 0.0014 31.0 7.6 91 278-386 102-196 (310)
299 2cup_A Skeletal muscle LIM-pro 49.8 10 0.00036 28.3 2.8 43 89-131 33-77 (101)
300 1z60_A TFIIH basal transcripti 49.8 12 0.0004 25.6 2.7 36 91-126 17-58 (59)
301 2yrg_A Tripartite motif-contai 48.9 0.17 5.9E-06 34.8 -6.9 30 226-255 16-55 (59)
302 3u64_A Protein TP_0956; tetrat 48.1 42 0.0014 30.8 7.0 132 231-382 152-300 (301)
303 2jmo_A Parkin; IBR, E3 ligase, 46.3 6.2 0.00021 28.7 0.9 21 107-128 55-75 (80)
304 1fre_A Nuclear factor XNF7; zi 46.2 0.37 1.3E-05 30.4 -5.1 27 226-252 5-41 (42)
305 3mkq_A Coatomer beta'-subunit; 43.4 2.6E+02 0.0089 28.2 13.3 25 278-302 683-707 (814)
306 1deq_A Fibrinogen (alpha chain 43.2 63 0.0021 30.5 7.4 32 273-304 88-119 (390)
307 2xqn_T Testin, TESS; metal-bin 42.8 10 0.00035 29.7 1.8 43 89-131 30-74 (126)
308 2lbm_A Transcriptional regulat 42.5 28 0.00094 28.3 4.4 39 89-128 63-116 (142)
309 2jrp_A Putative cytoplasmic pr 41.6 4.4 0.00015 29.7 -0.5 38 90-132 3-43 (81)
310 1wd2_A Ariadne-1 protein homol 41.5 8 0.00027 26.5 0.8 32 90-121 7-45 (60)
311 2lri_C Autoimmune regulator; Z 40.8 41 0.0014 23.3 4.5 39 91-130 14-60 (66)
312 1vh6_A Flagellar protein FLIS; 39.7 64 0.0022 26.1 6.2 48 331-379 40-89 (145)
313 3iqc_A FLIS, flagellar protein 39.4 1.4E+02 0.0048 23.6 8.3 47 334-380 46-95 (131)
314 2d8v_A Zinc finger FYVE domain 39.1 7.5 0.00026 27.1 0.4 29 90-120 9-38 (67)
315 2ct7_A Ring finger protein 31; 39.0 6.4 0.00022 29.0 0.0 30 91-120 27-61 (86)
316 1orj_A Flagellar protein FLIS; 37.4 1.2E+02 0.0042 23.9 7.5 46 336-381 41-93 (130)
317 2egm_A Tripartite motif-contai 36.3 0.58 2E-05 31.9 -5.8 27 226-252 20-56 (57)
318 2gmg_A Hypothetical protein PF 35.8 10 0.00036 29.1 0.7 26 100-129 65-93 (105)
319 1ya0_A SMG-7 transcript varian 32.4 1.5E+02 0.0052 29.1 8.8 66 272-351 148-213 (497)
320 1wil_A KIAA1045 protein; ring 32.0 37 0.0013 24.9 3.1 29 89-119 15-46 (89)
321 1z2q_A LM5-1; membrane protein 31.8 36 0.0012 24.7 3.1 31 89-119 21-54 (84)
322 2l5u_A Chromodomain-helicase-D 30.9 41 0.0014 22.7 3.1 39 89-128 11-57 (61)
323 4ayb_P DNA-directed RNA polyme 30.8 13 0.00046 24.0 0.5 27 104-130 5-33 (48)
324 1joc_A EEA1, early endosomal a 30.1 19 0.00064 28.6 1.4 30 90-119 70-102 (125)
325 3mjh_B Early endosome antigen 29.6 10 0.00035 22.8 -0.2 11 90-100 6-16 (34)
326 3mkq_A Coatomer beta'-subunit; 28.9 4E+02 0.014 26.8 11.8 25 233-257 683-707 (814)
327 3ghg_A Fibrinogen alpha chain; 27.0 20 0.00068 35.3 1.2 15 343-357 174-188 (562)
328 2a9u_A Ubiquitin carboxyl-term 26.9 1.1E+02 0.0036 24.8 5.4 44 321-364 39-82 (144)
329 1zbd_B Rabphilin-3A; G protein 26.5 16 0.00055 29.4 0.4 41 88-128 54-106 (134)
330 1o9d_A 14-3-3-like protein C; 26.4 3.5E+02 0.012 24.1 10.4 77 292-373 151-233 (260)
331 3dra_A Protein farnesyltransfe 25.8 3.7E+02 0.013 24.2 10.3 75 278-352 182-286 (306)
332 1x4l_A Skeletal muscle LIM-pro 25.5 40 0.0014 23.1 2.4 32 89-120 35-66 (72)
333 3ddt_A E3 ubiquitin-protein li 25.3 1.5 5.3E-05 28.4 -4.9 28 226-253 8-46 (48)
334 3u64_A Protein TP_0956; tetrat 25.3 2E+02 0.0067 26.3 7.5 32 324-355 199-235 (301)
335 3t7l_A Zinc finger FYVE domain 25.1 25 0.00087 26.0 1.3 31 89-119 20-53 (90)
336 3bee_A Putative YFRE protein; 24.7 79 0.0027 22.9 4.0 28 277-304 44-71 (93)
337 1nzn_A CGI-135 protein, fissio 24.6 2.2E+02 0.0074 22.4 6.8 41 323-369 73-113 (126)
338 1x4u_A Zinc finger, FYVE domai 24.4 54 0.0018 23.7 3.0 29 90-118 15-46 (84)
339 3iqu_A 14-3-3 protein sigma; s 24.2 2.1E+02 0.0073 25.1 7.3 56 292-352 149-204 (236)
340 2zet_C Melanophilin; complex, 23.9 28 0.00095 28.6 1.4 42 88-129 67-117 (153)
341 1vfy_A Phosphatidylinositol-3- 23.3 31 0.0011 24.3 1.4 28 91-118 13-43 (73)
342 4b4t_R RPN7, 26S proteasome re 23.1 1.5E+02 0.0053 28.2 6.9 67 278-355 133-199 (429)
343 2yw8_A RUN and FYVE domain-con 22.9 33 0.0011 24.8 1.5 30 90-119 20-52 (82)
344 2d8x_A Protein pinch; LIM doma 22.4 30 0.001 23.6 1.2 29 90-118 32-60 (70)
345 1y8m_A FIS1; mitochondria, unk 22.2 2.7E+02 0.0093 22.4 7.0 61 301-373 60-120 (144)
346 1wfl_A Zinc finger protein 216 22.1 1.4E+02 0.0047 21.3 4.5 27 89-115 25-51 (74)
347 4g9i_A Hydrogenase maturation 21.9 30 0.001 36.3 1.4 44 88-131 105-189 (772)
348 2xze_A STAM-binding protein; h 21.8 1.4E+02 0.0048 24.1 5.3 43 321-363 37-80 (146)
349 2o35_A Hypothetical protein DU 21.8 18 0.00063 27.3 -0.1 11 111-121 42-52 (105)
350 3ttc_A HYPF, transcriptional r 21.7 24 0.00081 36.3 0.7 36 113-148 70-123 (657)
351 3fyb_A Protein of unknown func 21.7 19 0.00063 27.2 -0.1 11 111-121 41-51 (104)
352 2l5g_B Putative uncharacterize 21.6 64 0.0022 20.2 2.3 26 270-295 13-38 (42)
353 3vth_A Hydrogenase maturation 21.3 37 0.0013 35.6 2.0 44 88-131 110-194 (761)
354 1vp7_A Exodeoxyribonuclease VI 21.1 1.9E+02 0.0066 21.7 5.5 39 271-309 32-70 (100)
355 3bu8_A Telomeric repeat-bindin 21.0 3.4E+02 0.012 23.6 7.6 29 320-348 108-138 (235)
356 1y02_A CARP2, FYVE-ring finger 21.0 34 0.0012 26.9 1.3 31 90-120 20-53 (120)
357 1mm2_A MI2-beta; PHD, zinc fin 20.8 65 0.0022 21.7 2.6 40 89-129 9-56 (61)
358 1wfp_A Zinc finger (AN1-like) 20.1 1.9E+02 0.0065 20.5 4.9 29 88-116 24-52 (74)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=101.98 Aligned_cols=62 Identities=27% Similarity=0.676 Sum_probs=55.1
Q ss_pred CceeccccccccccCceecc-ccCcchHHhHhcCC------CCCCCCccccc---chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK---IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~~---~~~n~~l~~lv~~~~~~~ 150 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.||..+.. +.+|..+.++++.+....
T Consensus 12 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 12 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp TTTEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred cCCCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 5789999999988 999999 99999999999884 69999998742 899999999999998643
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=1.2e-12 Score=98.50 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=54.7
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||+.||..|+ .||.||..+.. +.+|..|.++++.+...
T Consensus 7 ~~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 7 EYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp SSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred ccCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 5788999999988 99999999999999999883 39999999875 88999999999999753
No 3
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.4e-12 Score=104.90 Aligned_cols=63 Identities=22% Similarity=0.570 Sum_probs=55.7
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC--CCCCCCccccc--chhhHHHHHHHHHHHhhch
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK--DCPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~--~CP~C~~~~~~--~~~n~~l~~lv~~~~~~~~ 151 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.++++.+.....
T Consensus 21 ~~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 4789999999988 89998 999999999999996 49999999865 8999999999998876443
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=1.6e-11 Score=96.53 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=57.0
Q ss_pred CceeccccccccccCceecccc-CcchHHhHhcCCC----CCCCCccccc--chhhHHHHHHHHHHHhhch
Q 016307 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~lv~~~~~~~~ 151 (392)
++|.||||++++. +||+++|| |+||+.||..|+. ||.|+.++.. +.+|..|+++++.+.....
T Consensus 21 ~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred HhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 4688999999988 99999999 9999999999974 9999999876 8999999999999986543
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=3.2e-12 Score=97.93 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=56.2
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~~ 150 (392)
+++.||||++++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..|+++++.+....
T Consensus 13 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 13 DEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hheECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 4688999999988 99999999999999999995 59999998876 899999999999997643
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.22 E-value=4.7e-12 Score=99.95 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=56.1
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCCC----CCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
+++.||||++++. +|++++|||+||+.||..|+. ||.|+.++.. +.+|..|+++++.+...
T Consensus 28 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 28 DEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp TTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred HhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 5788999999988 999999999999999999974 9999999876 99999999999999864
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.17 E-value=6.4e-12 Score=103.38 Aligned_cols=61 Identities=33% Similarity=0.805 Sum_probs=54.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc---chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~lv~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+..+
T Consensus 51 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred cCCCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4688999999988 99999999999999999884 69999999976 89999999999988753
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.8e-11 Score=102.69 Aligned_cols=59 Identities=25% Similarity=0.796 Sum_probs=49.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCcccccchhhHHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~lv~~~~ 147 (392)
+++.|+||++.+. +|++++|||+||..||..|+ .||.||.++.....+..+..++..+.
T Consensus 52 ~~~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred ccCCCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3578999999988 99999999999999999985 49999999987555666666665554
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=96.51 Aligned_cols=63 Identities=27% Similarity=0.654 Sum_probs=55.6
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHHhhch
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~~~ 151 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.++++.+.....
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 21 DLLRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 4689999999988 88887 899999999999984 59999999886 8999999999999986543
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=96.43 Aligned_cols=61 Identities=25% Similarity=0.551 Sum_probs=53.1
Q ss_pred CceeccccccccccCcee-ccccCcchHHhHhcC-----CCCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRF-----KDCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
+.+.|+||++++. +|+. ++|||+||..||..| ..||.||..+.. +..|..+.++++.+...
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4789999999988 8888 999999999999998 359999999876 77888888888877653
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-11 Score=93.12 Aligned_cols=52 Identities=33% Similarity=0.761 Sum_probs=44.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----------CCCCCCccccc--chhhHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +.+|..|.
T Consensus 11 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 11 EEVTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred cCCCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 5789999999988 89999999999999999873 39999998865 66666543
No 12
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=93.39 Aligned_cols=62 Identities=23% Similarity=0.458 Sum_probs=53.8
Q ss_pred CceeccccccccccCceecc-ccCcchHHhHhcCC----------CCCC--CCcc-ccc--chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-IEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~----------~CP~--C~~~-~~~--~~~n~~l~~lv~~~~~~~ 150 (392)
..|.||||++++. +||+++ |||+||+.||..|+ .||. |+.. +.. +.+|..|.+++..++...
T Consensus 6 ~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 6 SGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp SCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred cEeECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 4688999999988 999996 99999999999884 5999 9865 443 999999999999998643
No 13
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=101.60 Aligned_cols=60 Identities=32% Similarity=0.733 Sum_probs=54.1
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc---chhhHHHHHHHHHHHh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~lv~~~~~ 148 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+..
T Consensus 77 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred cCCEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4688999999988 99999999999999999883 59999999885 7999999999998864
No 14
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.06 E-value=5.3e-11 Score=95.36 Aligned_cols=60 Identities=35% Similarity=0.871 Sum_probs=52.8
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC----CCCCCCccccc------chhhHHHHHHHHHHHh
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK------IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~------~~~n~~l~~lv~~~~~ 148 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.++++.+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GGTBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CcCCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 4789999999988 88887 999999999999984 59999998873 6789999999998864
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=88.37 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=42.9
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc-chhhHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTT 138 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~ 138 (392)
..+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +.+|..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 68 (81)
T 2csy_A 14 IPFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE 68 (81)
T ss_dssp CCSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHH
T ss_pred CCCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHH
Confidence 4578999999988 89999999999999999984 49999999875 666643
No 16
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=94.52 Aligned_cols=60 Identities=23% Similarity=0.610 Sum_probs=51.9
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc---------chhhHHHHHHHHHHHh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---------IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---------~~~n~~l~~lv~~~~~ 148 (392)
+++.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.+++..+..
T Consensus 14 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 14 SECQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp HHHBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 5789999999988 89999999999999999995 49999998763 5678888888887753
No 17
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.04 E-value=2.3e-09 Score=108.25 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=112.1
Q ss_pred hhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016307 241 CRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV 320 (392)
Q Consensus 241 ~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~ 320 (392)
...++++.+|..+++.+++...++-+ .-+..+..++++|+.++..+|++++|+.+|+++|++++..+.....
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg---~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----- 390 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFA---DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA----- 390 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBC---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-----
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-----
Confidence 34678889999999988777665433 2245677899999999999999999999999999999998876654
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+++.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.+++++...+..++.
T Consensus 391 -~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 391 -QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999998 8999999999888887765554
No 18
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.99 E-value=3.8e-09 Score=105.07 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=102.1
Q ss_pred cCCchhhhcHHHHHHHHHHh-CCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhH
Q 016307 244 MGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~-L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~d 322 (392)
.+++.+|+.+++++++...+ |++. +..+..++++|+.++..+|++++|+.+|+++|++++..+..... +
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~----Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDS----NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------N 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------H
T ss_pred ccCHHHHHHHHHHHHHHhhCccChh----chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------H
Confidence 35667888888888776655 4433 45677899999999999999999999999999999998876654 8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHH
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVR 371 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~ 371 (392)
++.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.+.++|.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999998 88888888887765
No 19
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.6e-10 Score=81.04 Aligned_cols=44 Identities=36% Similarity=0.792 Sum_probs=39.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC-CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..|+..| ..||.||..+..
T Consensus 5 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccC-CeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 5688999999988 8999999999999999887 469999987654
No 20
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.97 E-value=1.8e-10 Score=99.90 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.4
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
..|.||||++++. +||+++|||+||+.||..|+ .||.|+.++.. +.+|..|++++..+...
T Consensus 105 ~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 105 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred HhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 5789999999988 99999999999999999984 39999999876 99999999999999754
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=3e-10 Score=106.19 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.3
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
..+.||||++++. +||+++|||+||+.||..|+ .||.|+.++.. +.+|..|.++++.+...
T Consensus 207 ~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 207 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp STTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 4688999999988 99999999999999999884 39999999886 89999999999999853
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6e-10 Score=82.39 Aligned_cols=44 Identities=32% Similarity=0.831 Sum_probs=39.2
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-------CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+..
T Consensus 19 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4688999999988 89999999999999999986 49999987653
No 23
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.94 E-value=2.7e-10 Score=98.40 Aligned_cols=60 Identities=25% Similarity=0.657 Sum_probs=52.0
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC-----CCCCCCccccc---chhhHHHHHHHHHHHh
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~lv~~~~~ 148 (392)
..+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.+++..+..
T Consensus 53 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4689999999988 78877 999999999999983 49999998854 8899999999988854
No 24
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=1.2e-10 Score=93.80 Aligned_cols=60 Identities=33% Similarity=0.805 Sum_probs=50.2
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC-------CCCCCCccccc--chhhHHHHHHHHHHHhh
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~--~~~n~~l~~lv~~~~~~ 149 (392)
.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +..|..+.++++.+...
T Consensus 21 ~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 21 ILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 578999999988 89999999999999999883 59999998876 66677667777766543
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.3e-10 Score=91.53 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=48.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+.+++..+
T Consensus 17 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 5789999999988 89999999999999999983 69999998877 55677666665543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=1.7e-10 Score=87.90 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=43.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----------CCCCCCCccccc--chhhHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. .|++++|+|+||..||..| ..||.||..+.. +.+|..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 18 EEVTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTTSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred cCCCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 4678999999988 8999999999999999876 359999998875 55555443
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.2e-10 Score=81.35 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=39.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|+|.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4678999999988 89999999999999999984 49999997654
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.91 E-value=5.1e-10 Score=83.18 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=38.3
Q ss_pred CceeccccccccccCceecc-ccCcchHHhHhcCC------CCCCCCcccc
Q 016307 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5688999999988 899999 99999999999983 5999998644
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.9e-10 Score=87.60 Aligned_cols=51 Identities=27% Similarity=0.749 Sum_probs=42.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----------CCCCCCCccccc--chhhHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTL 139 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l 139 (392)
+.+.|+||++.+. +|+.++|||+||..||..| ..||.||..+.. +.+|..+
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 18 EEVTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred CCCCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 4678999999988 8999999999999999886 359999998875 5555544
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.3e-10 Score=79.79 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=39.0
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||+||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5689999999988 89999999999999999884 49999987653
No 31
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.88 E-value=1.1e-08 Score=101.64 Aligned_cols=126 Identities=13% Similarity=-0.064 Sum_probs=103.9
Q ss_pred cCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH
Q 016307 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl 323 (392)
.+++.+|+.+++.+++...++ ...-+..+..++++|+.++..+|++++|+.+|+++|++++..+..... ++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~---lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~ 370 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSER---LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP------VR 370 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCC---CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH------HH
T ss_pred hccHHHHHHHHHHHHHhccCc---CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh------HH
Confidence 455555555555554333222 223455678899999999999999999999999999999998876554 88
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+.++++||.+|..+|++++|+.+|++|++|++.. ..||..+.++++|+.....|+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 889999999999998887765
No 32
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=80.71 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=38.7
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI-DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS-SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH-CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4688999999988 78876 999999999999984 59999998765
No 33
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.9e-09 Score=98.06 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=54.4
Q ss_pred CceeccccccccccCceec-cccCcchHHhHhcCC------CCCC--CCccccc--chhhHHHHHHHHHHHhhc
Q 016307 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK------DCPL--CGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~------~CP~--C~~~~~~--~~~n~~l~~lv~~~~~~~ 150 (392)
..+.||||+++|. +||+. .|||+||+.||..|| .||. |++.+.. +.+|..|.++++.+....
T Consensus 180 ~el~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 180 IELTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CCSBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred eeeECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 4789999999998 99985 999999999999986 3999 9998776 999999999999886543
No 34
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.86 E-value=7.1e-10 Score=82.42 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.6
Q ss_pred CceeccccccccccCceeccccCc-chHHhHhcCCCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +++.++|||. ||..|+..|..||.||..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 3678999999988 9999999999 999999999999999998775
No 35
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=3e-10 Score=95.36 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=42.5
Q ss_pred CCCCCCC---ccCceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccc
Q 016307 79 GYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 79 ~~~~~~~---~~~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
|++...+ ..+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+
T Consensus 18 g~~~~~~~~~l~~~~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 18 GFSKTLLGTKLEAKYLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp SBCGGGTGGGCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcchhhhhccCCcCcCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5555444 235799999999998 99999999999999999984 499999864
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.1e-10 Score=85.89 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=38.9
Q ss_pred CceeccccccccccC----ceeccccCcchHHhHhcC-------CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRF-------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. . |+.++|||+||..||..| ..||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5688999999988 6 999999999999999988 359999997754
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.1e-09 Score=79.23 Aligned_cols=44 Identities=25% Similarity=0.739 Sum_probs=37.4
Q ss_pred Cceecccccc-ccccCc----eeccccCcchHHhHhcC-----CCCCCCCccccc
Q 016307 88 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~-~~~~~p----~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+++.|+||++ ++. .| ++++|||+||..||..| ..||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 877 66 57899999999999988 359999998765
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=76.61 Aligned_cols=38 Identities=34% Similarity=0.903 Sum_probs=34.3
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-------CCCCC
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|
T Consensus 19 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5688999999988 89999999999999999884 49987
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.5e-09 Score=88.00 Aligned_cols=56 Identities=27% Similarity=0.635 Sum_probs=45.2
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc---chhhHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVD 144 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~lv~ 144 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. ..++..+.+++.
T Consensus 22 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred CCCCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 4688999999988 99999999999999999883 59999999876 344555544443
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=78.75 Aligned_cols=43 Identities=35% Similarity=0.794 Sum_probs=37.5
Q ss_pred CceeccccccccccCc-------eeccccCcchHHhHhcCC----CCCCCCcccc
Q 016307 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+.+.|+||++.+. .+ ++++|||.||..||..|. .||.||..+.
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHH-HHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCcccc-ccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4678999999987 55 899999999999999983 5999998765
No 41
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=1.6e-09 Score=81.60 Aligned_cols=43 Identities=30% Similarity=0.923 Sum_probs=40.2
Q ss_pred ceeccccccccccCceeccccCc-chHHhHhcCCCCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
...|+||++.+. +++.+||||. ||..|+..++.||.||..+..
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCEeEEeCcccC-cEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 568999999988 9999999999 999999999999999998876
No 42
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.75 E-value=1.7e-09 Score=79.39 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=38.5
Q ss_pred CceeccccccccccCc-------eeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| +.++|||.||..||..|. .||.||..+..
T Consensus 9 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHH-HHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhh-ccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4678999999987 65 899999999999999983 69999998764
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=6.2e-09 Score=73.13 Aligned_cols=38 Identities=39% Similarity=0.928 Sum_probs=33.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-------CCCCC
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4678999999988 89999999999999999982 49987
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=5.2e-09 Score=78.42 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=37.2
Q ss_pred Cceecccccccccc-Cceecc--ccCcchHHhHhcCC-----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFE-CSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~-~p~~~~--C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+++.||||++.+.. +++.++ |||+||..|+..+| .||.||+.+..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 57889999998752 456665 99999999998876 49999998765
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=4.7e-09 Score=78.03 Aligned_cols=45 Identities=24% Similarity=0.785 Sum_probs=37.8
Q ss_pred ccCceeccccccccccCc---eeccccCcchHHhHhcC----CCCCCCCcccc
Q 016307 86 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 86 ~~~~l~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
..+...|+||++.+. .+ +.++|+|.||..||..| ..||.||+.+.
T Consensus 20 ~~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 335678999999987 44 78899999999999998 35999998765
No 46
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.2e-09 Score=78.43 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.2
Q ss_pred CceeccccccccccCceeccccCc-chHHhHhcCCCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||. ||..|+.....||.||..+..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 3578999999988 9999999999 999999999999999998765
No 47
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=3.7e-09 Score=91.59 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=48.9
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC-----CCCCCCccccc--chhhHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~lv~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+.+++..+
T Consensus 17 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 5789999999998 89999999999999999983 69999998877 55666666666544
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.69 E-value=3.3e-09 Score=76.08 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=37.9
Q ss_pred CceeccccccccccCc-------eeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. .+ +.++|||.||..||..|. .||.||..+..
T Consensus 2 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHH-HHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhh-CccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4578999999987 55 889999999999999984 59999998764
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.68 E-value=5.1e-09 Score=76.22 Aligned_cols=45 Identities=36% Similarity=0.817 Sum_probs=38.4
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+.+.++.++|||.||..|+..| ..||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 346799999998844589999999999999988 459999998765
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.66 E-value=1.1e-08 Score=71.11 Aligned_cols=44 Identities=27% Similarity=0.754 Sum_probs=36.4
Q ss_pred Cceecccccccccc--Cceecc-ccCcchHHhHhcCC----CCCCCCcccc
Q 016307 88 GPLSCMICQALLFE--CSKCTP-CSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~--~p~~~~-C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+.+ .++.++ |+|.||..||..|. .||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45679999999873 167776 99999999999994 4999998764
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.65 E-value=8.1e-09 Score=71.73 Aligned_cols=43 Identities=26% Similarity=0.727 Sum_probs=36.9
Q ss_pred ceecccccccccc---CceeccccCcchHHhHhcC----CCCCCCCcccc
Q 016307 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
...|+||++.+.+ .++.++|+|.||..||..| ..||.||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4679999999863 3889999999999999998 46999998764
No 52
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=73.98 Aligned_cols=45 Identities=36% Similarity=0.905 Sum_probs=37.8
Q ss_pred Cceeccccccccc--cCceeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 88 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+. ..++.++|+|.||..||..| ..||.||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3567999999875 25788999999999999998 359999998765
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.64 E-value=1.2e-06 Score=79.08 Aligned_cols=169 Identities=17% Similarity=0.152 Sum_probs=126.5
Q ss_pred hhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHH
Q 016307 196 AQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL 275 (392)
Q Consensus 196 ~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i 275 (392)
.|++++|...+..+.+.....+.... +.....+..++.++...++...|+.+++.+.+...++.+.. ....
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~ 84 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDH------PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAV 84 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSS------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHH
Confidence 35566666666655555444332111 33455677788888889999999999998877766553211 2456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|++++++.+....... ...+..+.++|.++..+|++++|+..|++++.+.+
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999998877654332 25677889999999999999999999999999998
Q ss_pred Hh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 356 SL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 356 ~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.. ..+|.......+++.++..++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 87 4456667777778877766554
No 54
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.63 E-value=1.4e-08 Score=76.01 Aligned_cols=45 Identities=24% Similarity=0.734 Sum_probs=37.0
Q ss_pred Cceecccccccccc--CceeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFE--CSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..+.|+||++.+.+ ..+.++|+|.||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 45789999999873 23567999999999999983 59999998765
No 55
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=7.8e-09 Score=75.69 Aligned_cols=43 Identities=28% Similarity=0.822 Sum_probs=37.5
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. + +.++|+|.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRA-D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCC-S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCcc-C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4578999999988 5 999999999999999984 49999987664
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=78.75 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=37.0
Q ss_pred CceeccccccccccC---ceeccccCcchHHhHhcCC----CCCCCCcccc
Q 016307 88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+. . ++.++|+|.||..||..|+ .||.||..+.
T Consensus 39 ~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4678999999877 4 7789999999999999984 4999998764
No 57
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.1e-08 Score=72.14 Aligned_cols=44 Identities=27% Similarity=0.814 Sum_probs=40.1
Q ss_pred CceeccccccccccCceeccccCc-chHHhHhcCCCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+...|.||++... +++.+||||. ||..|+...+.||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-NWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC-CCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC-CEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 4567999999988 9999999999 999999999999999998776
No 58
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=5.6e-07 Score=90.78 Aligned_cols=145 Identities=9% Similarity=-0.005 Sum_probs=112.7
Q ss_pred HHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhH
Q 016307 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~ 273 (392)
..+|++++|...+..+.+.....+.. ..+.....+..++..+..+|++.+|..+++++.+...++-+. -+.
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~---~Hp 390 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFAD------TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH---NNA 390 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCT------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT---TCH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC---CCH
Confidence 35667777766655443332222211 234556678888889999999999999999997776554332 346
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.+...+++|+.++..+|++++|+..|++++++++..++.+.. +++..++.++.++..++.+++|...|..+.+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp------~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP------ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999998876654 67888899999999999999999999988543
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.54 E-value=3.8e-06 Score=80.85 Aligned_cols=171 Identities=11% Similarity=0.016 Sum_probs=133.4
Q ss_pred HHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCc
Q 016307 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~ 268 (392)
.++-.+..|++++|...+..+...... .+.. +..+..+..++.++...++...|+..++++.+.......
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~----~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF----VKDR----IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG----CCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh----CCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--
Confidence 455678889999998887644322111 1111 233557778888888899999999999999888877643
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016307 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
....+......+|.+...+|++++|+..|++++++.+... ....++..+.++|.++..+|++++|+..|+
T Consensus 179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2345678899999999999999999999999999876541 123567789999999999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 349 EAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 349 eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+++.+.+.....|.......+++.++..++.
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 9999988876557778888888888776654
No 60
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=5e-07 Score=89.72 Aligned_cols=106 Identities=11% Similarity=-0.048 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016307 269 LEIIHTLSVSLNKIGDLKYY--GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l~~~--~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
..++..+..+...+...... .|++++|+..|+++|++++..+..... +++.++++||.+|..+|++++|+.+
T Consensus 289 e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~ 362 (433)
T 3qww_A 289 EAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGALKY 362 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 34455555555556555533 489999999999999998887755543 8899999999999999999999999
Q ss_pred HHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHhc
Q 016307 347 FQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 347 ~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
|++++++.+++ ..||+.+..+++++.+|..++.+
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence 99999999998 99999999999999999877643
No 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.4e-08 Score=73.05 Aligned_cols=45 Identities=22% Similarity=0.602 Sum_probs=36.1
Q ss_pred CceeccccccccccC--ceeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
....|+||++.+.+. .++++|+|.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 356799999998722 3344999999999999983 59999998765
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.50 E-value=1.8e-08 Score=83.18 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=39.0
Q ss_pred CceeccccccccccCc-------eeccccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| ++++|||+||..||.+|+ .||.||..+..
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 5688999999988 66 999999999999999984 59999998765
No 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.49 E-value=2.9e-08 Score=79.97 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=35.8
Q ss_pred ceeccccccccccCce------------------eccccCcchHHhHhcCC---------CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~------------------~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
+..|+||++.|. .+. +++|+|.||..||..|. .||+||..+..
T Consensus 25 ~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 357999999986 433 78999999999999985 49999987654
No 64
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=6.6e-06 Score=77.14 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=107.5
Q ss_pred HHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhH
Q 016307 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~ 273 (392)
...|++++|...+..+.+..... .. . ......+..++.++...+++..|+..++++.+....+.. ..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~----~~-~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~ 113 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANN----RS-L---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----PD 113 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT----TC-H---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHc----CC-H---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 44678888877775443332211 00 0 122446667778888889999999999999888776654 23
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.....+.+++.++.. |++++|+..|++++++..... .....+..+.++|.++..+|++++|+..|++++.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788999999988 999999999999999876531 12245678899999999999999999999999999
Q ss_pred HHHhh
Q 016307 354 LESLT 358 (392)
Q Consensus 354 le~l~ 358 (392)
.....
T Consensus 185 ~~~~~ 189 (307)
T 2ifu_A 185 YKEME 189 (307)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 87653
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.44 E-value=1.2e-05 Score=73.66 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=133.1
Q ss_pred HHHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhC
Q 016307 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L 264 (392)
.+...+.-.+..|++++|...+..+........... -+.....+..++.++...++...|+.+++.+.+...++
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD------HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 344455557788999999998875554433322100 12334567778888888999999999999887766554
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHH
Q 016307 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 265 ~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~ 344 (392)
.... ..........++.+....|++++|+..|++++++.+....... ...+..+..+|.++..+|++++|+
T Consensus 103 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 103 LGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------PDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hCCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2211 2445678899999999999999999999999998776643332 256778899999999999999999
Q ss_pred HHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 345 DGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 345 ~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
..|++++.+.++. ..+|........++.++..++.
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 210 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999998877 4456666677777777766554
No 66
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.43 E-value=9.9e-06 Score=72.96 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=114.0
Q ss_pred hHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCC
Q 016307 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~ 267 (392)
..+.-.+..|++++|...+..+.......... .. +.....+..++.++...++...|+.+++.+.+...++...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGK--DH----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC--cc----hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 33444667888899888876554433222110 00 3335567778888888999999999999987776554332
Q ss_pred chhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016307 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
. ..........++.+....|++++|+..|++++++.+....... ...+..+..+|.++..+|++++|+..|
T Consensus 122 ~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 122 F---HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD------PNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp T---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred C---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 2345668899999999999999999999999998776543322 256778899999999999999999999
Q ss_pred HHHHHHHHH
Q 016307 348 QEAIKRLES 356 (392)
Q Consensus 348 ~eal~~le~ 356 (392)
++++++...
T Consensus 193 ~~~l~~~~~ 201 (283)
T 3edt_B 193 KEILTRAHE 201 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998655
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.43 E-value=7e-06 Score=79.02 Aligned_cols=172 Identities=13% Similarity=0.055 Sum_probs=130.6
Q ss_pred HhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
+-.++-.+..|++++|...+......... .+.. +..+..+..++.++...++...|+.+++.+.+.......
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~----~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPF----VSDD----IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGG----CCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhh----CCCh----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 34456678889999998887644332211 1111 334567778888888999999999999999888776543
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
....+......+|.+....|++++|+..|++++++.+.... ...++..+.++|.++..+|++++|+..
T Consensus 177 ----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 177 ----YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23357788999999999999999999999999998765321 125677899999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 347 FQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 347 ~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
|++++.+.+... +|.......+++.++..++.
T Consensus 245 ~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~ 276 (378)
T 3q15_A 245 FQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQ 276 (378)
T ss_dssp HHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCC
Confidence 999999987763 34456777778887766554
No 68
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=2e-05 Score=64.40 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=106.7
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...++...++.+++++.+....... ...+......++.+....|++++|+..|++++++.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 446667777777889999999999988777666543 345567889999999999999999999999999876542
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.....+..+.++|.++..+|++++|+..+++++.+.+.....+.......+++.++..++.
T Consensus 84 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 84 --------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 1224567788999999999999999999999999988775544555566667777666543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.36 E-value=1.1e-07 Score=91.33 Aligned_cols=44 Identities=25% Similarity=0.766 Sum_probs=40.9
Q ss_pred CceeccccccccccCceeccccCc-chHHhHhcCCCCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||. ||..|+..|..||.||..+..
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-ceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 4689999999988 9999999999 999999999999999998875
No 70
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=9.8e-06 Score=69.81 Aligned_cols=136 Identities=18% Similarity=0.103 Sum_probs=104.5
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...+++..+..+++++.+....+.. ..........++.+....|++++|+..|++++++.+...
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 446667788888889999999999999888777654 345667889999999999999999999999999876421
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
. .....+..+.++|.++..+|++++|+..|++++.+.+........+....+++.++..++
T Consensus 101 ~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 101 E-------DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred c-------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 1 112456778899999999999999999999999988766433333444555666655544
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=69.96 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=34.8
Q ss_pred CceeccccccccccC-------------ceec-cccCcchHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFEC-------------SKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~-------------p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
++..|+||++.|.+. ++.+ +|+|.|+..||.+|. .||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456688888887531 4455 499999999999994 49999987653
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=6.8e-08 Score=75.07 Aligned_cols=60 Identities=18% Similarity=0.621 Sum_probs=42.1
Q ss_pred CceeccccccccccCceec---cccCcchHHhHhcCC------------CCCC--CCcc--ccc-chhhHHHHHHHHHHH
Q 016307 88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~~------------~CP~--C~~~--~~~-~~~n~~l~~lv~~~~ 147 (392)
..+.|+||++.+. .+..+ +|||.||..||..++ .||. |+.. +.. ...+....+++++|.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 4578999999977 55543 799999999997762 3999 9988 554 222233345666665
Q ss_pred h
Q 016307 148 E 148 (392)
Q Consensus 148 ~ 148 (392)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 73
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.35 E-value=8.2e-08 Score=68.79 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=37.7
Q ss_pred ceeccccccccccCceec--cccCc-chHHhHhcCC----CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
...|+||++... +++.+ ||||. ||..|+..++ .||.||.++..
T Consensus 7 ~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 457999999977 77777 99998 9999999886 79999998865
No 74
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=2.7e-05 Score=74.28 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=126.6
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+..+....... +. -......+..++.++...+++..|+.+++.+.+....... .
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 263 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEF----GD----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----R 263 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H
T ss_pred HHHccCHHHHHHHHHHHHHHHHhc----CC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----c
Confidence 445667777766665333222211 00 0112335667778888899999999999998877776643 3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.........++.+....|++++|+..|++++++..... .....+..+..+|.++..+|++++|+..|+++++
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999876542 1235577888999999999999999999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
+.+.+...+........++.++..++...
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988666677778888999988888664
No 75
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=1e-05 Score=69.71 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=119.7
Q ss_pred HhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
...+.-.+..|++++|...+.......... +. -+.....+..++.++...+++..+..+++++.+.....+.
T Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKS----GD----HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----CC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 334444667888888888776554433221 11 1223456677888888899999999999999888777653
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
. ..........++.+....|++++|+..|++++++.+... .....+..+.++|.++..+|++++|+..
T Consensus 102 ~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~ 169 (203)
T 3gw4_A 102 D----PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------DQVAIACAFRGLGDLAQQEKNLLEAQQH 169 (203)
T ss_dssp C----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 2 224567889999999999999999999999998855432 1234567789999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHH
Q 016307 347 FQEAIKRLESLTLKPEEAGLEQRV 370 (392)
Q Consensus 347 ~~eal~~le~l~~~~~~~~l~~~l 370 (392)
|++++.+.+++......+.++.++
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~~ 193 (203)
T 3gw4_A 170 WLRARDIFAELEDSEAVNELMTRL 193 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcc
Confidence 999999998875433333344333
No 76
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.30 E-value=9.3e-08 Score=68.73 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=37.7
Q ss_pred CceeccccccccccCceec--cccCc-chHHhHhcCC----CCCCCCccccc
Q 016307 88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+...|+||++... +++.+ ||||. ||..|+..|+ .||.||..+..
T Consensus 7 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4567999999988 77876 99999 8999999885 49999998765
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.29 E-value=4e-05 Score=70.14 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=109.4
Q ss_pred HHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhh
Q 016307 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+..+........... -+.....+..++.++...+++..|..+++.+.+....+.+..
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 148 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKD------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD--- 148 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---
Confidence 35667888888887765443333221110 123345666778888888999999999998877665542211
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
..........++.+....|++++|+..|++++++.+....... ...+..+..+|.++..+|++++|+..|++++
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD------PNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2445678889999999999999999999999998766432222 2556778899999999999999999999999
Q ss_pred HHHHH
Q 016307 352 KRLES 356 (392)
Q Consensus 352 ~~le~ 356 (392)
.+...
T Consensus 223 ~~~~~ 227 (311)
T 3nf1_A 223 TRAHE 227 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 78
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.27 E-value=6.6e-05 Score=69.53 Aligned_cols=170 Identities=8% Similarity=-0.090 Sum_probs=121.6
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
....+..|++++|...+..... ........ .........++.++...++...|+.+++.+.+......
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~-------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---- 149 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELK-------KEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---- 149 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-------TCCCCHHH-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-------cccCChHH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----
Confidence 3456778888888887653221 11112211 11112233355666666788899888887765322211
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.. .....+.+.||.++..+|++++|+.+|++++++.+.... .....+..+.++|.++..+|++++|+.++++
T Consensus 150 ~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 150 DV-YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------NEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp CT-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 234557899999999999999999999999997655311 2336677899999999999999999999999
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 350 AIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 350 al~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
++++..........+.+..+++.++..++.
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 999998887777778889999999888873
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=2.5e-05 Score=72.63 Aligned_cols=128 Identities=11% Similarity=-0.060 Sum_probs=99.0
Q ss_pred hhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016307 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~ 317 (392)
+.++...+++..|+..++.+.+...+++. ........+++|.++..+|++++|+..|++++++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------- 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------- 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 34556788999999999999888777653 234567889999999999999999999999999876532
Q ss_pred cchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 318 SQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.....+..+.++|.++..+ |++++|+..|++++.+...............+++.++..++
T Consensus 112 -~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 2234577899999999996 99999999999999998754322223445666777665554
No 80
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=5.7e-05 Score=61.57 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=109.6
Q ss_pred HHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchh
Q 016307 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e 270 (392)
.-.+..|++++|...+..+......... . ......+..++.++...+++..+..+++.+.+.......
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~----~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGD----K----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTC----H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCC----c----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 3356678888888877655443332110 0 122346667788888899999999999999887776643
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
..........++.+....|++++|+..|++++++.+... .....+..+..+|.++..+|++++|+..|+++
T Consensus 85 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 85 -RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 234566788999999999999999999999999866532 12355777889999999999999999999999
Q ss_pred HHHHHH
Q 016307 351 IKRLES 356 (392)
Q Consensus 351 l~~le~ 356 (392)
+++.++
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 998764
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.25 E-value=1.3e-05 Score=74.59 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=102.6
Q ss_pred HhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHH
Q 016307 195 RAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHT 274 (392)
Q Consensus 195 ~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~ 274 (392)
..|++++|...+..+.+..... + +. ......+..++.++...+++.+|+..++.+.+....++. ...
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~----~-~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~~ 115 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKA----G-NE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FRR 115 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHT----T-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHh----C-CH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HHH
Confidence 4677777777765443322211 0 00 122446677888888899999999999999888777653 234
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 275 i~~~~~~l~~l~~~~-g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
....++++|.++... |++++|+..|++++++..... .....+..+.++|.++..+|++++|+..|++++.+
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566889999999996 999999999999999866421 11234567899999999999999999999988865
Q ss_pred H
Q 016307 354 L 354 (392)
Q Consensus 354 l 354 (392)
.
T Consensus 188 ~ 188 (292)
T 1qqe_A 188 S 188 (292)
T ss_dssp T
T ss_pred H
Confidence 4
No 82
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.24 E-value=1.3e-05 Score=75.08 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=114.7
Q ss_pred HHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhH
Q 016307 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~ 273 (392)
+..|++.+|...+..........+-...... ..-...+...+.++...+++..+...++.+.+...++.. ..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~ 73 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDY---DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----LF 73 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 4567777777766544433221000000011 111112233345666778999999999998888777753 33
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
......++++.+...+|++++|+..|++++++.+... .....+..+.++|.++.. |++++|+..|++++.+
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999865421 223567889999999999 9999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+.............+++.++..++.
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 88753323345566677776665543
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.23 E-value=3.2e-07 Score=88.65 Aligned_cols=43 Identities=30% Similarity=0.813 Sum_probs=38.4
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC-----CCCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
...|+||++.+. +|+.++|||.||..|+..| ..||.||..+..
T Consensus 332 ~~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 378999999987 9999999999999999887 359999998765
No 84
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.20 E-value=3e-07 Score=75.65 Aligned_cols=45 Identities=33% Similarity=0.771 Sum_probs=38.8
Q ss_pred cCceeccccccccccCc-------eeccccCcchHHhHhcC----CCCCCCCccccc
Q 016307 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
.+.+.|+||++.+. .+ +.++|||.||..||.+| ..||.||..+..
T Consensus 70 ~~~~~C~iC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHH-HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccc-cccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35688999999987 54 89999999999999998 469999998765
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.19 E-value=6.8e-05 Score=71.39 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=109.1
Q ss_pred HHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
....+..++.++...+++..|+.+++++.+....... ...+......++.+....|++++|+..|++++++....
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 3456777788888899999999999998877776543 34566788999999999999999999999999886653
Q ss_pred hhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
. .....+..+..+|.++..+|++++|+..|++++.+.......+........++.++..++.
T Consensus 261 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 261 K--------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred c--------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 1 1235577889999999999999999999999999988875555556666667776665543
No 86
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=7.4e-05 Score=71.82 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=107.6
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...+++..|+.+++++.+....... ...+......++.++...|++++|+..|++++++.....
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 446667788888899999999999988777666433 334566889999999999999999999999999876531
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.....+..+..+|.++..+|++++|+.+|++++.+.......+........++.++..++.
T Consensus 298 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 298 --------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 1234577788999999999999999999999999998885555556666667777666544
No 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.16 E-value=4.8e-05 Score=73.06 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=110.8
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
-+..|+++.|...+..+....... +. .-+.....+..+|.++...+++..|..+++.+.+....... .
T Consensus 153 ~~~~~~~~~A~~~~~~al~~~~~~----~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 220 (383)
T 3ulq_A 153 YYYMKQTYFSMDYARQAYEIYKEH----EA---YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-----P 220 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTC----ST---THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhC----cc---chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----h
Confidence 455677777777665443332221 11 01223456778888998999999999999999888777643 3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+..+..++|.+...+|++++|+..|++++++.+..... ...+.++.++|.++..+|++++|+..|++++.
T Consensus 221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999986653211 13477899999999999999999999999999
Q ss_pred HHHHh
Q 016307 353 RLESL 357 (392)
Q Consensus 353 ~le~l 357 (392)
+.+..
T Consensus 293 ~~~~~ 297 (383)
T 3ulq_A 293 YSQKA 297 (383)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98765
No 88
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=4.8e-05 Score=73.18 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=107.8
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+.......... .. -+.....+..++.++...+++..|+.+++++.+....+.. .
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 162 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSM----ND----RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-----R 162 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----H
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc----cC----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-----h
Confidence 455677777766665433322211 00 1333556777888888899999999999998877766543 3
Q ss_pred HHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGD-----------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDR 335 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~-----------------l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~ 335 (392)
.........++.++...|+ +++|+..|++++++.+.... ....+..+..+|.++.
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~ 234 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD--------RGAQGRACGNLGNTYY 234 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH
Confidence 4566788999999999999 88999999888887655421 1245566777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 336 ~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
.+|++++|+..|++++.+...............+++.++.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 7888888888888877777665332223334444444443
No 89
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=5.3e-06 Score=82.26 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+......+.+..+. .+|++++|+..|+++|++++..+.... .+++.++++|+.++..+|++++|+.++++++.
T Consensus 285 ~~~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 285 KEVQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455556666655 568999999999999987655543332 37899999999999999999999999999999
Q ss_pred HHHHh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 353 RLESL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 353 ~le~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+.+++ ..||..+..+.+++.+|..++.
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~ 386 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGM 386 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCC
Confidence 99998 9999999999999999988664
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.11 E-value=1.6e-05 Score=84.01 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.||.|.+.+.++|.++...+++.+|+..++++.+. .+. ...+..++|.++..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~-------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPE-------FAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56778888888888888888888888887766433 121 1235566666666666666666666666553
Q ss_pred HH---------------------------HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 306 RR---------------------------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 306 ~~---------------------------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
.- ++++-.+ +.+..+.++|.++..+|++++|++.|++++++
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----- 140 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIHKDSGNIPEAIASYRTALKL----- 140 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 10 0001111 22456677788888888888888777777643
Q ss_pred cCCchHHHHHHHHHHHHHHHhcc
Q 016307 359 LKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 359 ~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
+|++.....+++.++..++.+.
T Consensus 141 -~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 141 -KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp -CSCCHHHHHHHHHHHHHTTCCT
T ss_pred -CCCChHHHhhhhhHHHhcccHH
Confidence 6778888888888777766543
No 91
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.11 E-value=0.00015 Score=66.49 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=107.5
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...++...++.+++.+.+....... ...+......++.+....|++++|+..|++++++.....
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 345666777888889999999999988777666433 345567889999999999999999999999998766531
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.....+..+..+|.++..+|++++|+..|++++.+.......+........++.++..++.
T Consensus 258 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 258 --------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 1235577788999999999999999999999999998876555556666777777776654
No 92
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.09 E-value=0.00012 Score=67.14 Aligned_cols=168 Identities=15% Similarity=0.106 Sum_probs=111.8
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+..+........ . -+.....+..++.++...++...|...++.+.+.......
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 118 (338)
T 3ro2_A 50 GNAYFYLHDYAKALEYHHHDLTLARTIG----D----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--- 118 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT----C----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccc----c----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---
Confidence 3345667788888777754433322210 0 1223446667788888889999999999998887777643
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK 329 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~--------------------l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~ 329 (392)
...+......++.+....|+ +++|+..|++++.+.+... .....+..+..
T Consensus 119 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~ 188 (338)
T 3ro2_A 119 --KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG--------DRAAQGRAFGN 188 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Confidence 23456788899999999999 8888888888887755432 11244556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+|.++..+|++++|+..|++++.+.......+.......+++.++..++
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 7777777788888888888877777665433333444555555544443
No 93
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=4.6e-05 Score=61.67 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=84.2
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
....+.+|..+...+++.+|+..|+++.+. .+. -.....++|.++..+|++++|+..|++++++.....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 345566788888899999999999887643 332 235778999999999999999999999998765432
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.....++.++.++|.++..+|++++|++.|++++.+
T Consensus 77 -------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 223356788999999999999999999999998763
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.07 E-value=0.00011 Score=59.39 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=90.9
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
|...+.....|..+...+++..|+..++++.+. .+. -.....++|.+...+|++++|+..|++++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPE-------NAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 455667777888888999999999999877533 232 2346788999999999999999999999875
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
.+. ....+.++|.++..+|++++|++.|++++++ +|.+.....+++.+
T Consensus 77 -----~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 -----DSK-------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNC 124 (126)
T ss_dssp -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred -----hhh-------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence 222 2456789999999999999999999888764 78888888777655
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.05 E-value=4.3e-05 Score=73.38 Aligned_cols=133 Identities=11% Similarity=-0.036 Sum_probs=106.3
Q ss_pred hhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016307 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~ 314 (392)
.+.|......+++..|+..++++......+.. .........++|.+....|+++.|+..|++++++.+....
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--- 176 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--- 176 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---
Confidence 34556667789999999999988776666543 2456778999999999999999999999999998664321
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
....++..+.++|.++..+|++++|++.|++++.+.++....+..+....+++.++..++.
T Consensus 177 ----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 177 ----YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 1225788899999999999999999999999999998875545566677788888776654
No 96
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.05 E-value=8.9e-05 Score=68.64 Aligned_cols=134 Identities=8% Similarity=-0.124 Sum_probs=99.2
Q ss_pred hhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016307 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~ 314 (392)
..++......++...|+..++.+.+....... ......+.+.+|.++...|++++|+.+|++++++.+...
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~---- 189 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGID-----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH---- 189 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----
Confidence 34555666677888888887766543222111 122456889999999999999999999999998866432
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.. ..-.+..+.++|.++..+|++++|+.+|++++.+..........+.+..+++.++..++.+
T Consensus 190 ~~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 252 (293)
T 2qfc_A 190 DN---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCC
T ss_pred cc---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCc
Confidence 11 0112367889999999999999999999999999876655556677888888888877654
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.04 E-value=2.8e-05 Score=82.06 Aligned_cols=99 Identities=9% Similarity=0.207 Sum_probs=63.5
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..+|.++...+++.+|+..++++.+. ...-..+..++|.++..+|++++|+..|++++++ .
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l-----------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-------~ 141 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQI-----------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-------K 141 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Confidence 334444444445555555444443321 1122346666677776677777777777666654 2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+. .+..+.++|.++..+|++++|.+.|++++++....
T Consensus 142 P~-------~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 142 PD-------FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp SC-------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred CC-------ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 22 35678899999999999999999999999887543
No 98
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.04 E-value=1.5e-06 Score=68.86 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=35.3
Q ss_pred CceeccccccccccC-----------------ceeccccCcchHHhHhcCC----CCCCCCcccc
Q 016307 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.|.+. .+.++|+|.|+..||..|. .||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456799999987732 3557999999999999983 4999998754
No 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.03 E-value=6.3e-05 Score=60.83 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
...+.+++++|...+..|++++|+..|.+++++ .+. .+..+.++|.++..+|++++|+..|+++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456678899999999999999999999999976 232 255789999999999999999999999999
Q ss_pred HHHHhh-cCCchHHHHHHHHHHHHHHHh
Q 016307 353 RLESLT-LKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 353 ~le~l~-~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+-.... ..+..+.+..+++.++..++.
T Consensus 71 ~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 98 (127)
T 4gcn_A 71 VGRETRADYKLIAKAMSRAGNAFQKQND 98 (127)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence 876542 222234455666666655543
No 100
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.90 E-value=2.6e-06 Score=60.36 Aligned_cols=43 Identities=9% Similarity=0.236 Sum_probs=38.0
Q ss_pred ceeccccccccccCceec-cccCcchHHhHhcCC----CCCCCCccccc
Q 016307 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.+.|+|+++++. +|+++ ++||+|++.||.+|. .||..+.++..
T Consensus 3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 367999999988 99999 999999999999993 59999988765
No 101
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00032 Score=55.76 Aligned_cols=122 Identities=10% Similarity=0.017 Sum_probs=96.6
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+...|..+...+++..|+..++.+.+. .+.. .....+++.+....|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK----- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 345566677777889999999988877543 2222 357789999999999999999999999876
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.+. ....+.++|.++..+|++++|+..|++++.+-......|.+..+...+..+...+
T Consensus 68 --~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 --DPN-------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred --CCC-------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 222 2456788999999999999999999999999877777788888888887776544
No 102
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.87 E-value=0.00023 Score=65.84 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=97.3
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..+|.++...+++..|+.+++.+.+....+.. ....+..+..++|.++..+|++++|+.+|++++++.+...
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~- 230 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN- 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-
Confidence 35677888888899999999999999888777743 2456677899999999999999999999999999876532
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhc
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~-~~~A~~~~~eal~~le~l~~ 359 (392)
....++..+.++|.++..+|+ +++|+++|++++.+.+.+..
T Consensus 231 -------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 231 -------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp -------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 122568889999999999995 69999999999999987743
No 103
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=0.0011 Score=56.28 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=102.1
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch-hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~-e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
...+...|......+++..|+..|+.+.++......... .....-.....+++.+...+|++++|+..|.++|++....
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345666777777889999999999988877655322110 1122334588999999999999999999999999986666
Q ss_pred hhcCCCCCcchhHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHHHHH
Q 016307 310 VKRHSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl----~~la~~~~~~g~~~~A~~~~~eal~~le~l-~~~~~~~~l~~~l~~~~~~l 377 (392)
.+-.+. .+..+ .+.|.++..+|++++|+..|++++++--+- ..-+....+.+.+..-...|
T Consensus 91 ~e~~pd-------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k~ 156 (159)
T 2hr2_A 91 GELNQD-------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL 156 (159)
T ss_dssp CCTTST-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred ccCCCc-------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 654553 45566 999999999999999999999999997654 33344445555544444433
No 104
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=0.00022 Score=60.58 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+....++|......|++++|+..|.+++++.-...... ........+..+.++|.++..+|++++|+..|+++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 456778899999999999999999999999754421111 011111234578999999999999999999999999997
Q ss_pred HHh-hcCCchHHHH----HHHHHHHHHHHhc
Q 016307 355 ESL-TLKPEEAGLE----QRVRFLFQLLVVS 380 (392)
Q Consensus 355 e~l-~~~~~~~~l~----~~l~~~~~~l~~~ 380 (392)
.+. +.+|+++... .+++..+..|+.+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~ 118 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRG 118 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence 776 8899999998 9999988887754
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00028 Score=56.95 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.+.+..+...++.|......|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPE-------NAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 355677889999999999999999999999999865 222 245788999999999999999999998
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 350 AIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 350 al~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
++++ +|.+.....+++.++..++.+
T Consensus 73 al~~------~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 73 CIRL------DSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh------hhhhhHHHHHHHHHHHHCCCH
Confidence 8764 778888888888888777643
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.82 E-value=0.00024 Score=65.65 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=93.0
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..+|.++...+++..|+.+++.+.+......... ........++|.+...+|++++|+.+|++++++.....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~- 230 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN- 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-
Confidence 3566778888889999999999999988777665421 11226889999999999999999999999999864311
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhc
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESLTL 359 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A-~~~~~eal~~le~l~~ 359 (392)
. ...++..+.++|.++..+|++++| ..+|++++.+.+.+..
T Consensus 231 -~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 231 -S------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp -B------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -c------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 1 124577889999999999999999 7889999999987743
No 107
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00053 Score=57.19 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=98.4
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC----CCch---hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDL---EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~----~~~~---e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl 303 (392)
...+...|..+...+++..|+..|..+........ +... .+.........+++.++..+|++++|+..|.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566667777788999999999998876644321 1111 1245556788999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchH-HHHHHHHHHHHHHHhccc
Q 016307 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRVRFLFQLLVVSSL 382 (392)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~-~l~~~l~~~~~~l~~~~~ 382 (392)
++ .+. .+..+-.+|.++..+|++++|+..|++++.+ +|.+. .+...+..+...+....-
T Consensus 91 ~~-------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 91 KR-------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HH-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred hc-------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77 222 2457888999999999999999999888766 67777 566667777666655443
No 108
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.81 E-value=0.00038 Score=61.28 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=112.5
Q ss_pred HhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
...+.-.+..|++++|...+....... +.. ....+.+++.++...+++.+|+..++.+. ++.+
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~~~p 73 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLT------NNQ-------DSVTAYNCGVCADNIKKYKEAADYFDIAI----KKNY 73 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT------TTC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcc------CCC-------CcHHHHHHHHHHHHhhcHHHHHHHHHHHH----HhCc
Confidence 334455778899999988876332111 001 11345557788888899999988887664 2222
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
........++.+...+|++++|+..|++++++ .+.+......++..+.++|.++..+|++++|++.
T Consensus 74 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 74 -------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp -------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 23456788999999999999999999998865 2333333446677888999999999999999998
Q ss_pred HHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHhc
Q 016307 347 FQEAIKRLESLTLKPE--EAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 347 ~~eal~~le~l~~~~~--~~~l~~~l~~~~~~l~~~ 380 (392)
|++++++ +|. +.....+++.++..++..
T Consensus 140 ~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 140 YKHATDV------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------CCCcccHHHHHHHHHHHHHHHHH
Confidence 8887653 677 777888888877666554
No 109
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00016 Score=70.03 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=98.3
Q ss_pred HHHHHHHhhcHHHHHHhhhccHHHHHHHHhcc---cccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC
Q 016307 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERM---GNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 189 ~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~---~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~ 265 (392)
.+.+.+..|++++|...+.............. ......-......+..++.++...+++.++..++.........+.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34467888999999887742211110000000 000012233345677788888888999999888888776666553
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016307 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~ 345 (392)
. ........+.++.+....|.+++|+..|++++.+....... +..+....++|.++..+|++.+|+.
T Consensus 90 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 90 K-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------FLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp H-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------SSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred c-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHccChHHHHH
Confidence 2 12223445556666666677777777777766654432110 1234455666666666666666666
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 346 GFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 346 ~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.+++++..+.....++....+...++.++..+
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 66666665555444444444444444444433
No 110
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.79 E-value=3.4e-06 Score=67.84 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=0.8
Q ss_pred CceeccccccccccC-----------------ceeccccCcchHHhHhcCC----CCCCCCcccc
Q 016307 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
..-.|+||++.|.+. .+.++|+|.|+..||.+|. .||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 346799999997631 2335899999999999994 4999998643
No 111
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.74 E-value=0.00031 Score=68.80 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.....|.||.++..+|++++|+..|++++++.+........ ...+.++.++|.++..+|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999988776543322 1457789999999999999999999999999988
Q ss_pred HHh--hcCCchHHHHHHHH
Q 016307 355 ESL--TLKPEEAGLEQRVR 371 (392)
Q Consensus 355 e~l--~~~~~~~~l~~~l~ 371 (392)
+.+ ..++..+.+..+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHH
Confidence 776 33344444444444
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.71 E-value=0.00046 Score=65.58 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCC----chhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD----DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~----~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl 303 (392)
+.....+..++.++...+++..|+..++.+.+........ ..++.........+++.++..+|++++|+..|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677788888888999999999998886654332210 123445556788999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
++ .+. ....+.++|.++..+|++++|+..|++++++ +|.+.....+++.++..++.+
T Consensus 224 ~~-------~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 224 EL-------DSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHH
T ss_pred Hh-------CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHH
Confidence 76 222 2457889999999999999999999988765 677777777777777766554
No 113
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.69 E-value=0.00043 Score=67.80 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=90.5
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
...+++.+....|++.+|+..++++.++........ ..........+++.++..+|++++|+.+|++++++.+.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~--~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ--AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG--CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445677788788999999999999988766554322 234456678999999999999999999999999988776543
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRS--IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~--~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
... +.+..+.++|.++.. .+++++|++.|++++++ +|++......++.++.
T Consensus 131 ~~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 131 YRI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASY 183 (472)
T ss_dssp SCC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHH
T ss_pred cch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Confidence 322 235556666655544 45688888888887654 3444444444444433
No 114
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.61 E-value=0.00032 Score=59.46 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
....+|.+...+|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|+++++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 109 AYYKLGLVYDSMGEHDKAIEAYEKTISI-------KPG-------FIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHh-------cch-------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555566666666666555543 111 133455566666666666666666665543
No 115
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.61 E-value=0.00047 Score=60.73 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=107.8
Q ss_pred HHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchh
Q 016307 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e 270 (392)
.-.+..|++++|...+.... ... |.....+..++.++...++...|+..++.+.+ +.+....
T Consensus 50 ~~~~~~~~~~~A~~~~~~al-------~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~ 111 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAI-------KKN-------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIK----AVPGNAT 111 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-------HTT-------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHH
T ss_pred HHHHHhhcHHHHHHHHHHHH-------HhC-------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHH
Confidence 33566778888877665322 111 22344566778888888999999888877643 3455566
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhH--HHHHHHHHHHHHHhcCCH--------
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--VAVSLAKVADVDRSIGNE-------- 340 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~d--la~sl~~la~~~~~~g~~-------- 340 (392)
+...+......+|.+....|++++|+..|++++++ .+ + .+..+.++|.++..+|+.
T Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p-------~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 177 (228)
T 4i17_A 112 IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TS-------KKWKTDALYSLGVLFYNNGADVLRKATPL 177 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CC-------CcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778888999999999999999999999998864 12 2 244555666666555555
Q ss_pred ------------HHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHH
Q 016307 341 ------------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRVRFLF 374 (392)
Q Consensus 341 ------------~~A~~~~~eal~~le~l-~~~~~~~~l~~~l~~~~ 374 (392)
..+...|++++..+++. ...|++..+...+..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 178 ASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55666778888888887 77888888887777654
No 116
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.61 E-value=0.0012 Score=54.95 Aligned_cols=101 Identities=15% Similarity=0.036 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc----hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~----~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.....+...|......|++++|+..|.+++.+.............. ....+..+.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456788999999999999999999999999866544322211111 123456788999999999999999999998
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 350 AIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 350 al~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
++.+ +|.+.....+++.++..++.+
T Consensus 89 al~~------~p~~~~a~~~~g~~~~~~g~~ 113 (162)
T 3rkv_A 89 VLKR------EETNEKALFRRAKARIAAWKL 113 (162)
T ss_dssp HHHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred HHhc------CCcchHHHHHHHHHHHHHhcH
Confidence 8876 688888888888888777654
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.59 E-value=0.0013 Score=56.79 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=95.4
Q ss_pred HHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCc-----hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD-----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 230 h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~-----~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
....+...+..+...+++..|+.+++.+.+......... ............+++.+....|++++|+..|+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345666777888888999999999887755432211100 011122246778999999999999999999999997
Q ss_pred HHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 305 ~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+ .+. ....+..+|.++..+|++++|+..|++++.+ +|.+..+...++.++..++..
T Consensus 117 ~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 117 I-------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp H-------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHH
T ss_pred h-------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHH
Confidence 6 222 2456788999999999999999999888765 677778888888877766543
No 118
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.57 E-value=0.00033 Score=61.87 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhc-----------CCchhhhcHHHHHHHHH
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM-----------GDADAAVAYFADSVEFL 261 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~-----------h~~h~a~~~~e~~~e~~ 261 (392)
..+.|++++|...+.... ...+ .....+..++.++... ++..+|+..++.+.+.
T Consensus 49 ~~~~g~~~~A~~~~~~al-------~~~P-------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~- 113 (217)
T 2pl2_A 49 QLKLGLVNPALENGKTLV-------ARTP-------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113 (217)
T ss_dssp HHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHcCCHHHHHHHHHHHH-------HhCC-------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-
Confidence 455677777766654221 1111 2223344555555555 6666676666555332
Q ss_pred HhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHH
Q 016307 262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED 341 (392)
Q Consensus 262 ~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~ 341 (392)
.+.. ......+|.+....|++++|+..|++++++. . -...+.++|.++..+|+++
T Consensus 114 ---~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~-------~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 114 ---NPRY-------APLHLQRGLVYALLGERDKAEASLKQALALE--------D-------TPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp ---CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-------CHHHHHHHHHHHHHHTCHH
T ss_pred ---Cccc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------c-------chHHHHHHHHHHHHcCCHH
Confidence 3322 2466789999999999999999999999873 1 1345779999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 342 VAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 342 ~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|+..|++++++ +|++.....+++.++..++.
T Consensus 169 ~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 169 EALAQYAKALEQ------APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHHHH------STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHh------CCCChHHHHHHHHHHHHccC
Confidence 999999888764 78888888888877655543
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.54 E-value=0.00043 Score=57.48 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~ 360 (392)
.++.++...|++++|+..|++++++ .+. -...+..+|.++..+|++++|+..|++++++ +
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~-------~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~ 95 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV-------QER-------DPKAHRFLGLLYELEENTDKAVECYRRSVEL------N 95 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh------C
Confidence 4455555555555555555554443 111 1233444555555555555555444444432 3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 016307 361 PEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 361 ~~~~~l~~~l~~~~~~l~ 378 (392)
|.+.....+++.++..++
T Consensus 96 p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 96 PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 444444444444444433
No 120
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.007 Score=53.18 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=103.3
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+....... .....+..++.++...++...|+..++.+.+........
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-- 74 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH---------------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD-- 74 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh---------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--
Confidence 334667888888888776332211 112355667778888899999999999887766554332
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCcchhHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKV 330 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~-------------------~~~~~~~~~~~~~~~dla~sl~~l 330 (392)
...+......++.+....|++++|+..|++++++. +...... .+....+..+
T Consensus 75 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 145 (258)
T 3uq3_A 75 --YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLE 145 (258)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHH
Confidence 23346788899999999999999999999998831 1111111 1334556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
|.++..+|++++|+..|++++.+ .|.+..+..+++.++..++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhC
Confidence 77788888888888777777653 3444555555555544433
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.46 E-value=0.0024 Score=60.15 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=99.4
Q ss_pred HHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC
Q 016307 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~ 265 (392)
++-.+...++.|++++|...+..... ..|.....+..++.++...++...|+.+++.+.+. .
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~ 129 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAIL--------------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----Q 129 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----C
Confidence 44445567888999999888763321 11223446677788888888888998888877543 2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC----------------Cc------chh--
Q 016307 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV----------------PS------QVL-- 321 (392)
Q Consensus 266 ~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~----------------~~------~~~-- 321 (392)
+. .......++.+....|++++|+..|++++++........... .. ..+
T Consensus 130 p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 130 PN-------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 21 234677888888889999999999998887533221110000 00 000
Q ss_pred ------H--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 322 ------D--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 322 ------d--la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
+ .+..+..+|.++..+|++++|+..|++++++ .|.+.....+++.++..+
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHc
Confidence 0 1345567777888888888888777776654 344455555555544443
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.42 E-value=0.0049 Score=47.83 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=90.0
Q ss_pred HHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
....+..++..+...++...|+.+++..... .+.. ......++.+....|++++|+..|+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 3445666777777888888998888776543 1211 346678899999999999999999999875
Q ss_pred hhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.+. ....+..+|.++..+|++++|+..|++++.+ .|.+......++.++..++.+
T Consensus 76 ---~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPA-------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---Ccc-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhcC
Confidence 122 1346788999999999999999999888765 566777777888887776543
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.40 E-value=0.0019 Score=54.05 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
|.+...+..++.++...+++.+|+..++.+... .+.. ......+|.+...+|++++|+..|++++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 556667777888888899999999998866433 3333 346788999999999999999999999876
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++-
T Consensus 100 -----~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 -----GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -----SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2332 3367899999999999999999999998763
No 124
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.40 E-value=0.0011 Score=63.92 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=100.0
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC-----CCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP-----MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~-----~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
...+..++..+...+++..|+..++.+.+...... ...............+++.++..++++++|+..|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44566778888889999999999998876543321 0001145566778899999999999999999999999864
Q ss_pred HHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhcc
Q 016307 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~~ 381 (392)
.+. .+..+..+|.++..+|++++|+..|++++++ .|.+..+...++.++..++.+.
T Consensus 303 -------~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 303 -------DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp -------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------Cch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHH
Confidence 222 2567889999999999999999999988765 5777888888888877776543
No 125
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.40 E-value=0.00096 Score=66.24 Aligned_cols=134 Identities=11% Similarity=0.029 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCC----chhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016307 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD----DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 226 ~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~----~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~ 301 (392)
.-+.....+...+..+...+++..|+..|+.+.+........ ..++.........+++.++..++++++|+..|.+
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345556677788888888999999999999887665433211 1223455567889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 302 sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
++++. +. .+..+.++|.++..+|++++|+..|++++++ +|.+......++.++..++.
T Consensus 343 al~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 343 ALGLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHH
T ss_pred HHhcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Confidence 99762 22 2456889999999999999999999888754 56666666666666665553
No 126
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=8e-05 Score=55.67 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=36.2
Q ss_pred ceeccccccccc-cCceecccc-----CcchHHhHhcC------CCCCCCCccccc
Q 016307 89 PLSCMICQALLF-ECSKCTPCS-----HVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 89 ~l~C~iC~~~~~-~~p~~~~C~-----h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
...|.||++.+. ..++++||. |.|...||.+| ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456999998764 357889996 99999999999 259999997754
No 127
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.39 E-value=0.004 Score=58.97 Aligned_cols=147 Identities=15% Similarity=0.088 Sum_probs=102.0
Q ss_pred HHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchh
Q 016307 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e 270 (392)
.-.+..|++++|...+....... +.... ......+..++.++...++...+..+++++.........
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~------~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 88 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEEL------PPGWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---- 88 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC------CTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC------CCCch---hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc----
Confidence 34566788888777654322111 11111 112334556677777789999999999988777666543
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
..........++.+....|++++|+..|++++++.+....... ...+..+.++|.++..+|++++|...|+++
T Consensus 89 -~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 89 -WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2344567789999999999999999999999998765432211 134566778899999999999999999998
Q ss_pred HHHHHHh
Q 016307 351 IKRLESL 357 (392)
Q Consensus 351 l~~le~l 357 (392)
+.+....
T Consensus 162 l~~~~~~ 168 (373)
T 1hz4_A 162 IEVLSSY 168 (373)
T ss_dssp HHHTTTS
T ss_pred HHHhhcc
Confidence 8776543
No 128
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.34 E-value=0.0035 Score=59.00 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++.+....|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++.+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 276 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEI--- 276 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 456788889989999999999999988752 22 1456788999999999999999999888765
Q ss_pred hhcCCchHHHHHHHHHHHHHHHh
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 277 ---~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 277 ---QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTC
T ss_pred ---CCCchHHHHHHHHHHHHCCC
Confidence 66777777778877766654
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.31 E-value=0.0021 Score=53.17 Aligned_cols=123 Identities=18% Similarity=0.050 Sum_probs=88.5
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
|.....+..++......+++.+|+..++..... .+.. ......+|.+....|++++|+..|++++++
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----Cccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 334445666777777889999998888766432 3322 245678999999999999999999999875
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++. ..+|....+..+....+..+.
T Consensus 85 -----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 85 -----DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI---ANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp -----STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCGGGHHHHHHHHHHHHHC-
T ss_pred -----CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCCcchHHHHHHHHHHHHHH
Confidence 2322 2356789999999999999999999988776 344555556666555555443
No 130
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.31 E-value=0.012 Score=45.53 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=88.8
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++..+...+++..|+.+++.+... .+.. ......++.+....|++++|+..|++++++.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~- 72 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR- 72 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-
Confidence 34555667777788888888888776543 1211 34667889999999999999999999998754321
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.........+..+|.++..+|++++|+..|++++.+ .| +......+..++..++.
T Consensus 73 ------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 ------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC-CHHHHHHHHHHHHHHHH
Confidence 112234667889999999999999999999988874 33 45566667666666554
No 131
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0035 Score=60.41 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=103.5
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
-...|++++|...+.......... . .-.........++.+....++...++.+++.............
T Consensus 65 y~~~~~~~~a~~~~~~~~~~~~~~----~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 132 (434)
T 4b4t_Q 65 YVTMGAKDKLREFIPHSTEYMMQF----A----KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF---- 132 (434)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHHTS----C----HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS----
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc----c----chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH----
Confidence 456788888887775443322111 0 0011223445556666667888899999998887777765432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.......+++.++...|++++|+..+.+++....... . ....+..+..++.++..+|++.+|...|++++.
T Consensus 133 -~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 133 -LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----D----KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp -SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS----C----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc----c----chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2456788999999999999999999999887643321 1 125677889999999999999999999999999
Q ss_pred HHHHhh
Q 016307 353 RLESLT 358 (392)
Q Consensus 353 ~le~l~ 358 (392)
+...+.
T Consensus 204 ~~~~~~ 209 (434)
T 4b4t_Q 204 AANSIY 209 (434)
T ss_dssp HHHHSC
T ss_pred HhhcCC
Confidence 887654
No 132
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0066 Score=53.38 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=96.7
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
.+.+...+.++...+++..|+.+++.+.+.. .. ......++.+....|++++|+..|++++++.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3456677888888899999999998776543 11 23678899999999999999999999998754432
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCchHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRV 370 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~-------------------le~l-~~~~~~~~l~~~l 370 (392)
......+..+..+|.++..+|++++|+..|++++.+ ++++ ...|.+.....++
T Consensus 73 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T 3uq3_A 73 -------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145 (258)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 112234677889999999999999999999999883 3333 4666777777777
Q ss_pred HHHHHHHH
Q 016307 371 RFLFQLLV 378 (392)
Q Consensus 371 ~~~~~~l~ 378 (392)
+.++..++
T Consensus 146 ~~~~~~~~ 153 (258)
T 3uq3_A 146 GKEYFTKS 153 (258)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 77665554
No 133
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.25 E-value=8.3e-05 Score=57.02 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=36.6
Q ss_pred eeccccccccccCceeccccCcchHHhHhcC-----CCCCCCCcccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKI 133 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~~ 133 (392)
..|++|.-.+..-.+++||.|.||..|+..| ..||.|+.++..+
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 3689998877767899999999999999775 3599999987763
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.25 E-value=0.0038 Score=48.90 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=86.7
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...+++..|+.+++.+.+. .+.. ......++.+....|++++|+..|++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----
Confidence 345566777777888999998888766432 2222 3467889999999999999999999998751
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+. ....+..+|.++..+|++++|+..|++++.+ .|.+......++.++..++
T Consensus 81 ---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 81 ---PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHT
T ss_pred ---CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhc
Confidence 21 1446788999999999999999999888764 4566667777777766543
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.22 E-value=0.0039 Score=50.66 Aligned_cols=121 Identities=20% Similarity=0.120 Sum_probs=87.9
Q ss_pred HHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
....+..++......+++.+|+..++.... +.+... .....+|.+....|++++|+..|++++++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDA-------RYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 344555667777788999999888876643 233222 35678899999999999999999999875
Q ss_pred hhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.+.+ ...+.++|.++..+|++++|+..|++++.+. ..+|....+..+....+..+.
T Consensus 82 ---~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 82 ---DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALA---AAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp ---CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HTCGGGHHHHHHHHHHHHHHH
T ss_pred ---CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHHH
Confidence 2322 2356789999999999999999999998776 345555666666655555544
No 136
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.21 E-value=0.0036 Score=58.67 Aligned_cols=124 Identities=21% Similarity=0.195 Sum_probs=93.9
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++.++...++...|+.+++.+... .+. .......++.+....|++++|+..|++++++.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----- 281 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ----- 281 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 35556777777888999998888876543 222 23467889999999999999999999998761
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-----hcCCchHHHHHHHHHHHHHHHhc
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-----TLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l-----~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+ +....+..+|.++..+|++++|+..|++++.+.... ..++....+..+++.++..++.+
T Consensus 282 --~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 282 --P-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp --T-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred --C-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 2 124567899999999999999999999999876543 22344467778888888877654
No 137
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.17 E-value=0.0021 Score=53.21 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=85.1
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
.....++.++...+++..|+..++.+.+. .+.. ..+...+|.+....|++++|+..|++++++
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~----~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------ 94 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV----QERD-------PKAHRFLGLLYELEENTDKAVECYRRSVEL------ 94 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh------
Confidence 34456788888899999999998877543 3322 347789999999999999999999999876
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG-FQEAIKRLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~-~~eal~~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
.+. ....+.++|.++..+|++.+|+.. ++++++ .+|.+..+...++.++..
T Consensus 95 -~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~------l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 95 -NPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAK------LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp -CTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH------HSTTCHHHHHHHHHHHHT
T ss_pred -CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------hCcCCHHHHHHHHHHHHH
Confidence 232 245678999999999998877654 355554 467777777766666554
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0032 Score=49.68 Aligned_cols=85 Identities=13% Similarity=0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......+|......|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEK-- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4567889999999999999999999998762 22 1457889999999999999999999988765
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+|.+.....+++.++..++.+
T Consensus 68 ----~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 68 ----DPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCH
T ss_pred ----CCCcHHHHHHHHHHHHHHhCH
Confidence 677777888888877766543
No 139
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.15 E-value=0.0063 Score=44.48 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 3566788999999999999999999998751 21 1346778999999999999999999888764
Q ss_pred HhhcCCchHHHHHHHHHHHHHH
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l 377 (392)
+|.+.....+++.++..+
T Consensus 73 ----~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHhc
Confidence 577778888888777654
No 140
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.13 E-value=0.0071 Score=56.59 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|++++.+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 280 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL-- 280 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 456678899999999999999999998875 122 2456788999999999999999999988765
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHh
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.|.+.....+++.++..++.
T Consensus 281 ----~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 281 ----QPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTC
T ss_pred ----CCCcHHHHHHHHHHHHHCCC
Confidence 56777777777777766554
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.13 E-value=0.002 Score=53.66 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=78.8
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+...+.++...+++..|+.+++.+.+.. +. -......++.++...|++++|+..|++++++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 75 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD---- 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----Cc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence 4456667778888899999999988775432 22 23577899999999999999999999999762
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
+. ....+.++|.++..+|++++|+..|++++.+-
T Consensus 76 ---p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 ---PK-------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22 24567899999999999999999999998764
No 142
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.13 E-value=0.013 Score=55.36 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
++.+...+.+....++...+..+++++... ..... ..........++.+....|++++|+..|++++++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEE---LPPGW---FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCc---hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 445555666666788888888887766432 22211 123455778899999999999999999999999866531
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK--PEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~--~~~~~l~~~l~~~~~~l~ 378 (392)
.....+..+.++|.++..+|++++|+..|++++.+.+..... |.......+++.++..++
T Consensus 88 --------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 88 --------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred --------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence 123456678899999999999999999999999999876332 555666666776665543
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.12 E-value=0.0058 Score=50.99 Aligned_cols=89 Identities=9% Similarity=-0.068 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+.-......+|.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444567788999999999999999999998865 2332 4567899999999999999999998887
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 352 KRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 352 ~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.+ +|++.....+++.++..++.+
T Consensus 98 ~l------~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 98 AL------GKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HH------SSSCCHHHHHHHHHHHHTTCH
T ss_pred hh------CCCCcHHHHHHHHHHHHcCCH
Confidence 54 577888888899888877654
No 144
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0059 Score=46.44 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....+|.+....|++++|+..|++++++ .+.. ...+.++|.++..+|++++|+..|++++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLR---- 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence 45678899999999999999999999976 2221 45678999999999999999988888764
Q ss_pred hhcCCch------HHHHHHHHHHHHHHHhccc
Q 016307 357 LTLKPEE------AGLEQRVRFLFQLLVVSSL 382 (392)
Q Consensus 357 l~~~~~~------~~l~~~l~~~~~~l~~~~~ 382 (392)
..|.+ .....+++.++..++....
T Consensus 67 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 67 --YTSTAEHVAIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp --SCSSTTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred --hCCCccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 45565 6677778888888875543
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.11 E-value=0.013 Score=44.80 Aligned_cols=114 Identities=24% Similarity=0.373 Sum_probs=83.2
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+..++.++...++...++.+++..... .+.. ......++.+....|++++|+..|+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 4455666666778888888888766433 1211 235678899999999999999999998864
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.+. ....+..++.++..+|++++|+..|++++.+ .|.+.....+++.++..+
T Consensus 73 ~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 73 DPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhc
Confidence 121 1345678899999999999999988887654 567777777777776543
No 146
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0029 Score=57.97 Aligned_cols=124 Identities=14% Similarity=0.241 Sum_probs=79.4
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..++.++...++...|+.+++.+.+ +.+. -......++.+....|++++|+..|++++++........
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALS----IAPE-------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT----TCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH----hCCC-------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 33455555566666666666654432 2221 234677889999999999999999999998754432211
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
. ....+..+..+|.++..+|++++|+..|++++++ .|.+.....+++.++..++.
T Consensus 231 ~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 231 T-----VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp T-----TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTC
T ss_pred c-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------CccchHHHHHHHHHHHHhcc
Confidence 1 0122346678888888888888888888877754 34555555666665555443
No 147
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.0012 Score=60.59 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=92.7
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...++..+|+.+++.+.+.......... ..........++.+....|++++|+..|++++++.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---- 266 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT--VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---- 266 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT--TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc--ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----
Confidence 344556677777888999999998888776655443221 12223477889999999999999999999998762
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+. ....+..+|.++..+|++++|+..|++++ ...|.+......++..+....
T Consensus 267 ---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 267 ---PQ-------NASTYSAIGYIHSLMGNFENAVDYFHTAL------GLRRDDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp ---TT-------CSHHHHHHHHHHHHHTCHHHHHHHHHTTT------TTCSCCHHHHHHHHHHHHTTT
T ss_pred ---cc-------chHHHHHHHHHHHHhccHHHHHHHHHHHH------ccCCCchHHHHHHHHHHHHHh
Confidence 22 13467889999999999999988887765 456888888888888775433
No 148
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.02 E-value=0.0043 Score=54.14 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred hHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhh----------------hhhhhhhcCCchhhh
Q 016307 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGM----------------LGDCCRAMGDADAAV 251 (392)
Q Consensus 188 c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~----------------fC~~~~~~h~~h~a~ 251 (392)
..+...+..|++++|...+...... -|.....+.+ ++.++...+++..|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 3455678889999998887633211 1222223333 788888889999999
Q ss_pred cHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 252 AYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 252 ~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
..++.+.+. .+.. ......+|.+....|++++|+..|++++++
T Consensus 75 ~~~~~al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 75 LFYKELLQK----APNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888876543 2322 346788999999999999999999999875
No 149
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.02 E-value=0.011 Score=50.67 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchh
Q 016307 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e 270 (392)
.-.+..|++++|...+...... . +.....+..++.++...++...++.+++...+. .+.
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~-------~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~--- 74 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKS-------D-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPD--- 74 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------C-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-------C-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCC---
Confidence 3456778888888776422111 1 111223344455555555666665555544322 111
Q ss_pred hhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLN 304 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~-g~l~~A~~~~e~sl~ 304 (392)
.......++.+.... |++++|+..|+++++
T Consensus 75 ----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 75 ----SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 112334555555555 566666655555543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.00 E-value=0.0046 Score=51.38 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.....+..++.+....|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------Cc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445677889999999999999999999998762 22 2456889999999999999999999988765
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 75 ------~p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 75 ------DPKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCHHHHHHHHHHHHHccC
Confidence 56777777788877766654
No 151
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.98 E-value=0.029 Score=48.66 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=82.3
Q ss_pred hhhhhhcCCchhhhcHHHHHHHHH---------HhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 016307 238 GDCCRAMGDADAAVAYFADSVEFL---------MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 238 C~~~~~~h~~h~a~~~~e~~~e~~---------~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~ 308 (392)
+......+++..|+..++.+.+.. ..+... .........++|.+....|++++|+..|++++++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN----SEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch----hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 334456778888888887664321 111111 1112233455999999999999999999999875
Q ss_pred HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++ +|++.....+++.+|...+
T Consensus 84 ----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 84 ----APNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHh
Confidence 2322 456889999999999999999999888764 7888888888887765443
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00046 Score=50.56 Aligned_cols=44 Identities=25% Similarity=0.685 Sum_probs=36.8
Q ss_pred CceeccccccccccCceeccccCcchHHhHhcCC------CCCCCCcccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
..-.|.||.+++........|+|.|=..||.+|+ .||+|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4467999999988666777999999999999884 4999998654
No 153
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.96 E-value=0.009 Score=52.72 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=13.7
Q ss_pred HhHHHHHHHhhcHHHHHHhhh
Q 016307 187 VQQAMRAFRAQNVESAKSRLS 207 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~ 207 (392)
...+.-.+..|++++|...+.
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~ 61 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLR 61 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHH
Confidence 333444567788888877765
No 154
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.004 Score=59.18 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.....+|.++..+|++++|+..|++++. .+|.+.....+++.++...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcC
Confidence 3456677788888888888877777664 36777777777777765544
No 155
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.92 E-value=0.0026 Score=57.21 Aligned_cols=166 Identities=8% Similarity=-0.041 Sum_probs=109.4
Q ss_pred HHhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCC
Q 016307 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~ 265 (392)
++-.+...+..|++++|...+... +...+.+. .....+.+++.++...+++..|+..++......
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 82 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAV-------FTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---- 82 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------GGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-------HHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence 444566678899999998877522 11112111 113467778888888999999998888764432
Q ss_pred CCchhhhHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcch----------hHHHHHH
Q 016307 266 MDDLEIIHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSL 327 (392)
Q Consensus 266 ~~~~e~~~~i~~~~~~l~~l~~~--------~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~----------~dla~sl 327 (392)
+.. .....+.-.+|.+... .|++++|+..|+++++.. +...... ..++...
T Consensus 83 p~~----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 83 QID----PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp TTC----TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHH
Confidence 211 1234567888999988 899999999999988642 1111000 1222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
-++|.++..+|++++|+..|+++++.. ...+.....+.+++.++..++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~ 201 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQ 201 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhccc
Confidence 678999999999999999998887643 33333556777788877776443
No 156
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.91 E-value=0.003 Score=62.85 Aligned_cols=120 Identities=20% Similarity=0.124 Sum_probs=84.1
Q ss_pred HHHhhhhhhhhhc---------CCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHc--------CCHHH
Q 016307 232 AVLGMLGDCCRAM---------GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQA 294 (392)
Q Consensus 232 ~~L~~fC~~~~~~---------h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~--------g~l~~ 294 (392)
..+..++.++... +++.+|+..++++.+. .+.. ......++.++... |++++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLD-------GRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHHhhccccchHHH
Confidence 3455566666666 6666777666655432 2222 34667888888887 88999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 016307 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLF 374 (392)
Q Consensus 295 A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~ 374 (392)
|+..|++++++... ..+.+..+.++|.++..+|++++|+..|++++.+ +|++.....+++.++
T Consensus 240 A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 240 ALSAYAQAEKVDRK-----------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL------DPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 99999999876210 1123567889999999999999999999988764 566776666776666
Q ss_pred HHHHh
Q 016307 375 QLLVV 379 (392)
Q Consensus 375 ~~l~~ 379 (392)
..++.
T Consensus 303 ~~lg~ 307 (474)
T 4abn_A 303 EFLSR 307 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 157
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.88 E-value=0.0049 Score=62.46 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...+++.+|+..++++.+ +.+.. ......++.++..+|++++|+..|++++++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 86 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDA----- 86 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 34566677777778888888888776643 22222 346788999999999999999999999875
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.+. ....+.++|.++..+|++++|++.|++++++ +|.+.....+++.++..+
T Consensus 87 --~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 87 --APE-------HPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred --CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Confidence 222 1456788999999999999999998888765 567777777777777666
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.87 E-value=0.0037 Score=62.44 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=84.4
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+..++.++...+++.+|+.+++++.+. .+. -.....+++.++..+|++++|+..|++++++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL----NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4455666777788889999888877544 221 2457789999999999999999999999876
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
.+. .+..+.++|.++..+|++++|++.|++++++ +|.+.....+++.+
T Consensus 70 ~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 70 DKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQEC 117 (477)
T ss_dssp CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHH
T ss_pred CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 222 2557889999999999999999999998875 45555556666555
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.84 E-value=0.0045 Score=58.63 Aligned_cols=103 Identities=10% Similarity=-0.024 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
..........+|.+....|++++|+..|++++++.........+... .....+..+.++|.++..+|++++|+..|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556788999999999999999999999999874322100000000 01123567889999999999999999999998
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 351 IKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 351 l~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+++ +|.+.....+++.++..++.+
T Consensus 223 l~~------~p~~~~a~~~lg~~~~~~g~~ 246 (336)
T 1p5q_A 223 LEL------DSNNEKGLSRRGEAHLAVNDF 246 (336)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHh------CCCcHHHHHHHHHHHHHCCCH
Confidence 875 677888888888887766543
No 160
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.83 E-value=0.018 Score=44.42 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
-.||...+..+++..|+..|+++++....... .....+..+..||.++..+|+++.|+..+++++. .
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~------l 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------L 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh------c
Confidence 36899999999999999999999986532110 1123456779999999999999999999888865 4
Q ss_pred CCchHHHHHHHH
Q 016307 360 KPEEAGLEQRVR 371 (392)
Q Consensus 360 ~~~~~~l~~~l~ 371 (392)
.|.+...+.++.
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 777888777776
No 161
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.83 E-value=0.0039 Score=54.79 Aligned_cols=62 Identities=21% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.+..++.+....++..+|+..++.+. ++.+.. ......++.+....|++++|+..|++++++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL----KENPQD-------PEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----TTSSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556667777788888887776553 233333 346778999999999999999999998874
No 162
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.0078 Score=57.17 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+.++|.++..+|++++|+..|++++. .+|.+.....+++.++..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALS------LSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcCCHHHHHHHHHHHHHcCC
Confidence 344555555555555555555544433 356666677777776665543
No 163
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.79 E-value=0.0032 Score=61.10 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhhhhhcCC-chhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 229 QLGAVLGMLGDCCRAMGD-ADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 229 ~h~~~L~~fC~~~~~~h~-~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.+...+..++.++...++ +.+|+..++++.+. .+.. ..+...+|.+...+|++++|+..|++++++
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~-------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKN-------YQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455566666666675 77777776655332 2222 235566777777777777777777777653
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.79 E-value=0.034 Score=43.85 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++..+...+++..|+..++.+... .+. .......++.+....|++++|+..|++++++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 73 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR----NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALELD----- 73 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh----CcC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence 34556677777888888988888776543 222 23477889999999999999999999998752
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
+. ....+..+|.++..+|++++|+..|++++.+-..
T Consensus 74 --p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 --GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --ch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 22 2456788999999999999999999999988765
No 165
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.77 E-value=0.012 Score=59.01 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
....++.+....|++++|+..|++++++ .+. ....+..++.++...|++++|++.|++++++....
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL-------FQY-------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 4455666666677777777777776643 121 13457888999999999999999999999887766
Q ss_pred hcCCch-HHHHHHHHHHHHHHHh
Q 016307 358 TLKPEE-AGLEQRVRFLFQLLVV 379 (392)
Q Consensus 358 ~~~~~~-~~l~~~l~~~~~~l~~ 379 (392)
..+|++ ......++.++..++.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHhcC
Confidence 666665 5666667776655443
No 166
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.76 E-value=0.0086 Score=58.03 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=83.0
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNVR 306 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~-l~~A~~~~e~sl~~~ 306 (392)
+.+...+.+++.++...+++.+|+..++.+.+ +.+. -..+...+|.+...+|. +++|+..|++++++-
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~-------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAA-------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCcc-------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 55566777788888788889999888876643 2232 33577889999999996 999999999998741
Q ss_pred H----------HHhhc--CCCCCcchhHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 016307 307 R----------DAVKR--HSNVPSQVLDV--------AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGL 366 (392)
Q Consensus 307 ~----------~~~~~--~~~~~~~~~dl--------a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l 366 (392)
- .+... ..+.....++. ...+.++|.++..+|++++|+..|+++++ .+|.+...
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~------l~P~~~~a 236 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK------EDVRNNSV 236 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH------HCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH------hCCCCHHH
Confidence 1 00000 01111111111 22334556666666666666655555543 46777777
Q ss_pred HHHHHHHHHHHH
Q 016307 367 EQRVRFLFQLLV 378 (392)
Q Consensus 367 ~~~l~~~~~~l~ 378 (392)
..+++.++..+.
T Consensus 237 ~~~lg~~l~~l~ 248 (382)
T 2h6f_A 237 WNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 777777776643
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.74 E-value=0.0091 Score=57.50 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC-CC-CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~-~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
......+..++......|++++|+..|++++++......... +. .......+..+.++|.++..+|++++|+..|+++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344567788999999999999999999999997654321000 00 0112245678889999999999999999999888
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 351 IKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 351 l~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
++ .+|.+.....+++.++..++.+
T Consensus 300 l~------~~p~~~~a~~~lg~~~~~~g~~ 323 (370)
T 1ihg_A 300 LE------IDPSNTKALYRRAQGWQGLKEY 323 (370)
T ss_dssp HT------TCTTCHHHHHHHHHHHHHTTCH
T ss_pred HH------hCchhHHHHHHHHHHHHHccCH
Confidence 76 4678888888888888776543
No 168
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.74 E-value=0.048 Score=44.24 Aligned_cols=99 Identities=10% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
....+...+.++...+++..|+..++.+.+. .+.. ......++.+....|++++|+..|++++++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--- 77 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD--- 77 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 3556677788888889999998888876543 2211 3467788999999999999999999998762
Q ss_pred hhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
+. ....+..+|.++..+|++++|+..|++++.+
T Consensus 78 ----~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 78 ----KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22 1446788999999999999999999988765
No 169
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.73 E-value=0.024 Score=43.01 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....+|.+....|++++|+..|++++++ .+.. ...+..+|.++..+|++++|+..|++++.+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46678999999999999999999999875 2222 236788999999999999999999999988754
Q ss_pred h
Q 016307 357 L 357 (392)
Q Consensus 357 l 357 (392)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 4
No 170
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.72 E-value=0.02 Score=50.35 Aligned_cols=51 Identities=8% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
....+..+|.++..+|++++|+..|++++++ .|.+......++.++..++.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCC
Confidence 3455666777777777777777777766543 45556666666666655543
No 171
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.72 E-value=0.01 Score=51.82 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=84.3
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+...... . +.....+..++.++...++...|+.+++...+. .+..
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~-------~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~---- 124 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALEL-------D-------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMEN---- 124 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------C-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCCS----
T ss_pred HHHcCCHHHHHHHHHHHHHc-------C-------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCC----
Confidence 45567777776665422111 1 111234445566666677777777777665432 1211
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
......++.+....|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++.
T Consensus 125 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 125 ---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------EN-------DTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345677888888888888888888877641 11 123456677777777888877777776654
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
. .|.+......++.++..++
T Consensus 188 ~------~~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 188 Q------DPGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp H------CTTCHHHHHHHHHHHHHTT
T ss_pred h------CcccHHHHHHHHHHHHHcc
Confidence 3 4455555555666555443
No 172
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.70 E-value=0.011 Score=48.75 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.-......++.+....|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------Cccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33456778899999999999999999998864 2321 445678999999999999999999988764
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 85 ------~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 85 ------DIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp ------STTCTHHHHHHHHHHHHTTC
T ss_pred ------CCCCchHHHHHHHHHHHcCC
Confidence 57777777788877766554
No 173
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.67 E-value=0.042 Score=52.82 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=62.1
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~-----~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~ 306 (392)
..+..++.++...++...|+.+++.... +.+........+. .....++.+....|++++|+..|++++++.
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666667777777777766542 2232222222111 122344778888899999999999988641
Q ss_pred HHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+.+. ......+..++.++..+|++++|+..|++++.
T Consensus 288 -------p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 288 -------PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp -------CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -------Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 11233455666666666776666666666554
No 174
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.64 E-value=0.0082 Score=51.64 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=83.4
Q ss_pred hhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
..+..+...+++..|+..++.+ +.. -......++.+....|++++|+..|++++++. +.
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a------~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~ 69 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV------QDP--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KH 69 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS------SSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH------cCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc
Confidence 3455566677777777766543 222 13478899999999999999999999998762 21
Q ss_pred CCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCchHHHHHHHHHHHHHHHh
Q 016307 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~----------~~~~~~~l~~~l~~~~~~l~~ 379 (392)
....+.++|.++..+|++++|+..|++++.+...-. ..|.......+++.++..++.
T Consensus 70 -------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 70 -------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred -------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 245678999999999999999999999987543222 334555667777776665543
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.035 Score=41.94 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+..++.++...+++..++..++.+... .+.. ......++.+....|++++|+..|++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 3445566667788888888888766443 2211 3466788899999999999999999988751
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
+. ....+..+|.++..+|++++|+..|++++. ..|.+......++.+
T Consensus 69 -~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 69 -PD-------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK------HEANNPQLKEGLQNM 115 (118)
T ss_dssp -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTCHHHHHHHHHH
T ss_pred -cc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHh
Confidence 21 134677899999999999999988877654 456666666555544
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.61 E-value=0.022 Score=45.06 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|.+++.+. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALEL-- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4567889999999999999999999998762 22 1456889999999999999999999888764
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHh
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 73 ----~p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 73 ----DGQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----CchhHHHHHHHHHHHHHHhh
Confidence 56677777778877766654
No 177
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.60 E-value=0.0031 Score=56.41 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+.... ...+.. ...+..++.++...+++..|+..++.+.+ .. ...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l-------~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~-~~~ 70 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLE-------AKKYNS-------PYIYNRRAVCYYELAKYDLAQKDIETYFS----KV-NAT 70 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-------HTTCCC-------STTHHHHHHHHHHTTCHHHHHHHHHHHHT----TS-CTT
T ss_pred HHHHHHhcCHHHHHHHHHHHH-------HhCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cc-Cch
Confidence 444677888888888775332 111111 12344556666677888888777766543 11 111
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
..+......+|.+....|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++
T Consensus 71 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 71 ---KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp ---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred ---hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2234566788888888888888888888887641 111 12344555555555555555554443
Q ss_pred H
Q 016307 350 A 350 (392)
Q Consensus 350 a 350 (392)
+
T Consensus 134 a 134 (272)
T 3u4t_A 134 Q 134 (272)
T ss_dssp G
T ss_pred H
Confidence 3
No 178
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.58 E-value=0.024 Score=48.46 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=62.2
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
...+..++.++...++...++.+++...+. .+.. ......++.+....|++++|+..|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKN-------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK---- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----Cccc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----
Confidence 345556677777788888888888766542 2211 3467788999999999999999999988742
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIK 352 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~ 352 (392)
+. ....+..++.++..+ |++++|+..|++++.
T Consensus 73 ---~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 ---PD-------SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ---TT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ---CC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 11 122334455555555 555555555554443
No 179
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.57 E-value=0.07 Score=48.42 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=90.0
Q ss_pred HhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
+..+...+..|++++|...+..... .. +.....+..++.++...++...|+..++.+.+. .+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~-------~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~ 86 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQ-------AA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DP 86 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH-------hC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----Cc
Confidence 3445556788899998887753321 11 112334455666777778888888877766443 22
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------------------
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD-------------------------------------- 308 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~-------------------------------------- 308 (392)
.. ......++.+....|++++|+..|+++++....
T Consensus 87 ~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 87 KD-------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 11 235567778888888888888888887653111
Q ss_pred ----HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 016307 309 ----AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 309 ----~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
+....+. ....+..+|.++..+|++++|+..|++++.+ .|.+......++.++..
T Consensus 160 ~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 160 LLHAALEMNPN-------DAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGATLAN 218 (327)
T ss_dssp HHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHH
Confidence 0000111 1234556777788888888888877776643 34444444555544443
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.052 Score=43.08 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
.+...+..+...+++..|+.+++...+ +.+.. .........++.+....+++++|+..|++++++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 94 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------- 94 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------
Confidence 455566677778888888888876642 22221 234567888999999999999999999999875
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
.+.. ...+..+|.++..+|++++|+..|++++.+ .|.+..+...+..+
T Consensus 95 ~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 95 DGGD-------VKALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNI 142 (148)
T ss_dssp TSCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHH
T ss_pred CccC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHH
Confidence 2221 446778899999999999999998888764 45665555554443
No 181
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.54 E-value=0.044 Score=45.00 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=92.7
Q ss_pred HHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhh
Q 016307 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+...... .+.. ...+..++.++...++...+..+++...+. .+..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~--- 75 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDA-------DAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD----APDN--- 75 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCT-------TSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHhcCHHHHHHHHHHHHHh-------CccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---
Confidence 356678888888777533211 1111 234555666666778888888877766433 2211
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
......++.+....|++++|+..|+++++. .+. ....+..+|.++..+|++++|+..|++++
T Consensus 76 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 76 ----VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-------NPI-------NFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CcH-------hHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 235677888888889999999999888865 111 13456778888888999999988888876
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 352 KRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 352 ~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.. .|.+......++.++..++
T Consensus 138 ~~------~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 138 GL------RPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HH------CTTCHHHHHHHHHHHHHTT
T ss_pred hc------CccchHHHHHHHHHHHHcC
Confidence 54 3555556666666555443
No 182
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.53 E-value=0.017 Score=57.42 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHhhhhhhhhhcCCc-hhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 016307 232 AVLGMLGDCCRAMGDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~-h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~ 310 (392)
..+..++.++...+++ .+|+..++++.+. .+. .......+|.++...|++++|+..|++++++
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----- 166 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKL----EPE-------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----- 166 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 3556677777788898 8888888876543 222 2347789999999999999999999999865
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 016307 311 KRHSNVPSQVLDVAVSLAKVADVDRSI---------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~---------g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.+. ...+.++|.++..+ |++++|+..|+++++ .+|.+.....+++.++..+
T Consensus 167 --~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 167 --CKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------MDVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp --CCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHH
T ss_pred --CCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHH
Confidence 121 35678899999988 777777766666655 4788888888888888766
No 183
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.51 E-value=0.022 Score=57.19 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=85.5
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..++.++...++..+|..+++...+.....+..- .........++.+....|++++|+..|++++++.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 546 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE----KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------- 546 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS----GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch----hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 33445566677888888888887766655432211 1124577899999999999999999999998762
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLF 374 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~ 374 (392)
+. ....+..++.++..+|++++|++.|++++++ +|++......++.+|
T Consensus 547 p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 TN-------DANVHTAIALVYLHKKIPGLAITHLHESLAI------SPNEIMASDLLKRAL 594 (597)
T ss_dssp SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTT
T ss_pred CC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHH
Confidence 22 1457788999999999999999999887764 677777666666544
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.50 E-value=0.026 Score=43.92 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred cCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH
Q 016307 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl 323 (392)
.+++.+|+..++.+.+ +... .+........+|.+...+|++++|+..|++++++ .+.+
T Consensus 3 ~g~~~~A~~~~~~al~----~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~------- 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA----SGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH------- 60 (117)
T ss_dssp ----CCCHHHHHHHHS----SCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------
T ss_pred CCcHHHHHHHHHHHHH----cCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------
Confidence 3555667777665533 1110 2344567889999999999999999999999876 2322
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...+.++|.++..+|++++|+..|++++..
T Consensus 61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 61 QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999998765
No 185
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.50 E-value=0.022 Score=48.72 Aligned_cols=99 Identities=9% Similarity=0.005 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcc-h-----hHHHHHHHHHHHHHHhcCCHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-V-----LDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~-~-----~dla~sl~~la~~~~~~g~~~~A~~ 345 (392)
..........+|.+....|++++|+..|.+++++.... ...... . .-.+..+.++|.++..+|++++|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34455677889999999999999999999998753221 100000 0 0113567889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 346 GFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 346 ~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.|++++.+ +|.+.....+++.++..++.+
T Consensus 110 ~~~~al~~------~p~~~~~~~~lg~~~~~~~~~ 138 (198)
T 2fbn_A 110 HASKVLKI------DKNNVKALYKLGVANMYFGFL 138 (198)
T ss_dssp HHHHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh------CcccHHHHHHHHHHHHHcccH
Confidence 99998875 677777788888877766543
No 186
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.49 E-value=0.018 Score=56.78 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 291 ~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.+.++...|.+++...+..++..+.+......++..+..+|.++..+|++++|+..|++++.+
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 444555566666766667776667665555566778888999999999999999988877653
No 187
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.47 E-value=0.043 Score=50.46 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=74.1
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~-----~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
.+..++.++...++...|+..++...+. .+.......... ...-.++.+....|++++|+..|+++++..
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 264 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3445556666677777777776655432 222222111111 112344777888899999999998887642
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+.. .......+..+|.++..+|++++|+..|++++++ +|.+.....+++.++..++
T Consensus 265 ------~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 265 ------PSV---AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp ------CSS---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred ------CCc---hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcC
Confidence 111 1122334556777777778877777777776654 5556666666666655443
No 188
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.47 E-value=0.037 Score=48.09 Aligned_cols=116 Identities=9% Similarity=0.110 Sum_probs=84.1
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++.++...++...|+.+++...+. .+. .......++.+....|++++|+..|++++++.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 121 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALEL----DSS-------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----- 121 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCc-------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence 45566777777888888888888766543 221 23466788999999999999999999988752
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+.. ...+..+|.++..+|++++|+..|++++.+ .|.+..+...++.++..++
T Consensus 122 --~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 122 --MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp --CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHT
T ss_pred --CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHcC
Confidence 111 335678899999999999999999888765 4455556666666655544
No 189
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.46 E-value=0.023 Score=51.75 Aligned_cols=124 Identities=20% Similarity=0.175 Sum_probs=88.0
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~ 311 (392)
..+..++.++...++...|+.+++...+. .+. .......++.+....|++++|+..|++++++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----- 236 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL----RPD-------DAQLWNKLGATLANGNRPQEALDAYNRALDIN----- 236 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 45566777777888888888888766433 221 13467889999999999999999999998752
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCc------hHHHHHHHHHHHHHHHhc
Q 016307 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE------EAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~------~~~l~~~l~~~~~~l~~~ 380 (392)
+. ....+..+|.++..+|++++|+..|++++.+......... +......++.++..++.+
T Consensus 237 --~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 237 --PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred --CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 11 1346778999999999999999999999876533211000 455666777777666543
No 190
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.42 E-value=0.038 Score=50.83 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=81.1
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+...+..|++++|...+..... .. |.....+..++.++...++...|+..++...+. .+..
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~-------~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~- 70 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVD-------GD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDF- 70 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-------hC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCc-
Confidence 3446778899998888763321 11 222345666777888889999998888776543 2222
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH-----HHHHHHHHHHHHhcCCHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV-----AVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl-----a~sl~~la~~~~~~g~~~~A~ 344 (392)
......++.+....|++++|+..|++++++..... ........+ ......+|.++..+|++++|+
T Consensus 71 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 71 ------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ----EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCccc----ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 24678899999999999999999999876421000 000000011 111223356666666666666
Q ss_pred HHHHHHHH
Q 016307 345 DGFQEAIK 352 (392)
Q Consensus 345 ~~~~eal~ 352 (392)
..|++++.
T Consensus 141 ~~~~~~~~ 148 (359)
T 3ieg_A 141 TFLDKILE 148 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 191
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.40 E-value=0.026 Score=55.68 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++.+....|++++|+..|++++++ .+.. ...+..+|.++..+|++++|+..|++++++
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 373 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK--- 373 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 35566777777777777777777777653 1211 235677888888889988888888877654
Q ss_pred hhcCCchHHHHHHHHHHHHHHHh
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.|.+..+..+++.++..++.
T Consensus 374 ---~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 374 ---FPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTC
T ss_pred ---CCCChHHHHHHHHHHHHhCC
Confidence 56777777777777766543
No 192
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.38 E-value=0.024 Score=45.78 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+.-......++.+....|++++|+..|++++.+ .+.+ ...+..+|.++..+|++++|+..|++++.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334456678899999999999999999998864 2322 44577899999999999999999988876
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 353 RLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 353 ~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+ +|.+.....+++.++..++.
T Consensus 81 ~------~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 81 M------DINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp H------CTTCTHHHHHHHHHHHHTTC
T ss_pred c------CCCCcHHHHHHHHHHHHcCC
Confidence 4 56777777777777766654
No 193
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.38 E-value=0.057 Score=51.87 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=92.5
Q ss_pred HhHHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
...+...+..|++++|...+...... . +.....+..++.++...++...|+..++.+.+. .+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~-------~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p 91 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDG-------D-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KM 91 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------C-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-------C-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CC
Confidence 34455577889999998887633211 1 222345666777777888999998888876543 22
Q ss_pred CchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCC---cchhHH-----HHHHHHHHHHHHhcC
Q 016307 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP---SQVLDV-----AVSLAKVADVDRSIG 338 (392)
Q Consensus 267 ~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~---~~~~dl-----a~sl~~la~~~~~~g 338 (392)
. .......++.+....|++++|+..|++++++ .+... .....+ ......+|.++...|
T Consensus 92 ~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 92 D-------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 2356788999999999999999999998753 11111 111111 112334466666677
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 016307 339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 339 ~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~ 376 (392)
++++|+..|++++.+ .|.+......++.++..
T Consensus 158 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 158 DYTAAIAFLDKILEV------CVWDAELRELRAECFIK 189 (450)
T ss_dssp CHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHH
Confidence 777777777666542 34444444444444443
No 194
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.37 E-value=0.055 Score=41.59 Aligned_cols=109 Identities=22% Similarity=0.372 Sum_probs=70.7
Q ss_pred hhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
.++.++...++...+..+++...+. .+.. ......++.+....|++++|+..|+++++.. +.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~ 67 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PR 67 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CC
Confidence 3455555667777777777655432 1111 2355677888888899999999998887641 11
Q ss_pred CCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
....+..++.++..+|++++|+..|++++.+ .|.+......++.++.
T Consensus 68 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 68 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYY 114 (136)
T ss_dssp -------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH
Confidence 1334567888888899999998888877754 3444445555555544
No 195
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.37 E-value=0.055 Score=41.58 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
..........++.+....|++++|+..|+++++. .+. ....+..+|.++..+|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPA-------NAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3445567788899999999999999999998875 122 14467889999999999999999999887
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 352 KRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 352 ~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+ .|.+.....+++.++..++.
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 74 CI------DPAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HH------CTTCHHHHHHHHHHHHHTTC
T ss_pred hc------CccCHHHHHHHHHHHHHhCC
Confidence 64 56666677777776665543
No 196
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.37 E-value=0.029 Score=49.82 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 275 i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.......++.+....|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|+++++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPD-------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445566666666667777777666666653 111 122344455555555555555555555444
No 197
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.34 E-value=0.029 Score=44.34 Aligned_cols=81 Identities=7% Similarity=-0.017 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
-.++......|++++|+..|++++++ .+.+ +..+..+|.++..+|++++|+..|++++++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------ 80 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK-------EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML------ 80 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45677788889999999999998864 3332 456778999999999999999888877654
Q ss_pred CCchHHHHHHHHHHHHHHHhc
Q 016307 360 KPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 360 ~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+|++.....+++.++..++.+
T Consensus 81 ~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 81 DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCH
Confidence 677777777888877766553
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.34 E-value=0.014 Score=57.84 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.........++|.++...|++++|+..|.+++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445667888999999999999999999999998643221000000 0011133567889999999999999999999998
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 351 IKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 351 l~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+.+ +|.+.....+++.++..++.+
T Consensus 344 l~~------~p~~~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 344 LGL------DSANEKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc------CCccHHHHHHHHHHHHHccCH
Confidence 864 577888888888887766543
No 199
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.33 E-value=0.042 Score=45.96 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=88.7
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR----- 307 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~----- 307 (392)
....+|.++...|++.+|+..++++.+. .+.. ..+...++.+....|++++|+..|.+++....
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 75 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence 4556778888889999999988877543 2322 24667788888888888888888888765311
Q ss_pred ----------------------HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHH
Q 016307 308 ----------------------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG 365 (392)
Q Consensus 308 ----------------------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~ 365 (392)
.+....+. ....+..+|.++..+|++++|++.|++++++ +|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------~p~~~~ 142 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTV-------YADAYYKLGLVYDSMGEHDKAIEAYEKTISI------KPGFIR 142 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHhCCchhHHHHHHHHHHh------cchhhh
Confidence 01111111 1334567899999999999999998887654 788899
Q ss_pred HHHHHHHHHHHHHhc
Q 016307 366 LEQRVRFLFQLLVVS 380 (392)
Q Consensus 366 l~~~l~~~~~~l~~~ 380 (392)
...+++.++..++.+
T Consensus 143 ~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHCCCH
Confidence 999999998877654
No 200
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.32 E-value=0.042 Score=44.62 Aligned_cols=86 Identities=12% Similarity=0.002 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
........++.+....|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677889999999999999999999998751 21 1456788999999999999999999888765
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.|.+.....+++.++..++.
T Consensus 77 ------~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 77 ------DKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTC
T ss_pred ------CcccHHHHHHHHHHHHHhcc
Confidence 45666666777776665543
No 201
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.30 E-value=0.034 Score=41.98 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++.+....|++++|+..|++++... +.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 67 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--- 67 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh---
Confidence 456788889999999999999999988651 221 446788899999999999999999888765
Q ss_pred hhcCCchHHHHHHHHHHHHHHHh
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.|.+.....+++.++..++.
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTC
T ss_pred ---CcccHHHHHHHHHHHHHHhh
Confidence 56677777777777665543
No 202
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.30 E-value=0.025 Score=50.27 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 016307 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~ 308 (392)
.....+..++.++...++...|+..++.+.+. .+.. ......++.+....|++++|+..|++++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 106 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDM-------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Confidence 34556777888888889999998888876543 2222 246678899999999999999999999875
Q ss_pred HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.+.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 107 ----~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 107 ----DPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Cccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1221 346778899999999999999999888764
No 203
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.30 E-value=0.026 Score=46.42 Aligned_cols=124 Identities=17% Similarity=0.088 Sum_probs=87.1
Q ss_pred HHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhh
Q 016307 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+...... .+ .....+..++.++...++...+..+++..... .+..
T Consensus 51 ~~~~~~~~~~A~~~~~~~~~~-------~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~--- 109 (186)
T 3as5_A 51 AYVKTGAVDRGTELLERSLAD-------AP-------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA----NPIN--- 109 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHcCCHHHHHHHHHHHHhc-------CC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CcHh---
Confidence 345678888887766532211 11 11234455666777778888888887766443 2211
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
......++.+....|++++|+..|+++++.. +. ....+..+|.++..+|++++|+..|++++
T Consensus 110 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 110 ----FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PN-------EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------cc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2456788999999999999999999988652 21 14567889999999999999999999998
Q ss_pred HHH
Q 016307 352 KRL 354 (392)
Q Consensus 352 ~~l 354 (392)
.+.
T Consensus 172 ~~~ 174 (186)
T 3as5_A 172 ELD 174 (186)
T ss_dssp HHH
T ss_pred HcC
Confidence 765
No 204
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.29 E-value=0.025 Score=50.36 Aligned_cols=118 Identities=10% Similarity=0.030 Sum_probs=85.7
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..++.++...++...|+.+++...+. .+.... ....++.+....|++++|+..|+++++. ...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~ 69 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFSK-----VNA 69 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCc
Confidence 445666777788888998888776432 332222 5677888999999999999999998762 111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.. -.+..+..+|.++..+|++++|+..|++++++ +|.+.....+++.++..++.
T Consensus 70 ~~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 70 TK------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp TT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTC
T ss_pred hh------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHccC
Confidence 11 13556789999999999999999999988873 56666777777777766554
No 205
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.28 E-value=0.088 Score=48.43 Aligned_cols=72 Identities=21% Similarity=0.106 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~ 368 (392)
.|++++|+..|+++++. .+.. ...+..+|.++..+|++++|+..|++++. .+|++...+.
T Consensus 179 ~~~~~eA~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~------~~p~~~~~l~ 238 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK-------CSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEALD------KDSGHPETLI 238 (291)
T ss_dssp TTHHHHHHHHHHHHHHH-------SCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHH
Confidence 35666666666665543 2321 44677888888888998888888877764 4577777788
Q ss_pred HHHHHHHHHHhc
Q 016307 369 RVRFLFQLLVVS 380 (392)
Q Consensus 369 ~l~~~~~~l~~~ 380 (392)
+++.++..++..
T Consensus 239 ~l~~~~~~~g~~ 250 (291)
T 3mkr_A 239 NLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 877777666544
No 206
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.28 E-value=0.031 Score=43.11 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|+++++.. +. ....+..+|.++..+|++++|+..|++++.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 4567889999999999999999999998752 21 145678899999999999999999999998765
Q ss_pred HhhcC-CchHHHHHHHHHHHHHHH
Q 016307 356 SLTLK-PEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 356 ~l~~~-~~~~~l~~~l~~~~~~l~ 378 (392)
..... +.......+++.++..++
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~ 93 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEE 93 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHhc
Confidence 43111 111445555666655544
No 207
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.025 Score=45.06 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++......|++++|+..|++++++ .+. ..+....+.++|.++..+|++++|+..|++++.+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 94 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-------DAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-- 94 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------ccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 456778899999999999999999998863 121 1134567889999999999999999999888765
Q ss_pred HhhcCCchHHHHHHHHHHHHHHHh
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGR 114 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTC
T ss_pred ----CccCHHHHHHHHHHHHHcCC
Confidence 56677777777777766554
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.24 E-value=0.046 Score=42.10 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++.+....|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|++++.+...
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46788999999999999999999999875 222 2446788999999999999999999999987654
Q ss_pred hhcCCchHHHHHHHHHHHHHHHh
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.. +......+...+..++.
T Consensus 86 ~~----~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 86 RG----DQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HT----CHHHHHHHHHHHHHHHH
T ss_pred cc----cHHHHHHHHHHHHHhcc
Confidence 32 23334444444444443
No 209
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.20 E-value=0.014 Score=55.23 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=79.9
Q ss_pred HHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHh-----CCCCc-hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 016307 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMK-----LPMDD-LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 228 ~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~-----L~~~~-~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~ 301 (392)
+.....+...+..+...+++..|+..|+.+...... ..... ............+++.++..++++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334556777888888899999999999877543211 00000 011122224778999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 302 sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
++++ .+. ....+.++|.++..+|++++|+..|++++++ +|.+..+...++.+
T Consensus 256 al~~-------~p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l 307 (338)
T 2if4_A 256 VLTE-------EEK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRAL 307 (338)
T ss_dssp HHHH-------CTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHH
Confidence 9875 222 2456889999999999999999888887654 34444444444443
No 210
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.16 E-value=0.048 Score=48.71 Aligned_cols=169 Identities=13% Similarity=-0.003 Sum_probs=95.1
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhh--------cCCchhhhcHHHHHHHHH
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA--------MGDADAAVAYFADSVEFL 261 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~--------~h~~h~a~~~~e~~~e~~ 261 (392)
+.-.+..|++++|...+.... ...+.+. .....+..++.+... .++...|+..++...+..
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l-------~~~p~~~----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFI-------QIYQIDP----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-------HHCTTCT----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcHHHHHHHHHHHH-------HHCCCCc----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 333567788888888775221 1111110 112345556666655 677777777777654321
Q ss_pred HhCC------CCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 016307 262 MKLP------MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDR 335 (392)
Q Consensus 262 ~~L~------~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~ 335 (392)
-.-. .....+...+....-.++.++...|++++|+..|+++++.. +... .....+.++|.++.
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-------PDTP----WADDALVGAMRAYI 196 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTST----THHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCCc----hHHHHHHHHHHHHH
Confidence 1000 00011223334445778999999999999999999988642 2211 13445677777777
Q ss_pred hc----------CCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhcccc
Q 016307 336 SI----------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVSSLD 383 (392)
Q Consensus 336 ~~----------g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~~~~ 383 (392)
.+ |++++|+..|+++++.. ..++........+..++..++.+...
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQIF---PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 66 66666666665554322 22232344555577777777666443
No 211
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.15 E-value=0.04 Score=49.47 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhh----cCCchhhhcHHHHHHHHHHhCCCC
Q 016307 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA----MGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 192 ~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~----~h~~h~a~~~~e~~~e~~~~L~~~ 267 (392)
-.+..|++++|...+....+ +.+...+..++.++.. .++..+|+.+++.+.+. .
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~----------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~-- 72 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACD----------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N-- 72 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred HHHhCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence 35667788888877753322 0111233445555545 56666666666554322 0
Q ss_pred chhhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 016307 268 DLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 268 ~~e~~~~i~~~~~~l~~l~~~----~g~l~~A~~~~e~sl~ 304 (392)
-..+...++.+... .+++++|+..|+++++
T Consensus 73 -------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 12344556666666 6666666666666554
No 212
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.15 E-value=0.024 Score=44.15 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
........++.+....|++++|+..|+++++. .+.. ...+..+|.++..+|++++|+..|++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-------NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-------CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34557788999999999999999999998854 2221 456788999999999999999999888864
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 354 LESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 354 le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.|.+.....+++.++..++.
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTC
T ss_pred ------CCCchHHHHHHHHHHHHHhh
Confidence 56677777777777665543
No 213
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.14 E-value=0.029 Score=43.77 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=71.5
Q ss_pred hhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016307 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~ 315 (392)
..+.+....+++..|+..++..... .+.. .......-.+|.+....|++++|+..|+++++.. +.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~ 71 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL----YPNG----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PT 71 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSSS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH----CCCC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CC
Confidence 3455566778888888887765432 1211 1223466789999999999999999999988652 22
Q ss_pred CCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.. .....+.++|.++..+|++++|+..|++++...
T Consensus 72 ~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 72 HD----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp ST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Cc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 11 234567889999999999999999988877643
No 214
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.12 E-value=0.014 Score=50.21 Aligned_cols=134 Identities=15% Similarity=0.021 Sum_probs=92.3
Q ss_pred HHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhh
Q 016307 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+.... . + ....+..++.++...+++..|+..++.+.+. .+.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~-------~--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~---- 69 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ-------D--P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKH---- 69 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS-------S--C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT----
T ss_pred HHHHhCCHHHHHHHHHHHc-------C--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc----
Confidence 4567788888888776441 0 0 1235666777888889999999888877543 121
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~--~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.......+|.+....|++++|+..|++++++........... ..........+.++|.++..+|++++|+..|++
T Consensus 70 ---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 70 ---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 235678999999999999999999999987532110000000 001113456788999999999999999999988
Q ss_pred HHHH
Q 016307 350 AIKR 353 (392)
Q Consensus 350 al~~ 353 (392)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 8765
No 215
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.10 E-value=0.019 Score=52.61 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....+|.+....|++++|+..|.+++++ .+. ....+.++|.++..+|++++|+..|+++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 66 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE---- 66 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence 35566777777788888888888877764 121 134556677777777777766666665543
Q ss_pred hhcCCchHHHHHHHHHHHHHHH
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.+|.+.....+++.++..++
T Consensus 67 --~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 67 --LDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp --SCTTCHHHHHHHHHHHHHTT
T ss_pred --hCCCCHHHHHHHHHHHHHcC
Confidence 35566666666666555444
No 216
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.08 E-value=0.057 Score=49.50 Aligned_cols=123 Identities=7% Similarity=-0.012 Sum_probs=83.6
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN-------- 304 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~-------- 304 (392)
.+...+......++...|+..++...+. .+.. ..+...++.+....|++++|+..|++++.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQL----SNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 4444555666778888888887766432 2322 24667888999999999999998888633
Q ss_pred -------------------HHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCch--
Q 016307 305 -------------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE-- 363 (392)
Q Consensus 305 -------------------~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~-- 363 (392)
..+.++...+. -...+.++|.++..+|++++|+..|++++.. +|..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~ 254 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGG
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccc
Confidence 11122222332 2345678899999999999999888777654 4554
Q ss_pred HHHHHHHHHHHHHHHh
Q 016307 364 AGLEQRVRFLFQLLVV 379 (392)
Q Consensus 364 ~~l~~~l~~~~~~l~~ 379 (392)
.....+++.++..++.
T Consensus 255 ~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 255 GQTRXTFQEILAALGT 270 (287)
T ss_dssp GHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHcCC
Confidence 6677778888877664
No 217
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.08 E-value=0.051 Score=41.78 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=82.1
Q ss_pred HHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhh
Q 016307 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+..... ..+.. ...+..++.++...++...+..+++..... .+..
T Consensus 11 ~~~~~~~~~A~~~~~~~~~-------~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~---- 68 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALE-------LDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRS---- 68 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC----
T ss_pred HHHcCcHHHHHHHHHHHHH-------cCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCCc----
Confidence 4556788888776653211 11111 223444566666678888888887765432 2211
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
......++.+....|++++|+..|+++++.. +.. ...+..++.++..+|++++|+..|++++.
T Consensus 69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 2355678889999999999999999988641 111 33567789999999999999999998876
Q ss_pred H
Q 016307 353 R 353 (392)
Q Consensus 353 ~ 353 (392)
+
T Consensus 132 ~ 132 (136)
T 2fo7_A 132 L 132 (136)
T ss_dssp H
T ss_pred c
Confidence 4
No 218
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.03 E-value=0.034 Score=49.92 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=47.1
Q ss_pred HHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 016307 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNV 305 (392)
Q Consensus 231 ~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~----~g~l~~A~~~~e~sl~~ 305 (392)
...+..++.++...++..+|+.+++.+.+ ... ..+...++.+... .+++++|+..|+++++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD------LKE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCC-------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 34556677777778888888888877654 111 1366789999999 99999999999998864
No 219
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.91 E-value=0.095 Score=39.76 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
......++.+....|++++|+..|++++... +. ....+..++.++..+|++++|+..|++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 3466788889999999999999999988651 21 1346778899999999999999999888754
Q ss_pred HhhcCCchHHHHHHHHHHHHHHH
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
.|.+......++.++..++
T Consensus 73 ----~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 73 ----DPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp ----CTTCHHHHHHHHHHHHHTT
T ss_pred ----CCccHHHHHHHHHHHHHhc
Confidence 4556666666666665544
No 220
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.91 E-value=0.022 Score=42.73 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
....++.+....|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 69 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PE-------ESKYWLMKGKALYNLERYEEAVDCYNYVINV---- 69 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 34577888889999999999999988752 22 1345678999999999999999988888754
Q ss_pred hcCCc--hHHHHHHHHHHHHHH
Q 016307 358 TLKPE--EAGLEQRVRFLFQLL 377 (392)
Q Consensus 358 ~~~~~--~~~l~~~l~~~~~~l 377 (392)
.|. +.....+++.++..+
T Consensus 70 --~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 70 --IEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp --SCCTTCHHHHHHHHHHHTTC
T ss_pred --CcccchHHHHHHHHHHHHHH
Confidence 455 667777777776554
No 221
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.84 E-value=0.013 Score=46.50 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=67.9
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
.+......+++..|+..++.+... .+.. ......+|.+....|++++|+..|++++++ .+..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~----~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~ 84 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKD 84 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Confidence 344555677888888877766432 2322 346678999999999999999999998875 2322
Q ss_pred CcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...+..+|.++..+|++++|+..|++++++
T Consensus 85 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 -------IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999988887754
No 222
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.83 E-value=0.018 Score=44.85 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 016307 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~ 368 (392)
+|++++|+..|++++++. .. -.+....+.++|.++..+|++++|+..|++++++ +|.+..+..
T Consensus 3 ~g~~~~A~~~~~~al~~~-------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG-------LQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSC-------CC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC-------CC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHH
Confidence 567788888888887631 00 1244667889999999999999999999988765 677777777
Q ss_pred HHHHHHHHHHh
Q 016307 369 RVRFLFQLLVV 379 (392)
Q Consensus 369 ~l~~~~~~l~~ 379 (392)
+++.++..++.
T Consensus 66 ~l~~~~~~~g~ 76 (117)
T 3k9i_A 66 FYAMVLYNLGR 76 (117)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 77777766654
No 223
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.71 E-value=0.021 Score=42.88 Aligned_cols=96 Identities=20% Similarity=0.099 Sum_probs=70.7
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..++.++...++...|+.+++.+.+. .+.. ......++.+....|++++|+..|++++++ .
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~ 70 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL----DPEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINV-------I 70 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------C
Confidence 445566777788888888888766543 2222 235678899999999999999999998865 1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIK 352 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~ 352 (392)
+. ......+..+|.++..+ |++++|++.|++++.
T Consensus 71 ~~-----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 71 ED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CC-----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred cc-----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 21 00244678899999999 999999988887754
No 224
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.67 E-value=0.092 Score=38.95 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016307 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 281 ~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~-sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~ 359 (392)
+.+.+....|++++|+..|++++++ .+.. .. .+.++|.++..+|++++|+..|++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-------EPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------ 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------CSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 3566777889999999999998865 2221 33 6788999999999999999999988854
Q ss_pred CCchHHHH--HHHHHHHHHH
Q 016307 360 KPEEAGLE--QRVRFLFQLL 377 (392)
Q Consensus 360 ~~~~~~l~--~~l~~~~~~l 377 (392)
+|.+.... ..+..++..+
T Consensus 65 ~p~~~~~~~~~~~~~a~~~~ 84 (99)
T 2kc7_A 65 NPDSPALQARKMVMDILNFY 84 (99)
T ss_dssp CTTSTHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 45555444 4444444443
No 225
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.66 E-value=0.0035 Score=48.59 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=27.0
Q ss_pred CceeccccccccccCcee--ccccCcchHHhHhc-CC
Q 016307 88 GPLSCMICQALLFECSKC--TPCSHVYCKACISR-FK 121 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~--~~C~h~fC~~Ci~~-~~ 121 (392)
+++.|+||.+.+..+++. +.|+|+||..|+.. +.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 457899999753326676 99999999999997 54
No 226
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.60 E-value=0.043 Score=55.42 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=92.0
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+.... ... +.+...+..++.++...++..+|+..++++.+. .+..
T Consensus 30 g~~~~~~g~~~~A~~~~~~al-------~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~- 90 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRGL-------ALH-------PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA----APEH- 90 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-------TTS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------HhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC-
Confidence 334566788888887765322 111 222345667788888889999998888877543 2222
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhc---CCHHHHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI---GNEDVAVDG 346 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~---g~~~~A~~~ 346 (392)
......++.++...|++++|+..|++++++ .+. ....+.+++.++..+ |++++|++.
T Consensus 91 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 91 ------PGIALWLGHALEDAGQAEAAAAAYTRAHQL-------LPE-------EPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 346788999999999999999999999876 222 134678899999999 999999999
Q ss_pred HHHHHHHH
Q 016307 347 FQEAIKRL 354 (392)
Q Consensus 347 ~~eal~~l 354 (392)
|+++++.-
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99998764
No 227
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.27 E-value=0.44 Score=39.31 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHH
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRD 308 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l-~~~~g~l--~~A~~~~e~sl~~~~~ 308 (392)
..+..++.++...+++..|+.+++.+.... +.. ......++.+ ....|++ ++|+..|++++++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR----GEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence 356667778888899999998888775442 212 2356778888 6678888 9999999998875
Q ss_pred HhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
.+.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 111 ----~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 ----DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2221 345678999999999999999999888754
No 228
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.23 E-value=0.27 Score=42.87 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=91.7
Q ss_pred HHHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCc
Q 016307 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~ 268 (392)
.+...+..|++++|...+..... ..+.. +.....+.+++.++...+++..|+..++...+. .+..
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~-------~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~ 74 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDN-------RYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTH 74 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-------HCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------hCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCC
Confidence 34557888999999888763221 11111 111235667788888899999998888766432 2222
Q ss_pred hhhhHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCcch---h------
Q 016307 269 LEIIHTLSVSLNKIGDLKYY------------------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV---L------ 321 (392)
Q Consensus 269 ~e~~~~i~~~~~~l~~l~~~------------------~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~---~------ 321 (392)
.. +..+.-.+|.+... .|++++|+..|++.++ ..+...... .
T Consensus 75 ~~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 75 PN----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR-------GYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp TT----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT-------TCTTCTTHHHHHHHHHHHH
T ss_pred Cc----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH-------HCcCChhHHHHHHHHHHHH
Confidence 21 12233344444332 4566666666666554 333332111 0
Q ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 322 -DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 322 -dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
.++...-.+|.++..+|++.+|+..|+++++.. ...+.....+.+++.++..++..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCc
Confidence 111112356778888999999998888877653 22222234566677766666543
No 229
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.22 E-value=0.11 Score=43.41 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.....++.+....|++++|+..|++++++ .+... -...+..++.++..+|+.++|+..|++++..+
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~-----~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKV-------NLGAQ-----DGEVKKTFMDILSALGQGNAIASKYRRQLYSI 174 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTTT-----TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------CcccC-----hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 45567788888888888888888877643 22110 12345678888888888888888888887654
No 230
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.21 E-value=0.0046 Score=58.21 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=34.2
Q ss_pred CceeccccccccccC---c--e--eccccCcchHHhHhcCC---------------CCCCCCccccc
Q 016307 88 GPLSCMICQALLFEC---S--K--CTPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~---p--~--~~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
+...|+||..++.+. | + ...|+|.|-..|+.+|. .||.||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345699999987641 2 1 23799999999999983 39999997764
No 231
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.13 Score=50.13 Aligned_cols=86 Identities=13% Similarity=-0.001 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~---~g~~~~A~~~~~eal~~l 354 (392)
....++.+....|++++|+..|++++++........ ..+..+..+|.++.. +|++++|+..|++++.+
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~- 444 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL- 444 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-
Confidence 556778888888999999999998887533211000 012245566666666 67777777666666543
Q ss_pred HHhhcCCchHHHHHHHHHHHHHH
Q 016307 355 ESLTLKPEEAGLEQRVRFLFQLL 377 (392)
Q Consensus 355 e~l~~~~~~~~l~~~l~~~~~~l 377 (392)
.|.+......++.++..+
T Consensus 445 -----~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 445 -----DPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp -----CTTCHHHHHHHHHHHHHT
T ss_pred -----CcccHHHHHHHHHHHHHh
Confidence 344444444444444433
No 232
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.20 E-value=0.056 Score=50.99 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcch----hH-HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016307 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----LD-VAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 274 ~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~----~d-la~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
.....+..+|......|++++|+..|++++++......- ...... .. ....+.++|.++..+|++++|+..|+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF--QLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH--TCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh--hhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567888999999999999999999999864322100 000000 00 11367889999999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 349 EAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 349 eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+++.+ +|.+.....+++.++..++.+
T Consensus 255 ~al~~------~p~~~~a~~~lg~a~~~~g~~ 280 (338)
T 2if4_A 255 IVLTE------EEKNPKALFRRGKAKAELGQM 280 (338)
T ss_dssp HHHHH------CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHh------CCCCHHHHHHHHHHHHHcCCH
Confidence 88764 677888888888877665543
No 233
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.16 E-value=0.085 Score=40.96 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016307 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~ 358 (392)
.-.++......|++++|+..|+++++. .+... .....+-.+|.++..+|++++|+..|++++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~----- 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL-------YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR----- 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----
Confidence 346778888899999999999988764 22211 22356778999999999999999999887764
Q ss_pred cCCch---HHHHHHHHHHHHHHHh
Q 016307 359 LKPEE---AGLEQRVRFLFQLLVV 379 (392)
Q Consensus 359 ~~~~~---~~l~~~l~~~~~~l~~ 379 (392)
.|.+ .....+++.++..++.
T Consensus 69 -~p~~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 69 -YPTHDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp -CTTSTTHHHHHHHHHHHHHHTTC
T ss_pred -CCCCcccHHHHHHHHHHHHHcCC
Confidence 3444 5566667776665443
No 234
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.07 E-value=0.027 Score=58.66 Aligned_cols=125 Identities=12% Similarity=0.008 Sum_probs=79.3
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR----- 307 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~----- 307 (392)
.+...+.++...+++..|+..++++.+.. +.. ......+|.++...|++++|+..|++++++.-
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 503 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV----GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP 503 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC----cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 34445566667788888877777664331 222 34677899999999999999999999987421
Q ss_pred --------HHhhcCCCCCcchhHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 016307 308 --------DAVKRHSNVPSQVLDV--------AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVR 371 (392)
Q Consensus 308 --------~~~~~~~~~~~~~~dl--------a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~ 371 (392)
...++..+ ...++. +..+.++|.++..+|++++|+..|++++ ..+|.+.....+++
T Consensus 504 ~~~lg~~~~~~g~~~~--~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 504 KLALAATAELAGNTDE--HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP------PTSRHFTTARLTSA 575 (681)
T ss_dssp HHHHHHHHHHHTCCCT--TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC------TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHH--HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc------ccCcccHHHHHHHH
Confidence 11122222 222222 2345677888888888877776665543 45677777777777
Q ss_pred HHHHH
Q 016307 372 FLFQL 376 (392)
Q Consensus 372 ~~~~~ 376 (392)
.++..
T Consensus 576 ~~~~~ 580 (681)
T 2pzi_A 576 VTLLS 580 (681)
T ss_dssp HHTC-
T ss_pred HHHHc
Confidence 66533
No 235
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.00 E-value=0.015 Score=57.90 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
....++.+....|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|++++++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 69 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL---- 69 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 3455666777789999999999999976 222 2667899999999999999999999988765
Q ss_pred hcCCchHHHHHHHHHHHHHHHh
Q 016307 358 TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+|.+.....+++.++..++.
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTC
T ss_pred --CCCCHHHHHHHHHHHHHcCC
Confidence 77888888888887776654
No 236
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.95 E-value=0.13 Score=43.23 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCchHHHHHHHH
Q 016307 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRVR 371 (392)
Q Consensus 296 ~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~---~~A~~~~~eal~~le~l-~~~~~~~~l~~~l~ 371 (392)
...|+++++..+.+++..+.. +..+.++|.++..++++ ..|++.+++|+..+++. ..+|..+....+++
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 445666666666666667764 44566666666655443 46778899999999887 88999999999999
Q ss_pred HHHHHHHh
Q 016307 372 FLFQLLVV 379 (392)
Q Consensus 372 ~~~~~l~~ 379 (392)
.+|..++.
T Consensus 88 ~ay~~lg~ 95 (158)
T 1zu2_A 88 NAYTSFAF 95 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99987763
No 237
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.91 E-value=0.18 Score=41.83 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=71.4
Q ss_pred cCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHH
Q 016307 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dl 323 (392)
.++...|+..++..... .+.. ......++.+....|++++|+..|++++++. +.+
T Consensus 23 ~~~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~------- 77 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA----NPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN------- 77 (177)
T ss_dssp ----CCCCHHHHHHHHH----CCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC-------
T ss_pred ccCHHHHHHHHHHHHHh----CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC-------
Confidence 45556666666554322 2222 2466789999999999999999999998763 211
Q ss_pred HHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 324 AVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 324 a~sl~~la~~-~~~~g~~--~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
...+..+|.+ +..+|++ ++|+..|++++.+ +|.+.....+++.++..++.
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 130 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQAN 130 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccc
Confidence 3456778888 7788998 9999888877764 56677777777777665543
No 238
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.69 E-value=0.43 Score=40.04 Aligned_cols=88 Identities=11% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDL---QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG----NEDVAVDGFQE 349 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l---~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g----~~~~A~~~~~e 349 (392)
..+.++|.+...++++ .+|+..|++++...+++++-.+.. +..+.++|.++..+| ++..|...|++
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e 109 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------DEAVWCIGNAYTSFAFLTPDETEAKHNFDL 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence 3556666666665443 344555556666555555556654 445667777776664 34555555666
Q ss_pred HHHHHHHh-hcCCchHHHHHHHH
Q 016307 350 AIKRLESL-TLKPEEAGLEQRVR 371 (392)
Q Consensus 350 al~~le~l-~~~~~~~~l~~~l~ 371 (392)
|++.+++. ..+|++....+.+.
T Consensus 110 A~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 110 ATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666654 56777766555533
No 239
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.26 Score=47.88 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
...+..+|......|++++|+..|+++++.. +. ...+..+|.++..+|++++|+..|++++++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-------ED--------PVFYSNLSACYVSVGDLKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cc--------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence 3455666777777777777777777776642 11 334566667777777777777666666542
Q ss_pred HhhcCCchHHHHHHHHHHHHHHH
Q 016307 356 SLTLKPEEAGLEQRVRFLFQLLV 378 (392)
Q Consensus 356 ~l~~~~~~~~l~~~l~~~~~~l~ 378 (392)
+|.+......++.++..++
T Consensus 69 ----~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 69 ----KPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp ----CSCCHHHHHHHHHHHHHTT
T ss_pred ----ChHHHHHHHHHHHHHHHHh
Confidence 4555555555555554444
No 240
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.52 E-value=0.021 Score=39.78 Aligned_cols=43 Identities=23% Similarity=0.599 Sum_probs=33.3
Q ss_pred CceeccccccccccCceeccccC-----cchHHhHhcC------CCCCCCCcccc
Q 016307 88 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRF------KDCPLCGADIE 131 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~------~~CP~C~~~~~ 131 (392)
+...|.||+.... ++.++||.+ .|=..|+.+| ..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457999998754 677889653 6778999998 34999998764
No 241
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.42 E-value=0.29 Score=50.75 Aligned_cols=84 Identities=14% Similarity=-0.085 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~ 356 (392)
.....++.++...|++++|+..|++++++ .+. -+..+.++|.++..+|++++|+..|++++++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--- 496 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER-------VGW-------RWRLVWYRAVAELLTGDYDSATKHFTEVLDT--- 496 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------HCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------Ccc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46677888999999999999999998875 222 1456778888888889999888888887754
Q ss_pred hhcCCchHHHHHHHHHHHHHHHhc
Q 016307 357 LTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 357 l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+|++.....+++.++..++.+
T Consensus 497 ---~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 497 ---FPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp ---STTCSHHHHHHHHHHHHHTCC
T ss_pred ---CCCChHHHHHHHHHHHHcCCh
Confidence 345555555555555555443
No 242
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.03 E-value=0.26 Score=44.95 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-------
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA------- 350 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea------- 350 (392)
..-.++......|++++|+..|+++++. .+.+ ...+..+|.++..+|++++|+..|+++
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQL-------SNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence 4567788888899999999999998864 3332 346778889999999999999888774
Q ss_pred --------------------HHHHHHh-hcCCchHHHHHHHHHHHHHHHh
Q 016307 351 --------------------IKRLESL-TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 351 --------------------l~~le~l-~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+..+++. ..+|++.....+++.++...+.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR 234 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc
Confidence 3334443 7788888888888887765543
No 243
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.94 E-value=0.33 Score=40.36 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------------------HHHhhcCCCCCcchhHHHHHHH
Q 016307 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------------------------RDAVKRHSNVPSQVLDVAVSLA 328 (392)
Q Consensus 276 ~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~---------------------------~~~~~~~~~~~~~~~dla~sl~ 328 (392)
......++.+....|++++|+..|++++... +.++...+. -...+.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-------~~~~~~ 112 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-------NFELAC 112 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-------CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-------CHHHHH
Confidence 3456677777777777777777766643210 011111111 134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHhc
Q 016307 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE--EAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~--~~~l~~~l~~~~~~l~~~ 380 (392)
.+|.++..+|++++|+..|++++. .+|. +.....+++.++..++..
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHHhCCC
Confidence 789999999999999988887653 3443 345677777777766543
No 244
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.53 E-value=0.16 Score=46.70 Aligned_cols=112 Identities=14% Similarity=-0.009 Sum_probs=69.6
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~ 313 (392)
+..++.++...++..+|+..++. +... .....++.+...+|++++|+..|+++++..
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~-------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------- 160 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ---------GDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQD------- 160 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT---------CCSH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC---------CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------
Confidence 34455555556666666655543 1111 355677888999999999999999988651
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
+... ...++..+ ..+....|++++|+..|++++.. .|++..+..+++.++..++.
T Consensus 161 p~~~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 161 EDAT--LTQLATAW---VSLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp TTCH--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTC
T ss_pred cCcH--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCC
Confidence 2211 11121111 12233457888888777776653 67888888888887766554
No 245
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.58 E-value=0.8 Score=39.69 Aligned_cols=64 Identities=9% Similarity=-0.061 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...-.++.+....|++++|+..|+++++.. +... .....+..++.++..+|++++|+..|+.+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 344567788888899999999999887652 2211 234578899999999999999998776443
No 246
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.51 E-value=0.67 Score=35.20 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
...+..+|.++..+|++++|+..|++++.+ +|.+.....+++.++..++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCC
Confidence 456788999999999999999999988764 56677777777777766554
No 247
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.71 Score=34.26 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhc
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~~ 380 (392)
+..+..+|.++..+|++++|+..|++++.+ .|.+.....+++.++..++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~ 54 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEY 54 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCH
Confidence 456788999999999999999999998865 677788888888877766543
No 248
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.34 E-value=0.61 Score=40.25 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 322 DVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 322 dla~sl~~la~~~~~----~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
+.+.++.+||.++.. .+++++|+.+|+++.+. +.+.....+++.+|.
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-------SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-------SCTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 457888889999999 78888888888888653 223334555655554
No 249
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.26 E-value=0.47 Score=35.51 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=51.2
Q ss_pred HHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 016307 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 232 ~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~ 308 (392)
..+..++.++...+++..|+..++.+.+. .+.. ......+|.++...|++++|+..|++++++...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET----DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 35566778888889999999988877543 2222 236778999999999999999999999987544
No 250
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=89.52 E-value=1.4 Score=37.80 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
.+...||.+....+++++|+..|+++++
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4567788888788888888888888765
No 251
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.39 E-value=1.6 Score=34.89 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=63.5
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhhc
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~----~g~l~~A~~~~e~sl~~~~~~~~~ 312 (392)
++.++........++.+++.+.+. ....+..+|+.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------
Confidence 555554444444566666555322 123577899999988 68999999999998743
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 016307 313 HSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~~ 353 (392)
....+..+||.++.. .+++++|+.+|+++.+.
T Consensus 91 ---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 91 ---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 125577899999998 89999999999998764
No 252
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.01 E-value=0.28 Score=52.42 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=55.7
Q ss_pred CceeccccccccccCceecccc-CcchHHhHhcCC----CCCCCCccccc--chhhHHHHHHHHHHHhhchh
Q 016307 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR 152 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~lv~~~~~~~~~ 152 (392)
+++.|||-+++.. +||+++-| ++|=+..|.+|. .||.-|.++.. +.||..|+..++.+......
T Consensus 890 ~~F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 890 DEFLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp GGGBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HHhCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 4688999999988 99999998 699999999994 49999998876 89999999999999865443
No 253
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=89.01 E-value=0.016 Score=41.95 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhh---------hhhhcCCchhhhcHHHHHHHHHHhCCC
Q 016307 226 LCSQLGAVLGMLGD---------CCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 226 ~C~~h~~~L~~fC~---------~~~~~h~~h~a~~~~e~~~e~~~~L~~ 266 (392)
.|+.|++.|.+||. |....|+.|..+++.+++.+.+.+|..
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l~ea~~~~k~~L~~ 69 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETESGP 69 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTTSSSCEEEHHHHHHHHSSCCCC
T ss_pred cCcccCCceEEEeCCCCeEEccccCCCCCCCCCEecHHHHHHHHHHHHHH
Confidence 68899889999995 334578889999999999888877765
No 254
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=88.91 E-value=2.2 Score=41.65 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 016307 326 SLAKVADVDRS----IGNEDVAVDGFQEAI 351 (392)
Q Consensus 326 sl~~la~~~~~----~g~~~~A~~~~~eal 351 (392)
+...||.++.. .+++++|+..|+++.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 44555666655 566666666666554
No 255
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=87.84 E-value=2.1 Score=30.25 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
.+..+..+|.++..+|++++|+..|++++.+ .|.+.....+++.++..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~ 58 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGD 58 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhh
Confidence 4566788999999999999999999998864 46666677777777665543
No 256
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.74 E-value=0.24 Score=44.49 Aligned_cols=43 Identities=26% Similarity=0.697 Sum_probs=35.7
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC------CCCCCCcccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
...|.+|..++....++..|+|.|=..|+..|+ .||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 457999999988667777799999999999884 4999997643
No 257
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.14 E-value=5 Score=29.82 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGD---LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~l~~l~~~~g~---l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
.+-.++.+.+..++ .++|...|+++|++ ++.+ ...+..+|.++...|++++|+..|+++++..
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQL-------EPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34455666655543 68888888888764 3432 4567788999999999999998888765432
Q ss_pred HHhhcCCchHHHHHHHHH
Q 016307 355 ESLTLKPEEAGLEQRVRF 372 (392)
Q Consensus 355 e~l~~~~~~~~l~~~l~~ 372 (392)
...|.-..+.+.+..
T Consensus 74 ---p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 74 ---DPNLDRVTIIESINK 88 (93)
T ss_dssp ---CTTCCHHHHHHHHHH
T ss_pred ---CCCccHHHHHHHHHH
Confidence 224444445554543
No 258
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=84.86 E-value=5.4 Score=38.82 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=16.7
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 278 ~~~~l~~l~~~----~g~l~~A~~~~e~sl~ 304 (392)
+...||.++.. .+++++|+..|+++.+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45556666666 5666666666666653
No 259
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=84.78 E-value=2.5 Score=47.37 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=61.4
Q ss_pred hhhhhcCCchhhhcHHHHHHHH---HHhCCCCchhhhHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 016307 239 DCCRAMGDADAAVAYFADSVEF---LMKLPMDDLEIIHTL--------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 239 ~~~~~~h~~h~a~~~~e~~~e~---~~~L~~~~~e~~~~i--------~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~ 307 (392)
.++...+.+.+|..+|+..... ...+-.....+++.+ .....++|..+...|++++|+..|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 3555667777777777765211 111111111122222 244567788888888888888888664
Q ss_pred HHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016307 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l 354 (392)
+-...+..++..+..+|++++|+++|+.+.+..
T Consensus 1132 --------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1132 --------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred --------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 113455668889999999999999998877654
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.50 E-value=18 Score=30.27 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=59.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC-------
Q 016307 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK------- 360 (392)
Q Consensus 288 ~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~------- 360 (392)
..+.++.|+-...-.+.+-.. ...+......+..+..+|+++...|++..|...|++++...+.+...
T Consensus 32 d~~LY~sA~~La~lLlSl~~~-----~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNN-----NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-----STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HhhhHHHHHHHHHHHHHhhcC-----CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 456677776666665555322 12222233557789999999999999999999999999999865211
Q ss_pred ------------CchHHHHHHHHHHHHHHHhc
Q 016307 361 ------------PEEAGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 361 ------------~~~~~l~~~l~~~~~~l~~~ 380 (392)
+.+..+..+++..+..++..
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 23345666677777776654
No 261
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=83.21 E-value=3.9 Score=37.07 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 325 VSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+..++.++..+|++++|...|++++.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3456677888888999999988888876
No 262
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.65 E-value=0.71 Score=43.94 Aligned_cols=58 Identities=24% Similarity=0.455 Sum_probs=43.3
Q ss_pred ceeccccccccccCceeccccCcchHHh--------HhcCCCCCCCCccccc--chhhHHHHHHHHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKAC--------ISRFKDCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~C--------i~~~~~CP~C~~~~~~--~~~n~~l~~lv~~~ 146 (392)
.|.||+=...+..+.+...|.|..|..- -...|.||.|.+.+.. +..+..+.+++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 5889999888886667778999855432 1234899999998866 88888887776543
No 263
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.22 E-value=9.8 Score=27.90 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+.|..+.+.|......|++++|+.+|.++++.|...
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3556667777777788899999999999999999887
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.91 E-value=6.2 Score=33.13 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCC-----------CCcchhHHHHHHHHHHHHHHhcCCHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN-----------VPSQVLDVAVSLAKVADVDRSIGNED 341 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~-----------~~~~~~dla~sl~~la~~~~~~g~~~ 341 (392)
......+-.+++..+..+++..|...|.++|++++.+...... ....++.-+...-+++..+..+++.+
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 3445677889999999999999999999999988743221110 00011212333457889999999977
Q ss_pred HHHHHHHHHHHHHHHh
Q 016307 342 VAVDGFQEAIKRLESL 357 (392)
Q Consensus 342 ~A~~~~~eal~~le~l 357 (392)
+|+ .+|+.+
T Consensus 140 ~Ai-------~~Le~I 148 (167)
T 3ffl_A 140 DAI-------AILDGI 148 (167)
T ss_dssp HHH-------HHHHTS
T ss_pred HHH-------HHHhcC
Confidence 766 456666
No 265
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=81.58 E-value=6.2 Score=29.59 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=49.0
Q ss_pred hhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 236 ~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
.+|......+++..|+.-++++.+....-.. ...........++...+.+|+++.|+..|++++++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCC----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4556667888999999999888766543211 01123467789999999999999999999999865
No 266
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=81.37 E-value=30 Score=31.00 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 293 ~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
++|+..|+++++. -.+.. ......++.++..+|++++|...|+++++
T Consensus 81 ~~A~~~~~rAl~~------~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 81 DEAANIYERAIST------LLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp HHHHHHHHHHHTT------TTTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH------hCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6666666666541 12221 23455667777777877777777777664
No 267
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=80.28 E-value=14 Score=26.98 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
+.|..+.+.|.-....|++++|+.+|.++++.|...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456666677777788899999999999999999887
No 268
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.64 E-value=1 Score=42.67 Aligned_cols=57 Identities=18% Similarity=0.403 Sum_probs=42.7
Q ss_pred ceeccccccccccCceeccccCcchHHhH--------hcCCCCCCCCccccc--chhhHHHHHHHHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci--------~~~~~CP~C~~~~~~--~~~n~~l~~lv~~ 145 (392)
.|.||+=...+..+.+...|.|.-|..-. ...|.||.|.+.+.. +..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 58899998888866677789998554321 234899999998875 8888888777643
No 269
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=79.43 E-value=10 Score=34.72 Aligned_cols=127 Identities=15% Similarity=-0.071 Sum_probs=80.0
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHhcccccHHHHHHHHHHHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCch
Q 016307 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~~~~~~A~~~~~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~ 269 (392)
+.-....|++++|...+..... . -|.+- .....+.++...+++..++.+++.. +..
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~-------~-------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a------~~~--- 164 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV-------A-------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSA------GKW--- 164 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC-------T-------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG------GGC---
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-------c-------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHh------hcc---
Confidence 3345567788888777753321 0 01111 2333444566677777777666422 110
Q ss_pred hhhHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcC-CCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016307 270 EIIHTL-SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 270 e~~~~i-~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~-~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
..+.. ..+.-.+|.+...+|++++|+..|++++. ... +. .....+-++|.++..+|+.++|...|
T Consensus 165 -~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~------~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 165 -PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA------CARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp -SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT------THHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc------ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 01212 34678889999999999999999998762 111 21 13445678999999999999999888
Q ss_pred HHHHHH
Q 016307 348 QEAIKR 353 (392)
Q Consensus 348 ~eal~~ 353 (392)
++++.+
T Consensus 232 ~~a~a~ 237 (282)
T 4f3v_A 232 EWLQTT 237 (282)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 270
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=78.53 E-value=7.5 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
++|.-+..+|+|+.|+.+|+.+++.+++....-.+.....+-..+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~ 61 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQV 61 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHH
Confidence 557778889999999999999999999984333455544443333
No 271
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.40 E-value=12 Score=28.09 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+.|..+.+.|.-....|++++|+.+|.++++.|...
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4566677777877788899999999999999999887
No 272
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.85 E-value=6.3 Score=28.36 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHH-HHHHHHHHHHHHHh
Q 016307 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRVRFLFQLLVV 379 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~-l~~~l~~~~~~l~~ 379 (392)
+.|.++..+|++++|+..|++++++ +|.+.. ...+++.++..++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~ 50 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGD 50 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCC
Confidence 4577778889999999998888764 677777 77778887766654
No 273
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=76.81 E-value=12 Score=34.09 Aligned_cols=85 Identities=4% Similarity=-0.208 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..-.++.+.+..+++++|+..|++++.. .. -..-....-++|.++..+|++++|+..|+++.. -
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~--------~d----~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g 200 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW--------PD----KFLAGAAGVAHGVAAANLALFTEAERRLTEAND----S 200 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC--------SC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc--------CC----cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----C
Confidence 4566677889999999999999744221 10 001133567899999999999999999998862 1
Q ss_pred hcCCc-hHHHHHHHHHHHHHHH
Q 016307 358 TLKPE-EAGLEQRVRFLFQLLV 378 (392)
Q Consensus 358 ~~~~~-~~~l~~~l~~~~~~l~ 378 (392)
...|. ......+++.++..++
T Consensus 201 ~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 201 PAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHT
T ss_pred CCCccccHHHHHHHHHHHHHcC
Confidence 11133 3334455555555544
No 274
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=76.21 E-value=2.1 Score=42.09 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHHh
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR--RDAV 310 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~--~~~~ 310 (392)
.+..+|+.|...+++..|..+|... .-..++++....+|++++|+..|+++-... +.+.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~ 184 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 184 (449)
T ss_dssp -------------CTTTHHHHHHHT-------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHH
Confidence 4555667777888888888887643 245788999999999999999999984431 2110
Q ss_pred ------------hcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 311 ------------KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 311 ------------~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
....-.+. --+..+..+...|+..|++++|+.+|++++
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11111111 223335567788999999999999999984
No 275
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=75.37 E-value=17 Score=28.50 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..+.|..+...|.-....|++++|+.+|.++++.|..+
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 44566666777766677799999999999999999887
No 276
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=75.05 E-value=40 Score=29.66 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 016307 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 369 (392)
Q Consensus 290 g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~ 369 (392)
|+.+.+...|+.+.++.+..+..... .-|...||.--..|+.+++.++|..+-++++.+.+......++-.-...
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthP-----irLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~ 213 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQ-----LPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQ 213 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGG-----SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCh-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence 56889999999999987754332221 1345567776778999999999999999999987665444444444445
Q ss_pred HHHHHHHHHhc
Q 016307 370 VRFLFQLLVVS 380 (392)
Q Consensus 370 l~~~~~~l~~~ 380 (392)
+--+++.|+.+
T Consensus 214 ~~~~~q~~~d~ 224 (227)
T 2o8p_A 214 ITVYLQGIKDY 224 (227)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 55566666554
No 277
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=74.09 E-value=6 Score=31.37 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHh
Q 016307 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 282 l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~~le~l 357 (392)
|+.+.......++|+..|+++.+. ....+..+||.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----
Confidence 888877777888899999988753 125678899999998 89999999999998753
Q ss_pred hcCCchHHHHHHHHHHHHH
Q 016307 358 TLKPEEAGLEQRVRFLFQL 376 (392)
Q Consensus 358 ~~~~~~~~l~~~l~~~~~~ 376 (392)
.+.....+++.+|..
T Consensus 91 ----g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 91 ----NDQDGCLILGYKQYA 105 (138)
T ss_dssp ----TCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHC
Confidence 234445556655543
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=72.09 E-value=16 Score=26.88 Aligned_cols=35 Identities=26% Similarity=0.109 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
-|..+-+-|.-....|++++|+.+|.++++.+-.+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35555666666778899999999999999999887
No 279
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=71.91 E-value=16 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..+.|..+...|.-....|++++|+.+|.++++.+...
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34556667777776777899999999999999998887
No 280
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=68.73 E-value=22 Score=33.79 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
...-++-.....|++++|+..+++++++. +. +..+..+|.++...|+.++|++.|++|+.+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s--------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE-------MS--------WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44445555556699999999999999872 11 335567899999999999999999988765
No 281
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=68.06 E-value=13 Score=30.73 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVR 371 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~ 371 (392)
-...+-+||..+..+|++++|..+++.++++ +|++........
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i------eP~n~QA~~Lk~ 112 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHH
Confidence 3557889999999999999999888776644 555555444433
No 282
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=64.98 E-value=14 Score=27.66 Aligned_cols=43 Identities=26% Similarity=0.719 Sum_probs=31.8
Q ss_pred cCceeccccccccccCceeccc-cCcchHHhHhcCC----CCCCCCccccc
Q 016307 87 IGPLSCMICQALLFECSKCTPC-SHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~l~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.+.+.|..|--. ..-.+.| -|-+|..|+.... .||.|..++..
T Consensus 26 ~G~~nCKsCWf~---~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFE---NKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSC---CSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccc---cCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 356789988755 3355566 5999999998774 39999987654
No 283
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=63.21 E-value=0.015 Score=43.43 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHHHH-HHHHhhhhh---------hhh-hcCCchhhhcHHHHHHHHHHhCCCCchhh
Q 016307 226 LCSQL-GAVLGMLGD---------CCR-AMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~---------~~~-~~h~~h~a~~~~e~~~e~~~~L~~~~~e~ 271 (392)
.|+.| ++.|.+||. |.. ..|+.|..+++.+++.+++.+|......+
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~l~~L 76 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNL 76 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCCCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 68999 688999995 333 46888999999988877766666554443
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.11 E-value=74 Score=30.36 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
.+-+++.++...|++.+|...+.+.++..+.. +....+.+ .......++..++++.++...|..+..+...+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-----dd~~~lle---v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKL-----DDKNLLVE---VQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-----SCTHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHH---HHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 45688999999999999999998887765432 12222233 23445677888999999999999999888655
Q ss_pred hcCCc
Q 016307 358 TLKPE 362 (392)
Q Consensus 358 ~~~~~ 362 (392)
..+|.
T Consensus 173 ~~~p~ 177 (394)
T 3txn_A 173 YCPPK 177 (394)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 44443
No 285
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=62.94 E-value=0.03 Score=39.35 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=29.9
Q ss_pred HHHHH-HHHHhhhhh---------hhh-hcCCchhhhcHHHHHHHHHHhCC
Q 016307 226 LCSQL-GAVLGMLGD---------CCR-AMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~---------~~~-~~h~~h~a~~~~e~~~e~~~~L~ 265 (392)
.|+.| ++.|.+||. |.. ..|+.|..+++.+++.+.+.+|.
T Consensus 10 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 10 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSS
T ss_pred cCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHHHHH
Confidence 68889 889999995 322 36888999999887766555554
No 286
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=61.98 E-value=37 Score=38.37 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+....+++.++..+|++++|++.++++..
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 34566777788888888888887766643
No 287
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=61.82 E-value=20 Score=34.52 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLK---YYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~~~~l~~l~---~~~g~l~~A~~~~e~sl~ 304 (392)
.+..+++.+. ...+++++|+..|+++++
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3566777773 345788888888888764
No 288
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=60.99 E-value=1.4 Score=33.25 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=27.5
Q ss_pred eeccccccccccCceeccccCcchHHhHhcCC---CCCCCCcccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEKI 133 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~~ 133 (392)
+.||+|+..+. . .=++.+|..|-..+. .||.|.+++..+
T Consensus 33 ~~CP~Cq~eL~-~----~g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLD-Q----DNGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEE-E----ETTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcce-e----cCCEEECccccchhhccccCcchhhHHHHH
Confidence 78999998765 1 123445888876663 499999876654
No 289
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=58.00 E-value=7.1 Score=28.30 Aligned_cols=32 Identities=38% Similarity=0.843 Sum_probs=24.0
Q ss_pred CceeccccccccccCceeccc----cCcchHHhHhcC
Q 016307 88 GPLSCMICQALLFECSKCTPC----SHVYCKACISRF 120 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C----~h~fC~~Ci~~~ 120 (392)
..|.|.+|.+-|.+.-++ .| .|.||..|-...
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHH
Confidence 458899999999854332 33 699999997665
No 290
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=57.51 E-value=0.16 Score=33.54 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=23.1
Q ss_pred HHHHH-HHHHhhhhh---------hhhhcCCchhhhcHHHHH
Q 016307 226 LCSQL-GAVLGMLGD---------CCRAMGDADAAVAYFADS 257 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~---------~~~~~h~~h~a~~~~e~~ 257 (392)
.|+.| ++.|.+||. |....|+.|..+++.+++
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l~ea~ 49 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAV 49 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCCEEETTC--
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCceecHHHHh
Confidence 58888 889999995 334578889888876543
No 291
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=57.20 E-value=0.11 Score=34.89 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhh---------hhh-hcCCchhhhcHHHH
Q 016307 226 LCSQLGAVLGMLGD---------CCR-AMGDADAAVAYFAD 256 (392)
Q Consensus 226 ~C~~h~~~L~~fC~---------~~~-~~h~~h~a~~~~e~ 256 (392)
.|+.|++.|++||. |.. ..|+.|..+++.++
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea 50 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLSGP 50 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECCCT
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHHHH
Confidence 68889889999995 332 46888988877654
No 292
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=56.04 E-value=1e+02 Score=29.81 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=37.8
Q ss_pred HhhhhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 234 L~~fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
...++......++..+|..+++.+.+ +.+... .......+.+....|++++|+..|+++++
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA----IEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33444455556777777777776543 333221 12555666666677788888888888875
No 293
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=55.72 E-value=2.6 Score=30.56 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=24.3
Q ss_pred cceeccCCCCch------hHHHhHHHHHHHhhcHHHHHHhhhccHHHHHH-HHh
Q 016307 172 KVIYEDVSMERG------AFLVQQAMRAFRAQNVESAKSRLSLCTEDIRD-QIE 218 (392)
Q Consensus 172 ~~~~Cd~C~~~~------~cl~c~a~~~~~~~~~~~A~~~~~~c~~~~~~-~l~ 218 (392)
..+.|++|.+.+ +|+.|.+ ++|..|+.. |..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~----------------s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEV----------------SYCDECLKATHPN 66 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTE----------------EECHHHHHHHSCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccc----------------hhhhhhhHhhcCC
Confidence 468899998643 2999988 999999986 544
No 294
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=54.51 E-value=6.4 Score=38.58 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~ 353 (392)
..+.+|+..+..|.+++|+.+|.++ ....++++++..+|++++|++.|+++..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence 6778888888888888888888865 35678888888999999999888887544
No 295
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=54.10 E-value=87 Score=29.89 Aligned_cols=90 Identities=6% Similarity=0.029 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHH----H------HHhhcC---CCCC---cch-----hHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGG---DLQAARSYYVRSLNVR----R------DAVKRH---SNVP---SQV-----LDVAVSLAKVADV 333 (392)
Q Consensus 278 ~~~~l~~l~~~~g---~l~~A~~~~e~sl~~~----~------~~~~~~---~~~~---~~~-----~dla~sl~~la~~ 333 (392)
+...|+.++...| ++++|+..|+++++.- . ...... ..+. ... .+....+.+||.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678888888888 8888888888876520 0 000000 0000 000 1123345566766
Q ss_pred -H--HhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 016307 334 -D--RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFLFQ 375 (392)
Q Consensus 334 -~--~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~~~ 375 (392)
+ ...+++++|+.+|+++.+ ..+.....+++.+|.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~--------~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRA--------ADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHH
Confidence 4 346777777777777652 235556667776665
No 296
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.30 E-value=1.1e+02 Score=29.07 Aligned_cols=106 Identities=16% Similarity=-0.011 Sum_probs=69.3
Q ss_pred hhhhhhhcCCchhhhcHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016307 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~~~~~h~~h~a~~~~e~~~e~~~~L~~~~~e~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~ 316 (392)
++..+...|++.++..+.....+...++++. ..+-+..-..-.++..++++.++...|.++..+..... ..+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-----~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p-- 176 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDK-----NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CPP-- 176 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CCH--
Confidence 5567778899999998888776666666442 22222333334466678999999999999887754331 111
Q ss_pred CcchhHHHHHHH-HHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 016307 317 PSQVLDVAVSLA-KVADVDR-SIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 317 ~~~~~dla~sl~-~la~~~~-~~g~~~~A~~~~~eal~~le 355 (392)
.+...+. --|.++. ..++|++|...|-++.+-+.
T Consensus 177 -----~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 177 -----KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp -----HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 1222333 3356777 78999999999988865543
No 297
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=52.02 E-value=26 Score=34.21 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~ 305 (392)
....++.+....|++++|+..|++++++
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 5566778888889999999999998763
No 298
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=50.57 E-value=42 Score=30.97 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l 357 (392)
..--++.+....|++++|+..+.+.+. ..+. .+-...+..++.++..+|+.+.|.+.++++.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~-------~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~----- 164 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGID-------NDEA-----EGTTELLLLAIEVALLNNNVSTASTIFDNYTN----- 164 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT-------SSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence 345778888888898888888877642 2210 12244566778888899998888876665433
Q ss_pred hcCCc----hHHHHHHHHHHHHHHHhccccccC
Q 016307 358 TLKPE----EAGLEQRVRFLFQLLVVSSLDYEN 386 (392)
Q Consensus 358 ~~~~~----~~~l~~~l~~~~~~l~~~~~~~~~ 386 (392)
.+|+ +..++-.+...|..+.....+|++
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHH
Confidence 3332 334445555555555555555553
No 299
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=49.83 E-value=10 Score=28.27 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=34.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcCC--CCCCCCcccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~ 131 (392)
=|.|..|...|........=+..||..|..+.. .|..|...+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 378999999887556667778899999998764 5999988765
No 300
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.79 E-value=12 Score=25.62 Aligned_cols=36 Identities=33% Similarity=0.851 Sum_probs=25.7
Q ss_pred eccccccccccCc--eeccccCcchHHhHh----cCCCCCCC
Q 016307 91 SCMICQALLFECS--KCTPCSHVYCKACIS----RFKDCPLC 126 (392)
Q Consensus 91 ~C~iC~~~~~~~p--~~~~C~h~fC~~Ci~----~~~~CP~C 126 (392)
.|-.|+..|.+.. ....|++.||..|=. ....||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4888988875222 366799999999932 23569987
No 301
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.88 E-value=0.17 Score=34.85 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhh---------hhh-hcCCchhhhcHHH
Q 016307 226 LCSQLGAVLGMLGD---------CCR-AMGDADAAVAYFA 255 (392)
Q Consensus 226 ~C~~h~~~L~~fC~---------~~~-~~h~~h~a~~~~e 255 (392)
.|+.|++.|.+||. |.. ..|+.|..+++.+
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l~e 55 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPTSG 55 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEECCS
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeHHH
Confidence 58889889999995 332 4688898877654
No 302
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=48.06 E-value=42 Score=30.83 Aligned_cols=132 Identities=15% Similarity=0.024 Sum_probs=74.6
Q ss_pred HHHHhhhhhhhhh---c-CCchhhhcHHHHHHHHHH---hCCCCchhhhHHHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 016307 231 GAVLGMLGDCCRA---M-GDADAAVAYFADSVEFLM---KLPMDDLEIIHTLSVSLNKIGDLKYYG-----GDLQAARSY 298 (392)
Q Consensus 231 ~~~L~~fC~~~~~---~-h~~h~a~~~~e~~~e~~~---~L~~~~~e~~~~i~~~~~~l~~l~~~~-----g~l~~A~~~ 298 (392)
-+.|.|.+-.+.. . .....++.....+..+++ +|.+. . .-..+..-+|.+++.+ |+.++|...
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~---~--~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS---Y--QEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT---H--HHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC---c--ccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 3456666654322 2 122455555554433332 33332 1 1234677889999885 899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhcCCchH----HHHHHHHHH
Q 016307 299 YVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEAIKRLESLTLKPEEA----GLEQRVRFL 373 (392)
Q Consensus 299 ~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~-~g~~~~A~~~~~eal~~le~l~~~~~~~----~l~~~l~~~ 373 (392)
|+++|++. +.. -+...--.|+.+.. +|+.+.|..++++++..=-+ ..|... ...+....+
T Consensus 227 ferAL~Ln-------P~~------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~--~~P~~~lan~~~q~eA~~L 291 (301)
T 3u64_A 227 FEHLTRYC-------SAH------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPE--SVPHNKLLVILSQKRARWL 291 (301)
T ss_dssp HHHHHHHC-------CTT------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG--GCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCC------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC--CCCChhHHHHHHHHHHHHH
Confidence 99999872 211 01233455666655 59999999888888653211 113322 233334456
Q ss_pred HHHHHhccc
Q 016307 374 FQLLVVSSL 382 (392)
Q Consensus 374 ~~~l~~~~~ 382 (392)
+..+..++.
T Consensus 292 L~~~~d~F~ 300 (301)
T 3u64_A 292 KAHVQDFFL 300 (301)
T ss_dssp HHTHHHHCC
T ss_pred HHHhHHhcc
Confidence 666666554
No 303
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=46.29 E-value=6.2 Score=28.68 Aligned_cols=21 Identities=24% Similarity=0.903 Sum_probs=17.8
Q ss_pred cccCcchHHhHhcCCCCCCCCc
Q 016307 107 PCSHVYCKACISRFKDCPLCGA 128 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~~CP~C~~ 128 (392)
.|++.||..|...|.. -.|..
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSS
T ss_pred CCCCeeccccCccccC-Ccccc
Confidence 6999999999999977 66754
No 304
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=46.23 E-value=0.37 Score=30.39 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhh---------hhh-hcCCchhhhc
Q 016307 226 LCSQLGAVLGMLGD---------CCR-AMGDADAAVA 252 (392)
Q Consensus 226 ~C~~h~~~L~~fC~---------~~~-~~h~~h~a~~ 252 (392)
.|+.|++.|.+||. |.. ..|+.|..++
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence 57888889999995 222 3577787654
No 305
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=43.44 E-value=2.6e+02 Score=28.20 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~s 302 (392)
..++++++....++++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6688999999999999999999986
No 306
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.18 E-value=63 Score=30.52 Aligned_cols=32 Identities=3% Similarity=-0.178 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 273 ~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
..+....+.+.....+..+.+.+...|..-|+
T Consensus 88 ~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 88 TLTKNIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 33333333333333333444444444444433
No 307
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=42.76 E-value=10 Score=29.66 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=35.4
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC--CCCCCCCcccc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
-|.|..|...|...+....=+..||..|..+. ..|..|+.++.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 47899999988856777778889999999875 45999998776
No 308
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=42.55 E-value=28 Score=28.30 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=26.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhc---------------CCCCCCCCc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISR---------------FKDCPLCGA 128 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~---------------~~~CP~C~~ 128 (392)
+..|.+|.+- -+-.-.-.|-.+||..||.+ .|.||.|+.
T Consensus 63 ~d~C~vC~~G-G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG-GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC-SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC-CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3458888764 21223336888999999872 278999975
No 309
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=41.63 E-value=4.4 Score=29.67 Aligned_cols=38 Identities=24% Similarity=0.691 Sum_probs=23.4
Q ss_pred eeccccccccccCceeccccCcchHHhHhcCC---CCCCCCccccc
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
+.||.|...+..... +.+|..|-..+. -||.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~-----~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-----TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS-----EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC-----ceECccccccCCCcccCcchhhHHHH
Confidence 568888877652221 334666755442 39999886554
No 310
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.48 E-value=8 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.641 Sum_probs=19.9
Q ss_pred eeccccccccccC-----ceecc--ccCcchHHhHhcCC
Q 016307 90 LSCMICQALLFEC-----SKCTP--CSHVYCKACISRFK 121 (392)
Q Consensus 90 l~C~iC~~~~~~~-----p~~~~--C~h~fC~~Ci~~~~ 121 (392)
-.||-|...+... -.... |++.||+.|...|.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 3577777665432 12223 88888888887763
No 311
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=40.83 E-value=41 Score=23.30 Aligned_cols=39 Identities=23% Similarity=0.615 Sum_probs=25.4
Q ss_pred eccccccccccCceeccccCcchHHhHhcC--------CCCCCCCccc
Q 016307 91 SCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGADI 130 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~~~ 130 (392)
.|.||.+- .+-...-.|...|-..|+... |.||.|....
T Consensus 14 ~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 14 RCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 48888754 212333357778888888543 6799997643
No 312
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=39.75 E-value=64 Score=26.12 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHh
Q 016307 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRVRFLFQLLVV 379 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~~le~l--~~~~~~~~l~~~l~~~~~~l~~ 379 (392)
|......|+++++-..+.++..|+..| ..+.+ ..+-.+|..+|.++..
T Consensus 40 A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y~~~ 89 (145)
T 1vh6_A 40 AAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDYMYR 89 (145)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Confidence 333334577777777777777777666 33333 4555666666666544
No 313
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=39.44 E-value=1.4e+02 Score=23.57 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=32.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHhc
Q 016307 334 DRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVVS 380 (392)
Q Consensus 334 ~~~~g~~~~A~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~~ 380 (392)
....|++++.-....++..|+..| ..+.+. ..+-.++..+|.++...
T Consensus 46 ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~ 95 (131)
T 3iqc_A 46 CIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKV 95 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHH
Confidence 334588888888888888888877 444443 24677777777776644
No 314
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.13 E-value=7.5 Score=27.10 Aligned_cols=29 Identities=28% Similarity=0.751 Sum_probs=23.5
Q ss_pred eeccccccccccCceeccc-cCcchHHhHhcC
Q 016307 90 LSCMICQALLFECSKCTPC-SHVYCKACISRF 120 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~ 120 (392)
--|.||.+. - ..+++.| +-.||..|+.+.
T Consensus 9 pWC~ICneD-A-tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNED-A-TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSC-C-CEEETTTTSEEECSSHHHHH
T ss_pred CeeEEeCCC-C-eEEecCCCCceehHHHHHHH
Confidence 349999988 4 5788889 789999999764
No 315
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.02 E-value=6.4 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.684 Sum_probs=20.2
Q ss_pred eccccccccccC-----ceeccccCcchHHhHhcC
Q 016307 91 SCMICQALLFEC-----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 91 ~C~iC~~~~~~~-----p~~~~C~h~fC~~Ci~~~ 120 (392)
.||-|...+... .....|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 488777654322 223349999999998877
No 316
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=37.42 E-value=1.2e+02 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=34.1
Q ss_pred hcCCH-HHH---HHHHHHHHHHHHHh--hcCCch-HHHHHHHHHHHHHHHhcc
Q 016307 336 SIGNE-DVA---VDGFQEAIKRLESL--TLKPEE-AGLEQRVRFLFQLLVVSS 381 (392)
Q Consensus 336 ~~g~~-~~A---~~~~~eal~~le~l--~~~~~~-~~l~~~l~~~~~~l~~~~ 381 (392)
..|++ +++ -.....+..|+..| ..+.+. ..+-.+|.++|.++....
T Consensus 41 ~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~L 93 (130)
T 1orj_A 41 DQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTL 93 (130)
T ss_dssp GGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHH
Confidence 35777 777 77788888888888 555554 367788888888887665
No 317
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.27 E-value=0.58 Score=31.88 Aligned_cols=27 Identities=15% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhh---------hhh-hcCCchhhhc
Q 016307 226 LCSQLGAVLGMLGD---------CCR-AMGDADAAVA 252 (392)
Q Consensus 226 ~C~~h~~~L~~fC~---------~~~-~~h~~h~a~~ 252 (392)
.|..|++.|++||. |.. ..|+.|.+++
T Consensus 20 ~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCceeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence 68889889999995 222 3577777654
No 318
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.80 E-value=10 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.821 Sum_probs=19.1
Q ss_pred ccCceeccccCcchHHhHhcC---CCCCCCCcc
Q 016307 100 FECSKCTPCSHVYCKACISRF---KDCPLCGAD 129 (392)
Q Consensus 100 ~~~p~~~~C~h~fC~~Ci~~~---~~CP~C~~~ 129 (392)
..++.+..||+.| ...+ ..||.|+..
T Consensus 65 v~p~~C~~CG~~F----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVF----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBC----CCCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCee----cccCCCCCCCcCCCCC
Confidence 4488999999999 2333 459999864
No 319
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.43 E-value=1.5e+02 Score=29.09 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016307 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...+...+-.||+|..+...+..|..+|.+++.+ .+ +.....+.||.+....|+.-.|+=+|-.++
T Consensus 148 ~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-------~P-------~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VP-------SNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT-------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh-------CC-------CCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3455668888999999999999999999998865 23 235678888888888888888876665554
No 320
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=31.96 E-value=37 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=17.4
Q ss_pred ceeccccccccccCceec---cccCcchHHhHhc
Q 016307 89 PLSCMICQALLFECSKCT---PCSHVYCKACISR 119 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~ 119 (392)
+-.|.||... . .-..+ -|+.+|=..|+.+
T Consensus 15 D~~C~VC~~~-t-~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 15 DEMCDVCEVW-T-AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp SCCCTTTCCC-C-SSCCSSCSSSSSCCCHHHHHH
T ss_pred CcccCccccc-c-ccceeccccccccccHhhccc
Confidence 4558888854 2 22233 3566776788766
No 321
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.81 E-value=36 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.627 Sum_probs=22.1
Q ss_pred ceecccccccccc---CceeccccCcchHHhHhc
Q 016307 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISR 119 (392)
Q Consensus 89 ~l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~ 119 (392)
...|.+|...|.. .--...||..||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3469999886541 344567999999999753
No 322
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.90 E-value=41 Score=22.75 Aligned_cols=39 Identities=28% Similarity=0.623 Sum_probs=24.7
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC--------CCCCCCCc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGA 128 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~ 128 (392)
...|.+|... -+-...-.|-..|-..|+... |.||.|..
T Consensus 11 ~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4568888764 212233356667778888652 67999965
No 323
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.76 E-value=13 Score=23.95 Aligned_cols=27 Identities=26% Similarity=0.795 Sum_probs=17.3
Q ss_pred eeccccCcchHHhHhcC--CCCCCCCccc
Q 016307 104 KCTPCSHVYCKACISRF--KDCPLCGADI 130 (392)
Q Consensus 104 ~~~~C~h~fC~~Ci~~~--~~CP~C~~~~ 130 (392)
.++.||+.|=..=++.. ..||.|+..+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 45667777765544443 3599998754
No 324
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.11 E-value=19 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.805 Sum_probs=21.9
Q ss_pred eecccccccccc---CceeccccCcchHHhHhc
Q 016307 90 LSCMICQALLFE---CSKCTPCSHVYCKACISR 119 (392)
Q Consensus 90 l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~ 119 (392)
..|.+|...|.. .--+..||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 469999886541 245568999999999754
No 325
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.59 E-value=10 Score=22.81 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=6.9
Q ss_pred eeccccccccc
Q 016307 90 LSCMICQALLF 100 (392)
Q Consensus 90 l~C~iC~~~~~ 100 (392)
+.||+|+..|.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 56777766555
No 326
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.90 E-value=4e+02 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHhhhhhhhhhcCCchhhhcHHHHH
Q 016307 233 VLGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 233 ~L~~fC~~~~~~h~~h~a~~~~e~~ 257 (392)
..+.+++.+...++...|...|...
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455666666677777777777665
No 327
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.00 E-value=20 Score=35.34 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHh
Q 016307 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~~le~l 357 (392)
-++.|+...+.|+++
T Consensus 174 d~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQV 188 (562)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 344555555555555
No 328
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=26.93 E-value=1.1e+02 Score=24.83 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchH
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~ 364 (392)
+..|..|-..|.++...|+++.|--+|-....+++.+..||+-.
T Consensus 39 ~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk 82 (144)
T 2a9u_A 39 VHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFK 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 35566677779999999999999999999999998887777543
No 329
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.47 E-value=16 Score=29.39 Aligned_cols=41 Identities=24% Similarity=0.562 Sum_probs=28.6
Q ss_pred Cceeccccccccc-c---CceeccccCcchHHhHhcC--------CCCCCCCc
Q 016307 88 GPLSCMICQALLF-E---CSKCTPCSHVYCKACISRF--------KDCPLCGA 128 (392)
Q Consensus 88 ~~l~C~iC~~~~~-~---~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~ 128 (392)
+.-.|.+|...|. - ..++..|.|.+|..|-... |.|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3467999998772 1 2467789999999886532 45777764
No 330
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=26.38 E-value=3.5e+02 Score=24.10 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHhhcC--CchHH
Q 016307 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF----QEAIKRLESLTLK--PEEAG 365 (392)
Q Consensus 292 l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~----~eal~~le~l~~~--~~~~~ 365 (392)
.+.+...|++++++.+..+.. .++ .-|...||---..|+.+++.++|..+- .+++..++.|..+ .+..-
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~p--thP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~EesykDstl 225 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAP--THP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTL 225 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT--TCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHH
Confidence 346777888888886543322 111 244555666667888899999988654 5555667776222 23344
Q ss_pred HHHHHHHH
Q 016307 366 LEQRVRFL 373 (392)
Q Consensus 366 l~~~l~~~ 373 (392)
+++.|.+.
T Consensus 226 ImqLLRDN 233 (260)
T 1o9d_A 226 IMQLLRDN 233 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 331
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=25.81 E-value=3.7e+02 Score=24.21 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHHHH----------HHHHhhcCCCCCcchhHHHH--------------HH
Q 016307 278 SLNKIGDLKYYGGD------LQAARSYYVRSLNV----------RRDAVKRHSNVPSQVLDVAV--------------SL 327 (392)
Q Consensus 278 ~~~~l~~l~~~~g~------l~~A~~~~e~sl~~----------~~~~~~~~~~~~~~~~dla~--------------sl 327 (392)
+.+.-+.+....+. +++++.++.+++.+ ++-++.........+.+.+. ++
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 328 AKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+++++..+|+.++|++.|+.+.+
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
No 332
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.54 E-value=40 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=23.5
Q ss_pred ceeccccccccccCceeccccCcchHHhHhcC
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
=|.|..|...|........=+..||..|..+.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 37788888877756666667778888887654
No 333
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=25.34 E-value=1.5 Score=28.36 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHH-HHHhhhhh--------hhh--hcCCchhhhcH
Q 016307 226 LCSQLG-AVLGMLGD--------CCR--AMGDADAAVAY 253 (392)
Q Consensus 226 ~C~~h~-~~L~~fC~--------~~~--~~h~~h~a~~~ 253 (392)
.|+.|+ +.|++||. .|. ..|+.|.++++
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence 577887 78999995 232 36888887664
No 334
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=25.31 E-value=2e+02 Score=26.33 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Q 016307 324 AVSLAKVADVDRSI-----GNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 324 a~sl~~la~~~~~~-----g~~~~A~~~~~eal~~le 355 (392)
......+|.+|..+ |+.++|.++|++++++--
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP 235 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS 235 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC
Confidence 45667788999886 999999999999998753
No 335
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.11 E-value=25 Score=25.97 Aligned_cols=31 Identities=32% Similarity=0.877 Sum_probs=22.3
Q ss_pred ceeccccccccc---cCceeccccCcchHHhHhc
Q 016307 89 PLSCMICQALLF---ECSKCTPCSHVYCKACISR 119 (392)
Q Consensus 89 ~l~C~iC~~~~~---~~p~~~~C~h~fC~~Ci~~ 119 (392)
...|.+|...|. ..-....||..||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356999987653 1345568999999999754
No 336
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.74 E-value=79 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 016307 277 VSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~~~~l~~l~~~~g~l~~A~~~~e~sl~ 304 (392)
.+.--+|.+....|++++|+..|++.++
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3667789999999999999999998764
No 337
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=24.59 E-value=2.2e+02 Score=22.36 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 016307 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 369 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~ 369 (392)
-...+-.||..+..+|+|.+|..+++..+ ..+|.+......
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL------~~eP~n~QA~~L 113 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLL------QTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HhCCCCHHHHHH
Confidence 34567788999999999999987666554 445655544443
No 338
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=54 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.731 Sum_probs=20.6
Q ss_pred eecccccccccc---CceeccccCcchHHhHh
Q 016307 90 LSCMICQALLFE---CSKCTPCSHVYCKACIS 118 (392)
Q Consensus 90 l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~ 118 (392)
..|.+|...|.. .--...||..||..|..
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 459999886531 24456799999998854
No 339
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=24.17 E-value=2.1e+02 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016307 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 292 l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.+.+...|+++.++....+. +.++ .-|...||---..|+.+++.++|...-++++.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~--pthP---irLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMP--PTNP---IRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--TTCH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCC--CCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34667788888887654332 2211 24445566656788889999999987666653
No 340
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.86 E-value=28 Score=28.65 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=29.9
Q ss_pred Cceeccccccccc----cCceeccccCcchHHhHhc-----CCCCCCCCcc
Q 016307 88 GPLSCMICQALLF----ECSKCTPCSHVYCKACISR-----FKDCPLCGAD 129 (392)
Q Consensus 88 ~~l~C~iC~~~~~----~~p~~~~C~h~fC~~Ci~~-----~~~CP~C~~~ 129 (392)
.+-.|.+|+..|. ...++..|.|.+|..|-.. .|.|-+|.+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 3567999998652 1466778999999999632 2668888654
No 341
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=23.31 E-value=31 Score=24.31 Aligned_cols=28 Identities=32% Similarity=0.796 Sum_probs=20.4
Q ss_pred ecccccccccc---CceeccccCcchHHhHh
Q 016307 91 SCMICQALLFE---CSKCTPCSHVYCKACIS 118 (392)
Q Consensus 91 ~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~ 118 (392)
.|.+|...|.. .--...||..||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 59999876541 24456799999999864
No 342
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.14 E-value=1.5e+02 Score=28.20 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016307 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le 355 (392)
...++++++...|++++|...|.+.....- . .....++ +-.+..+....+++..+..+++++..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~----~----~~~kid~---~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI----S----TGAKIDV---MLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT----C----CCSHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C----hHHHHHH---HHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 456789999999999999999988664321 1 1222232 23333455556899999888888766553
No 343
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=22.91 E-value=33 Score=24.79 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=21.8
Q ss_pred eecccccccccc---CceeccccCcchHHhHhc
Q 016307 90 LSCMICQALLFE---CSKCTPCSHVYCKACISR 119 (392)
Q Consensus 90 l~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~ 119 (392)
..|.+|...|.. .--...||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 469999886541 244567999999999754
No 344
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.42 E-value=30 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.608 Sum_probs=15.8
Q ss_pred eeccccccccccCceeccccCcchHHhHh
Q 016307 90 LSCMICQALLFECSKCTPCSHVYCKACIS 118 (392)
Q Consensus 90 l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~ 118 (392)
|.|..|...|....+...-+..||..|..
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 60 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHN 60 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhh
Confidence 55666666555444444445556666654
No 345
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.20 E-value=2.7e+02 Score=22.41 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 016307 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRVRFL 373 (392)
Q Consensus 301 ~sl~~~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~le~l~~~~~~~~l~~~l~~~ 373 (392)
+.+.+.++.....+. .....|-.||..+..+|+|.+|..+.+..+ ...|.+...+.....+
T Consensus 60 ~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL------~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 60 LGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLF------EHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHH------HTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHH
Confidence 444444444443333 234567889999999999988886544333 5567665554443333
No 346
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.06 E-value=1.4e+02 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=17.9
Q ss_pred ceeccccccccccCceeccccCcchHH
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKA 115 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~ 115 (392)
...|..|...+--.++.=.|+..||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 356999977533234555599999954
No 347
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.90 E-value=30 Score=36.35 Aligned_cols=44 Identities=32% Similarity=0.808 Sum_probs=29.6
Q ss_pred CceeccccccccccC---------ceeccccCcc--------------------hHHhHhcCC------------CCCCC
Q 016307 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++++ ..++.||..| |..|-.++. .||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 345688888776642 2345677766 999987652 39999
Q ss_pred Ccccc
Q 016307 127 GADIE 131 (392)
Q Consensus 127 ~~~~~ 131 (392)
.=.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 86654
No 348
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.82 E-value=1.4e+02 Score=24.08 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhhcCCch
Q 016307 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL-ESLTLKPEE 363 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~~l-e~l~~~~~~ 363 (392)
+..|..+-+.|.++..-|+++.|.-+|-....++ +.+..||+-
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy 80 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccc
Confidence 3556666777999999999999999999998888 466667654
No 349
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.75 E-value=18 Score=27.26 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=9.2
Q ss_pred cchHHhHhcCC
Q 016307 111 VYCKACISRFK 121 (392)
Q Consensus 111 ~fC~~Ci~~~~ 121 (392)
-||+.|+..|.
T Consensus 42 GFCRNCLskWy 52 (105)
T 2o35_A 42 GFCRNCLSNWY 52 (105)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999883
No 350
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.71 E-value=24 Score=36.29 Aligned_cols=36 Identities=31% Similarity=0.768 Sum_probs=21.8
Q ss_pred hHHhHhcCC------------CCCCCCcccccc------hhhHHHHHHHHHHHh
Q 016307 113 CKACISRFK------------DCPLCGADIEKI------EADTTLQDVVDRFIE 148 (392)
Q Consensus 113 C~~Ci~~~~------------~CP~C~~~~~~~------~~n~~l~~lv~~~~~ 148 (392)
|..|..++. .||.|.=.+..+ ..+..+...++.++.
T Consensus 70 C~~C~~EY~dp~dRRfHAqp~aCp~CGP~l~~l~~~~~~~~~~~i~~aa~~L~~ 123 (657)
T 3ttc_A 70 CPACDKEYRDPLDRRFHAQPVACPECGPYLEWVSHGEHAEQEAALQAAIAQLKM 123 (657)
T ss_dssp CHHHHHHHHCTTSTTTTCTTCCCTTTSCCEEEEETTEEEEHHHHHHHHHHHHHT
T ss_pred ChHHHHHhCCCCCCcCcCCCCcCcccCccceEeecCCCCcchHHHHHHHHHHHc
Confidence 999987752 399998766221 123345555555554
No 351
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.71 E-value=19 Score=27.21 Aligned_cols=11 Identities=18% Similarity=1.081 Sum_probs=8.9
Q ss_pred cchHHhHhcCC
Q 016307 111 VYCKACISRFK 121 (392)
Q Consensus 111 ~fC~~Ci~~~~ 121 (392)
-||+.|+..|.
T Consensus 41 GFCRNCLskWy 51 (104)
T 3fyb_A 41 DFCRNCLAKWL 51 (104)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999998873
No 352
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.61 E-value=64 Score=20.19 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHH
Q 016307 270 EIIHTLSVSLNKIGDLKYYGGDLQAA 295 (392)
Q Consensus 270 e~~~~i~~~~~~l~~l~~~~g~l~~A 295 (392)
.+...|...+++|.+++.++.+++++
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777555555443
No 353
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=21.28 E-value=37 Score=35.56 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=28.5
Q ss_pred CceeccccccccccC---------ceeccccCcc--------------------hHHhHhcCC------------CCCCC
Q 016307 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++++ ..++.||..| |..|..++. .||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 345577777766632 2345677555 999987763 29999
Q ss_pred Ccccc
Q 016307 127 GADIE 131 (392)
Q Consensus 127 ~~~~~ 131 (392)
.=.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 76553
No 354
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=21.15 E-value=1.9e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 016307 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 271 ~~~~i~~~~~~l~~l~~~~g~l~~A~~~~e~sl~~~~~~ 309 (392)
+...+...+.-+..|..-.-.|++++..|++.+++.+..
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C 70 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVC 70 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444444444555444457999999999988876653
No 355
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.99 E-value=3.4e+02 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.070 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 016307 320 VLDVAVSLAKVADVDR--SIGNEDVAVDGFQ 348 (392)
Q Consensus 320 ~~dla~sl~~la~~~~--~~g~~~~A~~~~~ 348 (392)
+.+....|-+.+.|.. ..|.+++|.+.++
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLk 138 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILK 138 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3344444444444333 3477666665443
No 356
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.98 E-value=34 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.705 Sum_probs=22.2
Q ss_pred eeccccccccc---cCceeccccCcchHHhHhcC
Q 016307 90 LSCMICQALLF---ECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 l~C~iC~~~~~---~~p~~~~C~h~fC~~Ci~~~ 120 (392)
..|..|...|. ..--+..||..||..|....
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 46888887643 23556689999999997654
No 357
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.83 E-value=65 Score=21.70 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=22.6
Q ss_pred ceeccccccccccCceeccccCcchHHhHhc--------CCCCCCCCcc
Q 016307 89 PLSCMICQALLFECSKCTPCSHVYCKACISR--------FKDCPLCGAD 129 (392)
Q Consensus 89 ~l~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~--------~~~CP~C~~~ 129 (392)
...|.+|... -+-...-.|...|-..|+.. -|.||.|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457777653 11222334655666667653 2679999753
No 358
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.06 E-value=1.9e+02 Score=20.50 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=19.4
Q ss_pred CceeccccccccccCceeccccCcchHHh
Q 016307 88 GPLSCMICQALLFECSKCTPCSHVYCKAC 116 (392)
Q Consensus 88 ~~l~C~iC~~~~~~~p~~~~C~h~fC~~C 116 (392)
....|..|...+.-.++.=.|+..||..=
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cCccchhhcCcccccceEeccCCEecccc
Confidence 34679999865443345557999999643
Done!