Query 016308
Match_columns 392
No_of_seqs 201 out of 1396
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-100 3E-105 775.5 31.5 350 39-391 31-383 (524)
2 PLN02849 beta-glucosidase 100.0 7.9E-93 1.7E-97 734.7 31.7 324 27-357 14-337 (503)
3 PLN02998 beta-glucosidase 100.0 1.2E-92 2.7E-97 732.3 31.3 319 36-357 22-341 (497)
4 PLN02814 beta-glucosidase 100.0 4E-92 8.7E-97 729.6 29.3 313 39-357 22-335 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 4.5E-91 9.8E-96 701.0 29.4 302 43-358 2-309 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 5.2E-88 1.1E-92 696.4 30.2 302 42-358 3-323 (478)
7 TIGR01233 lacG 6-phospho-beta- 100.0 7.1E-88 1.5E-92 694.0 30.2 295 43-357 2-306 (467)
8 PRK13511 6-phospho-beta-galact 100.0 6.7E-88 1.5E-92 695.3 29.9 295 43-357 3-307 (469)
9 PRK09589 celA 6-phospho-beta-g 100.0 1.9E-87 4.2E-92 691.8 30.4 298 44-356 3-320 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 2.9E-88 6.4E-93 697.0 23.1 304 42-360 2-308 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 8.7E-87 1.9E-91 686.7 31.1 303 40-357 1-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 6.4E-86 1.4E-90 679.3 30.1 299 44-357 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 1.9E-84 4.2E-89 662.8 29.0 296 45-357 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 3.5E-12 7.6E-17 128.8 9.5 109 98-211 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 9.9E-12 2.2E-16 118.8 9.9 109 99-211 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3.2E-08 6.9E-13 94.9 8.9 83 119-210 1-85 (254)
17 COG1874 LacA Beta-galactosidas 98.5 2.3E-07 5E-12 99.3 7.4 106 100-210 32-163 (673)
18 COG2730 BglC Endoglucanase [Ca 98.2 4.2E-06 9E-11 85.8 9.6 110 101-210 76-193 (407)
19 PF07745 Glyco_hydro_53: Glyco 98.2 4.1E-05 8.8E-10 76.3 14.7 143 101-278 27-178 (332)
20 PF01229 Glyco_hydro_39: Glyco 98.0 2.6E-05 5.7E-10 81.7 9.5 106 100-211 41-168 (486)
21 PF00331 Glyco_hydro_10: Glyco 98.0 5.6E-05 1.2E-09 75.1 11.0 122 45-210 6-136 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.7 0.00017 3.8E-09 71.6 9.2 109 99-209 25-151 (319)
23 PLN03059 beta-galactosidase; P 97.5 0.00067 1.5E-08 74.5 10.6 108 99-209 60-188 (840)
24 PF13204 DUF4038: Protein of u 96.9 0.0068 1.5E-07 59.5 10.3 103 101-208 33-156 (289)
25 PF01373 Glyco_hydro_14: Glyco 96.9 0.0012 2.6E-08 67.0 5.0 99 97-199 15-144 (402)
26 PLN02803 beta-amylase 96.8 0.0047 1E-07 64.4 8.8 108 96-209 105-251 (548)
27 PLN00197 beta-amylase; Provisi 96.8 0.0056 1.2E-07 64.1 8.8 100 96-199 125-263 (573)
28 PLN02161 beta-amylase 96.7 0.0067 1.5E-07 63.0 9.1 102 94-199 113-253 (531)
29 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.0094 2E-07 58.3 9.3 92 97-208 35-132 (298)
30 PLN02801 beta-amylase 96.6 0.013 2.7E-07 61.0 9.6 100 96-199 35-173 (517)
31 PF14587 Glyco_hydr_30_2: O-Gl 96.5 0.0056 1.2E-07 61.9 6.5 100 109-210 58-185 (384)
32 COG3693 XynA Beta-1,4-xylanase 96.4 0.0094 2E-07 58.7 7.1 87 117-210 65-153 (345)
33 PLN02905 beta-amylase 96.3 0.023 4.9E-07 60.4 9.7 101 94-198 282-421 (702)
34 PLN02705 beta-amylase 96.2 0.018 4E-07 60.8 8.6 100 95-198 265-403 (681)
35 PRK10150 beta-D-glucuronidase; 96.0 0.026 5.6E-07 60.8 8.7 94 98-209 313-419 (604)
36 COG3867 Arabinogalactan endo-1 95.7 0.51 1.1E-05 46.4 15.5 135 43-209 33-182 (403)
37 PF14488 DUF4434: Domain of un 95.5 0.091 2E-06 47.4 9.2 103 99-209 21-131 (166)
38 KOG0496 Beta-galactosidase [Ca 94.7 0.14 3.1E-06 54.8 9.0 108 99-209 50-176 (649)
39 PRK09525 lacZ beta-D-galactosi 94.3 0.16 3.4E-06 58.3 8.9 91 96-209 369-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 93.5 0.27 5.9E-06 56.3 8.9 90 97-209 354-451 (1021)
41 COG3250 LacZ Beta-galactosidas 92.8 0.42 9.2E-06 53.2 8.8 90 94-209 317-408 (808)
42 COG3664 XynB Beta-xylosidase [ 91.7 0.31 6.6E-06 49.7 5.5 101 107-213 14-119 (428)
43 PF03198 Glyco_hydro_72: Gluca 90.6 1.3 2.8E-05 43.9 8.5 90 99-208 54-145 (314)
44 PF12891 Glyco_hydro_44: Glyco 90.1 4.1 9E-05 38.9 11.2 118 138-282 23-186 (239)
45 COG3934 Endo-beta-mannanase [C 89.7 0.15 3.2E-06 52.8 1.3 109 100-210 28-150 (587)
46 smart00642 Aamy Alpha-amylase 85.0 2.7 5.9E-05 37.7 6.4 65 95-160 16-91 (166)
47 PF10566 Glyco_hydro_97: Glyco 84.1 5.8 0.00013 38.7 8.7 120 71-194 9-149 (273)
48 PF07488 Glyco_hydro_67M: Glyc 83.8 7.3 0.00016 38.5 9.1 87 97-197 56-150 (328)
49 PF00128 Alpha-amylase: Alpha 80.5 3.1 6.8E-05 39.5 5.4 59 100-160 6-73 (316)
50 PLN02361 alpha-amylase 76.6 5.7 0.00012 40.9 6.2 65 95-159 26-96 (401)
51 cd07945 DRE_TIM_CMS Leptospira 75.8 8.5 0.00018 37.6 6.9 84 99-193 75-158 (280)
52 KOG2233 Alpha-N-acetylglucosam 75.6 7 0.00015 41.0 6.3 113 96-208 76-248 (666)
53 cd07939 DRE_TIM_NifV Streptomy 75.4 9 0.0002 36.7 6.9 80 100-193 71-150 (259)
54 cd03174 DRE_TIM_metallolyase D 74.9 10 0.00022 35.9 7.1 83 101-196 77-159 (265)
55 PLN00196 alpha-amylase; Provis 74.1 5.5 0.00012 41.4 5.3 64 96-159 42-112 (428)
56 PRK05799 coproporphyrinogen II 74.0 11 0.00024 37.9 7.6 104 100-220 98-204 (374)
57 PRK05692 hydroxymethylglutaryl 73.8 12 0.00026 36.7 7.4 87 99-194 80-167 (287)
58 PLN02746 hydroxymethylglutaryl 73.3 12 0.00026 37.8 7.4 85 100-193 123-208 (347)
59 TIGR02090 LEU1_arch isopropylm 71.2 12 0.00026 37.9 7.0 63 99-161 72-134 (363)
60 PRK13792 lysozyme inhibitor; P 68.6 4.4 9.6E-05 35.0 2.7 48 16-63 4-54 (127)
61 COG1523 PulA Type II secretory 68.0 11 0.00024 41.6 6.2 57 104-160 206-286 (697)
62 PRK14041 oxaloacetate decarbox 67.1 21 0.00046 37.6 7.9 97 96-210 88-209 (467)
63 PF12876 Cellulase-like: Sugar 66.8 3.2 7E-05 33.0 1.4 19 191-209 1-22 (88)
64 PRK12581 oxaloacetate decarbox 66.1 22 0.00048 37.4 7.8 57 96-166 98-159 (468)
65 cd07948 DRE_TIM_HCS Saccharomy 65.8 11 0.00023 36.5 5.1 61 100-160 73-133 (262)
66 cd07938 DRE_TIM_HMGL 3-hydroxy 65.3 25 0.00055 34.1 7.6 85 100-193 75-160 (274)
67 PRK14040 oxaloacetate decarbox 64.6 24 0.00053 38.2 8.0 98 96-211 90-212 (593)
68 TIGR01210 conserved hypothetic 64.5 51 0.0011 32.6 9.7 108 101-223 117-229 (313)
69 PF02638 DUF187: Glycosyl hydr 64.3 33 0.00072 34.0 8.3 99 98-196 19-154 (311)
70 PF14871 GHL6: Hypothetical gl 62.8 36 0.00078 29.4 7.3 54 102-160 4-65 (132)
71 PLN02784 alpha-amylase 62.0 18 0.00038 40.9 6.3 65 95-159 518-588 (894)
72 PF05089 NAGLU: Alpha-N-acetyl 61.7 19 0.00041 36.2 6.0 111 97-209 18-185 (333)
73 PRK09058 coproporphyrinogen II 61.4 44 0.00096 34.8 9.0 106 100-222 162-270 (449)
74 cd06543 GH18_PF-ChiA-like PF-C 61.3 40 0.00087 33.2 8.2 85 105-197 19-105 (294)
75 PRK09441 cytoplasmic alpha-amy 59.5 22 0.00048 37.3 6.4 66 95-160 19-102 (479)
76 PRK05402 glycogen branching en 59.4 64 0.0014 35.9 10.3 94 97-197 264-398 (726)
77 cd06592 GH31_glucosidase_KIAA1 58.6 56 0.0012 32.1 8.8 106 100-209 32-167 (303)
78 PRK12313 glycogen branching en 58.1 48 0.001 36.1 8.9 94 97-197 169-303 (633)
79 TIGR02402 trehalose_TreZ malto 57.8 68 0.0015 34.4 9.8 92 97-196 110-237 (542)
80 TIGR00433 bioB biotin syntheta 57.7 29 0.00063 33.5 6.6 56 100-159 122-178 (296)
81 cd07941 DRE_TIM_LeuA3 Desulfob 57.6 36 0.00078 32.9 7.1 82 101-193 81-162 (273)
82 COG3589 Uncharacterized conser 56.3 54 0.0012 33.0 8.0 71 102-187 20-90 (360)
83 cd06593 GH31_xylosidase_YicI Y 55.9 67 0.0015 31.4 8.8 106 100-208 26-160 (308)
84 cd02932 OYE_YqiM_FMN Old yello 55.3 2.2E+02 0.0048 28.2 15.3 56 107-163 42-101 (336)
85 cd07937 DRE_TIM_PC_TC_5S Pyruv 55.2 79 0.0017 30.6 9.1 68 100-193 93-160 (275)
86 TIGR02660 nifV_homocitr homoci 55.0 35 0.00075 34.5 6.8 61 100-160 74-134 (365)
87 TIGR02403 trehalose_treC alpha 54.8 30 0.00064 37.0 6.5 66 95-160 24-96 (543)
88 PRK03705 glycogen debranching 54.8 27 0.00059 38.4 6.3 55 104-160 185-263 (658)
89 PRK07379 coproporphyrinogen II 54.3 1E+02 0.0022 31.6 10.1 104 100-221 114-221 (400)
90 TIGR03471 HpnJ hopanoid biosyn 54.1 47 0.001 34.7 7.8 60 101-165 287-348 (472)
91 COG0821 gcpE 1-hydroxy-2-methy 53.9 94 0.002 31.3 9.3 88 90-192 76-163 (361)
92 PRK12331 oxaloacetate decarbox 53.9 56 0.0012 34.2 8.2 93 101-211 99-211 (448)
93 PRK10933 trehalose-6-phosphate 53.6 34 0.00074 36.7 6.8 64 95-160 30-102 (551)
94 PRK11858 aksA trans-homoaconit 53.6 43 0.00093 34.1 7.2 60 101-160 78-137 (378)
95 PRK09505 malS alpha-amylase; R 52.4 33 0.00072 37.9 6.5 61 100-160 232-313 (683)
96 PRK12858 tagatose 1,6-diphosph 52.3 65 0.0014 32.5 8.1 52 104-159 112-163 (340)
97 cd07944 DRE_TIM_HOA_like 4-hyd 51.8 63 0.0014 31.2 7.7 47 101-161 85-131 (266)
98 TIGR03581 EF_0839 conserved hy 50.3 55 0.0012 31.0 6.6 75 95-182 132-228 (236)
99 PRK08599 coproporphyrinogen II 49.7 1.1E+02 0.0025 30.7 9.6 97 100-213 99-198 (377)
100 TIGR02456 treS_nterm trehalose 49.0 48 0.001 35.4 7.0 64 97-160 27-97 (539)
101 COG3534 AbfA Alpha-L-arabinofu 48.7 93 0.002 32.6 8.6 94 100-208 50-174 (501)
102 PRK14705 glycogen branching en 48.4 83 0.0018 37.2 9.1 91 104-196 772-897 (1224)
103 cd06602 GH31_MGAM_SI_GAA This 48.1 96 0.0021 31.0 8.6 107 100-210 26-168 (339)
104 PLN02447 1,4-alpha-glucan-bran 47.7 32 0.00069 38.4 5.5 58 96-160 248-321 (758)
105 cd06591 GH31_xylosidase_XylS X 47.7 1.1E+02 0.0024 30.2 9.0 107 101-211 27-163 (319)
106 cd04733 OYE_like_2_FMN Old yel 47.3 3E+02 0.0065 27.3 14.8 152 122-298 63-246 (338)
107 TIGR01515 branching_enzym alph 47.1 1.5E+02 0.0032 32.3 10.5 101 97-197 155-289 (613)
108 TIGR03234 OH-pyruv-isom hydrox 47.0 55 0.0012 30.7 6.4 67 96-165 82-150 (254)
109 TIGR01108 oadA oxaloacetate de 46.9 80 0.0017 34.2 8.3 93 101-211 94-206 (582)
110 PRK00366 ispG 4-hydroxy-3-meth 46.8 1.1E+02 0.0024 31.1 8.6 72 108-191 98-169 (360)
111 TIGR00612 ispG_gcpE 1-hydroxy- 46.3 1.3E+02 0.0028 30.4 8.9 87 90-191 74-160 (346)
112 cd07940 DRE_TIM_IPMS 2-isoprop 46.3 62 0.0013 31.1 6.8 79 101-193 72-154 (268)
113 PRK14510 putative bifunctional 45.9 32 0.0007 40.6 5.4 59 102-160 191-268 (1221)
114 TIGR01211 ELP3 histone acetylt 45.7 1.2E+02 0.0026 32.5 9.3 106 101-223 206-316 (522)
115 PRK12399 tagatose 1,6-diphosph 45.7 1.1E+02 0.0024 30.7 8.3 58 104-165 111-168 (324)
116 PRK10785 maltodextrin glucosid 45.6 54 0.0012 35.6 6.8 55 99-160 180-247 (598)
117 PRK13523 NADPH dehydrogenase N 45.3 3.3E+02 0.0071 27.3 13.5 136 131-291 73-229 (337)
118 PRK04161 tagatose 1,6-diphosph 44.8 1.2E+02 0.0025 30.6 8.3 59 103-165 112-170 (329)
119 cd07947 DRE_TIM_Re_CS Clostrid 44.7 53 0.0011 32.1 6.0 60 100-159 76-135 (279)
120 PRK06294 coproporphyrinogen II 44.3 89 0.0019 31.6 7.8 95 100-211 102-199 (370)
121 COG5016 Pyruvate/oxaloacetate 44.1 95 0.0021 32.2 7.7 56 96-165 91-151 (472)
122 cd06598 GH31_transferase_CtsZ 44.0 1.4E+02 0.0031 29.4 9.1 110 100-211 26-168 (317)
123 PF03659 Glyco_hydro_71: Glyco 44.0 1E+02 0.0022 31.6 8.2 51 99-160 18-68 (386)
124 smart00729 Elp3 Elongator prot 42.8 1.7E+02 0.0036 25.5 8.7 58 98-159 97-157 (216)
125 cd07943 DRE_TIM_HOA 4-hydroxy- 42.6 96 0.0021 29.7 7.4 46 101-160 88-133 (263)
126 PRK08446 coproporphyrinogen II 42.3 1.4E+02 0.003 29.9 8.8 92 101-209 98-192 (350)
127 PRK09936 hypothetical protein; 42.2 1.7E+02 0.0038 28.9 9.0 62 100-170 40-101 (296)
128 cd06601 GH31_lyase_GLase GLase 41.4 98 0.0021 31.0 7.5 105 104-213 30-139 (332)
129 TIGR02100 glgX_debranch glycog 40.8 67 0.0015 35.6 6.7 57 104-160 190-266 (688)
130 PF04914 DltD_C: DltD C-termin 40.5 91 0.002 27.0 6.2 55 138-199 35-92 (130)
131 TIGR00539 hemN_rel putative ox 40.5 78 0.0017 31.8 6.7 92 100-209 99-194 (360)
132 cd02803 OYE_like_FMN_family Ol 40.2 2.6E+02 0.0056 27.3 10.3 152 123-298 62-238 (327)
133 cd06600 GH31_MGAM-like This fa 39.9 2E+02 0.0043 28.4 9.3 106 101-210 27-163 (317)
134 PRK08195 4-hyroxy-2-oxovalerat 39.8 75 0.0016 31.9 6.4 47 101-161 91-137 (337)
135 PRK05628 coproporphyrinogen II 39.1 2.2E+02 0.0048 28.6 9.8 103 100-221 107-214 (375)
136 PRK07094 biotin synthase; Prov 38.9 54 0.0012 32.2 5.2 62 99-165 127-190 (323)
137 cd06599 GH31_glycosidase_Aec37 38.3 2.2E+02 0.0047 28.1 9.4 110 100-210 31-171 (317)
138 PF02065 Melibiase: Melibiase; 38.1 2.1E+02 0.0046 29.4 9.4 91 100-196 60-183 (394)
139 PLN02389 biotin synthase 38.0 96 0.0021 31.7 6.9 59 98-160 175-234 (379)
140 TIGR02401 trehalose_TreY malto 37.6 77 0.0017 35.8 6.5 63 98-160 16-86 (825)
141 smart00812 Alpha_L_fucos Alpha 37.2 1E+02 0.0022 31.6 6.9 53 104-157 87-146 (384)
142 PTZ00445 p36-lilke protein; Pr 37.1 64 0.0014 30.5 5.0 56 104-160 35-99 (219)
143 cd06603 GH31_GANC_GANAB_alpha 36.6 1.5E+02 0.0032 29.6 7.9 109 100-211 26-166 (339)
144 TIGR01212 radical SAM protein, 36.4 2.2E+02 0.0049 27.9 9.1 73 138-223 162-234 (302)
145 PRK08208 coproporphyrinogen II 36.0 1.5E+02 0.0032 30.7 8.0 61 100-165 140-203 (430)
146 TIGR02104 pulA_typeI pullulana 35.9 73 0.0016 34.6 6.0 23 138-160 228-250 (605)
147 COG1501 Alpha-glucosidases, fa 35.6 1.1E+02 0.0023 34.5 7.2 100 110-213 294-421 (772)
148 PF00682 HMGL-like: HMGL-like 35.6 98 0.0021 28.8 6.1 80 101-194 66-149 (237)
149 KOG1065 Maltase glucoamylase a 35.3 1.5E+02 0.0033 33.3 8.2 104 102-212 315-453 (805)
150 TIGR03217 4OH_2_O_val_ald 4-hy 35.2 1.6E+02 0.0034 29.5 7.8 93 100-209 89-200 (333)
151 PRK14511 maltooligosyl trehalo 34.9 86 0.0019 35.7 6.4 56 98-160 20-90 (879)
152 PF03511 Fanconi_A: Fanconi an 34.5 30 0.00066 26.1 1.9 38 122-162 19-56 (64)
153 TIGR02629 L_rham_iso_rhiz L-rh 34.3 1.6E+02 0.0035 30.6 7.7 88 100-202 72-170 (412)
154 PRK14706 glycogen branching en 33.8 2.1E+02 0.0046 31.4 9.1 91 105-197 175-300 (639)
155 COG0366 AmyA Glycosidases [Car 33.3 77 0.0017 32.6 5.5 51 102-159 33-97 (505)
156 PF01055 Glyco_hydro_31: Glyco 33.2 1.8E+02 0.0038 29.9 8.1 108 100-211 45-184 (441)
157 COG2100 Predicted Fe-S oxidore 32.6 1.8E+02 0.004 29.4 7.5 83 94-192 197-284 (414)
158 PRK08255 salicylyl-CoA 5-hydro 32.5 7.5E+02 0.016 27.6 16.2 216 105-347 438-717 (765)
159 cd06542 GH18_EndoS-like Endo-b 32.4 1.4E+02 0.003 28.1 6.7 55 138-196 50-104 (255)
160 PRK12568 glycogen branching en 32.3 85 0.0018 35.0 5.8 59 97-160 268-340 (730)
161 TIGR02026 BchE magnesium-proto 32.2 1.6E+02 0.0035 31.0 7.7 61 100-165 286-348 (497)
162 PF01261 AP_endonuc_2: Xylose 32.1 42 0.0009 29.8 2.9 63 96-158 69-131 (213)
163 PLN02960 alpha-amylase 32.1 75 0.0016 36.1 5.3 96 95-197 413-550 (897)
164 PRK09432 metF 5,10-methylenete 32.0 1.5E+02 0.0033 29.2 7.0 75 138-212 188-284 (296)
165 PRK09282 pyruvate carboxylase 31.9 1.9E+02 0.004 31.5 8.2 94 100-211 98-211 (592)
166 PRK12330 oxaloacetate decarbox 31.6 1.8E+02 0.0039 31.0 7.8 94 101-211 100-214 (499)
167 PRK14507 putative bifunctional 31.6 1.5E+02 0.0034 36.2 8.0 57 97-160 757-828 (1693)
168 cd06565 GH20_GcnA-like Glycosy 30.6 1.8E+02 0.0038 28.6 7.2 62 100-168 19-86 (301)
169 PRK09856 fructoselysine 3-epim 30.3 64 0.0014 30.6 4.0 61 96-158 88-148 (275)
170 cd02742 GH20_hexosaminidase Be 30.1 1.5E+02 0.0033 29.0 6.7 62 100-167 18-97 (303)
171 cd08576 GDPD_like_SMaseD_PLD G 29.6 5.4E+02 0.012 25.1 10.4 106 99-210 8-126 (265)
172 PRK11572 copper homeostasis pr 28.9 1.7E+02 0.0037 28.2 6.6 44 95-148 70-113 (248)
173 PRK05660 HemN family oxidoredu 28.5 3E+02 0.0066 27.8 8.7 93 100-209 106-201 (378)
174 PF04055 Radical_SAM: Radical 28.3 96 0.0021 25.9 4.4 53 101-156 90-144 (166)
175 TIGR02635 RhaI_grampos L-rhamn 28.1 3.2E+02 0.007 28.0 8.8 86 101-202 43-136 (378)
176 cd02874 GH18_CFLE_spore_hydrol 27.8 1.7E+02 0.0037 28.5 6.6 84 104-196 16-103 (313)
177 PRK09249 coproporphyrinogen II 27.7 2.6E+02 0.0056 29.1 8.2 61 100-165 150-213 (453)
178 PRK09389 (R)-citramalate synth 27.5 97 0.0021 32.8 5.1 108 100-211 75-200 (488)
179 TIGR00542 hxl6Piso_put hexulos 27.3 1E+02 0.0022 29.4 4.9 62 96-159 92-153 (279)
180 PF10566 Glyco_hydro_97: Glyco 27.2 1.1E+02 0.0025 29.8 5.1 60 101-172 109-168 (273)
181 PRK06256 biotin synthase; Vali 26.6 1.1E+02 0.0024 30.2 5.1 57 99-159 150-207 (336)
182 PRK13398 3-deoxy-7-phosphohept 26.2 2.3E+02 0.0049 27.5 7.0 72 93-168 36-107 (266)
183 TIGR00423 radical SAM domain p 26.1 3.3E+02 0.0071 26.7 8.3 58 100-165 106-170 (309)
184 cd06545 GH18_3CO4_chitinase Th 25.8 1.9E+02 0.0042 27.3 6.4 74 117-196 26-99 (253)
185 cd02933 OYE_like_FMN Old yello 25.8 6.8E+02 0.015 25.0 16.1 191 131-347 69-314 (338)
186 PRK12677 xylose isomerase; Pro 25.3 6.2E+02 0.013 25.9 10.3 91 100-198 33-129 (384)
187 TIGR00538 hemN oxygen-independ 25.3 1.4E+02 0.0029 31.2 5.6 61 100-165 150-213 (455)
188 KOG0470 1,4-alpha-glucan branc 24.6 92 0.002 34.5 4.2 65 97-161 253-333 (757)
189 COG0635 HemN Coproporphyrinoge 23.9 6.7E+02 0.015 25.9 10.4 102 101-219 137-241 (416)
190 cd06595 GH31_xylosidase_XylS-l 23.8 6E+02 0.013 24.6 9.6 110 101-211 28-163 (292)
191 PRK01060 endonuclease IV; Prov 23.7 3.8E+02 0.0082 25.3 8.1 50 100-155 14-63 (281)
192 cd01335 Radical_SAM Radical SA 23.5 2.4E+02 0.0051 24.1 6.1 59 100-160 87-146 (204)
193 PLN02925 4-hydroxy-3-methylbut 23.2 2.4E+02 0.0052 31.3 7.0 53 140-193 211-263 (733)
194 PRK14042 pyruvate carboxylase 23.1 3.4E+02 0.0074 29.6 8.2 97 96-211 89-211 (596)
195 PRK05904 coproporphyrinogen II 23.0 5.3E+02 0.011 25.9 9.3 91 101-210 103-198 (353)
196 PRK08207 coproporphyrinogen II 22.8 92 0.002 33.0 3.8 92 101-209 269-363 (488)
197 PRK06582 coproporphyrinogen II 22.5 5.8E+02 0.013 26.0 9.5 95 101-212 111-207 (390)
198 TIGR00677 fadh2_euk methylenet 22.2 3.3E+02 0.0072 26.5 7.3 73 138-210 173-267 (281)
199 PF01120 Alpha_L_fucos: Alpha- 22.1 1.7E+02 0.0036 29.4 5.4 63 100-163 91-162 (346)
200 PF06134 RhaA: L-rhamnose isom 21.8 7.2E+02 0.016 25.8 9.6 146 19-203 25-185 (417)
201 PRK13210 putative L-xylulose 5 21.7 1.4E+02 0.003 28.3 4.6 61 97-160 93-154 (284)
202 PRK13347 coproporphyrinogen II 21.6 1.8E+02 0.004 30.2 5.8 60 100-165 151-214 (453)
203 PRK09997 hydroxypyruvate isome 21.5 2.6E+02 0.0057 26.2 6.4 64 99-165 86-151 (258)
204 PRK09240 thiH thiamine biosynt 21.4 8.4E+02 0.018 24.6 10.4 96 98-210 160-262 (371)
205 PF13812 PPR_3: Pentatricopept 21.4 94 0.002 18.8 2.3 15 141-155 20-34 (34)
206 cd06525 GH25_Lyc-like Lyc mura 21.4 5.9E+02 0.013 22.7 9.1 50 103-165 13-62 (184)
207 PRK10426 alpha-glucosidase; Pr 21.3 6.9E+02 0.015 27.4 10.3 106 100-208 223-364 (635)
208 PF04551 GcpE: GcpE protein; 21.3 6.2E+02 0.013 25.8 9.1 57 101-170 34-91 (359)
209 TIGR02631 xylA_Arthro xylose i 21.2 6.6E+02 0.014 25.6 9.6 92 99-198 33-130 (382)
210 cd06604 GH31_glucosidase_II_Ma 21.1 5.3E+02 0.012 25.5 8.8 106 101-211 27-163 (339)
211 COG3280 TreY Maltooligosyl tre 21.0 2.1E+02 0.0046 32.1 6.1 60 100-160 21-89 (889)
212 cd06589 GH31 The enzymes of gl 21.0 3E+02 0.0066 26.2 6.8 91 100-211 26-120 (265)
213 PF02057 Glyco_hydro_59: Glyco 20.9 1.7E+02 0.0037 32.2 5.4 65 143-210 116-185 (669)
214 PTZ00445 p36-lilke protein; Pr 20.9 1.8E+02 0.0039 27.6 4.9 64 139-208 29-102 (219)
215 PF04646 DUF604: Protein of un 20.7 41 0.00088 32.5 0.6 77 143-222 72-148 (255)
216 TIGR02351 thiH thiazole biosyn 20.6 7.1E+02 0.015 25.1 9.6 99 97-209 158-260 (366)
217 PRK09057 coproporphyrinogen II 20.6 2.2E+02 0.0048 28.8 6.0 96 100-212 103-200 (380)
218 cd06568 GH20_SpHex_like A subg 20.4 3.5E+02 0.0077 26.9 7.3 64 99-168 19-101 (329)
219 PRK08508 biotin synthase; Prov 20.1 2.2E+02 0.0048 27.5 5.6 80 100-198 101-181 (279)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-100 Score=775.51 Aligned_cols=350 Identities=54% Similarity=0.957 Sum_probs=327.6
Q ss_pred CCCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecccC-CCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEe
Q 016308 39 SLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHT-PGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRF 117 (392)
Q Consensus 39 ~~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~ 117 (392)
.+.+..||++|+||+||||||+|||+++|||++|+||++++. ++++.++.++++|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 577899999999999999999999999999999999999984 4466777889999999999999999999999999999
Q ss_pred ccccccccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016308 118 SISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 118 si~WsRi~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (392)
||+||||+|.|+ .+.+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999986 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe
Q 016308 197 DRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIIL 276 (392)
Q Consensus 197 d~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~ 276 (392)
|+||+|+|||||++++..||..|..|||+|+.+..+|..|++.++.|.|.|||++|||+||++||+.++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999998778999999999999999999999999999999998888999999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccCCCCCHhHHHHhcCCccEEeecccccceecc
Q 016308 277 NTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQD 356 (392)
Q Consensus 277 ~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~lp~~t~~D~~~ikg~~DFiGvNYYts~~V~~ 356 (392)
+..|+.|.+.+++|.+||+|+.+|..+|+++|++.|+||+.|++.++.|||+||++|.++|||+.||||||||++.+|++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999998
Q ss_pred CcCCCCCCCCCCCCCCCceEeccccCC-cccCCCCC
Q 016308 357 CIFSACKPGPGASKTEGFCLQNSQKHG-VPLGEPVS 391 (392)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~g~~~~ 391 (392)
...+.+. +.+.+.+|..+.. +.+| ..+|+.+.
T Consensus 351 ~~~~~~~-~~~~~~~d~~~~~--~~~~~~~~~~~~~ 383 (524)
T KOG0626|consen 351 LKPPPDP-SQPGWSTDSGVDW--TLEGNDLIGPKAG 383 (524)
T ss_pred cCCCCCC-CCcccccccceee--eeccccccccccc
Confidence 7654332 3456778888877 4455 77777653
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=7.9e-93 Score=734.68 Aligned_cols=324 Identities=46% Similarity=0.902 Sum_probs=296.4
Q ss_pred cccccccccccCCCCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHH
Q 016308 27 LFISCDQTTLKQSLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDL 106 (392)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l 106 (392)
+.+.|+.- +..+++.+||++|+||+||||+||||++++|||++|+||.+++.+ ++.++++||||||||+|||+|
T Consensus 14 ~~~~~~~~--~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~L 87 (503)
T PLN02849 14 LALSSGKC--SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKL 87 (503)
T ss_pred Hhcccccc--cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHH
Confidence 44567754 446888999999999999999999999999999999999998744 245778999999999999999
Q ss_pred HHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHH
Q 016308 107 MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGY 186 (392)
Q Consensus 107 ~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ 186 (392)
||+||+++|||||+|+||+|+|. |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++
T Consensus 88 m~~lG~~aYRfSIsWsRI~P~G~-g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~ 166 (503)
T PLN02849 88 MVETGLDAFRFSISWSRLIPNGR-GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTA 166 (503)
T ss_pred HHHcCCCeEEEeccHHhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHH
Confidence 99999999999999999999987 89999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHhCCcceEEEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016308 187 FADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQK 266 (392)
Q Consensus 187 ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~ 266 (392)
||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|..+++.++.++++||+++|||+||+++|++++.
T Consensus 167 YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~ 246 (503)
T PLN02849 167 YADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKD 246 (503)
T ss_pred HHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999643111134434445678999999999999999999997544
Q ss_pred CCCCcEEEEecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccCCCCCHhHHHHhcCCccEEee
Q 016308 267 DQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGI 346 (392)
Q Consensus 267 ~~~~kVGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~lp~~t~~D~~~ikg~~DFiGv 346 (392)
.|+++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++|||||
T Consensus 247 ~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGi 326 (503)
T PLN02849 247 MQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGV 326 (503)
T ss_pred CCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEE
Confidence 57899999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cccccceeccC
Q 016308 347 NHYTSTYVQDC 357 (392)
Q Consensus 347 NYYts~~V~~~ 357 (392)
|||+|.+|+..
T Consensus 327 NyYt~~~v~~~ 337 (503)
T PLN02849 327 IHYLAASVTNI 337 (503)
T ss_pred eccchhhcccC
Confidence 99999999864
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.2e-92 Score=732.25 Aligned_cols=319 Identities=48% Similarity=0.926 Sum_probs=292.8
Q ss_pred ccCCCCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCee
Q 016308 36 LKQSLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSY 115 (392)
Q Consensus 36 ~~~~~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~ 115 (392)
.+..|.+.+||++|+||+||||+||||++++||||+|+||.+.+ ++ .....++++||||||||+|||+|||+||+++|
T Consensus 22 ~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~Y 99 (497)
T PLN02998 22 SSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAY 99 (497)
T ss_pred ccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeE
Confidence 33447788999999999999999999999999999999999987 33 22224778999999999999999999999999
Q ss_pred EeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHh
Q 016308 116 RFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSF 195 (392)
Q Consensus 116 R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~f 195 (392)
||||+|+||+|+|. |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|+++|
T Consensus 100 RfSIsWsRI~P~G~-g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~f 178 (497)
T PLN02998 100 RFSISWSRLLPSGR-GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEF 178 (497)
T ss_pred EeeccHHhcCcCCC-CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHh
Confidence 99999999999987 88999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCcceEEEEecccchhhhcccccCCCCCCCCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEE
Q 016308 196 GDRVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFG-NCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGI 274 (392)
Q Consensus 196 gd~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi 274 (392)
||+|++|+|||||++++..||..|.+|||.+..... .|..+++.++.+|++||+++|||+||+++|+.++..++++||+
T Consensus 179 gdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi 258 (497)
T PLN02998 179 GDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGI 258 (497)
T ss_pred cCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 999999999999999999999999999996432110 3555555567899999999999999999999765567899999
Q ss_pred EecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccCCCCCHhHHHHhcCCccEEeeccccccee
Q 016308 275 ILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYV 354 (392)
Q Consensus 275 ~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~lp~~t~~D~~~ikg~~DFiGvNYYts~~V 354 (392)
+++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++||||||||+|.+|
T Consensus 259 ~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v 338 (497)
T PLN02998 259 SVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYV 338 (497)
T ss_pred EEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccc
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccC
Q 016308 355 QDC 357 (392)
Q Consensus 355 ~~~ 357 (392)
+..
T Consensus 339 ~~~ 341 (497)
T PLN02998 339 KDN 341 (497)
T ss_pred ccC
Confidence 864
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=4e-92 Score=729.55 Aligned_cols=313 Identities=45% Similarity=0.882 Sum_probs=288.8
Q ss_pred CCCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEec
Q 016308 39 SLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFS 118 (392)
Q Consensus 39 ~~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~s 118 (392)
.|.+.+||++|+||+||||||+||+++++|||+|+||.+++. .++.++++||||||||+|||+|||+||+++||||
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfS 97 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFS 97 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEe
Confidence 477789999999999999999999999999999999998762 2345788999999999999999999999999999
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCc
Q 016308 119 ISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 119 i~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~ 198 (392)
|+||||+|+|+ |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|+++|||+
T Consensus 98 IsWsRI~P~G~-g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdr 176 (504)
T PLN02814 98 ISWSRLIPNGR-GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGED 176 (504)
T ss_pred ccHhhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCc
Confidence 99999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccchhhhcccccCCCCCCCCCCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEec
Q 016308 199 VKYWFTINEPNMQVTLSYRLGCHPPAHCSQP-FGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILN 277 (392)
Q Consensus 199 V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~ 277 (392)
|++|+|||||++++..||..|.. ||.+... ..+|..+++.++.++++||+++|||+||+++|++++..|+++||++++
T Consensus 177 Vk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~ 255 (504)
T PLN02814 177 VKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIF 255 (504)
T ss_pred CCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe
Confidence 99999999999999999999885 8754420 014543444567899999999999999999999765568899999999
Q ss_pred CcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccCCCCCHhHHHHhcCCccEEeecccccceeccC
Q 016308 278 TLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDC 357 (392)
Q Consensus 278 ~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~lp~~t~~D~~~ikg~~DFiGvNYYts~~V~~~ 357 (392)
..++||++++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++||||||||+|.+|+..
T Consensus 256 ~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 256 AFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 99999999999999999999999899999999999999999999998999999999999999999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-91 Score=701.00 Aligned_cols=302 Identities=42% Similarity=0.779 Sum_probs=284.1
Q ss_pred CCCCCCCEEeeeeccccccCcccCCCCccceeeeccc--CCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEeccc
Q 016308 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTH--TPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSIS 120 (392)
Q Consensus 43 ~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~ 120 (392)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .++.+..+..++.||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 5799999999999999999999999999999999998 46677777889999999999999999999999999999999
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 016308 121 WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVK 200 (392)
Q Consensus 121 WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~ 200 (392)
||||+|++..+++|++||+||+++|++|+++||+|+|||+|||+|+||.++||||.||+++++|++||+.||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998634899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcc
Q 016308 201 YWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLW 280 (392)
Q Consensus 201 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~ 280 (392)
+|+||||||+++..||+.|.+||+..+ .++++|++||+++|||+||+++|++. ++.|||||++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999998754 37899999999999999999999974 3349999999999
Q ss_pred cccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhcc--CCCCCHhHHHHhc-CCccEEeecccc-cceecc
Q 016308 281 FEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLK-QGLDFIGINHYT-STYVQD 356 (392)
Q Consensus 281 ~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--lp~~t~~D~~~ik-g~~DFiGvNYYt-s~~V~~ 356 (392)
.||.|++|+|+.||++++++.+++|+||+++|+||.++.+++++. +|+++++|+++|| +++||||||||+ +++++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999874 7999999999997 789999999999 666665
Q ss_pred Cc
Q 016308 357 CI 358 (392)
Q Consensus 357 ~~ 358 (392)
..
T Consensus 308 ~~ 309 (460)
T COG2723 308 EP 309 (460)
T ss_pred cC
Confidence 54
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.2e-88 Score=696.40 Aligned_cols=302 Identities=31% Similarity=0.532 Sum_probs=273.1
Q ss_pred CCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcC--C----------C--CCCCccCccccccHHHHHHH
Q 016308 42 PSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNID--D----------G--SSGDVAVDHYHRYLEDIDLM 107 (392)
Q Consensus 42 ~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~~y~eDi~l~ 107 (392)
..+||++|+||+||||+||||++++||||+|+||++.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45799999999999999999999999999999999887555431 1 1 15788999999999999999
Q ss_pred HHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHH
Q 016308 108 ESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYF 187 (392)
Q Consensus 108 k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 187 (392)
|+||+++|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999753679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcceEEEEecccchhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016308 188 ADICFKSFGDRVKYWFTINEPNMQVTLSYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQ 265 (392)
Q Consensus 188 a~~~~~~fgd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~ 265 (392)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... .++.++++||+++|||+||+++|+.
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~-- 229 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEV-- 229 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999988886 443 3666421 2568999999999999999999985
Q ss_pred CCCCCcEEEEecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhc--cCCCCCHhHHHHhc-CCcc
Q 016308 266 KDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGS--TLPKFSSRDKEKLK-QGLD 342 (392)
Q Consensus 266 ~~~~~kVGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~--~lp~~t~~D~~~ik-g~~D 342 (392)
.|++|||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|++++++ ..|.|+++|+++|| +++|
T Consensus 230 -~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~D 307 (478)
T PRK09593 230 -DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVD 307 (478)
T ss_pred -CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 47899999999999999999999999999887 4578999999999999999999975 36889999999996 9999
Q ss_pred EEeecccccceeccCc
Q 016308 343 FIGINHYTSTYVQDCI 358 (392)
Q Consensus 343 FiGvNYYts~~V~~~~ 358 (392)
|||||||+|.+|+..+
T Consensus 308 FlGiNyYt~~~v~~~~ 323 (478)
T PRK09593 308 FISFSYYSSRVASGDP 323 (478)
T ss_pred EEEEecccCcccccCC
Confidence 9999999999998643
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=7.1e-88 Score=694.01 Aligned_cols=295 Identities=35% Similarity=0.615 Sum_probs=273.6
Q ss_pred CCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEeccccc
Q 016308 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWA 122 (392)
Q Consensus 43 ~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~Ws 122 (392)
.+||++|+||+||||+||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 45999999999999999999999999999999998764443 36689999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceEE
Q 016308 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYW 202 (392)
Q Consensus 123 Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w 202 (392)
||+|+|. |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||+ |++|
T Consensus 78 RI~P~g~-~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~W 154 (467)
T TIGR01233 78 RIFPTGY-GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYW 154 (467)
T ss_pred hccCCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 9999987 89999999999999999999999999999999999999976 9999999999999999999999998 9999
Q ss_pred EEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcccc
Q 016308 203 FTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFE 282 (392)
Q Consensus 203 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~~y 282 (392)
+||||||+++..||+.|.+|||.+.. .++.+|++||+++|||+||+++|++ .++++||++++..++|
T Consensus 155 iT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~ 221 (467)
T TIGR01233 155 TTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKY 221 (467)
T ss_pred EEecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeE
Confidence 99999999999999999999996321 1468999999999999999999996 4789999999999999
Q ss_pred cCC-CCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhcc------CCCCCHhHHHHh---cCCccEEeecccccc
Q 016308 283 PIS-SSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST------LPKFSSRDKEKL---KQGLDFIGINHYTST 352 (392)
Q Consensus 283 P~s-~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~------lp~~t~~D~~~i---kg~~DFiGvNYYts~ 352 (392)
|++ ++|+|++||++++++.++||+||+++|+||+.|++.++.+ .|.++++|+++| ++++||||||||+|.
T Consensus 222 P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~ 301 (467)
T TIGR01233 222 PYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSD 301 (467)
T ss_pred ECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccce
Confidence 998 9999999999999888999999999999999999988632 377999999999 589999999999999
Q ss_pred eeccC
Q 016308 353 YVQDC 357 (392)
Q Consensus 353 ~V~~~ 357 (392)
+|+..
T Consensus 302 ~v~~~ 306 (467)
T TIGR01233 302 WMQAF 306 (467)
T ss_pred eeccC
Confidence 99853
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=6.7e-88 Score=695.26 Aligned_cols=295 Identities=36% Similarity=0.641 Sum_probs=274.0
Q ss_pred CCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEeccccc
Q 016308 43 SPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWA 122 (392)
Q Consensus 43 ~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~Ws 122 (392)
.+||++|+||+||||+|+||++++||||+|+||++++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 469999999999999999999999999999999998755542 6789999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceEE
Q 016308 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYW 202 (392)
Q Consensus 123 Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w 202 (392)
||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|
T Consensus 79 RI~P~G~-g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGY-GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 9999987 89999999999999999999999999999999999999976 9999999999999999999999999 9999
Q ss_pred EEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcccc
Q 016308 203 FTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFE 282 (392)
Q Consensus 203 ~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~~y 282 (392)
+|||||++++..||..|.+|||++.. .++.++++||+++|||+||+++|++ .++++||++++..++|
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~ 222 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKY 222 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEe
Confidence 99999999999999999999996421 1468999999999999999999986 3789999999999999
Q ss_pred cCC-CCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhc------cCCCCCHhHHHHhc---CCccEEeecccccc
Q 016308 283 PIS-SSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGS------TLPKFSSRDKEKLK---QGLDFIGINHYTST 352 (392)
Q Consensus 283 P~s-~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~------~lp~~t~~D~~~ik---g~~DFiGvNYYts~ 352 (392)
|.+ ++|+|++||++++++.++||+||+++|+||+.|++.+++ ..++|+++|+++|| +++||||||||+|.
T Consensus 223 P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~ 302 (469)
T PRK13511 223 PIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSD 302 (469)
T ss_pred eCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcc
Confidence 999 999999999999999999999999999999999988752 12479999999996 46899999999999
Q ss_pred eeccC
Q 016308 353 YVQDC 357 (392)
Q Consensus 353 ~V~~~ 357 (392)
+|+..
T Consensus 303 ~v~~~ 307 (469)
T PRK13511 303 WMRAY 307 (469)
T ss_pred eeecC
Confidence 99863
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.9e-87 Score=691.80 Aligned_cols=298 Identities=33% Similarity=0.588 Sum_probs=267.1
Q ss_pred CCCCCCEEeeeeccccccCcccCCCCccceeeecc---c-CCCCcC----CCC--CCCccCccccccHHHHHHHHHcCCC
Q 016308 44 PFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFT---H-TPGNID----DGS--SGDVAVDHYHRYLEDIDLMESLGVN 113 (392)
Q Consensus 44 ~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~~y~eDi~l~k~lG~~ 113 (392)
+||++|+||+||||+||||++++||||+|+||.++ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 3 234332 222 5788999999999999999999999
Q ss_pred eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 016308 114 SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFK 193 (392)
Q Consensus 114 ~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 193 (392)
+|||||+||||+|+|..|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999753569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceEEEEecccchhhhc-----ccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016308 194 SFGDRVKYWFTINEPNMQVTL-----SYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQK 266 (392)
Q Consensus 194 ~fgd~V~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~ 266 (392)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....+|++||+++|||+||+++|++.
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998776 443 333 255531 124579999999999999999999863
Q ss_pred CCCCcEEEEecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhcc--CCCCCHhHHHHh-cCCccE
Q 016308 267 DQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKL-KQGLDF 343 (392)
Q Consensus 267 ~~~~kVGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--lp~~t~~D~~~i-kg~~DF 343 (392)
+++|||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|+++++++ .|.|+++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 678999999999999999999999999998854 679999999999999999999863 478999999999 599999
Q ss_pred Eeecccccceecc
Q 016308 344 IGINHYTSTYVQD 356 (392)
Q Consensus 344 iGvNYYts~~V~~ 356 (392)
||||||+|.+|+.
T Consensus 308 lGiNyYts~~v~~ 320 (476)
T PRK09589 308 IGFSYYMSFATKF 320 (476)
T ss_pred EEEecccCccccc
Confidence 9999999999975
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2.9e-88 Score=696.97 Aligned_cols=304 Identities=53% Similarity=0.937 Sum_probs=278.6
Q ss_pred CCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEecccc
Q 016308 42 PSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISW 121 (392)
Q Consensus 42 ~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~W 121 (392)
+.+||++|+||+||||+||||++++|||++|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 35799999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceE
Q 016308 122 ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKY 201 (392)
Q Consensus 122 sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~ 201 (392)
+||+|+|..|.+|++|+++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998339999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCccc
Q 016308 202 WFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWF 281 (392)
Q Consensus 202 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~~ 281 (392)
|+|||||++++..||+.|.+|||..+ .++.++++||+++|||+||+++|+++ +++|||++++..++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~ 226 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPF 226 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccccc
Confidence 99999999999999999999999644 37889999999999999999999975 78999999999999
Q ss_pred ccCCCCHHHH-HHHHHHHhhhcccccccccccccCHHHHHHhhcc--CCCCCHhHHHHhcCCccEEeecccccceeccCc
Q 016308 282 EPISSSTADK-LAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLKQGLDFIGINHYTSTYVQDCI 358 (392)
Q Consensus 282 yP~s~~p~D~-~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--lp~~t~~D~~~ikg~~DFiGvNYYts~~V~~~~ 358 (392)
+|.+++++|+ .||++.+++.++||+||+++|+||..|+.+++++ +|.||++|++.|++++||||||||+|.+|+..+
T Consensus 227 ~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 227 YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 9999998777 8889999999999999999999999999999987 999999999999999999999999999999877
Q ss_pred CC
Q 016308 359 FS 360 (392)
Q Consensus 359 ~~ 360 (392)
..
T Consensus 307 ~~ 308 (455)
T PF00232_consen 307 NP 308 (455)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=8.7e-87 Score=686.68 Aligned_cols=303 Identities=31% Similarity=0.538 Sum_probs=270.5
Q ss_pred CCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecc---c-CCCCcC----CC--CCCCccCccccccHHHHHHHHH
Q 016308 40 LDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFT---H-TPGNID----DG--SSGDVAVDHYHRYLEDIDLMES 109 (392)
Q Consensus 40 ~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~~y~eDi~l~k~ 109 (392)
|++.+||++|+||+||||+|+||++++||||+|+||+++ + .++++. .+ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 456789999999999999999999999999999999988 3 234331 22 2678899999999999999999
Q ss_pred cCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHH
Q 016308 110 LGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFAD 189 (392)
Q Consensus 110 lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 189 (392)
||+|+|||||+|+||+|+|..|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999975467999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceEEEEecccchh-----hhccccc-CCC-CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016308 190 ICFKSFGDRVKYWFTINEPNMQ-----VTLSYRL-GCH-PPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRT 262 (392)
Q Consensus 190 ~~~~~fgd~V~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re 262 (392)
+|+++|||+|++|+||||||++ +..||.. |.+ ||+.. ...+.+|++||+++|||+||+++|+
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6778874 664 44321 1245899999999999999999998
Q ss_pred hhcCCCCCcEEEEecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccC--CCCCHhHHHHh-cC
Q 016308 263 KYQKDQGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTL--PKFSSRDKEKL-KQ 339 (392)
Q Consensus 263 ~~~~~~~~kVGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~l--p~~t~~D~~~i-kg 339 (392)
+. +++|||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|+++++++. |.++++|+++| ++
T Consensus 230 ~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~ 305 (477)
T PRK15014 230 IN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG 305 (477)
T ss_pred hC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 64 68999999999999999999999999998763 23359999999999999999998754 78999999999 59
Q ss_pred CccEEeecccccceeccC
Q 016308 340 GLDFIGINHYTSTYVQDC 357 (392)
Q Consensus 340 ~~DFiGvNYYts~~V~~~ 357 (392)
++||||||||+|.+|+..
T Consensus 306 ~~DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 306 TCDYLGFSYYMTNAVKAE 323 (477)
T ss_pred CCCEEEEcceeCeeeccC
Confidence 999999999999999853
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.4e-86 Score=679.30 Aligned_cols=299 Identities=31% Similarity=0.542 Sum_probs=273.6
Q ss_pred CCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcC------------CCC--CCCccCccccccHHHHHHHHH
Q 016308 44 PFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNID------------DGS--SGDVAVDHYHRYLEDIDLMES 109 (392)
Q Consensus 44 ~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~~y~eDi~l~k~ 109 (392)
+||++|+||+||||+|+||++++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999987555442 222 568899999999999999999
Q ss_pred cCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHH
Q 016308 110 LGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFAD 189 (392)
Q Consensus 110 lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 189 (392)
||+|+|||||+|+||+|++..+.+|++|+++|+++|++|+++||+|+|||+|||+|+||++++|||+++++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975367899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceEEEEecccchhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016308 190 ICFKSFGDRVKYWFTINEPNMQVTLSYR-LGC-HPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKD 267 (392)
Q Consensus 190 ~~~~~fgd~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~ 267 (392)
.|+++|||+|++|+||||||+++..||. .|. +|||... .+..+|++||+++|||+||+++|++.
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 564 4786422 24579999999999999999999864
Q ss_pred CCCcEEEEecCcccccCCCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhcc--CCCCCHhHHHHhcCCccEEe
Q 016308 268 QGGSIGIILNTLWFEPISSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGST--LPKFSSRDKEKLKQGLDFIG 345 (392)
Q Consensus 268 ~~~kVGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--lp~~t~~D~~~ikg~~DFiG 345 (392)
++++||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|+++++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6799999999999999999999999999877 45889999999999999999999864 68999999999999999999
Q ss_pred ecccccceeccC
Q 016308 346 INHYTSTYVQDC 357 (392)
Q Consensus 346 vNYYts~~V~~~ 357 (392)
||||+|.+|+..
T Consensus 308 iNyYt~~~v~~~ 319 (474)
T PRK09852 308 FSYYASRCASAE 319 (474)
T ss_pred EccccCeecccC
Confidence 999999999863
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.9e-84 Score=662.79 Aligned_cols=296 Identities=47% Similarity=0.875 Sum_probs=279.7
Q ss_pred CCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEeccccccc
Q 016308 45 FPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARI 124 (392)
Q Consensus 45 fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi 124 (392)
||++|+||+||||+|+||+++++|||+|+||.+.+.++++.++.++++||||||||+|||++||++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988667665666888999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEE
Q 016308 125 LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFT 204 (392)
Q Consensus 125 ~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t 204 (392)
+|+|. |.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g~-~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGT-GPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCC-CCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 99976 89999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcccccC
Q 016308 205 INEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPI 284 (392)
Q Consensus 205 ~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~~yP~ 284 (392)
+|||++++..||..|.+||+.++. ...++++||+++|||+||+++|++. |++|||++++..++||.
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPA 224 (427)
T ss_pred ecCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeC
Confidence 999999999999999999985431 4579999999999999999999964 68999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhcccccccccccccCHHHHHHhhccCCCCCHhHHHHhcCCccEEeecccccceeccC
Q 016308 285 SSSTADKLAAERAQSFYMNWFLDPIIYGKYPAEMMNIVGSTLPKFSSRDKEKLKQGLDFIGINHYTSTYVQDC 357 (392)
Q Consensus 285 s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~lp~~t~~D~~~ikg~~DFiGvNYYts~~V~~~ 357 (392)
+++|+|+.||++++++.++||+||+++|+||+.|+++++. +|.++++|+++|++++||||||||+|.+|+..
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 9999999999999999899999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.33 E-value=3.5e-12 Score=128.81 Aligned_cols=109 Identities=28% Similarity=0.473 Sum_probs=87.2
Q ss_pred cccHHHHHHHHHcCCCeeEe-ccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhh----
Q 016308 98 HRYLEDIDLMESLGVNSYRF-SISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY---- 172 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~-si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~---- 172 (392)
..+++|+++|+++|+|++|+ .++|+++||++ |++| +..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e--G~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE--GQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT--TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC--Ceee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 45899999999999999997 57999999997 9999 67799999999999999999999999999998653
Q ss_pred -----------CC-----CCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccchh
Q 016308 173 -----------GA-----WLSPESQEDFGYFADICFKSFGDR--VKYWFTINEPNMQ 211 (392)
Q Consensus 173 -----------gg-----w~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~~~ 211 (392)
|. ..++...+.+.++++.+++||++. |..|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 123566788888899999999985 8899999999753
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.29 E-value=9.9e-12 Score=118.83 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=90.3
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccc-ccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCC-
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARIL-PKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWL- 176 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~-P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~- 176 (392)
..++|++.|+++|+|++|+.|.|..++ |.+. +.++.+.++.++++|+.+.++||.+||++|+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~-~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG-YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT-TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC-ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 578999999999999999999998888 5543 56999999999999999999999999999974 6674322 2333
Q ss_pred ChhhHHHHHHHHHHHHHHhCC--cceEEEEecccchh
Q 016308 177 SPESQEDFGYFADICFKSFGD--RVKYWFTINEPNMQ 211 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd--~V~~w~t~NEp~~~ 211 (392)
.....+.|.++++.+++||++ .|..|.++|||+..
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345678899999999999955 58899999999864
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.74 E-value=3.2e-08 Score=94.94 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=71.2
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHHHHcCCee--EEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016308 119 ISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQP--FVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 119 i~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p--ivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (392)
+.|.+++|++ |.+| ++..+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~--G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR--GQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC--CccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999987 9999 566789999999999995 4456677899998642 2 56778999999999999999
Q ss_pred CcceEEEEecccch
Q 016308 197 DRVKYWFTINEPNM 210 (392)
Q Consensus 197 d~V~~w~t~NEp~~ 210 (392)
++|..|.++|||..
T Consensus 72 g~i~~wdV~NE~~~ 85 (254)
T smart00633 72 GKIYAWDVVNEALH 85 (254)
T ss_pred CcceEEEEeeeccc
Confidence 99999999999985
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2.3e-07 Score=99.34 Aligned_cols=106 Identities=20% Similarity=0.365 Sum_probs=86.6
Q ss_pred cHHHHHHHHHcCCCeeEec-cccccccccCCCCCCChhHHHHHHHH-HHHHHHcCCeeEEee-cCCCCchhHHhhh----
Q 016308 100 YLEDIDLMESLGVNSYRFS-ISWARILPKGRFGDVNSEGINHYNKL-IDALLLKGIQPFVTL-TQFDSPQEIEDKY---- 172 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~s-i~WsRi~P~~~~g~~n~~~~~~y~~~-i~~l~~~GI~pivtL-~H~~~P~~l~~~~---- 172 (392)
+++|++.||++|+|++|++ ++|++++|+. |.+|.+ +.|.. |+.+.+.||..|+.- .....|.|+.+++
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE--GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc--cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 7889999999999999995 5999999997 999955 67777 999999999999998 7789999998764
Q ss_pred -----------CCCCChhhHH-HHHHHHHH----HHHH-hCCc--ceEEEEecccch
Q 016308 173 -----------GAWLSPESQE-DFGYFADI----CFKS-FGDR--VKYWFTINEPNM 210 (392)
Q Consensus 173 -----------ggw~~~~~~~-~f~~ya~~----~~~~-fgd~--V~~w~t~NEp~~ 210 (392)
++|.+-+... .|.+|++. +.+| ||+. |--|.+-||-..
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 4554433322 46777766 7788 8774 889999998765
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=4.2e-06 Score=85.82 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhh---CCC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY---GAW 175 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~---ggw 175 (392)
++|+..||+.|+|++|+.|.|..+.+.+ ++.-.+...+...+++|+.+++.||.++++||+..-.+--.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655542 21223244455899999999999999999999866322222211 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccch
Q 016308 176 L-SPESQEDFGYFADICFKSFGDR--VKYWFTINEPNM 210 (392)
Q Consensus 176 ~-~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~~ 210 (392)
. ....++++.+-++.++.||++. |-...++|||+-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3566899999999999999984 455689999984
No 19
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.18 E-value=4.1e-05 Score=76.31 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC---CchhHHhhhCCCCC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFD---SPQEIEDKYGAWLS 177 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~---~P~~l~~~~ggw~~ 177 (392)
++=+++||+.|+|++|+-+ | +.|... |..| ++.-.++..+++++||+.+|++|--| =|.--. +-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~-g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDG-GYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTT-TTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCccc-ccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCC
Confidence 3457999999999999988 5 334321 6666 67788999999999999999998433 232111 1156887
Q ss_pred ---hhhHHHHHHHHHHHHHHhCC---cceEEEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 016308 178 ---PESQEDFGYFADICFKSFGD---RVKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLIL 251 (392)
Q Consensus 178 ---~~~~~~f~~ya~~~~~~fgd---~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlll 251 (392)
.+..+.-.+|.+.+.+.+++ .++.+.+-||.+.-.+ +|.|.. ..+.-+-.++.
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLN 157 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHH
Confidence 56677888888888776654 5888999999885322 344431 12344455666
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEecC
Q 016308 252 SHATAVDIYRTKYQKDQGGSIGIILNT 278 (392)
Q Consensus 252 AHA~Av~~~re~~~~~~~~kVGi~~~~ 278 (392)
|-.+|||. . .++.||.+.+..
T Consensus 158 ag~~AVr~---~---~p~~kV~lH~~~ 178 (332)
T PF07745_consen 158 AGIKAVRE---V---DPNIKVMLHLAN 178 (332)
T ss_dssp HHHHHHHT---H---SSTSEEEEEES-
T ss_pred HHHHHHHh---c---CCCCcEEEEECC
Confidence 55555544 4 367888666653
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.98 E-value=2.6e-05 Score=81.72 Aligned_cols=106 Identities=24% Similarity=0.444 Sum_probs=62.3
Q ss_pred cHHHHHHHH-HcCCCeeEec--c--ccccccc-cCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhh
Q 016308 100 YLEDIDLME-SLGVNSYRFS--I--SWARILP-KGRFGD--VNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDK 171 (392)
Q Consensus 100 y~eDi~l~k-~lG~~~~R~s--i--~WsRi~P-~~~~g~--~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~ 171 (392)
+++.++.++ ++|++.+||- + +..-... ++. |. +| +...|+++|.|+++||+|+|.|-. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~-~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED-GIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT-EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC-CCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 555565554 9999999985 2 2222222 221 32 78 778899999999999999999974 67776432
Q ss_pred h------CCCC-ChhhHHHHHHHHHHHHH----HhCC-cce--EEEEecccchh
Q 016308 172 Y------GAWL-SPESQEDFGYFADICFK----SFGD-RVK--YWFTINEPNMQ 211 (392)
Q Consensus 172 ~------ggw~-~~~~~~~f~~ya~~~~~----~fgd-~V~--~w~t~NEp~~~ 211 (392)
. .|+. .++..+.|.++++.+++ |||. .|. +|.+||||++.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 1 1222 24567888887766655 5553 465 56899999974
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.96 E-value=5.6e-05 Score=75.13 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEe--ccccc
Q 016308 45 FPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRF--SISWA 122 (392)
Q Consensus 45 fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~--si~Ws 122 (392)
.+.+|.+|+|.++.++++.. .| +.+-..-+|.+-. ...|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~----~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RY----RELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HH----HHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HH----HHHHHHhCCeeeeccccchh
Confidence 45789999999999887620 01 1122233444444 47899
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE--eecCCCCchhHHhhhCCCCChh---hHHHHHHHHHHHHHHhCC
Q 016308 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV--TLTQFDSPQEIEDKYGAWLSPE---SQEDFGYFADICFKSFGD 197 (392)
Q Consensus 123 Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~piv--tL~H~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~fgd 197 (392)
.++|.+ |.+| ++..+++++.++++||++-- -+.|--.|.|+... ..+...+ ......+|.+.+++||++
T Consensus 48 ~~e~~~--g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~ 121 (320)
T PF00331_consen 48 SIEPEP--GRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKD 121 (320)
T ss_dssp HHESBT--TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCC--CccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcc
Confidence 999997 9999 55688999999999999763 33466789999753 1233333 788899999999999994
Q ss_pred --cceEEEEecccch
Q 016308 198 --RVKYWFTINEPNM 210 (392)
Q Consensus 198 --~V~~w~t~NEp~~ 210 (392)
+|..|-++|||-.
T Consensus 122 ~g~i~~WDVvNE~i~ 136 (320)
T PF00331_consen 122 KGRIYAWDVVNEAID 136 (320)
T ss_dssp TTTESEEEEEES-B-
T ss_pred ccceEEEEEeeeccc
Confidence 8999999999964
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.69 E-value=0.00017 Score=71.64 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------CCCCchhHHh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT--------QFDSPQEIED 170 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--------H~~~P~~l~~ 170 (392)
.|++-++.||++|+|++-+-|.|.-.||.+ |++|.++..=.+++|+.++++|+.+|+-.- .-++|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 377789999999999999999999999997 999999988899999999999999887542 2458999987
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhCC-------cceEEEEecccc
Q 016308 171 KYGAW---LSPESQEDFGYFADICFKSFGD-------RVKYWFTINEPN 209 (392)
Q Consensus 171 ~~ggw---~~~~~~~~f~~ya~~~~~~fgd-------~V~~w~t~NEp~ 209 (392)
+.+.. .++...++..+|.+.+++...+ -|-.-.+=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 2345566666666666555533 355667888854
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.45 E-value=0.00067 Score=74.48 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee--------cCCCCchhHHh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL--------TQFDSPQEIED 170 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL--------~H~~~P~~l~~ 170 (392)
.|++=++.||++|+|++-.=+-|.-.||++ |++|.+|..=..++|+.+.+.|+-+|+-. -.-++|.||.+
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC--CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 467779999999999999999999999997 99999999889999999999999988854 24578999975
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHhC---------CcceEEEEecccc
Q 016308 171 KYGAW----LSPESQEDFGYFADICFKSFG---------DRVKYWFTINEPN 209 (392)
Q Consensus 171 ~~ggw----~~~~~~~~f~~ya~~~~~~fg---------d~V~~w~t~NEp~ 209 (392)
. .|- .++...++-.+|.+.+++..+ +-|-...+=||-.
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 4 342 245566666777777777663 2355566778853
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.90 E-value=0.0068 Score=59.47 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCeeEecc--ccccc-----ccc-----CCC-----CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 016308 101 LEDIDLMESLGVNSYRFSI--SWARI-----LPK-----GRF-----GDVNSEGINHYNKLIDALLLKGIQPFVTLTQFD 163 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si--~WsRi-----~P~-----~~~-----g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~ 163 (392)
+.-++..|+-|+|.+|+.+ .|... .|. .+. ..+|++-+++.+++|+.|.+.||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3347888999999999998 44433 111 110 1389999999999999999999999877664 2
Q ss_pred CchhHHhhhCCCCC---hhhHHHHHHHHHHHHHHhCCc-ceEEEEeccc
Q 016308 164 SPQEIEDKYGAWLS---PESQEDFGYFADICFKSFGDR-VKYWFTINEP 208 (392)
Q Consensus 164 ~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~fgd~-V~~w~t~NEp 208 (392)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. -..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 121 11 44533 234778889999999999998 5889999995
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.89 E-value=0.0012 Score=67.00 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=74.3
Q ss_pred ccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CCC
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FDS 164 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~~ 164 (392)
+.-.+..++.+|++|++.+-+.+=|.-+|.++. +++|+ ..|+++++.+++.|++..+.|. | .-+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p-~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP-QQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST-TB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC-CccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 346889999999999999999999999999965 99995 4599999999999999877662 3 458
Q ss_pred chhHHhh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCcc
Q 016308 165 PQEIEDK-----------YGA--------WLSPESQEDFGYFADICFKSFGDRV 199 (392)
Q Consensus 165 P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~fgd~V 199 (392)
|.|+.++ .|. |....+++.|.+|-+-+.++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998753 122 3333448999999999988887753
No 26
>PLN02803 beta-amylase
Probab=96.82 E-value=0.0047 Score=64.36 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=80.1
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FD 163 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~ 163 (392)
+-.-.+..++.+|++|++.+-+.+=|--+|.++. +++|+.| |+++++.+++.|++..+.|. | .-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGP-MKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC-CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 3344788999999999999999999999999875 9999555 99999999999999776663 3 34
Q ss_pred CchhHHhhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 164 SPQEIEDKY-----------GAW----------------LSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 164 ~P~~l~~~~-----------ggw----------------~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
+|.|..+.. .|. ..+--++.|.+|.+-+-++|.+... -|+.|..
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 999977520 121 1233457888888888777766542 3444433
No 27
>PLN00197 beta-amylase; Provisional
Probab=96.77 E-value=0.0056 Score=64.08 Aligned_cols=100 Identities=14% Similarity=0.248 Sum_probs=77.2
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FD 163 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~ 163 (392)
+-.-.+..++.+|++|++.+-+.+=|--+|.++. +++|++| |+++++.+++.|++..+.|. | .-
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p-~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESP-GVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 3345788999999999999999999999999876 9999555 99999999999999777664 3 35
Q ss_pred CchhHHhhh-----------CCCCC----------------hhhHHHHHHHHHHHHHHhCCcc
Q 016308 164 SPQEIEDKY-----------GAWLS----------------PESQEDFGYFADICFKSFGDRV 199 (392)
Q Consensus 164 ~P~~l~~~~-----------ggw~~----------------~~~~~~f~~ya~~~~~~fgd~V 199 (392)
+|.|..+.. .|..| |--++.|.+|.+-+-++|.+..
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 263 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL 263 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999977520 12111 2236888888888877776653
No 28
>PLN02161 beta-amylase
Probab=96.74 E-value=0.0067 Score=62.97 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=79.6
Q ss_pred CccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-CC----------
Q 016308 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-QF---------- 162 (392)
Q Consensus 94 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H~---------- 162 (392)
..+..-.+..++.+|.+|++.+-+.+=|--+|.++. +++|++ .|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP-LEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC-CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 466677888999999999999999999999999876 999955 599999999999999777664 32
Q ss_pred -CCchhHHhhh-----------CCCC----------------ChhhHHHHHHHHHHHHHHhCCcc
Q 016308 163 -DSPQEIEDKY-----------GAWL----------------SPESQEDFGYFADICFKSFGDRV 199 (392)
Q Consensus 163 -~~P~~l~~~~-----------ggw~----------------~~~~~~~f~~ya~~~~~~fgd~V 199 (392)
-+|.|+.+.. .|.. .+--++.|.+|.+-+.++|.+..
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4899977520 1211 22345788888888888877754
No 29
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.66 E-value=0.0094 Score=58.29 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=62.5
Q ss_pred ccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhC---
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG--- 173 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~g--- 173 (392)
...++.|+++||++|+|++|++- .|.. .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~-------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS-------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S-------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc-------------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 46789999999999999999842 2221 256778889999988776432211111 001
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEeccc
Q 016308 174 -AWLSPESQEDFGYFADICFKSFGDR--VKYWFTINEP 208 (392)
Q Consensus 174 -gw~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp 208 (392)
--.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0125677888888899999999886 8999999998
No 30
>PLN02801 beta-amylase
Probab=96.55 E-value=0.013 Score=61.00 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=77.6
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------FD 163 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~ 163 (392)
+-.-.+..++.+|++|++.+-+.+=|--+|.++. +++|++| |+++++.++++|++..+.|. | .-
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP-KQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 3444788999999999999999999999999875 9999555 99999999999999766663 3 35
Q ss_pred CchhHHhhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCcc
Q 016308 164 SPQEIEDKY-----------GAW----------------LSPESQEDFGYFADICFKSFGDRV 199 (392)
Q Consensus 164 ~P~~l~~~~-----------ggw----------------~~~~~~~~f~~ya~~~~~~fgd~V 199 (392)
+|.|+.+.. .|- ..|--++.|.+|-+-+-++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 899987520 121 123346889999888888887753
No 31
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.49 E-value=0.0056 Score=61.90 Aligned_cols=100 Identities=21% Similarity=0.361 Sum_probs=53.9
Q ss_pred HcCCCeeEecc---c------------ccccc--ccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhh
Q 016308 109 SLGVNSYRFSI---S------------WARIL--PKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDK 171 (392)
Q Consensus 109 ~lG~~~~R~si---~------------WsRi~--P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~ 171 (392)
.+|++.+|+.| + |.|.+ +..+ |.+|+.+=+-=+.++++++++|+..++. +-+..|.|+...
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~d-g~yDW~~D~gQrwfL~~Ak~rGV~~f~a-FSNSPP~~MT~N 135 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPAD-GSYDWDADAGQRWFLKAAKERGVNIFEA-FSNSPPWWMTKN 135 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TT-S-B-TTSSHHHHHHHHHHHHTT---EEE-E-SSS-GGGSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCC-CCcCCCCCHHHHHHHHHHHHcCCCeEEE-eecCCCHHHhcC
Confidence 48999999877 3 33432 1223 7777654444556899999999998875 446667666432
Q ss_pred h---CC-----CCChhhHHHHHHHHHHHHHHhCC---cceEEEEecccch
Q 016308 172 Y---GA-----WLSPESQEDFGYFADICFKSFGD---RVKYWFTINEPNM 210 (392)
Q Consensus 172 ~---gg-----w~~~~~~~~f~~ya~~~~~~fgd---~V~~w~t~NEp~~ 210 (392)
. |+ =+.++..++|++|-..|+++|.. .+.+-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 0 11 14467799999999999998833 5888899999983
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.0094 Score=58.71 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=70.1
Q ss_pred eccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE-ee-cCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHH
Q 016308 117 FSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFV-TL-TQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKS 194 (392)
Q Consensus 117 ~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~piv-tL-~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~ 194 (392)
--+-|.-|+|+. |.+|.++ -|.+.+-++++||..-- || .|--.|.|+.. .-+..+...+...++...|++|
T Consensus 65 nemKwe~i~p~~--G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 65 NEMKWEAIEPER--GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred cccccccccCCC--CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHh
Confidence 345799999975 9999554 67899999999997432 22 34567889863 2367788999999999999999
Q ss_pred hCCcceEEEEecccch
Q 016308 195 FGDRVKYWFTINEPNM 210 (392)
Q Consensus 195 fgd~V~~w~t~NEp~~ 210 (392)
|++.|..|-+.|||.-
T Consensus 138 Ykg~~~sWDVVNE~vd 153 (345)
T COG3693 138 YKGSVASWDVVNEAVD 153 (345)
T ss_pred ccCceeEEEecccccC
Confidence 9999999999999975
No 33
>PLN02905 beta-amylase
Probab=96.28 E-value=0.023 Score=60.37 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=78.0
Q ss_pred CccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------
Q 016308 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q----------- 161 (392)
Q Consensus 94 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H----------- 161 (392)
..+..-.+..++.+|++|++.+-+.+=|--+|.++. +++|++| |+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP-~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP-QEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC-CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 356667888999999999999999999999999876 9999554 99999999999999777663 3
Q ss_pred CCCchhHHhhh-----------CCCC----------------ChhhHHHHHHHHHHHHHHhCCc
Q 016308 162 FDSPQEIEDKY-----------GAWL----------------SPESQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 162 ~~~P~~l~~~~-----------ggw~----------------~~~~~~~f~~ya~~~~~~fgd~ 198 (392)
.-+|.|..+.- .|.. .|--++.|.+|.+-+-++|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35999977520 1211 1334688888888877777654
No 34
>PLN02705 beta-amylase
Probab=96.21 E-value=0.018 Score=60.85 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=76.7
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------C
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-Q-----------F 162 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~ 162 (392)
.+-.-.+..++.+|++|++.+-+.+=|-.+|.++. +++|++| |+++++.+++.|++..+.|. | .
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P-~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP-QKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC-CcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 34455888999999999999999999999999875 9999554 99999999999999766663 3 2
Q ss_pred CCchhHHhhh-----------CCCCC----------------hhhHHHHHHHHHHHHHHhCCc
Q 016308 163 DSPQEIEDKY-----------GAWLS----------------PESQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 163 ~~P~~l~~~~-----------ggw~~----------------~~~~~~f~~ya~~~~~~fgd~ 198 (392)
-+|.|..+.- .|..| |--++.|.+|.+-+-++|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5999977520 12111 234588888888877777664
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.95 E-value=0.026 Score=60.84 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHh-------
Q 016308 98 HRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIED------- 170 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~------- 170 (392)
..++.|+++||++|+|++|++ ..|.. .++++.|-+.||-++.-+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 347889999999999999995 23322 15678888999988766533222222210
Q ss_pred hhCCCC----ChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccc
Q 016308 171 KYGAWL----SPESQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (392)
Q Consensus 171 ~~ggw~----~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~ 209 (392)
....|. +++..+.+.+-++.+++|++++ |-.|.+.||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3466788889899999999996 78999999973
No 36
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.51 Score=46.35 Aligned_cols=135 Identities=19% Similarity=0.325 Sum_probs=80.2
Q ss_pred CCCCCCCEEeeeecc-ccccCcccCCCCccceeeecccCCCCcCCCCCCCccCccccccHHH-HHHHHHcCCCeeEeccc
Q 016308 43 SPFPSNFLFGTSTSS-YQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLED-IDLMESLGVNSYRFSIS 120 (392)
Q Consensus 43 ~~fp~~FlwG~AtSa-~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eD-i~l~k~lG~~~~R~si~ 120 (392)
...|+||+.|+-.|. .|+|-. ++ .|....+ -++| ++.+|+.|+|.+|+.|
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gv-------kf~d~ng-----------------~~qD~~~iLK~~GvNyvRlRv- 84 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GV-------KFFDTNG-----------------VRQDALQILKNHGVNYVRLRV- 84 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cc-------eEEccCC-----------------hHHHHHHHHHHcCcCeEEEEE-
Confidence 468999999998765 466631 11 1111111 1344 7999999999999976
Q ss_pred cccccc-cCC--C-CCCChhHHHHHHHHHHHHHHcCCeeEEeec---CCCCchhHHhhhCCCCCh---hhHHHHHHHHHH
Q 016308 121 WARILP-KGR--F-GDVNSEGINHYNKLIDALLLKGIQPFVTLT---QFDSPQEIEDKYGAWLSP---ESQEDFGYFADI 190 (392)
Q Consensus 121 WsRi~P-~~~--~-g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H~~~P~~l~~~~ggw~~~---~~~~~f~~ya~~ 190 (392)
|-.=.. ++. . |.=| ++---++-++++++||+++++.| ||.=|..- ++-..|.+- ....+--+|.+.
T Consensus 85 wndP~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~ 160 (403)
T COG3867 85 WNDPYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKY 160 (403)
T ss_pred ecCCccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHH
Confidence 321111 111 0 2233 45556788899999999999987 35445432 222456542 223344455555
Q ss_pred HHHHh---CCcceEEEEecccc
Q 016308 191 CFKSF---GDRVKYWFTINEPN 209 (392)
Q Consensus 191 ~~~~f---gd~V~~w~t~NEp~ 209 (392)
+...+ |-....-.+=||-|
T Consensus 161 ~l~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 161 VLTTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHHHHcCCCccceEeccccC
Confidence 55555 44566667999976
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.55 E-value=0.091 Score=47.41 Aligned_cols=103 Identities=19% Similarity=0.359 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHcCCCeeEecccccccc-----ccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARIL-----PKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY 172 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~-----P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ 172 (392)
+|+++++.|+++|++++=+- |+... |..- .+.+.....+..+.+++++.++||+++|.|+. -|.|..+..
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~~~ 96 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQGD 96 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--CchhhhccC
Confidence 58999999999999987433 43332 2210 01223334578999999999999999999974 355554210
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccc
Q 016308 173 GAWLSPESQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (392)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~ 209 (392)
..| -++.=.+-++.+.++||.+ +..|-+-.|+.
T Consensus 97 ~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 97 LDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred HHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 112 2333345678888899885 67777777765
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=0.14 Score=54.80 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee--------cCCCCchhHHh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL--------TQFDSPQEIED 170 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL--------~H~~~P~~l~~ 170 (392)
.|++=|+.+|++|+|++..=+-|.-.||.+ |++|.+|..=..++|..+.++|+-+++-+ .+-++|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~--g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP--GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC--CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 366779999999999999999999999997 99999987666688999999999877655 35678988876
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHh-------CCcceEEEEecccc
Q 016308 171 KYGAW----LSPESQEDFGYFADICFKSF-------GDRVKYWFTINEPN 209 (392)
Q Consensus 171 ~~ggw----~~~~~~~~f~~ya~~~~~~f-------gd~V~~w~t~NEp~ 209 (392)
. .|- .|+.+..+..+|.++++... |+=|-.-.+=||-.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5 342 36777888888888887733 23355556888876
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.33 E-value=0.16 Score=58.28 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=64.2
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec---CCCCchhHHhhh
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT---QFDSPQEIEDKY 172 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H~~~P~~l~~~~ 172 (392)
....++.||++||++|+|++|+| ..|.. .++.+.|=+.||-++--.. |.-.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPM---NR- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCccc---cC-
Confidence 34678999999999999999995 23432 1456788889998876542 211110 00
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccc
Q 016308 173 GAWLSPESQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (392)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~ 209 (392)
...+++..+.+.+=++.+++|.+.+ |-.|.+.||+.
T Consensus 427 -~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 -LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566777888888999999997 88999999975
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.53 E-value=0.27 Score=56.34 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee----cCCCCchhHHhhh
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL----TQFDSPQEIEDKY 172 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL----~H~~~P~~l~~~~ 172 (392)
...++.|+++||++|+|++|++ ..|... .+.+.|-+.||-++--. +.|..... +
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~~-------------~fydlcDe~GllV~dE~~~e~~g~~~~~~----~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPNDP-------------RFYELCDIYGLFVMAETDVESHGFANVGD----I 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCCH-------------HHHHHHHHCCCEEEECCcccccCcccccc----c
Confidence 5678999999999999999996 244421 56778889999877643 11211100 0
Q ss_pred CCC--CChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccc
Q 016308 173 GAW--LSPESQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (392)
Q Consensus 173 ggw--~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~ 209 (392)
.+ ..+...+.|.+=++.+++|.+.+ |-.|.+-||..
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23445567777788999999996 78999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.80 E-value=0.42 Score=53.24 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=66.7
Q ss_pred CccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhC
Q 016308 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG 173 (392)
Q Consensus 94 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~g 173 (392)
+-.+..++.|+++||++|+|++|.| -.|..+ ++.+.|-+.||-++=...+.. ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~~-------------~~ydLcDelGllV~~Ea~~~~--------~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNSE-------------EFYDLCDELGLLVIDEAMIET--------HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCCH-------------HHHHHHHHhCcEEEEecchhh--------cC
Confidence 3445669999999999999999998 555531 566777888998886553211 13
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccc
Q 016308 174 AWLSPESQEDFGYFADICFKSFGDR--VKYWFTINEPN 209 (392)
Q Consensus 174 gw~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~ 209 (392)
+...++..+...+=+++.++|-+.. |-.|..-||.+
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 3345566667777788889999885 89999999965
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.70 E-value=0.31 Score=49.69 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=73.2
Q ss_pred HHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCC--ChhhHHHH
Q 016308 107 MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWL--SPESQEDF 184 (392)
Q Consensus 107 ~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~--~~~~~~~f 184 (392)
-+|+|++-+|.---|.-++.+ =-++ +.+++++++.+...|+.-+.+-.||..+.-.+..+.+-. .....+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~---~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK---LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeecc---ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 358899999988888833333 2356 568999999999999555556667777765444333321 23578999
Q ss_pred HHHHHHHHHHhCCc-ceEE--EEecccchhhh
Q 016308 185 GYFADICFKSFGDR-VKYW--FTINEPNMQVT 213 (392)
Q Consensus 185 ~~ya~~~~~~fgd~-V~~w--~t~NEp~~~~~ 213 (392)
+.+++.|+.+||-+ |.-| ..+||||..+-
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 99999999999974 5555 69999998753
No 43
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=90.58 E-value=1.3 Score=43.95 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~ 178 (392)
-.+.|+.+||+||+|++|+= -|-|+. | .+.-.+.|.++||-++++|.- |.--.++..-|.+
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----n------Hd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~~s- 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----N------HDECMSAFADAGIYVILDLNT---PNGSINRSDPAPS- 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-B---TTBS--TTS-----
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----C------HHHHHHHHHhCCCEEEEecCC---CCccccCCCCcCC-
Confidence 57899999999999999973 233432 2 667888899999999999963 4211122121111
Q ss_pred hhHHHHHHHHHHH--HHHhCCcceEEEEeccc
Q 016308 179 ESQEDFGYFADIC--FKSFGDRVKYWFTINEP 208 (392)
Q Consensus 179 ~~~~~f~~ya~~~--~~~fgd~V~~w~t~NEp 208 (392)
=..+.+.+|-..+ |.+|- .+-.+..=||-
T Consensus 115 w~~~l~~~~~~vid~fa~Y~-N~LgFf~GNEV 145 (314)
T PF03198_consen 115 WNTDLLDRYFAVIDAFAKYD-NTLGFFAGNEV 145 (314)
T ss_dssp --HHHHHHHHHHHHHHTT-T-TEEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhccCC-ceEEEEeccee
Confidence 1245566665553 44452 36667777774
No 44
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=90.07 E-value=4.1 Score=38.92 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCC--------------CCchh--HH--------------hhhCC----CCCh-----
Q 016308 138 INHYNKLIDALLLKGIQPFVTLTQF--------------DSPQE--IE--------------DKYGA----WLSP----- 178 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~pivtL~H~--------------~~P~~--l~--------------~~~gg----w~~~----- 178 (392)
.+.++.+|+.-+++|.++|+||.=- ..|.| -. .+.++ ..+|
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 3578999999999999999998521 11211 11 00011 1133
Q ss_pred -hhHHHHHHHHHHHHHHhCCc-----ceEEEEecccchhhhcccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 016308 179 -ESQEDFGYFADICFKSFGDR-----VKYWFTINEPNMQVTLSYRLGCHPPAHCSQPFGNCSQGNSEEEPFIAAHNLILS 252 (392)
Q Consensus 179 -~~~~~f~~ya~~~~~~fgd~-----V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllA 252 (392)
..++.| +..+..+||.. |++|.+=|||.+...-- -..+|- .-.+.-+....++
T Consensus 103 ~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH--~dVHP~----------------~~t~~El~~r~i~ 161 (239)
T PF12891_consen 103 PVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTH--RDVHPE----------------PVTYDELRDRSIE 161 (239)
T ss_dssp EEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHT--TTT--S-------------------HHHHHHHHHH
T ss_pred HhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccc--cccCCC----------------CCCHHHHHHHHHH
Confidence 345666 55556666654 99999999999754310 112221 1234455667777
Q ss_pred HHHHHHHHHHhhcCCCCCcE-EEEecCcccc
Q 016308 253 HATAVDIYRTKYQKDQGGSI-GIILNTLWFE 282 (392)
Q Consensus 253 HA~Av~~~re~~~~~~~~kV-Gi~~~~~~~y 282 (392)
.|+|+|.. .|.++| |.+.-.-+.|
T Consensus 162 ~AkaiK~~------DP~a~v~GP~~wgw~~y 186 (239)
T PF12891_consen 162 YAKAIKAA------DPDAKVFGPVEWGWCGY 186 (239)
T ss_dssp HHHHHHHH-------TTSEEEEEEE-SHHHH
T ss_pred HHHHHHhh------CCCCeEeechhhcccee
Confidence 77776654 367775 7775443333
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.72 E-value=0.15 Score=52.84 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=79.8
Q ss_pred cHHHHHHHHHcCCCeeEecccc-ccccccCCCCCCChhH-HHHHHHHHHHHHHcCCeeEEeec----CCCCchhHHhhhC
Q 016308 100 YLEDIDLMESLGVNSYRFSISW-ARILPKGRFGDVNSEG-INHYNKLIDALLLKGIQPFVTLT----QFDSPQEIEDKYG 173 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W-sRi~P~~~~g~~n~~~-~~~y~~~i~~l~~~GI~pivtL~----H~~~P~~l~~~~g 173 (392)
.+.|++.++.+|++..|++|-= ..+--+ . |..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~-~-G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK-E-GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh-h-ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 4578899999999999999532 332222 2 7888776 88999999999999999999986 3322222110001
Q ss_pred C------CCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecccch
Q 016308 174 A------WLSPESQEDFGYFADICFKSFGDR--VKYWFTINEPNM 210 (392)
Q Consensus 174 g------w~~~~~~~~f~~ya~~~~~~fgd~--V~~w~t~NEp~~ 210 (392)
+ ...+++...|.+|++.+++.|+.. +.-|+.-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 234667888999999999999885 678999999766
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=84.95 E-value=2.7 Score=37.73 Aligned_cols=65 Identities=18% Similarity=0.397 Sum_probs=45.4
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccc--cCCCC-------CCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILP--KGRFG-------DVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P--~~~~g-------~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
..+....+-++.++++|++++-++--+..... ... | .+|++ ..+-++++|++|+++||++++++.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~-gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYH-GYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCC-CcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555677788999999999998865544431 100 1 12221 346688999999999999999884
No 47
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=84.12 E-value=5.8 Score=38.72 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=71.3
Q ss_pred cceeeecccCCCCcCCCCCCCccCccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHH
Q 016308 71 LSNWDVFTHTPGNIDDGSSGDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLL 150 (392)
Q Consensus 71 ~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~ 150 (392)
.+.|+-|....+. + .+..+.--+.++++-|+..+++|+..+=+.--|+.-.............-....++++..++
T Consensus 9 k~~W~Ww~~~~~~---~-~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK---G-VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS---S-BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC---C-CCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 5678766542221 1 11234456788999999999999999999999987332211010111112346799999999
Q ss_pred cCCeeEEeecCCC------CchhHHh---hh---C------CC---CChhhHHHHHHHHHHHHHH
Q 016308 151 KGIQPFVTLTQFD------SPQEIED---KY---G------AW---LSPESQEDFGYFADICFKS 194 (392)
Q Consensus 151 ~GI~pivtL~H~~------~P~~l~~---~~---g------gw---~~~~~~~~f~~ya~~~~~~ 194 (392)
+|+.++|-.+|-+ +=.-+++ ++ | +| .+...++.|.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999988755 1111111 11 1 12 3456788888888887763
No 48
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=83.80 E-value=7.3 Score=38.55 Aligned_cols=87 Identities=26% Similarity=0.442 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHcCCCeeEecc---ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhC
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSI---SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYG 173 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si---~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~g 173 (392)
..||++-.+++++.|||.+=+.= .-..+.+ +.++.+.++-+.++.+||++.+++. |.-|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~---------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP---------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST---------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH---------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 46899999999999999886541 2222222 2277788999999999999999986 8888654 5
Q ss_pred CC-----CChhhHHHHHHHHHHHHHHhCC
Q 016308 174 AW-----LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 174 gw-----~~~~~~~~f~~ya~~~~~~fgd 197 (392)
|. +++++...|.+=++.+.++.-|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 53 5688999999999999988765
No 49
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.51 E-value=3.1 Score=39.51 Aligned_cols=59 Identities=25% Similarity=0.551 Sum_probs=41.6
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCC-------CCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFG-------DVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g-------~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
..+-++.+|+||++++-++=-+. .|....| .+|++ ..+=++++|++|.++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 34568899999999999885554 2211102 12222 466789999999999999999984
No 50
>PLN02361 alpha-amylase
Probab=76.64 E-value=5.7 Score=40.94 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=47.0
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccccCCC----CCCChh--HHHHHHHHHHHHHHcCCeeEEee
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRF----GDVNSE--GINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~----g~~n~~--~~~~y~~~i~~l~~~GI~pivtL 159 (392)
.+|....+-++.++++|++++=++-...-..+.|-. -.+|.. ..+-++++|++|+++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488999999999999999999887654433333210 012221 23458899999999999999976
No 51
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=75.77 E-value=8.5 Score=37.58 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~ 178 (392)
+-+.|++.+++.|++.+++.++=|...-..+-+.--++.++...++|+.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 34678999999999999999855544333211333466789999999999999999999998877653 1
Q ss_pred hhHHHHHHHHHHHHH
Q 016308 179 ESQEDFGYFADICFK 193 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~ 193 (392)
...+.+.++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 DSPDYVFQLVDFLSD 158 (280)
T ss_pred CCHHHHHHHHHHHHH
Confidence 125667777777654
No 52
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.59 E-value=7 Score=40.99 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=72.3
Q ss_pred cccccHHHHHHHHHcCCCeeEec----cccccccccC-----------------------C----CCCCChh----HHHH
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFS----ISWARILPKG-----------------------R----FGDVNSE----GINH 140 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~s----i~WsRi~P~~-----------------------~----~g~~n~~----~~~~ 140 (392)
.|.+|+..|+.|+-.|||..=.. +-|.+|+-.- + .|...+. -+-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 36889999999999999976433 2455555421 0 1222211 1223
Q ss_pred HHHHHHHHHHcCCeeEEeecCCCCchhHHhhh--------CCCCC---------------hhhHHHHHHHHHHHHHHhCC
Q 016308 141 YNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY--------GAWLS---------------PESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 141 y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~--------ggw~~---------------~~~~~~f~~ya~~~~~~fgd 197 (392)
=+++|+++++-||+|++--+---.|..|..-+ +.|.+ +-+++-=..|.+...++||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 35899999999999999887666788776432 23422 23344445667778899997
Q ss_pred cceEE--EEeccc
Q 016308 198 RVKYW--FTINEP 208 (392)
Q Consensus 198 ~V~~w--~t~NEp 208 (392)
--..+ -||||.
T Consensus 236 ~tniy~~DpFNE~ 248 (666)
T KOG2233|consen 236 VTNIYSADPFNEI 248 (666)
T ss_pred cccccccCccccc
Confidence 32223 399995
No 53
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.43 E-value=9 Score=36.69 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=56.5
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPE 179 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~ 179 (392)
-.+|++...+.|++.+|+.++.+.+.-..+.+.-.+++++...++++.+++.|+++.+++.. .+ +.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~---~~ 136 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------AS---RA 136 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CC---CC
Confidence 37899999999999999999887664332113334567888999999999999988765521 12 22
Q ss_pred hHHHHHHHHHHHHH
Q 016308 180 SQEDFGYFADICFK 193 (392)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (392)
..+.+.+.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~ 150 (259)
T cd07939 137 DPDFLIEFAEVAQE 150 (259)
T ss_pred CHHHHHHHHHHHHH
Confidence 35566666666544
No 54
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.93 E-value=10 Score=35.91 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhh
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (392)
+++++.+++.|++.+|++++-+.+.-..+.+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998764222111011122357778899999999999999998543322 133
Q ss_pred HHHHHHHHHHHHHHhC
Q 016308 181 QEDFGYFADICFKSFG 196 (392)
Q Consensus 181 ~~~f~~ya~~~~~~fg 196 (392)
.+.+.++++.+. .+|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 555666666654 344
No 55
>PLN00196 alpha-amylase; Provisional
Probab=74.13 E-value=5.5 Score=41.38 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=45.1
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCC-CC---CCCh-h--HHHHHHHHHHHHHHcCCeeEEee
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGR-FG---DVNS-E--GINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-~g---~~n~-~--~~~~y~~~i~~l~~~GI~pivtL 159 (392)
+|....+.+..+++||++++=++=......+.|- .. .+|. . .-+=++++|++++++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566788899999999999998865544333331 00 1221 1 23458899999999999999976
No 56
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=74.05 E-value=11 Score=37.94 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=60.8
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~ 176 (392)
-+|.++.|+++|++.+-+++ .-+-++- .-|+.. ..+-+.+.|+.+++.|+..+ +++. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 36789999999999544444 3333321 003321 24567789999999999744 6664 56662
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCC
Q 016308 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGC 220 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~ 220 (392)
++.+.|.+-.+.+.+-=-+.|..+...-+|+.....-+..|.
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~ 204 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGK 204 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCC
Confidence 234556666666544322566666555588754433333343
No 57
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.81 E-value=12 Score=36.66 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC-CCCchhHHhhhCCCCC
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLS 177 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H-~~~P~~l~~~~ggw~~ 177 (392)
+-.+|++...+.|++.+|+.++=+...-..+-+.=-++.++...++|+.++++|+++..++.. |+.|. .|.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~-- 151 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGE-- 151 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCC--
Confidence 358999999999999999998655443222113334567889999999999999999877763 45441 232
Q ss_pred hhhHHHHHHHHHHHHHH
Q 016308 178 PESQEDFGYFADICFKS 194 (392)
Q Consensus 178 ~~~~~~f~~ya~~~~~~ 194 (392)
-..+.+.++++.+.+.
T Consensus 152 -~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 152 -VPPEAVADVAERLFAL 167 (287)
T ss_pred -CCHHHHHHHHHHHHHc
Confidence 2366777777776543
No 58
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=73.32 E-value=12 Score=37.79 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC-CCCchhHHhhhCCCCCh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H-~~~P~~l~~~~ggw~~~ 178 (392)
-++|++.+.+.|++.+++.++=|...-..+.+.=-++.++.+.++|+.++++|+++.+++.. |..|. .+ +
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~---r 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EG---P 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cC---C
Confidence 68999999999999999998666555443213445678999999999999999999877753 44442 22 1
Q ss_pred hhHHHHHHHHHHHHH
Q 016308 179 ESQEDFGYFADICFK 193 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~ 193 (392)
-.++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 225566666666544
No 59
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=71.19 E-value=12 Score=37.87 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 161 (392)
-.++|++.+.+.|++.+|+.++-|.+.-+..-+.-.++.++...+.|+.+++.|+++.+++-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 358999999999999999988776664432113223456888999999999999999888753
No 60
>PRK13792 lysozyme inhibitor; Provisional
Probab=68.58 E-value=4.4 Score=35.01 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccccccccccccC---CCCCCCCCCCCEEeeeeccccccCc
Q 016308 16 ALFLLMMLLSPLFISCDQTTLKQ---SLDPSPFPSNFLFGTSTSSYQVEGA 63 (392)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fp~~FlwG~AtSa~Q~EG~ 63 (392)
+||||+..+..++..|+++.... +-+...+|.+=.--.-+-.||+|.+
T Consensus 4 ~l~~ll~~~~~lLsaCs~~~~~~~~~~~~~l~ip~~~~~~~~tv~YqC~~~ 54 (127)
T PRK13792 4 ALWLLLAAVPVVLVACGGSDDDKQTAQVDYLALPGDAKLDTRSVDYKCENG 54 (127)
T ss_pred HHHHHHHHHHhheecccCCCCCcccccceeeecCCCcccccceEEEECCCC
Confidence 58888888888899999887753 2344578888777788889999863
No 61
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=68.02 E-value=11 Score=41.58 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=40.8
Q ss_pred HHHHHHcCCCeeEe----ccccccccccC-C--------------CCCC--Ch---hHHHHHHHHHHHHHHcCCeeEEee
Q 016308 104 IDLMESLGVNSYRF----SISWARILPKG-R--------------FGDV--NS---EGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 104 i~l~k~lG~~~~R~----si~WsRi~P~~-~--------------~g~~--n~---~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
|+.+|+||++++.+ ++.+.+...+. . +|.+ +. ..+.-+++||++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 44555444321 0 1121 22 257789999999999999999987
Q ss_pred c
Q 016308 160 T 160 (392)
Q Consensus 160 ~ 160 (392)
-
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 3
No 62
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=67.13 E-value=21 Score=37.56 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred cccccHHH-----HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchh---
Q 016308 96 HYHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQE--- 167 (392)
Q Consensus 96 ~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~--- 167 (392)
.|..|.+| ++...+.|++.+|+.++-+.+ +-..+.|+.++++|++...++.+-..|.+
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e 153 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLE 153 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHH
Confidence 46678888 899999999999999865432 33567778888888887777754333521
Q ss_pred -HHh---h-------------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 168 -IED---K-------------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 168 -l~~---~-------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
+.+ + -.|... +....+.++.+-++++ ..-...+-|-..+
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l~---P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLLT---PKRAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCcC---HHHHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 110 0 034444 3455566666667775 2234567776654
No 63
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=66.77 E-value=3.2 Score=33.03 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=14.0
Q ss_pred HHHHhCC--cceEEEEecc-cc
Q 016308 191 CFKSFGD--RVKYWFTINE-PN 209 (392)
Q Consensus 191 ~~~~fgd--~V~~w~t~NE-p~ 209 (392)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677877 6999999999 66
No 64
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=66.10 E-value=22 Score=37.38 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred cccccHHH-----HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch
Q 016308 96 HYHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ 166 (392)
Q Consensus 96 ~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~ 166 (392)
.|..|.+| +++.++.|++.+|+.-... | ++-....|+.+++.|.+..+++.+=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln-----------d---~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALN-----------D---PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCC-----------C---HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 47778889 9999999999999875332 1 34566778888888888777777655563
No 65
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=65.85 E-value=11 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=46.5
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
-.+|++.+.+.|++.+|+.++=|...-..+.+.=-++.++...+++..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3679999999999999998865443332211322356789999999999999999998884
No 66
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=65.27 E-value=25 Score=34.13 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=60.5
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-CCCCchhHHhhhCCCCCh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-QFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H~~~P~~l~~~~ggw~~~ 178 (392)
-++|++...+.|++.+++.++=|...-..+-+.--++.++...+.++.++++|+++.+++. .|+.|. .+ +
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~---~ 145 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EG---E 145 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CC---C
Confidence 3789999999999999999865544322211333356788999999999999999988876 355551 22 2
Q ss_pred hhHHHHHHHHHHHHH
Q 016308 179 ESQEDFGYFADICFK 193 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~ 193 (392)
-..+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (274)
T cd07938 146 VPPERVAEVAERLLD 160 (274)
T ss_pred CCHHHHHHHHHHHHH
Confidence 246677778877654
No 67
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=64.59 E-value=24 Score=38.24 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=57.4
Q ss_pred cccccHHH-----HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc----h
Q 016308 96 HYHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP----Q 166 (392)
Q Consensus 96 ~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P----~ 166 (392)
-|.+|.+| ++..++.|++.+|+....+.+ +.....|+.++++|....+++.+-+.| .
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~ 155 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQ 155 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHH
Confidence 35666666 999999999999999755332 234566677777777655444432233 1
Q ss_pred hHHhh----------------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 167 EIEDK----------------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 167 ~l~~~----------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
.+.+. -.|-.. +....+.++.+-+++ +..-...+-|-..+-
T Consensus 156 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~---P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 156 TWVDLAKQLEDMGVDSLCIKDMAGLLK---PYAAYELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 11110 033344 445556666666677 333456688877653
No 68
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=64.49 E-value=51 Score=32.64 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCC-eeEeccc-c-ccccc-c-CCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCC
Q 016308 101 LEDIDLMESLGVN-SYRFSIS-W-ARILP-K-GRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW 175 (392)
Q Consensus 101 ~eDi~l~k~lG~~-~~R~si~-W-sRi~P-~-~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw 175 (392)
+|.+++|+++|++ .+=++++ - .++.- . .+ | .+ .+-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inK-g-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINK-G-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCC-C-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6889999999988 4666552 1 22221 1 11 2 23 45678999999999999777765 45552 1
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCCCC
Q 016308 176 LSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHPP 223 (392)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~P 223 (392)
...+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223667778778877664 45888887777677764444566677654
No 69
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=64.27 E-value=33 Score=33.99 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=63.6
Q ss_pred cccHHHHHHHHHcCCCeeEecccc-------ccccccCC--CCCC-ChhHHHHHHHHHHHHHHcCCeeEEee----cC--
Q 016308 98 HRYLEDIDLMESLGVNSYRFSISW-------ARILPKGR--FGDV-NSEGINHYNKLIDALLLKGIQPFVTL----TQ-- 161 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~W-------sRi~P~~~--~g~~-n~~~~~~y~~~i~~l~~~GI~pivtL----~H-- 161 (392)
...++=++.++++|+|++=+.+.+ |.++|... .|.. ...|.+.+..+|++++++||++..=+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 446777899999999987655433 33444210 0111 11256778899999999999977443 10
Q ss_pred -----CCCchhHHhh-------h----CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 016308 162 -----FDSPQEIEDK-------Y----GA--WLS---PESQEDFGYFADICFKSFG 196 (392)
Q Consensus 162 -----~~~P~~l~~~-------~----gg--w~~---~~~~~~f~~ya~~~~~~fg 196 (392)
-..|.|+..+ + ++ |+| |++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1245564311 1 11 444 6889999999999999995
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=62.84 E-value=36 Score=29.42 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCeeEecc------cc--ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 102 EDIDLMESLGVNSYRFSI------SW--ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 102 eDi~l~k~lG~~~~R~si------~W--sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
+=++.+|++|+|++-+.. +| +++.+. ....+ -+.+.++|++|+++||++++-+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~----hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR----HPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC----CCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 346899999999999833 22 233222 12222 47889999999999999998664
No 71
>PLN02784 alpha-amylase
Probab=61.96 E-value=18 Score=40.86 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=47.4
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccccCCC--C--CCChh--HHHHHHHHHHHHHHcCCeeEEee
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRF--G--DVNSE--GINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~--g--~~n~~--~~~~y~~~i~~l~~~GI~pivtL 159 (392)
.+|....+.++.++++|++++=++=......+.|-. . .+|.+ ..+-++++|++|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999999999999887654444333310 0 12222 24568899999999999999986
No 72
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=61.71 E-value=19 Score=36.18 Aligned_cols=111 Identities=23% Similarity=0.418 Sum_probs=59.0
Q ss_pred ccccHHHHHHHHHcCCCeeEecc----ccccccccC---------------------------CCCCCC----hhHHHHH
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSI----SWARILPKG---------------------------RFGDVN----SEGINHY 141 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si----~WsRi~P~~---------------------------~~g~~n----~~~~~~y 141 (392)
|.||+..|+.|+=-|||.-=--. -|.|+.-+- -.|.+. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999998543211 133333221 012222 2234556
Q ss_pred HHHHHHHHHcCCeeEEeecCCCCchhHHhhh--------CCCC--------ChhhHHHHHHHHHHH----HHHhCCcceE
Q 016308 142 NKLIDALLLKGIQPFVTLTQFDSPQEIEDKY--------GAWL--------SPESQEDFGYFADIC----FKSFGDRVKY 201 (392)
Q Consensus 142 ~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~--------ggw~--------~~~~~~~f~~ya~~~----~~~fgd~V~~ 201 (392)
+++++++++.||+|++--+---.|..+.+++ +.|. .+ .-..|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999999887666788887765 2232 22 235666666555 56788 3445
Q ss_pred EE--Eecccc
Q 016308 202 WF--TINEPN 209 (392)
Q Consensus 202 w~--t~NEp~ 209 (392)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 53 888853
No 73
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=61.41 E-value=44 Score=34.80 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=66.1
Q ss_pred cHHHHHHHHHcCCCeeEecc-cccc-ccccCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SWAR-ILPKGRFGDVNSEGINHYNKLIDALLLKG-IQPFVTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~WsR-i~P~~~~g~~n~~~~~~y~~~i~~l~~~G-I~pivtL~H~~~P~~l~~~~ggw~ 176 (392)
-+|.+++|+++|+|.+-+++ +-+. +...- |+... .+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l--gR~~~--~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA--GRKDD--REEVLARLEELVARDRAAVVCDLI-FGLPG---------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh--CCCCC--HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC----------
Confidence 36789999999999888877 3322 22211 33221 344668899999999 66777876 67772
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCCC
Q 016308 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHP 222 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~ 222 (392)
++.+.|.+=.+.+.+-=-+.|..+...-||+......+..|.++
T Consensus 227 --qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12344444455544433367888888888886544444445554
No 74
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=61.35 E-value=40 Score=33.20 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=51.3
Q ss_pred HHHHHcCCCeeEeccc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHH
Q 016308 105 DLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQE 182 (392)
Q Consensus 105 ~l~k~lG~~~~R~si~--WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~ 182 (392)
+.+++.|++++-++.. -....|.-. |.............|..|+++|++++|.+=-+.-... -.+....+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~-g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG-GSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC-CCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5677899998887743 222222211 2111011234567899999999999998843221100 01345678
Q ss_pred HHHHHHHHHHHHhCC
Q 016308 183 DFGYFADICFKSFGD 197 (392)
Q Consensus 183 ~f~~ya~~~~~~fgd 197 (392)
.|++....+.++|+=
T Consensus 91 ~~~~a~~~~i~~y~~ 105 (294)
T cd06543 91 QLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888864
No 75
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=59.52 E-value=22 Score=37.27 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=44.3
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccc---cCC-------C------CCCChh--HHHHHHHHHHHHHHcCCeeE
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILP---KGR-------F------GDVNSE--GINHYNKLIDALLLKGIQPF 156 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P---~~~-------~------g~~n~~--~~~~y~~~i~~l~~~GI~pi 156 (392)
+.|.-..+-++.+++||++++=++=...-... .+- - |.+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 45555677799999999999988754332210 010 0 122222 24558899999999999999
Q ss_pred Eeec
Q 016308 157 VTLT 160 (392)
Q Consensus 157 vtL~ 160 (392)
+++.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9873
No 76
>PRK05402 glycogen branching enzyme; Provisional
Probab=59.43 E-value=64 Score=35.87 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=57.9
Q ss_pred ccccHHHH-HHHHHcCCCeeEeccccc---------------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLEDI-DLMESLGVNSYRFSISWA---------------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eDi-~l~k~lG~~~~R~si~Ws---------------Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
|.-..+.+ +.+|+||++++=+.=-.. .|.|.- |. .+=++++|++|.++||++|+++-
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~--Gt-----~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF--GT-----PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc--CC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 33344554 888999999997663211 122221 22 44588999999999999999863
Q ss_pred --CCCCc-----------hhHHh-----hhCCC-------CChhhHHHHHHHHHHHHHHhCC
Q 016308 161 --QFDSP-----------QEIED-----KYGAW-------LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 161 --H~~~P-----------~~l~~-----~~ggw-------~~~~~~~~f~~ya~~~~~~fgd 197 (392)
|+... .+... .+..| .++++.+.+.+-++.-+++|+=
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~i 398 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHI 398 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 54211 11000 01123 4677778888888888887753
No 77
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.61 E-value=56 Score=32.10 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=71.0
Q ss_pred cHHHHHHHHHcCC--CeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC---chh-------
Q 016308 100 YLEDIDLMESLGV--NSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQE------- 167 (392)
Q Consensus 100 y~eDi~l~k~lG~--~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~---P~~------- 167 (392)
.++-++.+++.|+ +++=+.+.|..-. +. -.+|.+.+---.++|++|++.|+++++.+.=+-. +..
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~-f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GD-FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--Cc-cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 4566788888885 5777777785431 11 3456555555779999999999998887642211 111
Q ss_pred --HHhhhC----------C------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 168 --IEDKYG----------A------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 168 --l~~~~g----------g------w~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
+.+..| | +.|++..+.|.+..+.+....|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 111001 1 56789999999988888877755 35778899996
No 78
>PRK12313 glycogen branching enzyme; Provisional
Probab=58.08 E-value=48 Score=36.13 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=58.6
Q ss_pred ccccHHH-HHHHHHcCCCeeEeccc--------c-------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLED-IDLMESLGVNSYRFSIS--------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eD-i~l~k~lG~~~~R~si~--------W-------sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
|.-..+. ++.+|+||++++=+.=- | -.|.|.- |. .+=++++|++|.++||++|+++.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~--Gt-----~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY--GT-----PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC--CC-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445566 49999999999976532 2 1122221 32 34588999999999999999863
Q ss_pred --CCCCch----hHH--------h---h-hCCC-------CChhhHHHHHHHHHHHHHHhCC
Q 016308 161 --QFDSPQ----EIE--------D---K-YGAW-------LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 161 --H~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~fgd 197 (392)
|+.... ++. + . +..| .++++.+.+.+-++.-+++||=
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~i 303 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHL 303 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 543110 110 0 0 0123 3577788888888888887653
No 79
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=57.75 E-value=68 Score=34.36 Aligned_cols=92 Identities=17% Similarity=0.318 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHHcCCCeeEeccc--------c-------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSIS--------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT- 160 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~--------W-------sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~- 160 (392)
+.-..+-++.+|+||++++-+.=- | -.+.|.- |. .+-++++|++|.++||++|+++.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~--G~-----~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY--GG-----PDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc--CC-----HHHHHHHHHHHHHCCCEEEEEEcc
Confidence 444566689999999999976521 2 1111111 22 44588999999999999999874
Q ss_pred -CCC---------CchhHHhh-hCCC------CCh---hhHHHHHHHHHHHHHHhC
Q 016308 161 -QFD---------SPQEIEDK-YGAW------LSP---ESQEDFGYFADICFKSFG 196 (392)
Q Consensus 161 -H~~---------~P~~l~~~-~ggw------~~~---~~~~~f~~ya~~~~~~fg 196 (392)
|.. -| |+... ..+| .++ .+.+.+.+-++.-+++||
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 432 12 22211 1233 234 666777777777676664
No 80
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=57.71 E-value=29 Score=33.50 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=40.4
Q ss_pred cHHHHHHHHHcCCCeeEeccccc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 100 YLEDIDLMESLGVNSYRFSISWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
-+|.++.||++|++.+-++++-+ ++.+.-. +..+ ++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~~s---~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-STHT---YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CCCC---HHHHHHHHHHHHHcCCEEEEeE
Confidence 48999999999999999998821 1223211 2223 6678899999999999865544
No 81
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=57.56 E-value=36 Score=32.91 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhh
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPES 180 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~ 180 (392)
+.+++.+++.|++.+|+.++=|...-....|.--++.++...+.++.+++.|+++.++..+| .+ +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 36899999999999999876443322211133335678899999999999999998876555 11 11 223
Q ss_pred HHHHHHHHHHHHH
Q 016308 181 QEDFGYFADICFK 193 (392)
Q Consensus 181 ~~~f~~ya~~~~~ 193 (392)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5566777777654
No 82
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=56.35 E-value=54 Score=33.03 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhH
Q 016308 102 EDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQ 181 (392)
Q Consensus 102 eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~ 181 (392)
.-|++|.+.|++-+=.|+ +.|++ .+...++.+.++++.+.+.|+++||+.. |.-|.+ -|| +...+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHH
Confidence 447888899998776665 33443 2445789999999999999999999984 887764 455 34445
Q ss_pred HHHHHH
Q 016308 182 EDFGYF 187 (392)
Q Consensus 182 ~~f~~y 187 (392)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555555
No 83
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=55.91 E-value=67 Score=31.42 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=66.0
Q ss_pred cHHHHHHHHHcC--CCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchhHHhhh--
Q 016308 100 YLEDIDLMESLG--VNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEIEDKY-- 172 (392)
Q Consensus 100 y~eDi~l~k~lG--~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~~l~~~~-- 172 (392)
.++-++.+++.| ++++=+.+.|.+-.-.+. -.+|++.+--...+|++|+++|+++++.+.-+ +.|..-+-+.
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~-f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCD-FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCccee-eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 567789999999 556777788874322111 24565555556799999999999988876533 2222111000
Q ss_pred -------------------CC---CCChhhHHHHHHHHHHHHHHhCCcceEEEEeccc
Q 016308 173 -------------------GA---WLSPESQEDFGYFADICFKSFGDRVKYWFTINEP 208 (392)
Q Consensus 173 -------------------gg---w~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp 208 (392)
.+ +.|++..+.|.+..+.+.+ .|- --+|+=+||+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gi-d~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGV-DCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCC-cEEecCCCCC
Confidence 11 4677888888777776544 432 2355668886
No 84
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=55.33 E-value=2.2e+02 Score=28.20 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=39.1
Q ss_pred HHHcCCCeeEec---c-ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 016308 107 MESLGVNSYRFS---I-SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFD 163 (392)
Q Consensus 107 ~k~lG~~~~R~s---i-~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~ 163 (392)
.++-|+..+=.. + .-.+..|... +-++.+-+..++++.+.++++|-..++=|+|.+
T Consensus 42 rA~gg~glii~~~~~v~~~~~~~~~~~-~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 42 RALGGAGLVIVEATAVSPEGRITPGDL-GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred HHcCCCcEEEEcceEECCCcCCCCCce-eecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 455566554322 1 1233444322 567888999999999999999999999999954
No 85
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=55.19 E-value=79 Score=30.60 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=47.8
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPE 179 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~ 179 (392)
-++|++...+.|++.+|+++..+. ++...+.++.++++|+++.+.+.--+ + .+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCC
Confidence 478999999999999999875433 45577899999999999887663101 1 222
Q ss_pred hHHHHHHHHHHHHH
Q 016308 180 SQEDFGYFADICFK 193 (392)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (392)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (275)
T cd07937 147 TLEYYVKLAKELED 160 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 35566666666544
No 86
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=55.00 E-value=35 Score=34.54 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=47.0
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
-++|++.+.+.|++.+|+.++-|.+.-...-+.=.++.++...+.|+.++++|+++.++..
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 3899999999999999999987754433211222356788899999999999999887664
No 87
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=54.79 E-value=30 Score=37.05 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=42.5
Q ss_pred ccccccHHHHHHHHHcCCCeeEecccccccccc-CC--C--CCCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPK-GR--F--GDVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~-~~--~--g~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
..+.-..+-++.+++||++++=++--...-.-. +- . -.+|+. ..+-++++|++++++||++|+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344556677899999999998776433221100 00 0 012221 245688999999999999999873
No 88
>PRK03705 glycogen debranching enzyme; Provisional
Probab=54.78 E-value=27 Score=38.35 Aligned_cols=55 Identities=16% Similarity=0.373 Sum_probs=37.4
Q ss_pred HHHHHHcCCCeeEeccc-----------------c-------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 104 IDLMESLGVNSYRFSIS-----------------W-------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~-----------------W-------sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
++.+|+||++++-+.=- | -.+.|.- |.-....++-+++||++|.++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y--gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY--ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc--CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 89999999999876421 1 1222221 21111235679999999999999999987
Q ss_pred c
Q 016308 160 T 160 (392)
Q Consensus 160 ~ 160 (392)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 89
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=54.35 E-value=1e+02 Score=31.63 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=62.7
Q ss_pred cHHHHHHHHHcCCCeeEecc-cc-ccccccCCCCC-CChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHhhhCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGD-VNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAW 175 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~~g~-~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~~~ggw 175 (392)
-++.++.|+++|+|.+-+++ +- .++...- |+ .+ .+-..+.++.+++.|++ +-++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg--------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH--------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 46889999999999666665 22 2222221 22 22 33456889999999998 667776 67773
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCC
Q 016308 176 LSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCH 221 (392)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~ 221 (392)
++.+.+.+=++.+.+-=-+.|..+...-||+......+..|.+
T Consensus 179 ---qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 ---QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ---CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1233444444444332235677777777887654444555543
No 90
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=54.15 E-value=47 Score=34.66 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 101 LEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
+|.+++|+++|++.+-+++ +-+ ++...-. -..+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIK-KGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888888 332 2222111 1123 45677999999999999888876 4555
No 91
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.94 E-value=94 Score=31.33 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCccCccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHH
Q 016308 90 GDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIE 169 (392)
Q Consensus 90 ~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~ 169 (392)
+-+|.=||+ |+- .....+.|+..+|+. | |++-.+ +....+++.++++|+-.=+...|-.+..-+.
T Consensus 76 PLVaDiHf~-~rl-a~~~~~~g~~k~RIN-------P----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~ 140 (361)
T COG0821 76 PLVADIHFD-YRL-ALEAAECGVDKVRIN-------P----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLL 140 (361)
T ss_pred CEEEEeecc-HHH-HHHhhhcCcceEEEC-------C----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHH
Confidence 334544665 432 333457788888863 2 665433 2688999999999999999999999999999
Q ss_pred hhhCCCCChhhHHHHHHHHHHHH
Q 016308 170 DKYGAWLSPESQEDFGYFADICF 192 (392)
Q Consensus 170 ~~~ggw~~~~~~~~f~~ya~~~~ 192 (392)
++|++-..+..++--.++++.+-
T Consensus 141 ~ky~~pt~ealveSAl~~a~~~e 163 (361)
T COG0821 141 EKYGGPTPEALVESALEHAELLE 163 (361)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 99987655556666666666643
No 92
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.86 E-value=56 Score=34.24 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch----hHHh---h--
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ----EIED---K-- 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~----~l~~---~-- 171 (392)
++|++.+.+.|++.+|+.++-+.+ .-..+.|+.++++|+++.+++..-+-|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 566799999999999999865443 1255688999999998877776545452 1111 1
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 -----------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 -----------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
-.|...|. ...+.++.+-++++ ..-.+.+-|-..+-
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 165 EMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred HcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 13455544 45556666666775 33455677776653
No 93
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=53.61 E-value=34 Score=36.70 Aligned_cols=64 Identities=14% Similarity=0.389 Sum_probs=43.2
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccccCCCC-------CCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFG-------DVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g-------~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
.-+.-..+.++.+++||++++=++=-+.. |....| .+|+. ..+-++++|+++.++||++|+++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555678899999999999987643321 111001 12221 245688999999999999999874
No 94
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=53.56 E-value=43 Score=34.09 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
++|++.+.+.|++.+|+.++-+.+.-..+-+.--++.++...+.++.+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 789999999999999999977665433211333456788999999999999999888764
No 95
>PRK09505 malS alpha-amylase; Reviewed
Probab=52.44 E-value=33 Score=37.87 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=41.6
Q ss_pred cHHHHHHHHHcCCCeeEecccccccc-----------c----cCC----CCCCChh--HHHHHHHHHHHHHHcCCeeEEe
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARIL-----------P----KGR----FGDVNSE--GINHYNKLIDALLLKGIQPFVT 158 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~-----------P----~~~----~g~~n~~--~~~~y~~~i~~l~~~GI~pivt 158 (392)
..+-++.+++||++++=++=-...+. | .+- --.+|+. ..+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999999875444331 1 000 0012322 3556899999999999999998
Q ss_pred ec
Q 016308 159 LT 160 (392)
Q Consensus 159 L~ 160 (392)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 74
No 96
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.31 E-value=65 Score=32.51 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
++.++++|.+++-+-+-|. |+.. ..+|.+-+++..++.++|.++||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~-~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED-DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc-hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999986 4421 34577889999999999999999988854
No 97
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.75 E-value=63 Score=31.21 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 161 (392)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5889999999999999987432 2667889999999999999998864
No 98
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.33 E-value=55 Score=31.02 Aligned_cols=75 Identities=16% Similarity=0.364 Sum_probs=50.0
Q ss_pred ccccccHHHHHHHHHcCCCeeEe----------------------ccccccccccCCCCCCChhHHHHHHHHHHHHHHcC
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRF----------------------SISWARILPKGRFGDVNSEGINHYNKLIDALLLKG 152 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~----------------------si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~G 152 (392)
+---.-+.-++++++||.+++.| ++ | +||. |-+| ++.+.+++..+++.|
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT---GGId---l~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT---GGID---LDNFEEIVQIALDAG 202 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC---CCcc---HHhHHHHHHHHHHcC
Confidence 33345667799999999998875 33 3 5776 5578 788999999999999
Q ss_pred CeeEEeecCCCCchhHHhhhCCCCChhhHH
Q 016308 153 IQPFVTLTQFDSPQEIEDKYGAWLSPESQE 182 (392)
Q Consensus 153 I~pivtL~H~~~P~~l~~~~ggw~~~~~~~ 182 (392)
++-++- |- -..+.++..|-+.++-+.
T Consensus 203 v~kviP--HI--YssiIDk~tG~TrpedV~ 228 (236)
T TIGR03581 203 VEKVIP--HV--YSSIIDKETGNTRVEDVK 228 (236)
T ss_pred CCeecc--cc--ceeccccccCCCCHHHHH
Confidence 997643 31 112334435655554443
No 99
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=49.69 E-value=1.1e+02 Score=30.71 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=56.6
Q ss_pred cHHHHHHHHHcCCCeeEeccc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~--WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~ 176 (392)
-+|.+++|+++|++.+-+++. -.++...-. ...+ .+-..+.|+.+++.|+..+ +.+. +++|.
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~-r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------- 163 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIG-RTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------- 163 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcC-CCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC----------
Confidence 468899999999997777762 223333221 1233 4567799999999999743 4443 56663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhh
Q 016308 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~ 213 (392)
++.+.+.+-.+.+.+.=-+.|..+...-+|.....
T Consensus 164 --qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 164 --QTIEDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred --CCHHHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 12344555555543322234555545567764433
No 100
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=48.97 E-value=48 Score=35.38 Aligned_cols=64 Identities=17% Similarity=0.350 Sum_probs=40.5
Q ss_pred ccccHHHHHHHHHcCCCeeEecccccccc-ccCC--C--CCCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWARIL-PKGR--F--GDVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~WsRi~-P~~~--~--g~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
+.-..+-++.+++||++++=++=-.+.-. ..|- . -.+|++ ..+=++++|++++++||++|+++.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 33455668999999999987663221100 0000 0 022322 245688999999999999999863
No 101
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=48.66 E-value=93 Score=32.65 Aligned_cols=94 Identities=21% Similarity=0.432 Sum_probs=56.1
Q ss_pred cHHH-HHHHHHcCCCeeEec-------ccccc-ccccCC-CCCC---------ChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLED-IDLMESLGVNSYRFS-------ISWAR-ILPKGR-FGDV---------NSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eD-i~l~k~lG~~~~R~s-------i~WsR-i~P~~~-~g~~---------n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
++.| +.++|+|.+...|+. ..|.. |-|... +-++ |+=| .+++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4666 689999999999853 24532 222210 0011 2112 45899999999999999985
Q ss_pred CCCCchhHHhhhCCCCChhhHHHHHHHHHH--------HHHHhCC----cceEEEEeccc
Q 016308 161 QFDSPQEIEDKYGAWLSPESQEDFGYFADI--------CFKSFGD----RVKYWFTINEP 208 (392)
Q Consensus 161 H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~--------~~~~fgd----~V~~w~t~NEp 208 (392)
= |. ..-+....|++||.. .-+..|- .|++|.+=||.
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 1 11 122334445555432 2333444 49999999997
No 102
>PRK14705 glycogen branching enzyme; Provisional
Probab=48.44 E-value=83 Score=37.18 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHcCCCeeEecc--------ccccccccCCCCCCChh--HHHHHHHHHHHHHHcCCeeEEeec--CCCCchhHHhh
Q 016308 104 IDLMESLGVNSYRFSI--------SWARILPKGRFGDVNSE--GINHYNKLIDALLLKGIQPFVTLT--QFDSPQEIEDK 171 (392)
Q Consensus 104 i~l~k~lG~~~~R~si--------~WsRi~P~~~~g~~n~~--~~~~y~~~i~~l~~~GI~pivtL~--H~~~P~~l~~~ 171 (392)
++.+|+||++++-+.= +|- -.|..- -.++.. ..+=++.+|++|.++||.+|+++. |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y-~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSY-FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCcccc-CCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 6899999999987652 231 111100 001100 234488999999999999999874 54211111000
Q ss_pred h----------------CCC-------CChhhHHHHHHHHHHHHHHhC
Q 016308 172 Y----------------GAW-------LSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 172 ~----------------ggw-------~~~~~~~~f~~ya~~~~~~fg 196 (392)
+ ..| .++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 0 112 346777777787888788775
No 103
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.10 E-value=96 Score=31.05 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=62.6
Q ss_pred cHHHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHH--HHHHHHHHHcCCeeEEeecCCCCc--------hh
Q 016308 100 YLEDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHY--NKLIDALLLKGIQPFVTLTQFDSP--------QE 167 (392)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y--~~~i~~l~~~GI~pivtL~H~~~P--------~~ 167 (392)
.++-++.+++.||. ++=+.+.|..-. ++ -.+|.+.+--- +++|++|+++|++.++.+.-+-.+ .+
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~-f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRR--RD-FTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCc--cc-eecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 34555666666654 344445554221 11 22343333333 799999999999998877544322 11
Q ss_pred HHh--h-----------h--------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 168 IED--K-----------Y--------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 168 l~~--~-----------~--------g---gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
-+. + + + -+.|++..+.|.+..+.+....|- .-+|+=+|||..
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 110 0 0 1 156788888887777776666554 367889999964
No 104
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=47.72 E-value=32 Score=38.41 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=39.6
Q ss_pred cccccHH-HHHHHHHcCCCeeEecccccc---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 96 HYHRYLE-DIDLMESLGVNSYRFSISWAR---------------ILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 96 ~y~~y~e-Di~l~k~lG~~~~R~si~WsR---------------i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
.|.-+.+ -+..+|+||++++-+.=-... +.|.- |. .+-++++|++|.++||.+|+++
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~--Gt-----p~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS--GT-----PEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc--CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 3444333 389999999999987632221 11111 22 2458899999999999999987
Q ss_pred c
Q 016308 160 T 160 (392)
Q Consensus 160 ~ 160 (392)
.
T Consensus 321 V 321 (758)
T PLN02447 321 V 321 (758)
T ss_pred c
Confidence 5
No 105
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=47.66 E-value=1.1e+02 Score=30.22 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCC--eeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchhHH--hh
Q 016308 101 LEDIDLMESLGVN--SYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEIE--DK 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~--~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~~l~--~~ 171 (392)
++-++.+++.||- ++=+.+.|-. ..+ . -.+|.+.+---.++|++|+++|+++++.++-+ +.+.+-+ ++
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~-f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~ 103 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGE-WKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEK 103 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc--CCCcee-EEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHC
Confidence 4445666666554 4444443321 111 1 23455555456799999999999988876422 1121110 00
Q ss_pred -------h-----------CC---CCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 -------Y-----------GA---WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 -------~-----------gg---w~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
. .+ |.|++..+.|.+..+..+...|- --+|+=+|||...
T Consensus 104 g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 104 GYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCcc
Confidence 0 11 45777777776655544444443 4678899999854
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.26 E-value=3e+02 Score=27.33 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=83.2
Q ss_pred ccccc---cCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC---chhH---------Hhhh---CCCCC------
Q 016308 122 ARILP---KGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQEI---------EDKY---GAWLS------ 177 (392)
Q Consensus 122 sRi~P---~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~---P~~l---------~~~~---ggw~~------ 177 (392)
.+..| ... +-+|.+-+..++++.+.++++|-..++=|.|-+. +.+. .... ..+..
T Consensus 63 ~~~~~~~~~~~-~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNV-VLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45566 222 6788889999999999999999999999999432 1000 0000 00111
Q ss_pred ---hhhHHHHHHHHHHHHHHhC-CcceEEEEecccchhhhcccccCCCC-CC--CCCCCCCCCCCCCCCchHHHHHHHHH
Q 016308 178 ---PESQEDFGYFADICFKSFG-DRVKYWFTINEPNMQVTLSYRLGCHP-PA--HCSQPFGNCSQGNSEEEPFIAAHNLI 250 (392)
Q Consensus 178 ---~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~~~~hnll 250 (392)
+++++.|++=|+++ ++.| |-|. +..-.||+...|. |. .+.+ ..|.+ +-|-.
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgVe---------ih~a~gyLl~qFlsp~~N~R~D-----~yGGs-------lenR~ 199 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGVQ---------IHAAHGYLLSQFLSPLTNKRTD-----EYGGS-------LENRA 199 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEEE---------EchhhhhHHHHhcCCcCCCCCc-----cCCCC-------HHHHH
Confidence 24677788766664 3443 2232 2355677776553 32 1111 01111 22434
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEecCcccccCCCCHHHH-HHHHHHH
Q 016308 251 LSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPISSSTADK-LAAERAQ 298 (392)
Q Consensus 251 lAHA~Av~~~re~~~~~~~~kVGi~~~~~~~yP~s~~p~D~-~Aa~~~~ 298 (392)
.--...++.+|+.. .++..|++-++...+.+..-++++. ..++...
T Consensus 200 rf~~EiI~aIR~av--G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le 246 (338)
T cd04733 200 RLLLEIYDAIRAAV--GPGFPVGIKLNSADFQRGGFTEEDALEVVEALE 246 (338)
T ss_pred HHHHHHHHHHHHHc--CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHH
Confidence 43445666777653 2456889888765444443345543 3344333
No 107
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=47.14 E-value=1.5e+02 Score=32.31 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=59.2
Q ss_pred ccccHHHH-HHHHHcCCCeeEec-cccccccc-cCC--CC--CCChh--HHHHHHHHHHHHHHcCCeeEEeec--CCCC-
Q 016308 97 YHRYLEDI-DLMESLGVNSYRFS-ISWARILP-KGR--FG--DVNSE--GINHYNKLIDALLLKGIQPFVTLT--QFDS- 164 (392)
Q Consensus 97 y~~y~eDi-~l~k~lG~~~~R~s-i~WsRi~P-~~~--~g--~~n~~--~~~~y~~~i~~l~~~GI~pivtL~--H~~~- 164 (392)
|.-..+.+ +.+|+||++++=+. |....-.. .|- .+ .++.. ..+=++++|++|.++||++|+++. |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 33344564 89999999999884 43321100 000 00 01111 134588999999999999999874 4321
Q ss_pred ----------chhHHh--h---hCCC-------CChhhHHHHHHHHHHHHHHhCC
Q 016308 165 ----------PQEIED--K---YGAW-------LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 165 ----------P~~l~~--~---~ggw-------~~~~~~~~f~~ya~~~~~~fgd 197 (392)
|.+... . +..| .++++.+.+.+-++..+++|+=
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~i 289 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHI 289 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCC
Confidence 111110 0 0112 3577888888888888888753
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.03 E-value=55 Score=30.74 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=42.1
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEee-cCCCCc
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTL-TQFDSP 165 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL-~H~~~P 165 (392)
+-+.+++=+++++++|.+.+|+...+. |... ..+.....++..+++.+.+.+.||...+=- .+++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345667779999999999998643321 1110 011223345667888888999999877743 344444
No 109
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.87 E-value=80 Score=34.24 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch----hHHhh-----
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ----EIEDK----- 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~----~l~~~----- 171 (392)
++|++.+++.|++.+|+..+.+.+ +-....|+.++++|+...+++.+-+.|. .+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 456899999999999999766543 2356777888888988888776555552 11110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 -----------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 -----------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
-.|...| ....+.++.+-++++ ..-...+-|-..+-
T Consensus 160 ~~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 1344444 455566666667775 33456788877653
No 110
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=46.82 E-value=1.1e+02 Score=31.06 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=54.8
Q ss_pred HHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHH
Q 016308 108 ESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYF 187 (392)
Q Consensus 108 k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 187 (392)
.+.|++.+|+ -| |++-.. -+..+.+++.++++|+-.=+...|-.++.-+.++||+-..+..++.-.++
T Consensus 98 ~~~G~~~iRI-------NP----GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 98 AEAGADALRI-------NP----GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHhCCCEEEE-------CC----CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 3789999964 33 666320 24688999999999999999999999999999998653445566766777
Q ss_pred HHHH
Q 016308 188 ADIC 191 (392)
Q Consensus 188 a~~~ 191 (392)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 7665
No 111
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=46.31 E-value=1.3e+02 Score=30.44 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=63.6
Q ss_pred CCccCccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHH
Q 016308 90 GDVAVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIE 169 (392)
Q Consensus 90 ~~~a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~ 169 (392)
+-+|.=||+ |+.-+. ..+.|++.+|+. + |++-. -+..+.+++.++++|+-.=+...|-.++.-+.
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P--GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P--GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C--CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 445666765 444333 347799999873 2 66643 35788999999999999999999999999999
Q ss_pred hhhCCCCChhhHHHHHHHHHHH
Q 016308 170 DKYGAWLSPESQEDFGYFADIC 191 (392)
Q Consensus 170 ~~~ggw~~~~~~~~f~~ya~~~ 191 (392)
++||+=..+..++.-.++++.|
T Consensus 139 ~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 9986544455666666777665
No 112
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=46.31 E-value=62 Score=31.06 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=52.7
Q ss_pred HHHHHHHHHcC----CCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCC
Q 016308 101 LEDIDLMESLG----VNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 101 ~eDi~l~k~lG----~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~ 176 (392)
.+|++...+.| ++.+|+.++.+.+.-..+-+.=-++.++...+.++.+++.|++..++..+ .+
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~-- 138 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------AT-- 138 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CC--
Confidence 78999999999 99999987655443221102222346788889999999999987755421 12
Q ss_pred ChhhHHHHHHHHHHHHH
Q 016308 177 SPESQEDFGYFADICFK 193 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~ 193 (392)
+...+.+.++++.+.+
T Consensus 139 -~~~~~~~~~~~~~~~~ 154 (268)
T cd07940 139 -RTDLDFLIEVVEAAIE 154 (268)
T ss_pred -CCCHHHHHHHHHHHHH
Confidence 1235666777777643
No 113
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=45.88 E-value=32 Score=40.56 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCeeEecccccccc-----ccCC---CC-------CCChh----HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 102 EDIDLMESLGVNSYRFSISWARIL-----PKGR---FG-------DVNSE----GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 102 eDi~l~k~lG~~~~R~si~WsRi~-----P~~~---~g-------~~n~~----~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
+.|+.+|+||++++=+.=-..... +.+. .| .+|.. ..+=++++|++|.++||++|+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 568899999999997753221111 0000 00 11111 356689999999999999999863
No 114
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=45.74 E-value=1.2e+02 Score=32.49 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCeeEeccc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh
Q 016308 101 LEDIDLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~--WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~ 178 (392)
++.+++|+++|++.+-+++. -.++.-.-+.| .+ .+-..+.++.++++|+++.+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999997777762 33333221112 22 44566888999999998777775 56662
Q ss_pred hhHHHHHHHHHHHHH--HhC-CcceEEEEecccchhhhcccccCCCCC
Q 016308 179 ESQEDFGYFADICFK--SFG-DRVKYWFTINEPNMQVTLSYRLGCHPP 223 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~--~fg-d~V~~w~t~NEp~~~~~~gy~~g~~~P 223 (392)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|+.....-|..|.|.|
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 224455555566665 344 567777666666655444466666655
No 115
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.68 E-value=1.1e+02 Score=30.67 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
++.+|++|.++..|=+=|. |+.. ..+|..-.++.+++.++|++++|--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~-~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP-DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999998886 5543 45888889999999999999999988887665543
No 116
>PRK10785 maltodextrin glucosidase; Provisional
Probab=45.58 E-value=54 Score=35.56 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHcCCCeeEecccc-------------ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 99 RYLEDIDLMESLGVNSYRFSISW-------------ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~W-------------sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
-..+-++.+++||++++=++=-. .+|.|.- | ..+=++++|+++.++||++|+++-
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~--G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL--G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc--C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566899999999998876322 2222221 2 234588999999999999999874
No 117
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.30 E-value=3.3e+02 Score=27.26 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchh----------HHhhhCC-----CCC---hhhHHHHHHHHHHHH
Q 016308 131 GDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQE----------IEDKYGA-----WLS---PESQEDFGYFADICF 192 (392)
Q Consensus 131 g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~----------l~~~~gg-----w~~---~~~~~~f~~ya~~~~ 192 (392)
+-++++.+..++++.+.++++|-..++=|.|.+.-.. ......+ ... +++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999654110 0000000 110 267888888777765
Q ss_pred HHhCCcceEEEEecccchhhhcccccCCC-CCC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016308 193 KSFGDRVKYWFTINEPNMQVTLSYRLGCH-PPA--HCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQG 269 (392)
Q Consensus 193 ~~fgd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~ 269 (392)
+-==|-|. +.+-.||+...| -|. ...+. .|.+ +-|-+.--...++.+|+.. +
T Consensus 153 ~aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~-----yGGs-------lenR~Rf~~eii~~ir~~~----~ 207 (337)
T PRK13523 153 EAGFDVIE---------IHGAHGYLINEFLSPLSNKRTDE-----YGGS-------PENRYRFLREIIDAVKEVW----D 207 (337)
T ss_pred HcCCCEEE---------EccccchHHHHhcCCccCCcCCC-----CCCC-------HHHHHHHHHHHHHHHHHhc----C
Confidence 53113333 235567777654 232 11110 1111 2333343445666677642 4
Q ss_pred CcEEEEecCcccccCCCCHHHH
Q 016308 270 GSIGIILNTLWFEPISSSTADK 291 (392)
Q Consensus 270 ~kVGi~~~~~~~yP~s~~p~D~ 291 (392)
..||+-++...+.+..-.++|.
T Consensus 208 ~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 208 GPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred CCeEEEecccccCCCCCCHHHH
Confidence 6788888765544443345554
No 118
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.81 E-value=1.2e+02 Score=30.58 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 103 DIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 103 Di~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
+++.+|++|.++..|=+=|. |++. -.+|..-.++.+++.++|++++|--++-+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~-~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGD-EEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 47889999999999988886 5532 45888889999999999999999999988766543
No 119
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.67 E-value=53 Score=32.09 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=47.4
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
-++|++...+.|++.+-+.++=|...-..+-+.=-++.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 579999999999999888876555444322133355689999999999999999988887
No 120
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=44.30 E-value=89 Score=31.59 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=60.2
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~~~ggw~ 176 (392)
-++.++.|+++|+|.+-+++ .-+-++- .-|+.. ..+-..+.|+.+++.|+. .-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999555555 2222211 002221 134466789999999997 556765 56662
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
++.+.|.+-.+.+.+-=-+.|..+...-||+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235667777777655333678888888888753
No 121
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=44.11 E-value=95 Score=32.19 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=40.7
Q ss_pred cccccHHH-----HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 96 HYHRYLED-----IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 96 ~y~~y~eD-----i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
.|.+|.+| +++..+-|++.||+-=+ .|. .+-...-|+..+++|.....++..-..|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDA------------lND--~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDA------------LND--VRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechh------------ccc--hhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 57888888 57888999999996422 221 3446688899999999988888743333
No 122
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.99 E-value=1.4e+02 Score=29.37 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=64.6
Q ss_pred cHHHHHHHHHcCC--CeeEeccccccccccC--C-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchhH--H
Q 016308 100 YLEDIDLMESLGV--NSYRFSISWARILPKG--R-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEI--E 169 (392)
Q Consensus 100 y~eDi~l~k~lG~--~~~R~si~WsRi~P~~--~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~~l--~ 169 (392)
..+-++.+++.|| +++=+.+.|......+ . .-.+|++-+---+++|++|+++|++.++.++-+ +.|..- .
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 3455666776665 4666666775433211 0 022444444445689999999999999887643 233321 1
Q ss_pred hh-h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 170 DK-Y-------------------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 170 ~~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
++ + + -+.|++..+.|.+..+.+ ...|- --+|+=+|||...
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 10 0 1 145788888887777665 33332 2467899999643
No 123
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=43.96 E-value=1e+02 Score=31.64 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
.|++||++++++||+.|=+.|- .. ..+. .+....+++.+.+.|.+.++.+-
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~--d~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS--DSWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC--Cccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 4899999999999999998886 11 2344 34567889999999999988864
No 124
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=42.80 E-value=1.7e+02 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHcCCCeeEeccc-ccccccc-CCCCCCChhHHHHHHHHHHHHHHcC-CeeEEee
Q 016308 98 HRYLEDIDLMESLGVNSYRFSIS-WARILPK-GRFGDVNSEGINHYNKLIDALLLKG-IQPFVTL 159 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~-WsRi~P~-~~~g~~n~~~~~~y~~~i~~l~~~G-I~pivtL 159 (392)
..-++.++.|++.|++.+.+|++ ++.-.-+ -. ...+ .+.+.+.|+.++++| +.+-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34478899999999999999986 5432111 11 1122 467889999999999 6555444
No 125
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.62 E-value=96 Score=29.66 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
.+|++..++.|++.+|+.++.+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998766543 2356899999999999999884
No 126
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=42.32 E-value=1.4e+02 Score=29.94 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeeEecc-ccc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCCC
Q 016308 101 LEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWLS 177 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~~ 177 (392)
++.++.++++|+|.+-+++ +-+ ++...- |+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l--gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL--GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999777776 343 222221 4322 14457789999999999855 6776 66663
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
++.+.|.+-.+.+.+-=-+.|..+...=||+
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2244555555554432223455554444554
No 127
>PRK09936 hypothetical protein; Provisional
Probab=42.21 E-value=1.7e+02 Score=28.89 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=45.0
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIED 170 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~ 170 (392)
|++=++.++.+|+++. =+.|++.--..- |.- ++ +..+.++.+.+.||+++|.|+ +| |.|...
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~f-g~~--~g--~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADF-GGQ--RG--WLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCc-ccc--hH--HHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 5666789999999985 357988822111 222 33 678999999999999999997 66 666553
No 128
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=41.37 E-value=98 Score=31.01 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHHcCC--CeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC-CCchhHHhh--hCCCCCh
Q 016308 104 IDLMESLGV--NSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF-DSPQEIEDK--YGAWLSP 178 (392)
Q Consensus 104 i~l~k~lG~--~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~-~~P~~l~~~--~ggw~~~ 178 (392)
++.+++.+| +++=+.|.|..-. +. -.+|.+.+---++++++|++.|++.++.+.-+ ..-..+... +--|.++
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~~--~~-Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp 106 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDNY--RT-FTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRP 106 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcCC--Cc-eeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCH
Confidence 444444443 4555555554211 11 23444333334689999999999987765411 100000000 1126678
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEEecccchhhh
Q 016308 179 ESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~ 213 (392)
+..+.|.+..+.+.+ .|- .-.|+=+|||.+...
T Consensus 107 ~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~ 139 (332)
T cd06601 107 DVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccC
Confidence 888877666554433 232 358899999987654
No 129
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=40.83 E-value=67 Score=35.55 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=36.5
Q ss_pred HHHHHHcCCCeeEecccccccc----c-cC---CCC-------CCChh-----HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 104 IDLMESLGVNSYRFSISWARIL----P-KG---RFG-------DVNSE-----GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsRi~----P-~~---~~g-------~~n~~-----~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
|+.+|+||++++-+.=--.-.. + .+ ..| .++.. .++-++++|++|.++||++|+++.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999998763211110 0 00 000 11211 255689999999999999999874
No 130
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.52 E-value=91 Score=26.98 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCCCc---hhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcc
Q 016308 138 INHYNKLIDALLLKGIQPFVTLTQFDSP---QEIEDKYGAWLSPESQEDFGYFADICFKSFGDRV 199 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~pivtL~H~~~P---~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V 199 (392)
.+=+.-+++.|++.|++|++.+. | .|.. |-|. +++..+.|.+=.+..++++|=.|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~----PvNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQ----PVNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--------HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHHcCCceEEEec----CCcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCEE
Confidence 44467899999999999999984 5 3442 4564 67777888888888888888743
No 131
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.48 E-value=78 Score=31.78 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=54.2
Q ss_pred cHHHHHHHHHcCCCeeEeccc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~ 176 (392)
-++.++.|+++|++.+-+++. -+ ++...- |+.. ..+-+.+.|+.+++.|+.++ ++|. +++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l--gR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------- 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL--GRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL---------- 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC----------
Confidence 368899999999996666662 32 233221 3311 15567789999999999754 5554 56662
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CcceEEEEecccc
Q 016308 177 SPESQEDFGYFADICFKSFG-DRVKYWFTINEPN 209 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~ 209 (392)
++.+.+.+-.+.+.+ ++ +.+..+...=||+
T Consensus 164 --qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 --QTLNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred --CCHHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 123445555555443 33 3455444444554
No 132
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.23 E-value=2.6e+02 Score=27.32 Aligned_cols=152 Identities=20% Similarity=0.160 Sum_probs=82.6
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC---chhHH---------hhhCCCC-----C----hhhH
Q 016308 123 RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQEIE---------DKYGAWL-----S----PESQ 181 (392)
Q Consensus 123 Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~---P~~l~---------~~~ggw~-----~----~~~~ 181 (392)
+..|... |-++++-+..++++++.++++|-..++=|.|-+. |.... ....... + .+++
T Consensus 62 ~~~~~~~-~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQL-GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCCc-CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 3344322 6789999999999999999999999999998532 11000 0000001 1 3578
Q ss_pred HHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCC-CCC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 016308 182 EDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCH-PPA--HCSQPFGNCSQGNSEEEPFIAAHNLILSHATAVD 258 (392)
Q Consensus 182 ~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~ 258 (392)
+.|++-|+.+.+.=-|-|. +..-.||+...| .|. ...+ ..|.+ +-|-..--...++
T Consensus 141 ~~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d-----~yGgs-------~enr~r~~~eii~ 199 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTD-----EYGGS-------LENRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCc-----ccCCC-------HHHHHHHHHHHHH
Confidence 8999988887664223333 223456665433 232 1111 00111 1122222345666
Q ss_pred HHHHhhcCCCCCcEEEEecCcccccCCCCHHHH-HHHHHHH
Q 016308 259 IYRTKYQKDQGGSIGIILNTLWFEPISSSTADK-LAAERAQ 298 (392)
Q Consensus 259 ~~re~~~~~~~~kVGi~~~~~~~yP~s~~p~D~-~Aa~~~~ 298 (392)
.+|+.. .++..||+-++.....+...++++. ..++...
T Consensus 200 avr~~~--g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 200 AVREAV--GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred HHHHHc--CCCceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 777653 2466889888875554433345553 3344333
No 133
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=39.85 E-value=2e+02 Score=28.45 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC-----chhHHhh--
Q 016308 101 LEDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS-----PQEIEDK-- 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~-----P~~l~~~-- 171 (392)
++-++.+++.++- ++=+.+.|..- .+. -.+|.+.+---.++|+.|+++|++.++.++-+-. +...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~--~~~-f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMDS--YRL-FTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhCC--CCc-eeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 3445555655554 44455555431 111 2345544444568999999999998877643311 2221110
Q ss_pred -------h----------C-----CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 172 -------Y----------G-----AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 172 -------~----------g-----gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
. | -|.|++..+.|.+..+.+....|- .-.|+=+|||..
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCcc
Confidence 0 1 156788888888888776655544 357889999964
No 134
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.79 E-value=75 Score=31.87 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 161 (392)
.+|++...+.|++.+|+...+++. +.-.+.|+.+++.|++..+.+..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998755432 12478999999999999988853
No 135
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.07 E-value=2.2e+02 Score=28.62 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=60.5
Q ss_pred cHHHHHHHHHcCCCeeEecc-ccc-cccccCCCCC-CChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHhhhCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGD-VNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAW 175 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~~g~-~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~~~ggw 175 (392)
-+|.+++|+++|++.+-+++ +-+ ++...- |+ .+ .+-..+.++.+++.|+. +.++|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg--------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG--------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------
Confidence 46889999999999666666 222 222211 22 23 44567899999999998 667765 55552
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CcceEEEEecccchhhhcccccCCC
Q 016308 176 LSPESQEDFGYFADICFKSFG-DRVKYWFTINEPNMQVTLSYRLGCH 221 (392)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~ 221 (392)
++.+.|.+=.+.+.+ ++ +.|..+...-||+.....-+..|.+
T Consensus 172 ---qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~ 214 (375)
T PRK05628 172 ---ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGEL 214 (375)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCC
Confidence 224455555555443 44 4566555555776544333333433
No 136
>PRK07094 biotin synthase; Provisional
Probab=38.93 E-value=54 Score=32.22 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHcCCCeeEeccc-c-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 99 RYLEDIDLMESLGVNSYRFSIS-W-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~-W-sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
+-+|+++.|+++|++.+-++++ - .++...-. ...+ .+-+.+.|+.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~-~~~s---~~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH-PGMS---FENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC-CCCC---HHHHHHHHHHHHHcCCeecceEE-EECC
Confidence 4589999999999999998884 2 24433321 1122 55678899999999998665543 3444
No 137
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.26 E-value=2.2e+02 Score=28.11 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred cHHHHHHHHHcCCC--eeEeccccccccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC---chhHHhhh-
Q 016308 100 YLEDIDLMESLGVN--SYRFSISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS---PQEIEDKY- 172 (392)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~---P~~l~~~~- 172 (392)
..+-++.+++.||. ++=+.+.|....-... .-.+|.+.+---++||++|+++|++.++.++-+-. |..-+-+.
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 34556677777764 4444445544311000 01344444434669999999999999987754322 22111000
Q ss_pred --------C----------C------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 173 --------G----------A------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 173 --------g----------g------w~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
| | +.|++..+.|.+..+..+...|- .-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 1 35777777777766555554443 357788999974
No 138
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=38.10 E-value=2.1e+02 Score=29.43 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=58.3
Q ss_pred cHHHHHHHHHcCCCeeEeccccccc-----------cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARI-----------LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT-------- 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi-----------~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-------- 160 (392)
..+-++.++++|++.+-+.--|-.- +|+. .+| +.| ...+++.+++.||++=+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~--~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP--KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT--TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh--hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4555788999999998888889643 2332 222 124 66899999999999755220
Q ss_pred --CCCCchhHHhhhC-----C-------CCChhhHHHHHHHHHHHHHHhC
Q 016308 161 --QFDSPQEIEDKYG-----A-------WLSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 161 --H~~~P~~l~~~~g-----g-------w~~~~~~~~f~~ya~~~~~~fg 196 (392)
.-.+|.|+....+ | ..++++.+...+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1246888653211 1 2467888888888888888886
No 139
>PLN02389 biotin synthase
Probab=37.97 E-value=96 Score=31.70 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHcCCCeeEecccccc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 98 HRYLEDIDLMESLGVNSYRFSISWAR-ILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~WsR-i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
..-+|.++.||++|++.|-.+++=++ +.++-. ..-+ ++..-+.++.+++.||++..++.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~-~~~s---~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI-TTRS---YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcC-CCCC---HHHHHHHHHHHHHcCCeEeEEEE
Confidence 35789999999999999999886222 444421 1113 66778999999999999877664
No 140
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=37.61 E-value=77 Score=35.82 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=41.8
Q ss_pred cccHHHHHHHHHcCCCeeEeccccccccc--cCC----CCCCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 98 HRYLEDIDLMESLGVNSYRFSISWARILP--KGR----FGDVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~WsRi~P--~~~----~g~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
....+-+..+++||++++=+|=-+.-.-. .|- -..+|++ +.+-+++++++++++||.+|+++.
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34677889999999999977654321100 000 0122222 355688999999999999999873
No 141
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=37.21 E-value=1e+02 Score=31.64 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHcCCCeeEecccccc---ccccCCCCCCChh----HHHHHHHHHHHHHHcCCeeEE
Q 016308 104 IDLMESLGVNSYRFSISWAR---ILPKGRFGDVNSE----GINHYNKLIDALLLKGIQPFV 157 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsR---i~P~~~~g~~n~~----~~~~y~~~i~~l~~~GI~piv 157 (392)
++++|++|++.+=+--.-.. +.|... ..+|.. .-+...++.++|+++||+.-+
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~-t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKY-SNWNAVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCC-CCCcccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 89999999997654322111 112211 111110 135788999999999999877
No 142
>PTZ00445 p36-lilke protein; Provisional
Probab=37.12 E-value=64 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHcCCCeeEeccccccccccCCCCCCChh---------HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSE---------GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~---------~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
++++++.|++++=+.++=+-|.-... |..++. +-.-...++.+|+++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999999888776653321 433332 334577899999999999888765
No 143
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=36.57 E-value=1.5e+02 Score=29.58 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=63.0
Q ss_pred cHHHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC-----chhHHhh-
Q 016308 100 YLEDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS-----PQEIEDK- 171 (392)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~-----P~~l~~~- 171 (392)
.++-++.+++.||. ++=+.+.|.. ....-.+|++-+---+.+|++|++.|++.++.++-+-. |..-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~ 102 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD---GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKD 102 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC---CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHH
Confidence 34445666666654 3333444421 11001234333333468999999999998888764422 2211100
Q ss_pred ------------h--------C---CCCChhhHHHHHHHHHHHHHHhC-CcceEEEEecccchh
Q 016308 172 ------------Y--------G---AWLSPESQEDFGYFADICFKSFG-DRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 ------------~--------g---gw~~~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~~ 211 (392)
+ . -+.|++..+.|.+..+.+....+ +-+-.|+=+|||.++
T Consensus 103 ~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f 166 (339)
T cd06603 103 KGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVF 166 (339)
T ss_pred CCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCcccc
Confidence 0 0 15678889999888887765433 234678999999864
No 144
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=36.38 E-value=2.2e+02 Score=27.86 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccc
Q 016308 138 INHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYR 217 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~ 217 (392)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|......-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45577899999999999887776 56662 234566666666555334668888888888876665566
Q ss_pred cCCCCC
Q 016308 218 LGCHPP 223 (392)
Q Consensus 218 ~g~~~P 223 (392)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666544
No 145
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=35.96 E-value=1.5e+02 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=40.5
Q ss_pred cHHHHHHHHHcCCCeeEecc-cc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P 165 (392)
-++.+++|+++|++.+-+++ += .++...- |+-. ..+-..+.|+.+++.|+..+ ++|. +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL--HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 36889999999999776666 23 2222221 2221 24557789999999999864 6665 5666
No 146
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.89 E-value=73 Score=34.56 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCeeEEeec
Q 016308 138 INHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
++-++++|++|.++||++|+++.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 45689999999999999999874
No 147
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.58 E-value=1.1e+02 Score=34.53 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=62.2
Q ss_pred cCCCeeEeccc-cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC---CCCchh--HHhh-------h----
Q 016308 110 LGVNSYRFSIS-WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ---FDSPQE--IEDK-------Y---- 172 (392)
Q Consensus 110 lG~~~~R~si~-WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H---~~~P~~--l~~~-------~---- 172 (392)
+=++++++.+. |.+ .-+. -.+|+.-+---+.+|+.|++.||+.++.+.. -|.|.. ..++ .
T Consensus 294 IP~d~~~lD~~~~~~--~~~~-F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD-FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccc-eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45779999995 876 1111 2345444444559999999999999987753 233322 1111 0
Q ss_pred --------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhh
Q 016308 173 --------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVT 213 (392)
Q Consensus 173 --------g---gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~ 213 (392)
+ -+.|++..+.|.+....-...+|- .-+|.=+|||.+...
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~ 421 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDG 421 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCccccc
Confidence 1 156888888888733333334433 468899999987543
No 148
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.57 E-value=98 Score=28.79 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=54.4
Q ss_pred HHHHHH----HHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCC
Q 016308 101 LEDIDL----MESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 101 ~eDi~l----~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~ 176 (392)
++|++. +++.|++.+|+.++=+........+.--++.++...++++.+++.|++..+++.+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455555 456999999999865554333211333355788899999999999999987775422
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 016308 177 SPESQEDFGYFADICFKS 194 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~ 194 (392)
+-..+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 22256777777777655
No 149
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=35.30 E-value=1.5e+02 Score=33.25 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec---CCCCc-----------
Q 016308 102 EDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT---QFDSP----------- 165 (392)
Q Consensus 102 eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H~~~P----------- 165 (392)
+=++.+.++|+. ..=..|.|-.-.-+ -.+|....-...++++.|.++|++.++.+. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD---FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~ 391 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD---FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKD 391 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc---eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhc
Confidence 336677777777 66666666433222 356776676788999999999999999886 22222
Q ss_pred hhHHhhh----------CC------CCChhhHHHHHHHHHHHHHHhCCcce---EEEEecccchhh
Q 016308 166 QEIEDKY----------GA------WLSPESQEDFGYFADICFKSFGDRVK---YWFTINEPNMQV 212 (392)
Q Consensus 166 ~~l~~~~----------gg------w~~~~~~~~f~~ya~~~~~~fgd~V~---~w~t~NEp~~~~ 212 (392)
.|+.+.+ .| ++|+++++ ++...+++|.+.|. +|+-+|||.-+.
T Consensus 392 v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 392 VLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eeeecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCC
Confidence 0111100 12 44554444 44455668888765 899999997544
No 150
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.19 E-value=1.6e+02 Score=29.53 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=59.2
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--CCCCchhHHhh------
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT--QFDSPQEIEDK------ 171 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--H~~~P~~l~~~------ 171 (392)
..+|++...+.|++.+|+....+.. +...+.|+.+++.|++..+.+. |...|..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES 154 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh
Confidence 3689999999999999988754322 2356899999999999888773 44444433321
Q ss_pred h----------CCCCChhhHHHHHHHHHHHHHHhCCcce-EEEEecccc
Q 016308 172 Y----------GAWLSPESQEDFGYFADICFKSFGDRVK-YWFTINEPN 209 (392)
Q Consensus 172 ~----------ggw~~~~~~~~f~~ya~~~~~~fgd~V~-~w~t~NEp~ 209 (392)
+ .|-. +++...++++.+-+++++.++ .+..-|-..
T Consensus 155 ~Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 200 (333)
T TIGR03217 155 YGADCVYIVDSAGAM---LPDDVRDRVRALKAVLKPETQVGFHAHHNLS 200 (333)
T ss_pred cCCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCCceEEEEeCCCCc
Confidence 1 2222 345666666666677764332 333455444
No 151
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=34.90 E-value=86 Score=35.68 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHcCCCeeEeccc---------------cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 98 HRYLEDIDLMESLGVNSYRFSIS---------------WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~---------------WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
....+-+..+++||++++=+|=- +.+|.|.- | +.+-+++++++++++||.+|+++-
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL--G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44678889999999999866643 33444432 2 345688999999999999999873
No 152
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=34.52 E-value=30 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 016308 122 ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF 162 (392)
Q Consensus 122 sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 162 (392)
+++.|+. +.=-.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~--~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE--GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc--ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5777875 55567889999999999999999 88888753
No 153
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=34.25 E-value=1.6e+02 Score=30.56 Aligned_cols=88 Identities=16% Similarity=0.272 Sum_probs=57.2
Q ss_pred cHHHHHHHHHcCCCeeEecc--ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchh--HHhhhCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI--SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQE--IEDKYGA 174 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si--~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~--l~~~~gg 174 (392)
-.+|+..+.++.--..|+++ .|. . +|.+.++ +.++++||..- +...-|..|+. -.=++|.
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd--------~-vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWD--------K-ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCC--------c-CCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 36888888888877777775 782 1 3644443 89999999988 66665766732 1112355
Q ss_pred CCC--hhhHHHHHHHHHHH---HHHhCCc-ceEE
Q 016308 175 WLS--PESQEDFGYFADIC---FKSFGDR-VKYW 202 (392)
Q Consensus 175 w~~--~~~~~~f~~ya~~~---~~~fgd~-V~~w 202 (392)
..| +++.+...+-++.| .++.|.. |..|
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW 170 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSKALTVW 170 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence 666 45667777777666 5577775 4444
No 154
>PRK14706 glycogen branching enzyme; Provisional
Probab=33.83 E-value=2.1e+02 Score=31.40 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHcCCCeeEeccccccccccC-CCC-------CCChh--HHHHHHHHHHHHHHcCCeeEEeec--CCC---------
Q 016308 105 DLMESLGVNSYRFSISWARILPKG-RFG-------DVNSE--GINHYNKLIDALLLKGIQPFVTLT--QFD--------- 163 (392)
Q Consensus 105 ~l~k~lG~~~~R~si~WsRi~P~~-~~g-------~~n~~--~~~~y~~~i~~l~~~GI~pivtL~--H~~--------- 163 (392)
+.+|+||++++-+.=-=. .|.. ..| .++.. ..+=++.+|++|.++||++|+++. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 678999999987652100 0110 001 01111 134578999999999999999864 432
Q ss_pred --Cchh-HHhhhCC----C-------CChhhHHHHHHHHHHHHHHhCC
Q 016308 164 --SPQE-IEDKYGA----W-------LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 164 --~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~fgd 197 (392)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+=
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~i 300 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHV 300 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1211 0000011 2 2567778888888888887753
No 155
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.28 E-value=77 Score=32.63 Aligned_cols=51 Identities=22% Similarity=0.478 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCeeEecc--------------ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 102 EDIDLMESLGVNSYRFSI--------------SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 102 eDi~l~k~lG~~~~R~si--------------~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
+-++.+++||++++=++= .+.+|.|. .-.++-.+++|+++.++||++++++
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~-------~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH-------FGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc-------cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 567899999999985542 12222222 1236678899999999999999988
No 156
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.20 E-value=1.8e+02 Score=29.92 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=66.4
Q ss_pred cHHHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCc---hhHHhh
Q 016308 100 YLEDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSP---QEIEDK 171 (392)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P---~~l~~~ 171 (392)
..+-++.+++.|+- ++=+.+.|..-.. . -.+|++.+.-.+++++.|+++|++.++.++-+ +.+ ..-+-+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~-f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--D-FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--T-T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--c-cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 45667888887775 4445556655322 1 35666666567899999999999988766522 222 111100
Q ss_pred --------hCC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 --------YGA----------------WLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 --------~gg----------------w~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
..| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 012 67788888888888887777654 3578899999864
No 157
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.60 E-value=1.8e+02 Score=29.38 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=60.4
Q ss_pred CccccccHHHHHHHHHcCCCeeEeccccccccccC---CCC--CCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhH
Q 016308 94 VDHYHRYLEDIDLMESLGVNSYRFSISWARILPKG---RFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEI 168 (392)
Q Consensus 94 ~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~---~~g--~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l 168 (392)
++.+-+-++=++.+.++|++-+-+||+ -+-|+. -.| -+| +++-.++.+.+.+.||..+++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 455666778899999999997777773 333431 014 355 788889999999999999987 8887
Q ss_pred HhhhCCCCChhhHHHHHHHHHHHH
Q 016308 169 EDKYGAWLSPESQEDFGYFADICF 192 (392)
Q Consensus 169 ~~~~ggw~~~~~~~~f~~ya~~~~ 192 (392)
- |. |.+-...+.+||+.+-
T Consensus 266 P----G~-ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 P----GV-NDDEMPKIIEWAREIG 284 (414)
T ss_pred C----Cc-ChHHHHHHHHHHHHhC
Confidence 3 43 5566778888887763
No 158
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.54 E-value=7.5e+02 Score=27.65 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=115.1
Q ss_pred HHHHHcCCCeeEec---c-ccccccccCCCCCCChhHHHHHHHHHHHHHHc-CCeeEEeecCCCC-----chhHHh----
Q 016308 105 DLMESLGVNSYRFS---I-SWARILPKGRFGDVNSEGINHYNKLIDALLLK-GIQPFVTLTQFDS-----PQEIED---- 170 (392)
Q Consensus 105 ~l~k~lG~~~~R~s---i-~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~-GI~pivtL~H~~~-----P~~l~~---- 170 (392)
...++-|+..+=.. + .-.|+.|... |-++.+-++-++++++.++++ |-+.++=|.|-+. +.|...
T Consensus 438 ~~rA~gG~glii~e~~~v~~~g~~~~~~~-~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~ 516 (765)
T PRK08255 438 GARALGGAGLVMTEMTCVSPEGRITPGCP-GLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPL 516 (765)
T ss_pred HHHHcCCCcEEEECCeEECCCcCCCCCCC-ccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCccccccccccccccccc
Confidence 33555566655332 1 2345555433 778999999999999999999 6899999998432 112100
Q ss_pred hhCCCC--------------C---------hhhHHHHHHHHHHHHHHhC-CcceEEEEecccchhhhcccccCCC-CCCC
Q 016308 171 KYGAWL--------------S---------PESQEDFGYFADICFKSFG-DRVKYWFTINEPNMQVTLSYRLGCH-PPAH 225 (392)
Q Consensus 171 ~~ggw~--------------~---------~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~ 225 (392)
..++|. . .++++.|++=|+++.+ -| |-|. +..-.||+...| -|-.
T Consensus 517 ~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~ 586 (765)
T PRK08255 517 EEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLT 586 (765)
T ss_pred ccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCC
Confidence 002221 0 2467888887776554 34 3332 235567776544 2321
Q ss_pred --CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcccccCCCCHHHH-HHHHHHHhhhc
Q 016308 226 --CSQPFGNCSQGNSEEEPFIAAHNLILSHATAVDIYRTKYQKDQGGSIGIILNTLWFEPISSSTADK-LAAERAQSFYM 302 (392)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~hnlllAHA~Av~~~re~~~~~~~~kVGi~~~~~~~yP~s~~p~D~-~Aa~~~~~~~~ 302 (392)
..+ ..|. .+-|-+.--.++++.+|+.. .++..||+-++..-+.+..-+++|. ..++...+. .
T Consensus 587 N~RtD-----~yGG-------slenR~r~~~eiv~~ir~~~--~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~-g 651 (765)
T PRK08255 587 NQRTD-----EYGG-------SLENRLRYPLEVFRAVRAVW--PAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAA-G 651 (765)
T ss_pred CCCCC-----CCCC-------CHHHHhHHHHHHHHHHHHhc--CCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhc-C
Confidence 111 0111 12344444456788888764 2456799888865444443445554 334443321 1
Q ss_pred ccccccccccc------------cCHHHHHHhhcc--CC------CCCHhHHHHh--cCCccEEeec
Q 016308 303 NWFLDPIIYGK------------YPAEMMNIVGST--LP------KFSSRDKEKL--KQGLDFIGIN 347 (392)
Q Consensus 303 ~~flD~~~~G~------------YP~~~~~~l~~~--lp------~~t~~D~~~i--kg~~DFiGvN 347 (392)
--++++-. |. |...+.+.+++. .| ..+.++.+.+ .+.+|++++.
T Consensus 652 ~d~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 652 ADLIDVSS-GQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALA 717 (765)
T ss_pred CcEEEeCC-CCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEc
Confidence 23444421 22 212222333331 22 2356666655 4789999984
No 159
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=32.38 E-value=1.4e+02 Score=28.12 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016308 138 INHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (392)
.+...+.|..++++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4556789999999999999999654432111 012344555666666666666665
No 160
>PRK12568 glycogen branching enzyme; Provisional
Probab=32.33 E-value=85 Score=35.01 Aligned_cols=59 Identities=22% Similarity=0.423 Sum_probs=38.5
Q ss_pred ccccHHH-HHHHHHcCCCeeEecc--------cccc-----ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLED-IDLMESLGVNSYRFSI--------SWAR-----ILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eD-i~l~k~lG~~~~R~si--------~WsR-----i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
|.-..+. |..+|+||++++-+.= +|-= ..|++.-|. .+-++.+|++|.++||.+|+++.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 3334444 6899999999986542 2310 011111022 44588999999999999999874
No 161
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.19 E-value=1.6e+02 Score=31.00 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCeeEeccc--cccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYRFSIS--WARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~--WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
-++-+++|+++|++.+-++++ =.++...-+ ...+ .+-..+.|+.++++||.+.+.+. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 355689999999998888773 222322211 1234 44577999999999999887765 4555
No 162
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.13 E-value=42 Score=29.80 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=41.3
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVT 158 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 158 (392)
.....++-+++++.+|++.+++...+-...+......--....+.++.+.+.+.++|+++.+=
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 356678889999999999999997641111111000111234567888888899999886654
No 163
>PLN02960 alpha-amylase
Probab=32.08 E-value=75 Score=36.13 Aligned_cols=96 Identities=9% Similarity=0.143 Sum_probs=58.3
Q ss_pred ccccccHHH-HHHHHHcCCCeeEeccc--------cc-------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 016308 95 DHYHRYLED-IDLMESLGVNSYRFSIS--------WA-------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVT 158 (392)
Q Consensus 95 d~y~~y~eD-i~l~k~lG~~~~R~si~--------Ws-------Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 158 (392)
..|.-..+. +..+|+||++++-+.=- |- .+.|.- |. .+=++.+|++|.++||.+|++
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y--Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF--GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc--CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 345555544 89999999999886521 11 111110 22 344789999999999999999
Q ss_pred ec--CCCC--c--h---------hHHh--h--hCCC-------CChhhHHHHHHHHHHHHHHhCC
Q 016308 159 LT--QFDS--P--Q---------EIED--K--YGAW-------LSPESQEDFGYFADICFKSFGD 197 (392)
Q Consensus 159 L~--H~~~--P--~---------~l~~--~--~ggw-------~~~~~~~~f~~ya~~~~~~fgd 197 (392)
+. |+.. + . ++.. + ...| .++++.+.+.+-++.-+++|+=
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhI 550 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRV 550 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 73 4321 1 0 1100 0 0113 2456777888888888887753
No 164
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=32.00 E-value=1.5e+02 Score=29.17 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCe-e-EEe---------------ecCCCCchhHHhhhCCCCCh-h-hHHHHHHHHHHHHHHhCCc
Q 016308 138 INHYNKLIDALLLKGIQ-P-FVT---------------LTQFDSPQEIEDKYGAWLSP-E-SQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~-p-ivt---------------L~H~~~P~~l~~~~ggw~~~-~-~~~~f~~ya~~~~~~fgd~ 198 (392)
.+.|.++++.+++.||+ | ++. +.+-.+|.|+.++....... + ..+.=.+||....+++.+.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 34567899999999965 2 222 35678999998886666432 1 1222334444444443232
Q ss_pred -c--eEEEEecccchhh
Q 016308 199 -V--KYWFTINEPNMQV 212 (392)
Q Consensus 199 -V--~~w~t~NEp~~~~ 212 (392)
| -|..|+|-+....
T Consensus 268 gv~GvH~yt~n~~~~~~ 284 (296)
T PRK09432 268 GVKDFHFYTLNRAELTY 284 (296)
T ss_pred CCCEEEEecCCChHHHH
Confidence 2 3555799887654
No 165
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.87 E-value=1.9e+02 Score=31.54 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=57.2
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchh----HHhh----
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQE----IEDK---- 171 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~----l~~~---- 171 (392)
.++|++..++.|++.+|+..+-+.+ +-....++.++++|....+++..-..|.+ +.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 4567889999999999998765443 22446667777777777666643223421 1100
Q ss_pred ------------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 ------------YGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 ------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
-.|-.. +....+.++.+-++++ ..-...+-|-..+-
T Consensus 164 ~~~Gad~I~i~Dt~G~~~---P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLT---PYAAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HHcCCCEEEECCcCCCcC---HHHHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 034444 4455666777777775 33456677777653
No 166
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.61 E-value=1.8e+02 Score=31.01 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee----cCCCCchhHHhh-----
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL----TQFDSPQEIEDK----- 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL----~H~~~P~~l~~~----- 171 (392)
+.|++..++.|++.+|+....+.+ +-.+..|+.+++.|.....++ .+-..|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 457899999999999999866544 223345555555555442222 112222221110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhC-CcceEEEEecccchh
Q 016308 172 -----------YGAWLSPESQEDFGYFADICFKSFG-DRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 -----------~ggw~~~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~~ 211 (392)
-.|...| ....+.++.+-++++ +..-...+-|-..+-
T Consensus 166 ~~Gad~I~IkDtaGll~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 166 DMGADSICIKDMAALLKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HcCCCEEEeCCCccCCCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 1344444 456666777778886 433456677777653
No 167
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=31.59 E-value=1.5e+02 Score=36.20 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHcCCCeeEeccccc---------------cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWA---------------RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~Ws---------------Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
+.-..+-+..+++||++++=+|=-+. +|.|+- | +.+=+++++++++++||.+|+++.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l--G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI--G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34466778999999999997664443 333332 2 345588999999999999999874
No 168
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.60 E-value=1.8e+02 Score=28.63 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=43.3
Q ss_pred cHHHHHHHHHcCCCeeEecc----ccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhH
Q 016308 100 YLEDIDLMESLGVNSYRFSI----SWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEI 168 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si----~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l 168 (392)
.++=|++|+.+|+|.+-+=+ .++. .|+- ..|.+.++- ++++++.++++||++|..+ ++|..+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 67779999999999887644 2321 2221 126676544 7799999999999999875 455543
No 169
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.27 E-value=64 Score=30.59 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=40.2
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVT 158 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 158 (392)
...+++.-+++.+.+|.+.+++........+.. ...-+...+.++++.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP--NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 455677778999999999999864322111111 1111334677888899999999976654
No 170
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=30.12 E-value=1.5e+02 Score=29.04 Aligned_cols=62 Identities=18% Similarity=0.388 Sum_probs=43.6
Q ss_pred cHHHHHHHHHcCCCeeEeccc----ccc---ccccC-----------CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 016308 100 YLEDIDLMESLGVNSYRFSIS----WAR---ILPKG-----------RFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ 161 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~----WsR---i~P~~-----------~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 161 (392)
.++-|+.|+..++|.+.+-++ |+- ..|+- ..|.+.++ =++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 566799999999999887776 522 12221 11345544 47799999999999999775
Q ss_pred CCCchh
Q 016308 162 FDSPQE 167 (392)
Q Consensus 162 ~~~P~~ 167 (392)
|+|..
T Consensus 93 -D~PGH 97 (303)
T cd02742 93 -DMPGH 97 (303)
T ss_pred -cchHH
Confidence 56654
No 171
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=29.60 E-value=5.4e+02 Score=25.08 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHcCCCeeEeccc-cccccccC-----CCCCC-ChhHHHHHHHHHHHHHHcC---CeeEEeecCCCCchhH
Q 016308 99 RYLEDIDLMESLGVNSYRFSIS-WARILPKG-----RFGDV-NSEGINHYNKLIDALLLKG---IQPFVTLTQFDSPQEI 168 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~-WsRi~P~~-----~~g~~-n~~~~~~y~~~i~~l~~~G---I~pivtL~H~~~P~~l 168 (392)
.=.+.|+-.-++|.|++=+.|. |+.=.|.- ...-. +....+..+++++.+++.- -.--++|. ||
T Consensus 8 n~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv------~l 81 (265)
T cd08576 8 NDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFV------WL 81 (265)
T ss_pred ccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEE------EE
Confidence 3457788888999999999994 53323321 00112 3345677778888877652 11222332 33
Q ss_pred HhhhCCCCChhhHHHHHHHHHHHHHHhCCc---ceEEEEecccch
Q 016308 169 EDKYGAWLSPESQEDFGYFADICFKSFGDR---VKYWFTINEPNM 210 (392)
Q Consensus 169 ~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~---V~~w~t~NEp~~ 210 (392)
.-|.+++......+...+.|+.+.++|+.. ++-.+++..|.+
T Consensus 82 DlK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 82 DLKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred EcCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 334466777788999999999999999965 788888888864
No 172
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=28.94 E-value=1.7e+02 Score=28.18 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=33.4
Q ss_pred ccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHH
Q 016308 95 DHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDAL 148 (392)
Q Consensus 95 d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l 148 (392)
+-....++||+.++++|++-+=|++-= ++ |.+|.+. ..++|+.+
T Consensus 70 ~E~~~M~~di~~~~~~GadGvV~G~L~------~d-g~vD~~~---~~~Li~~a 113 (248)
T PRK11572 70 GEFAAMLEDIATVRELGFPGLVTGVLD------VD-GHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeEC------CC-CCcCHHH---HHHHHHHh
Confidence 345678899999999999999998742 23 8899654 55777766
No 173
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.46 E-value=3e+02 Score=27.83 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=57.1
Q ss_pred cHHHHHHHHHcCCCeeEecc-ccc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~ 176 (392)
-++.++.|+++|++.+-++| +=+ ++...- |+.. ..+-..+.|+.+++.|++++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 35899999999999666666 222 222221 2221 24456678999999999875 6665 66663
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 177 SPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
++.+.+.+-.+.+.+-==+.+..+...=||+
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~g 201 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPN 201 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccC
Confidence 2345555555555543335666666555665
No 174
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=28.29 E-value=96 Score=25.87 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCeeEeccc-cccc-cccCCCCCCChhHHHHHHHHHHHHHHcCCeeE
Q 016308 101 LEDIDLMESLGVNSYRFSIS-WARI-LPKGRFGDVNSEGINHYNKLIDALLLKGIQPF 156 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~-WsRi-~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi 156 (392)
++.++.+++.|++.+++|++ -..- ..+.. + ....++..-+.++.|+++|+.++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~-~--~~~~~~~~~~~l~~l~~~g~~~~ 144 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII-N--RGKSFERVLEALERLKEAGIPRV 144 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH-S--STSHHHHHHHHHHHHHHTTSETE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh-c--CCCCHHHHHHHHHHHHHcCCCcE
Confidence 89999999999999999984 3322 11110 1 11236677799999999999963
No 175
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=28.14 E-value=3.2e+02 Score=27.97 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=56.3
Q ss_pred HHHHHHHHHc-CCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCCCh
Q 016308 101 LEDIDLMESL-GVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 101 ~eDi~l~k~l-G~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~~~ 178 (392)
.+|++.+.++ ++. .++++- .|.+ ...| +.++.+.++++||+.. ++.-.|..|.+ ++|.+.|+
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~d--~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~p 106 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPWD--RVED------YEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTHP 106 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCCc--cccC------HHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCCC
Confidence 6778888877 555 666651 2212 1123 6688888999999987 77766655644 34667664
Q ss_pred --hhHHHHHHHHHHH---HHHhCCc-ceEE
Q 016308 179 --ESQEDFGYFADIC---FKSFGDR-VKYW 202 (392)
Q Consensus 179 --~~~~~f~~ya~~~---~~~fgd~-V~~w 202 (392)
++.+...++.+.| ++.+|.. |..|
T Consensus 107 D~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 107 DKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 5667777777766 5688874 4555
No 176
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.80 E-value=1.7e+02 Score=28.48 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=53.6
Q ss_pred HHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCC----chhHHhhhCCCCChh
Q 016308 104 IDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDS----PQEIEDKYGAWLSPE 179 (392)
Q Consensus 104 i~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~----P~~l~~~~ggw~~~~ 179 (392)
.+.+++.+=+.--++..|-+|-|++ .+... ...++++.++++|+++++.+..++- +.-+.. --.++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHH
Confidence 5677777777777888999998864 33321 2358999999999999999976541 111110 122455
Q ss_pred hHHHHHHHHHHHHHHhC
Q 016308 180 SQEDFGYFADICFKSFG 196 (392)
Q Consensus 180 ~~~~f~~ya~~~~~~fg 196 (392)
..+.|++=+-.++++||
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 55666665555566654
No 177
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.71 E-value=2.6e+02 Score=29.08 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=39.4
Q ss_pred cHHHHHHHHHcCCCeeEeccc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHcCC-eeEEeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGDVNSEGINHYNKLIDALLLKGI-QPFVTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI-~pivtL~H~~~P 165 (392)
-+|.+++|+++|++.+.+++. =+ ++.-.-. ..-+ .+-..+.|+.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l~-r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAVN-RIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC-CCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 468899999999997777762 22 1211111 1122 4456789999999999 4556664 5666
No 178
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.54 E-value=97 Score=32.79 Aligned_cols=108 Identities=9% Similarity=-0.033 Sum_probs=71.2
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC--CchhHHhh------
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFD--SPQEIEDK------ 171 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~--~P~~l~~~------ 171 (392)
-++|++.+.+.|++.+++.++-|.+.-+..-+.--++.++...+.++.+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999977666433211333456788899999999999999888876432 12222211
Q ss_pred h----------CCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 Y----------GAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 ~----------ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
. -|... +..+.++.+.+.++++- .--+..-|-..+-
T Consensus 155 ~Ga~~i~l~DTvG~~~---P~~~~~lv~~l~~~~~v-~l~~H~HND~GlA 200 (488)
T PRK09389 155 AGADRICFCDTVGILT---PEKTYELFKRLSELVKG-PVSIHCHNDFGLA 200 (488)
T ss_pred CCCCEEEEecCCCCcC---HHHHHHHHHHHHhhcCC-eEEEEecCCccHH
Confidence 0 23333 45666667776666642 2345678877754
No 179
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.27 E-value=1e+02 Score=29.36 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=40.0
Q ss_pred cccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 96 HYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 96 ~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
.-.+++.-+++++++|.+.+++.- .+..+.....+.-...++.++++++.++++||.+.+=.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 344577789999999999999852 11111110001112345677788899999999887754
No 180
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.16 E-value=1.1e+02 Score=29.83 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhh
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKY 172 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ 172 (392)
++=+++++++|++.+.+..- +.=+++.+++|+++++.+.+++| +|.+|--..|.=+...|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHcCCCEEeeCcC----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 56689999999999998752 22468889999999999999987 56666555565444433
No 181
>PRK06256 biotin synthase; Validated
Probab=26.64 E-value=1.1e+02 Score=30.17 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHcCCCeeEecc-ccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 99 RYLEDIDLMESLGVNSYRFSI-SWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si-~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
.-+|.++.|+++|++.+-+++ +=.++.+.-. ..-+ ++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~-~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVV-TTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcC-CCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 567889999999999988876 3223333321 1122 5567789999999999865544
No 182
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.22 E-value=2.3e+02 Score=27.53 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=50.1
Q ss_pred cCccccccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhH
Q 016308 93 AVDHYHRYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEI 168 (392)
Q Consensus 93 a~d~y~~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l 168 (392)
+++..+...+-.+.+|++|+..+|-+..=+|--|.+..| +-.++ ++.+-+.+++.||..+-+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~g~~g---l~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-LGEEG---LKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-cHHHH---HHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 345566677778999999999999997557777654212 22444 5566666799999999888754444333
No 183
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=26.11 E-value=3.3e+02 Score=26.66 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=39.7
Q ss_pred cHHHHHHHHHcCCCeeE-eccc-c-----ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYR-FSIS-W-----ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R-~si~-W-----sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
.+|.++.||++|++.+- .+.+ . .++.|+ ... .+-+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2321 1 122233 233 44567999999999999987765 4444
No 184
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=25.81 E-value=1.9e+02 Score=27.26 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=43.3
Q ss_pred eccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016308 117 FSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFG 196 (392)
Q Consensus 117 ~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 196 (392)
+.+.|..+.++|. -.... .......+++.++++|+++++.+..+....... -..++...+.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~-l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGT-LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCe-EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3445666655542 11211 123467889999999999999987654332111 12355666667666655566654
No 185
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.81 E-value=6.8e+02 Score=24.98 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=100.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc---hhH------------Hhhh------C--CCCC---------h
Q 016308 131 GDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP---QEI------------EDKY------G--AWLS---------P 178 (392)
Q Consensus 131 g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P---~~l------------~~~~------g--gw~~---------~ 178 (392)
+-++.+.+..++++.+.++++|-..++=|.|.+.- .+. .... + ++.. .
T Consensus 69 ~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~ 148 (338)
T cd02933 69 GIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIP 148 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHH
Confidence 56788889999999999999999999999995421 100 0000 0 1111 3
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCC-CCC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 016308 179 ESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCH-PPA--HCSQPFGNCSQGNSEEEPFIAAHNLILSHAT 255 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~-~Pg--~~~~~~~~~~~~~~~~~~~~~~hnlllAHA~ 255 (392)
++++.|++=|+++.+.==|-|. +.+-.||+...| -|- ...+ . .|.+ +-|-+.--.+
T Consensus 149 ~ii~~f~~aA~~a~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D----~-yGGs-------lenR~rf~~e 207 (338)
T cd02933 149 GIVADFRQAARNAIEAGFDGVE---------IHGANGYLIDQFLRDGSNKRTD----E-YGGS-------IENRARFLLE 207 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE---------EccccchhHHHhcCCccCCCCC----c-CCCc-------HHHhhhHHHH
Confidence 5688888877666554223333 234557776544 231 1111 0 1111 2233344446
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCcccccC---CCCHHHH-HHHHHHHhhhccccccccccccc-------CHHHHHHhhc
Q 016308 256 AVDIYRTKYQKDQGGSIGIILNTLWFEPI---SSSTADK-LAAERAQSFYMNWFLDPIIYGKY-------PAEMMNIVGS 324 (392)
Q Consensus 256 Av~~~re~~~~~~~~kVGi~~~~~~~yP~---s~~p~D~-~Aa~~~~~~~~~~flD~~~~G~Y-------P~~~~~~l~~ 324 (392)
+++.+|+... .+ .||+-++...+.+. ..+.+|. ..++...+. .--++++ ..|.+ ...+.+.+++
T Consensus 208 ii~air~~vg--~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~-g~d~i~v-s~g~~~~~~~~~~~~~~~~ik~ 282 (338)
T cd02933 208 VVDAVAEAIG--AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKR-GLAYLHL-VEPRVAGNPEDQPPDFLDFLRK 282 (338)
T ss_pred HHHHHHHHhC--CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHc-CCcEEEE-ecCCCCCcccccchHHHHHHHH
Confidence 6777776532 23 58988876544332 2344554 333333221 1123333 12322 2233333333
Q ss_pred c--CC-----CCCHhHHHHh-c-CCccEEeec
Q 016308 325 T--LP-----KFSSRDKEKL-K-QGLDFIGIN 347 (392)
Q Consensus 325 ~--lp-----~~t~~D~~~i-k-g~~DFiGvN 347 (392)
. .| .+++++.+.+ + +.+|++++.
T Consensus 283 ~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 283 AFKGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred HcCCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 2 22 2456666655 3 789999984
No 186
>PRK12677 xylose isomerase; Provisional
Probab=25.32 E-value=6.2e+02 Score=25.85 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=53.1
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchhHHhhhCCCCCh
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPF-VTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~~l~~~~ggw~~~ 178 (392)
.+|-++.++++|++.+=+.. ..+.|-. ....+--+..+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 57889999999999886632 2244432 1111111246788888999999966 45544555543 23677764
Q ss_pred h--hHHHHHHHHHHH---HHHhCCc
Q 016308 179 E--SQEDFGYFADIC---FKSFGDR 198 (392)
Q Consensus 179 ~--~~~~f~~ya~~~---~~~fgd~ 198 (392)
+ ..+.-.++.+.+ ++.+|-.
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa~ 129 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGAK 129 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 223324444433 5567664
No 187
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=25.30 E-value=1.4e+02 Score=31.15 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=38.6
Q ss_pred cHHHHHHHHHcCCCeeEeccc-cc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYRFSIS-WA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~-Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P 165 (392)
-++.+++|+++|++.+-+++. =+ ++...-. ...+ .+.+.+.++.+++.|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~-r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN-RIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC-CCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 368899999999996666652 21 2222111 1123 45677999999999997 445553 4555
No 188
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=24.58 E-value=92 Score=34.53 Aligned_cols=65 Identities=23% Similarity=0.477 Sum_probs=44.0
Q ss_pred ccccHHH-HHHHHHcCCCeeEec-c-cc-cccc-----------ccCCCCCCC-hhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLED-IDLMESLGVNSYRFS-I-SW-ARIL-----------PKGRFGDVN-SEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eD-i~l~k~lG~~~~R~s-i-~W-sRi~-----------P~~~~g~~n-~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
|.-+.|+ +.-+|++|.|++.+= | +- +... |...-|..+ +.-+.-++.||+++.+.||++++++-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 999999999998742 1 22 2221 221112222 11255688999999999999999886
Q ss_pred C
Q 016308 161 Q 161 (392)
Q Consensus 161 H 161 (392)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 189
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.92 E-value=6.7e+02 Score=25.89 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCCee-EEeecCCCCchhHHhhhCCCCC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGIQP-FVTLTQFDSPQEIEDKYGAWLS 177 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~p-ivtL~H~~~P~~l~~~~ggw~~ 177 (392)
.|=++.+++.|+| |+|+-=--+-++- .-|+... -+--...++.+++.|+.- -++|. |++|.
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLI-yglP~----------- 200 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLI-YGLPG----------- 200 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 4568999999999 8887322222210 0144322 123457888999999984 45666 56662
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccC
Q 016308 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLG 219 (392)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g 219 (392)
++.+.|.+=.+.+++-=-|+|..+-..-||+.....-...|
T Consensus 201 -QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~ 241 (416)
T COG0635 201 -QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKG 241 (416)
T ss_pred -CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccC
Confidence 23555666666666555678999989999987655444333
No 190
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.79 E-value=6e+02 Score=24.65 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCC--CeeEecccccccc--c---cCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC-CC-c---hh
Q 016308 101 LEDIDLMESLGV--NSYRFSISWARIL--P---KGR-FGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF-DS-P---QE 167 (392)
Q Consensus 101 ~eDi~l~k~lG~--~~~R~si~WsRi~--P---~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~-~~-P---~~ 167 (392)
++=++.+++.|| +++=+.|.|..-. + ++- .-.+|.+-+--..++|++|++.|++.++.++-. .. + ..
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 444566666555 4666666775421 0 110 023555544456799999999999988877532 11 1 11
Q ss_pred --HHhhhC-----------CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 168 --IEDKYG-----------AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 168 --l~~~~g-----------gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
+....+ -+.+++..+.|.+-....+...|- .-.|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gi-dg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGV-DFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCC-cEEEecCCCCccc
Confidence 111111 145566555443333333333332 3477889998753
No 191
>PRK01060 endonuclease IV; Provisional
Probab=23.69 E-value=3.8e+02 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=36.3
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCee
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQP 155 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p 155 (392)
+++-++.++++|++.+-+.+.-++.... +.++.+- .+++-+.+.++||++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~---~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR---KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC---CCCCHHH---HHHHHHHHHHcCCCC
Confidence 7788999999999999998765554332 3455443 445666778999985
No 192
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=23.45 E-value=2.4e+02 Score=24.10 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=39.5
Q ss_pred cHHHHHHHHHcCCCeeEeccccc-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLEDIDLMESLGVNSYRFSISWA-RILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~Ws-Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
-+++++.|+++|+..+.+|++-. ...-... . -....++.+-+.|+.++++|+...+.+.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKI-R-GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHH-h-cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 47899999999999999999532 2211110 0 0111255677888889998888776663
No 193
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.19 E-value=2.4e+02 Score=31.32 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 016308 140 HYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFK 193 (392)
Q Consensus 140 ~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 193 (392)
.+..+|+.|+++|+..=+...|-.++.-+.++||. ...-.++.-.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999988864 444566666666666543
No 194
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.06 E-value=3.4e+02 Score=29.63 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=51.3
Q ss_pred cccccHH-----HHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch----
Q 016308 96 HYHRYLE-----DIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQ---- 166 (392)
Q Consensus 96 ~y~~y~e-----Di~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~---- 166 (392)
.|..|.+ .++++++.|++.+|+.-+... ++-....|+..++.|.....+++--..|.
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e 154 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLD 154 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHH
Confidence 3555554 689999999999998653321 12233345555555555444432111111
Q ss_pred hHH-----------------hhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 167 EIE-----------------DKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 167 ~l~-----------------~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
.+. |- .|...|. ...+.++.+-++++ ..-...+-|-..+-
T Consensus 155 ~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~---~v~~lv~alk~~~~-ipi~~H~Hnt~Gla 211 (596)
T PRK14042 155 NFLELGKKLAEMGCDSIAIKDM-AGLLTPT---VTVELYAGLKQATG-LPVHLHSHSTSGLA 211 (596)
T ss_pred HHHHHHHHHHHcCCCEEEeCCc-ccCCCHH---HHHHHHHHHHhhcC-CEEEEEeCCCCCcH
Confidence 100 11 3555544 45556666666774 33455677776653
No 195
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.05 E-value=5.3e+02 Score=25.89 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCeeEecc-cc-ccccccCCCCC-CChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHhhhCCCC
Q 016308 101 LEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGD-VNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKYGAWL 176 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~~g~-~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~~~ggw~ 176 (392)
+|.+++|+++|++.+-+++ += .++...- |+ .+ .+-+.+.++.++++|+. +-++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg---------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI---------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC----------
Confidence 6889999999999666555 22 1222221 22 33 44577899999999997 556665 56662
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CcceEEEEecccch
Q 016308 177 SPESQEDFGYFADICFKSFG-DRVKYWFTINEPNM 210 (392)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~fg-d~V~~w~t~NEp~~ 210 (392)
++.+.|.+=.+.+.+ ++ +.|..+...=||+.
T Consensus 167 --qt~e~~~~tl~~~~~-l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 --LKLKDLDEVFNFILK-HKINHISFYSLEIKEGS 198 (353)
T ss_pred --CCHHHHHHHHHHHHh-cCCCEEEEEeeEecCCC
Confidence 234455555555433 33 45655555556664
No 196
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.78 E-value=92 Score=32.97 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccC--CCCCCChhHHHHHHHHHHHHHHcCC-eeEEeecCCCCchhHHhhhCCCCC
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKG--RFGDVNSEGINHYNKLIDALLLKGI-QPFVTLTQFDSPQEIEDKYGAWLS 177 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI-~pivtL~H~~~P~~l~~~~ggw~~ 177 (392)
+|-++.|+++|++ |+||.-.-.-++- .-|+- -..+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 6779999999999 5555433332210 00331 124567789999999999 5556765 56662
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
++.+.+.+-.+.+.+-=-+.+......=+|.
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 2244555555554332223455444433443
No 197
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=22.52 E-value=5.8e+02 Score=26.00 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCeeEecc-cc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh
Q 016308 101 LEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~ 178 (392)
++.++.|+++|+|.+-+++ +- .++...- |+... .+-..+.++.+++.+..+-++|. +++|.
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l--gR~h~--~~~~~~ai~~~~~~~~~v~~DlI-~GlPg------------ 173 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL--GRTHD--CMQAIKTIEAANTIFPRVSFDLI-YARSG------------ 173 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc--CCCCC--HHHHHHHHHHHHHhCCcEEEEee-cCCCC------------
Confidence 5899999999999777766 33 2333322 43321 33455677888888888888887 67773
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEEecccchhh
Q 016308 179 ESQEDFGYFADICFKSFGDRVKYWFTINEPNMQV 212 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~ 212 (392)
++.+.+.+=++.+.+-=-+.|..+...=||+...
T Consensus 174 qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l 207 (390)
T PRK06582 174 QTLKDWQEELKQAMQLATSHISLYQLTIEKGTPF 207 (390)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCEEccCChH
Confidence 1234455555554443235677776666776443
No 198
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.18 E-value=3.3e+02 Score=26.51 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCe-eEE----------------eecCCCCchhHHhhhCCCCC--hhhHHHHHHHHHHHHHHhCCc
Q 016308 138 INHYNKLIDALLLKGIQ-PFV----------------TLTQFDSPQEIEDKYGAWLS--PESQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 138 ~~~y~~~i~~l~~~GI~-piv----------------tL~H~~~P~~l~~~~ggw~~--~~~~~~f~~ya~~~~~~fgd~ 198 (392)
.+.|.++++.|+++||+ ||+ .+..-++|.|+.++.....+ +...+.-.+||...++++.+.
T Consensus 173 ~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~ 252 (281)
T TIGR00677 173 VDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLAS 252 (281)
T ss_pred HHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 44577899999999766 221 22456789999886544433 223345566666666655443
Q ss_pred -c--eEEEEecccch
Q 016308 199 -V--KYWFTINEPNM 210 (392)
Q Consensus 199 -V--~~w~t~NEp~~ 210 (392)
| -+..|+|-+..
T Consensus 253 G~~giH~~t~n~~~~ 267 (281)
T TIGR00677 253 GIKGLHFYTLNLEKA 267 (281)
T ss_pred CCCeeEEeccCchHH
Confidence 2 34445665543
No 199
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=22.15 E-value=1.7e+02 Score=29.39 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=36.4
Q ss_pred cHHH--HHHHHHcCCCeeEecccccc---ccccCCCCCCCh----hHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 016308 100 YLED--IDLMESLGVNSYRFSISWAR---ILPKGRFGDVNS----EGINHYNKLIDALLLKGIQPFVTLTQFD 163 (392)
Q Consensus 100 y~eD--i~l~k~lG~~~~R~si~WsR---i~P~~~~g~~n~----~~~~~y~~~i~~l~~~GI~pivtL~H~~ 163 (392)
+..| ++++|++|++.+=+.-.... +-|... ..+|- -.-+...++.++|+++||++.+-++++|
T Consensus 91 fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~-t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 91 FDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKY-TDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp --HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT--SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred CCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCC-CcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 4444 89999999997765432221 112211 11221 1246788999999999999999887765
No 200
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=21.77 E-value=7.2e+02 Score=25.76 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=75.0
Q ss_pred HHHHHhhccccccccccccCCCCCCCCCCCCEEeeeeccccccCcccCCCCccceeeecccCCCCcCCCCCCCccCcccc
Q 016308 19 LLMMLLSPLFISCDQTTLKQSLDPSPFPSNFLFGTSTSSYQVEGAYVSEGKGLSNWDVFTHTPGNIDDGSSGDVAVDHYH 98 (392)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~AtSa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~ 98 (392)
|=-+-..|.-++|=|++--.-|.. |+ |..|-+-|+-|.+ ||+ | ..-.
T Consensus 25 l~~l~~i~iS~hCWQgDDV~GFe~---~~----~~l~GGIq~TGNy----------------PG~---------A-r~~~ 71 (417)
T PF06134_consen 25 LERLQKIPISMHCWQGDDVKGFEN---PD----GALSGGIQATGNY----------------PGK---------A-RTPD 71 (417)
T ss_dssp HHHHTT--EEEEGGGCTTT-TSSS---SS----S---SS-----------------------S--------------SHH
T ss_pred HHHHhcCceeeeccccCccccccC---CC----CCCCcCeeccCCC----------------CCC---------C-CCHH
Confidence 334456789999999876443332 12 3334455665533 222 1 1122
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhH--HHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCC-
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEG--INHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW- 175 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~--~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw- 175 (392)
..+.|++.+.++=-...|+.+-=.=.+.++ ..+|... -+++..-++.++++||..=+.=.-|..|.. + .|+
T Consensus 72 elr~Dl~~a~slipG~~rlnLHa~Y~~~~g--~~vdrd~iep~hF~~Wv~wAke~glgLdfNpt~Fshp~~---~-dg~T 145 (417)
T PF06134_consen 72 ELRADLEKALSLIPGKHRLNLHAIYADTDG--EKVDRDEIEPEHFEKWVDWAKENGLGLDFNPTFFSHPKA---K-DGLT 145 (417)
T ss_dssp HHHHHHHHHHTTSSS-EEEEEEGGG---TT--S---GGG--GGGGHHHHHHHHHCT-EEEEE---SSSGGG---T-TS-S
T ss_pred HHHHHHHHHHhhCCCCcccchhHHHHHhcC--CcccccccChHHHHHHHHHHHHcCCCcccCccccCCccc---c-CCCc
Confidence 368899999998888889877322222332 2355554 468999999999999987554444677753 2 343
Q ss_pred -C--ChhhHHHHHHHHHHH---HHHhCCc------ceEEE
Q 016308 176 -L--SPESQEDFGYFADIC---FKSFGDR------VKYWF 203 (392)
Q Consensus 176 -~--~~~~~~~f~~ya~~~---~~~fgd~------V~~w~ 203 (392)
. ++++.+.+.+-+++| .+.||.+ ...|+
T Consensus 146 Ls~pD~~IR~fwI~H~~~cr~I~~~~G~~lg~~cv~niWi 185 (417)
T PF06134_consen 146 LSHPDEEIRDFWIEHGKACRRIAEYFGSELGSPCVMNIWI 185 (417)
T ss_dssp TT-SSHHHHHHHHHHHHHHHHHHHHHHHHHTS-EEEEEE-
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceeeec
Confidence 2 356777777776665 5566654 36665
No 201
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.75 E-value=1.4e+02 Score=28.26 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=38.8
Q ss_pred ccccHHHHHHHHHcCCCeeEeccccccc-cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISWARI-LPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~WsRi-~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
..+.+.=++.++++|++.+|+. ..... .+.. ...-...++.++++++.+.++||+..+=-+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS--EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC-Cccccccccc--HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3445666889999999999974 11111 1111 111123456788888999999998776443
No 202
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.61 E-value=1.8e+02 Score=30.22 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccC--CCCC-CChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKG--RFGD-VNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSP 165 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~--~~g~-~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P 165 (392)
-+|.+++|+++|++.+-+++ .-.-|+- .-++ .+ .+-..+.|+.+++.|++ +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 47889999999999666655 2222210 0022 23 45567899999999997 445554 4555
No 203
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.51 E-value=2.6e+02 Score=26.21 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEe-ecCCCCc
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGR-FGDVNSEGINHYNKLIDALLLKGIQPFVT-LTQFDSP 165 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivt-L~H~~~P 165 (392)
..++=+++++++|.+.+++..-+ + |.+. ..+......+..+++.+.+.++||...+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35666899999999998864322 1 2110 01111223455577777788999987664 3455444
No 204
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.43 E-value=8.4e+02 Score=24.58 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHcCCCeeEecccc--c----cccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHh
Q 016308 98 HRYLEDIDLMESLGVNSYRFSISW--A----RILPKGRFGDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIED 170 (392)
Q Consensus 98 ~~y~eDi~l~k~lG~~~~R~si~W--s----Ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~ 170 (392)
-.-+++++.||++|++.+-++++= . +|-|.+. .-+ ++.--+.|+.+++.||+ +-..+. ++++.|..
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~--~h~---~~~rl~~i~~a~~aG~~~v~~g~i-~Glge~~~- 232 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGP--KRD---FEYRLETPERAGRAGIRKIGLGAL-LGLSDWRT- 232 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCC--CCC---HHHHHHHHHHHHHcCCCeeceEEE-ecCCccHH-
Confidence 345888999999999988888743 2 2333221 112 33445678899999996 534443 34443322
Q ss_pred hhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 171 KYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 171 ~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
-.-.++.-++.+-.+|++ +..=+.+|+-+-
T Consensus 233 ---------d~~~~a~~l~~L~~~~~~-~~~sv~~~~l~P 262 (371)
T PRK09240 233 ---------DALMTALHLRYLQRKYWQ-AEYSISFPRLRP 262 (371)
T ss_pred ---------HHHHHHHHHHHHHHhCCC-CceeeecCcccc
Confidence 234455556666667766 334466787553
No 205
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.37 E-value=94 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCee
Q 016308 141 YNKLIDALLLKGIQP 155 (392)
Q Consensus 141 y~~~i~~l~~~GI~p 155 (392)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457888888899987
No 206
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.36 E-value=5.9e+02 Score=22.68 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 016308 103 DIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSP 165 (392)
Q Consensus 103 Di~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 165 (392)
|.+.+|+.|++.+=+-+. +|. +..|+ .|..-++.++++|| .+..+||..|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~-~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGT-TFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCC-cccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 456677767653322221 232 34563 46677777778887 3567776654
No 207
>PRK10426 alpha-glucosidase; Provisional
Probab=21.30 E-value=6.9e+02 Score=27.42 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=63.0
Q ss_pred cHHHHHHHHHcCCCeeEecc-ccccccccCCCC-------CCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchhH
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SWARILPKGRFG-------DVNSEGINHYNKLIDALLLKGIQPFVTLTQF---DSPQEI 168 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~WsRi~P~~~~g-------~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~~l 168 (392)
.++-++.+++.||..==+-| .|........ | .+|.+-+--.+++|++|++.|++.++.+.=+ +.|.+-
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~-g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSF-GKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccc-cccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 44557788888876443322 5764422110 1 2354444445789999999999988776532 233332
Q ss_pred Hhh---------hC------------C---CCChhhHHHHHHHHHHHHHHhCCcceE-EEEeccc
Q 016308 169 EDK---------YG------------A---WLSPESQEDFGYFADICFKSFGDRVKY-WFTINEP 208 (392)
Q Consensus 169 ~~~---------~g------------g---w~~~~~~~~f~~ya~~~~~~fgd~V~~-w~t~NEp 208 (392)
+-+ .| + +.|++..+.|.+..+..+...| |.. |.=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 111 01 1 5688888888877765555555 544 4788994
No 208
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.29 E-value=6.2e+02 Score=25.81 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHh
Q 016308 101 LEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIED 170 (392)
Q Consensus 101 ~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~ 170 (392)
-+.|..+.++|...+|+++ +|.++.+-..++.+.|++.|.. |+|.=.|||+=..|..
T Consensus 34 v~QI~~L~~aGceivRvav-------------p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAV-------------PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE--------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC-------------CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 4668899999999999986 2456667788999999999987 8888889998776654
No 209
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.18 E-value=6.6e+02 Score=25.60 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHcCCCeeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC-CCCchhHHhhhCCCCC
Q 016308 99 RYLEDIDLMESLGVNSYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQ-FDSPQEIEDKYGAWLS 177 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H-~~~P~~l~~~~ggw~~ 177 (392)
...+-++.++++|++.+=+ ....+.|-+ ....+-=...+++-+.|.++||++...... +..|.+ +.|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCC
Confidence 4678899999999998854 334455543 111111133667888899999996643332 222333 2267766
Q ss_pred hh--hHHHHHHHHHH---HHHHhCCc
Q 016308 178 PE--SQEDFGYFADI---CFKSFGDR 198 (392)
Q Consensus 178 ~~--~~~~f~~ya~~---~~~~fgd~ 198 (392)
++ +.+.-.++.+. +++.+|-.
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 42 32332333333 36677764
No 210
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=21.15 E-value=5.3e+02 Score=25.54 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCC--eeEeccccccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC-----CCchhHHhh--
Q 016308 101 LEDIDLMESLGVN--SYRFSISWARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQF-----DSPQEIEDK-- 171 (392)
Q Consensus 101 ~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~-----~~P~~l~~~-- 171 (392)
++-++.+++.||- ++=+.+.|..-. +. -.+|.+-+---+++|++|+++|++.++.++-+ +.|..-+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~-f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~ 103 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMDGY--RV-FTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEN 103 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhCCC--Cc-eeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHC
Confidence 4555566666554 444444554321 11 12343332224689999999999987655322 122221110
Q ss_pred -----------h--------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 172 -----------Y--------G---AWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 172 -----------~--------g---gw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
+ . -|.|++..+.|.+.-+.+. ..|- --.|+=+|||..+
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gv-dg~w~D~~Ep~~~ 163 (339)
T cd06604 104 DYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGV-DGIWNDMNEPAVF 163 (339)
T ss_pred CeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCC-ceEeecCCCcccc
Confidence 0 1 2567888888777666554 2332 3567889999864
No 211
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=21.00 E-value=2.1e+02 Score=32.07 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=43.5
Q ss_pred cHHHHHHHHHcCCCeeEeccccccccccCC-------CCCCChh--HHHHHHHHHHHHHHcCCeeEEeec
Q 016308 100 YLEDIDLMESLGVNSYRFSISWARILPKGR-------FGDVNSE--GINHYNKLIDALLLKGIQPFVTLT 160 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~WsRi~P~~~-------~g~~n~~--~~~~y~~~i~~l~~~GI~pivtL~ 160 (392)
-++-+..++++||++.=.|--|.-. |... .-++|++ |.+-+.+++.++++.||-.|+++-
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~-pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTAR-PGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcC-CCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 3566788999999998887655432 1100 0245555 566788999999999999999983
No 212
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.97 E-value=3e+02 Score=26.21 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=55.2
Q ss_pred cHHHHHHHHHcCCC--eeEeccccccccccCCCC--CCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCC
Q 016308 100 YLEDIDLMESLGVN--SYRFSISWARILPKGRFG--DVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAW 175 (392)
Q Consensus 100 y~eDi~l~k~lG~~--~~R~si~WsRi~P~~~~g--~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw 175 (392)
..+-++.+++.|+. ++=+.+.|..-. +. - .+|.+-+--..++|+.|+++|++.++.+. |. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~-f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~-v------- 90 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--GD-FTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY-I------- 90 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--ce-eeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh-H-------
Confidence 34556667765554 666666665432 11 2 45555555567999999999999998774 32 1
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEEecccchh
Q 016308 176 LSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQ 211 (392)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~ 211 (392)
.+.|.+..+.+....|= --+|+=+|||...
T Consensus 91 -----~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 120 (265)
T cd06589 91 -----REWWAEVVKKLLVSLGV-DGFWTDMGEPSPG 120 (265)
T ss_pred -----HHHHHHHHHHhhccCCC-CEEeccCCCCCcC
Confidence 34454444443333332 3567899999753
No 213
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=20.87 E-value=1.7e+02 Score=32.21 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh-----hhHHHHHHHHHHHHHHhCCcceEEEEecccch
Q 016308 143 KLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP-----ESQEDFGYFADICFKSFGDRVKYWFTINEPNM 210 (392)
Q Consensus 143 ~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~-----~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~ 210 (392)
.+++++|+++=..-+....|..|.|+. +||..+ .+.....++..-+.+.+|=.+.|--++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 688999999888777888899999996 344332 22333355566667888888888888999754
No 214
>PTZ00445 p36-lilke protein; Provisional
Probab=20.85 E-value=1.8e+02 Score=27.55 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchhHHh-hhCCCCChh---------hHHHHHHHHHHHHHHhCCcceEEEEeccc
Q 016308 139 NHYNKLIDALLLKGIQPFVTLTQFDSPQEIED-KYGAWLSPE---------SQEDFGYFADICFKSFGDRVKYWFTINEP 208 (392)
Q Consensus 139 ~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~-~~ggw~~~~---------~~~~f~~ya~~~~~~fgd~V~~w~t~NEp 208 (392)
+.-+.+++.|++.||+.+++= || +-+.. ..|||.++. ....|....+.+-+ .|=.| .-+||--.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~D--nTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~I~v-~VVTfSd~ 102 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FD--LTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SNIKI-SVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--ch--hhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CCCeE-EEEEccch
Confidence 446788999999999988753 23 22222 248898886 45556666555433 22222 23466544
No 215
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=20.73 E-value=41 Score=32.53 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccchhhhcccccCCCC
Q 016308 143 KLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPNMQVTLSYRLGCHP 222 (392)
Q Consensus 143 ~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~~~gy~~g~~~ 222 (392)
+..--+.++.+.|+++||||+.=..+ +.+....+.++.+.+=|+.--.++-.+-..|---....+.+-+||..-.++
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred CcceeeecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 44444566679999999999953222 344444556666666444433333222122222223334456788876663
No 216
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.58 E-value=7.1e+02 Score=25.07 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=57.4
Q ss_pred ccccHHHHHHHHHcCCCeeEecccc--ccccccCCC-CCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchhHHhhh
Q 016308 97 YHRYLEDIDLMESLGVNSYRFSISW--ARILPKGRF-GDVNSEGINHYNKLIDALLLKGIQ-PFVTLTQFDSPQEIEDKY 172 (392)
Q Consensus 97 y~~y~eDi~l~k~lG~~~~R~si~W--sRi~P~~~~-g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~~l~~~~ 172 (392)
...-.++++.++++|++.+.++++= ...++.-.. |. ...++.--+.++.+++.||+ +-+.+. +++|.|..+
T Consensus 158 ~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~--~h~~~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d-- 232 (366)
T TIGR02351 158 QPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGK--KKDFRYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTD-- 232 (366)
T ss_pred ccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCC--CCCHHHHHHHHHHHHHcCCCeeceeEE-EeCchhHHH--
Confidence 3467899999999999988887732 333332100 11 01133445688999999998 344443 455543332
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecccc
Q 016308 173 GAWLSPESQEDFGYFADICFKSFGDRVKYWFTINEPN 209 (392)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~ 209 (392)
.-..+.-.+.+-.+|.+ ....+.+|+-+
T Consensus 233 --------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 233 --------AFFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred --------HHHHHHHHHHHHHHcCC-CCccccccccc
Confidence 22344444555556654 34557788755
No 217
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.55 E-value=2.2e+02 Score=28.80 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=57.1
Q ss_pred cHHHHHHHHHcCCCeeEecc-cc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCC
Q 016308 100 YLEDIDLMESLGVNSYRFSI-SW-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLS 177 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si-~W-sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~ 177 (392)
-.+.++.|+++|+|.+-+++ += .++...- |+.. ..+-..+.++.+++.++.+.++|. +++|.-
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l--~R~~--~~~~~~~ai~~~~~~~~~v~~dli-~GlPgq---------- 167 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL--GRLH--SVAEALAAIDLAREIFPRVSFDLI-YARPGQ---------- 167 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHhCccEEEEee-cCCCCC----------
Confidence 34999999999999777776 22 2332221 3321 133455788888888888888886 666631
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecccchhh
Q 016308 178 PESQEDFGYFADICFKSFGDRVKYWFTINEPNMQV 212 (392)
Q Consensus 178 ~~~~~~f~~ya~~~~~~fgd~V~~w~t~NEp~~~~ 212 (392)
+.+.+.+=.+.+.+-=-++|..+...-||+...
T Consensus 168 --t~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l 200 (380)
T PRK09057 168 --TLAAWRAELKEALSLAADHLSLYQLTIEEGTAF 200 (380)
T ss_pred --CHHHHHHHHHHHHhcCCCeEEeecceecCCChH
Confidence 122333334444432224577776777776543
No 218
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.42 E-value=3.5e+02 Score=26.91 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHcCCCeeEecc----cc-------ccccccC--------CCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 016308 99 RYLEDIDLMESLGVNSYRFSI----SW-------ARILPKG--------RFGDVNSEGINHYNKLIDALLLKGIQPFVTL 159 (392)
Q Consensus 99 ~y~eDi~l~k~lG~~~~R~si----~W-------sRi~P~~--------~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 159 (392)
..++-|+.|+..++|.+-+-+ +| +++-..+ ..|.+-. +-++++++.++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 366779999999999877666 24 2332111 0023443 347799999999999999775
Q ss_pred cCCCCchhH
Q 016308 160 TQFDSPQEI 168 (392)
Q Consensus 160 ~H~~~P~~l 168 (392)
|+|...
T Consensus 96 ---D~PGH~ 101 (329)
T cd06568 96 ---DMPGHT 101 (329)
T ss_pred ---CCcHHH
Confidence 677654
No 219
>PRK08508 biotin synthase; Provisional
Probab=20.13 E-value=2.2e+02 Score=27.54 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=50.7
Q ss_pred cHHHHHHHHHcCCCeeEecccc-ccccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchhHHhhhCCCCCh
Q 016308 100 YLEDIDLMESLGVNSYRFSISW-ARILPKGRFGDVNSEGINHYNKLIDALLLKGIQPFVTLTQFDSPQEIEDKYGAWLSP 178 (392)
Q Consensus 100 y~eDi~l~k~lG~~~~R~si~W-sRi~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~~l~~~~ggw~~~ 178 (392)
.+|.++.||+.|++++-.+++= +++.|+-. ..-+ ++..-+.++.+++.||++.-++. + |- -
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~~---~~~~l~~i~~a~~~Gi~v~sg~I----~-------Gl---G 162 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTHT---WEERFQTCENAKEAGLGLCSGGI----F-------GL---G 162 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCCC---HHHHHHHHHHHHHcCCeecceeE----E-------ec---C
Confidence 5899999999999999988732 44666542 1222 44455678889999997755443 1 21 1
Q ss_pred hhHHHHHHHHHHHHHHhCCc
Q 016308 179 ESQEDFGYFADICFKSFGDR 198 (392)
Q Consensus 179 ~~~~~f~~ya~~~~~~fgd~ 198 (392)
++.+.-++-+..+ ++++..
T Consensus 163 Et~ed~~~~l~~l-r~L~~~ 181 (279)
T PRK08508 163 ESWEDRISFLKSL-ASLSPH 181 (279)
T ss_pred CCHHHHHHHHHHH-HcCCCC
Confidence 2344555555554 567665
Done!