BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>016309
MAVVMAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNAPNE
VKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQ
AGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAA
STVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNH
LMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISY
LKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNF
SFTEVLSPSRVIPAAARRFGTTSTKFLPSSD

High Scoring Gene Products

Symbol, full name Information P value
CaS
calcium sensing receptor
protein from Arabidopsis thaliana 4.3e-125
TROL
thylakoid rhodanese-like
protein from Arabidopsis thaliana 0.00067

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016309
        (391 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2178287 - symbol:CaS "calcium sensing receptor...  1229  4.3e-125  1
TAIR|locus:2124998 - symbol:TROL "thylakoid rhodanese-lik...   116  0.00067   1


>TAIR|locus:2178287 [details] [associations]
            symbol:CaS "calcium sensing receptor" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0071277 "cellular response to calcium ion"
            evidence=IMP] [GO:0090333 "regulation of stomatal closure"
            evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0009704 "de-etiolation" evidence=IMP] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0006098 "pentose-phosphate
            shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0006636 "unsaturated fatty acid biosynthetic process"
            evidence=RCA] [GO:0009416 "response to light stimulus"
            evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=RCA]
            [GO:0010114 "response to red light" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0010218 "response to
            far red light" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015994 "chlorophyll metabolic process"
            evidence=RCA] [GO:0019216 "regulation of lipid metabolic process"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0031408
            "oxylipin biosynthetic process" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] PROSITE:PS00380
            PROSITE:PS00683 Pfam:PF00581 GO:GO:0016021 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0071277 EMBL:AB006708
            Gene3D:3.40.250.10 InterPro:IPR001763 SMART:SM00450 SUPFAM:SSF52821
            PROSITE:PS50206 GO:GO:0090333 GO:GO:0009535 EMBL:AY341888
            EMBL:AY045798 EMBL:AY079331 EMBL:BT000666 IPI:IPI00530400
            RefSeq:NP_197697.1 UniGene:At.24421 UniGene:At.71491
            UniGene:At.74783 ProteinModelPortal:Q9FN48 SMR:Q9FN48 PaxDb:Q9FN48
            PRIDE:Q9FN48 ProMEX:Q9FN48 EnsemblPlants:AT5G23060.1 GeneID:832370
            KEGG:ath:AT5G23060 GeneFarm:3345 TAIR:At5g23060 eggNOG:NOG315676
            HOGENOM:HOG000030520 InParanoid:Q9FN48 OMA:LPSNAKN
            ProtClustDB:CLSN2686105 Genevestigator:Q9FN48 GO:GO:0009704
            Uniprot:Q9FN48
        Length = 387

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 247/359 (68%), Positives = 297/359 (82%)

Query:    36 LKPNSVLLPTSTSFSLLALF-NAPNEVKA-LTLDKDQIVSSLNEVEKTIDQVQEAGSSFL 93
             L+  SV LPTSTS SLL+LF + P+E KA +++ KDQIVSSL EVEKTI+QVQE GSS  
Sbjct:    29 LRQVSVSLPTSTSISLLSLFASPPHEAKAAVSIPKDQIVSSLTEVEKTINQVQETGSSVF 88

Query:    94 ETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGXXXXX 153
             + TQ+V   VG ALKPA+D ALPI KQAGEEA+K+ASPA S+A+KKAQEA+QS+G     
Sbjct:    89 DATQRVFQVVGDALKPALDTALPIAKQAGEEAMKLASPAFSEASKKAQEAMQSSGFDSEP 148

Query:   154 XXXXXXXXXXXXQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWS 213
                         QQ SK I +AKPIA+ST++TISS DP VIV  AGA F+AYLLLPP++S
Sbjct:   149 VFNAAKTVTDVAQQTSKAIEDAKPIASSTMDTISSADPSVIVVAAGAAFLAYLLLPPVFS 208

Query:   214 VISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLE 273
              ISF+ RGYKG+LTPAQ+LDL+  +N+LM+DIRSEKDK+KAGIPRLP +AKNR++SIPLE
Sbjct:   209 AISFNFRGYKGDLTPAQTLDLLCTKNYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLE 268

Query:   274 ELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFK 333
             ELP+K+KG+VRN+K+VEAEI ALKISYLK+INKGS III+DSY+DSAKIVA+ L  LG+K
Sbjct:   269 ELPNKVKGIVRNSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYK 328

Query:   334 NCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTTS-TKFLPSSD 391
             NC+IV DGFSG RGWLQSRLG+DSYNFSF +VLSPSR+IPAA+R FGT S TKFLPSSD
Sbjct:   329 NCYIVTDGFSGGRGWLQSRLGTDSYNFSFAQVLSPSRIIPAASRSFGTRSGTKFLPSSD 387


>TAIR|locus:2124998 [details] [associations]
            symbol:TROL "thylakoid rhodanese-like" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0042742 "defense
            response to bacterium" evidence=IEP;RCA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0009772 "photosynthetic electron
            transport in photosystem II" evidence=IMP] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0000096 "sulfur amino acid metabolic
            process" evidence=RCA] [GO:0000165 "MAPK cascade" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0006546 "glycine
            catabolic process" evidence=RCA] [GO:0006612 "protein targeting to
            membrane" evidence=RCA] [GO:0006636 "unsaturated fatty acid
            biosynthetic process" evidence=RCA] [GO:0006733 "oxidoreduction
            coenzyme metabolic process" evidence=RCA] [GO:0006766 "vitamin
            metabolic process" evidence=RCA] [GO:0008652 "cellular amino acid
            biosynthetic process" evidence=RCA] [GO:0009072 "aromatic amino
            acid family metabolic process" evidence=RCA] [GO:0009106 "lipoate
            metabolic process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic
            process" evidence=RCA] [GO:0009117 "nucleotide metabolic process"
            evidence=RCA] [GO:0009409 "response to cold" evidence=RCA]
            [GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009595
            "detection of biotic stimulus" evidence=RCA] [GO:0009637 "response
            to blue light" evidence=RCA] [GO:0009657 "plastid organization"
            evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
            evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=RCA] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0009749 "response to glucose stimulus"
            evidence=RCA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=RCA] [GO:0009814 "defense response,
            incompatible interaction" evidence=RCA] [GO:0009862 "systemic
            acquired resistance, salicylic acid mediated signaling pathway"
            evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
            pathway" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
            [GO:0010200 "response to chitin" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0010218 "response to
            far red light" evidence=RCA] [GO:0010310 "regulation of hydrogen
            peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
            of plant-type hypersensitive response" evidence=RCA] [GO:0015979
            "photosynthesis" evidence=RCA] [GO:0015994 "chlorophyll metabolic
            process" evidence=RCA] [GO:0015995 "chlorophyll biosynthetic
            process" evidence=RCA] [GO:0019216 "regulation of lipid metabolic
            process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
            biosynthetic process, mevalonate-independent pathway" evidence=RCA]
            [GO:0019344 "cysteine biosynthetic process" evidence=RCA]
            [GO:0019684 "photosynthesis, light reaction" evidence=RCA]
            [GO:0019748 "secondary metabolic process" evidence=RCA] [GO:0031348
            "negative regulation of defense response" evidence=RCA] [GO:0031408
            "oxylipin biosynthetic process" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0043900 "regulation of
            multi-organism process" evidence=RCA] [GO:0044272 "sulfur compound
            biosynthetic process" evidence=RCA] [GO:0050832 "defense response
            to fungus" evidence=RCA] PROSITE:PS00380 PROSITE:PS00683
            GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0042742
            GO:GO:0009941 Gene3D:3.40.250.10 InterPro:IPR001763 SUPFAM:SSF52821
            PROSITE:PS50206 GO:GO:0009535 GO:GO:0009772 EMBL:AL161491
            EMBL:AF007269 EMBL:AY057701 EMBL:AY057565 EMBL:AY124870
            EMBL:AK226302 IPI:IPI00522460 PIR:H85013 PIR:T01733
            RefSeq:NP_567209.1 UniGene:At.22549 UniGene:At.70023
            UniGene:At.75032 PDB:1VEE PDB:2DCQ PDBsum:1VEE PDBsum:2DCQ
            ProteinModelPortal:Q9M158 SMR:Q9M158 STRING:Q9M158 PaxDb:Q9M158
            PRIDE:Q9M158 ProMEX:Q9M158 EnsemblPlants:AT4G01050.1 GeneID:827921
            KEGG:ath:AT4G01050 TAIR:At4g01050 eggNOG:NOG274043
            HOGENOM:HOG000238961 InParanoid:Q9M158 OMA:LAYTEIE PhylomeDB:Q9M158
            ProtClustDB:CLSN2689270 EvolutionaryTrace:Q9M158
            Genevestigator:Q9M158 GermOnline:AT4G01050 Uniprot:Q9M158
        Length = 466

 Score = 116 (45.9 bits), Expect = 0.00067, P = 0.00067
 Identities = 42/172 (24%), Positives = 75/172 (43%)

Query:   183 VETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLM 242
             +    + +P+VI G   AL + ++L      V++   + +  E        L T  N  +
Sbjct:    95 ISNFVTDNPLVIAGGVAALAVPFVLS----QVLNKKPKSWGVESAKNAYTKLGTDDNAQL 150

Query:   243 IDIRSEKDKDKAGIPRLPPSAKNRMVSIPL-EELPSKLKGLVRNAKKVEAEIVALKISYL 301
             +DIR+  D  + G P +    K  + ++   E+ P  LK L    K  E           
Sbjct:   151 LDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPE----------- 199

Query:   302 KRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRL 353
                   + + I+D +  ++++VA ++   GFK+ + + DG  G RGWL S L
Sbjct:   200 -----NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSL 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.350    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      391       352   0.00078  117 3  11 23  0.43    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  169 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.94u 0.10s 30.04t   Elapsed:  00:00:01
  Total cpu time:  29.94u 0.10s 30.04t   Elapsed:  00:00:01
  Start:  Fri May 10 23:40:39 2013   End:  Fri May 10 23:40:40 2013

Back to top