BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016309
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
At4g01050 From Arabidopsis Thaliana
pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
Rhodanese Homology Domain At4g01050(175-295) From
Arabidopsis Thaliana
Length = 134
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSI-PLEELPSKLKGLVRNAKKVEAE 292
L T N ++DIR+ D + G P + K + ++ E+ P LK L K E
Sbjct: 16 LGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPE-- 73
Query: 293 IVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352
+ + I+D + ++++VA ++ GFK+ + + DG G RGWL S
Sbjct: 74 --------------NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSS 119
Query: 353 L 353
L
Sbjct: 120 L 120
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343
+NK KI+I+D +S +IV +L LGF N DG +
Sbjct: 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLT 48
>pdb|2BSZ|A Chain A, Structure Of Mesorhizobium Loti Arylamine N-
Acetyltransferase 1
pdb|2BSZ|B Chain B, Structure Of Mesorhizobium Loti Arylamine N-
Acetyltransferase 1
Length = 278
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 190 DPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDI 245
D +V+ G G F LL + F + G + QS D ITA++H+++ +
Sbjct: 62 DKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRV 117
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSF 362
R +K K +++D +S +IV +L LGF N DG ++L + Y F
Sbjct: 2 RSDKELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVI 56
Query: 363 TEVLSPS 369
++ P+
Sbjct: 57 SDWNMPN 63
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 54 LFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDA 113
L NA NE+K L +D+IV+++ +EK+I +E ++ + T+++ S +K VD
Sbjct: 2141 LENAANELK---LKQDEIVATITALEKSIATYKEEYATLIRETEQI-KTESSKVKNKVDR 2196
Query: 114 ALPIVKQAGEE 124
++ ++ E
Sbjct: 2197 SIALLDNLNSE 2207
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 54 LFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDA 113
L NA NE+K L +D+IV+++ +EK+I +E ++ + T+++ S +K VD
Sbjct: 2019 LENAANELK---LKQDEIVATITALEKSIATYKEEYATLIRETEQI-KTESSKVKNKVDR 2074
Query: 114 ALPIVKQAGEE 124
++ ++ E
Sbjct: 2075 SIALLDNLNSE 2085
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSF 362
R +K K +++D +S +IV +L LGF N DG ++L + Y F
Sbjct: 1 RSDKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVI 55
Query: 363 TEVLSPS 369
++ P+
Sbjct: 56 SDWNMPN 62
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WRMPN 62
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNXPN 61
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D++S +IV +L LGF N DG ++L + Y F ++
Sbjct: 1 DKELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 55
Query: 365 VLSPS 369
P+
Sbjct: 56 WNMPN 60
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVISD 56
Query: 365 VLSPS 369
+ P+
Sbjct: 57 WMMPN 61
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
+ P+
Sbjct: 57 WMMPN 61
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 57
Query: 365 VLSPS 369
P+
Sbjct: 58 WNMPN 62
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 2 DKELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVISD 56
Query: 365 VLSPS 369
P+
Sbjct: 57 WNMPN 61
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 60
Query: 365 VLSPS 369
P+
Sbjct: 61 WDMPN 65
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 60
Query: 365 VLSPS 369
P+
Sbjct: 61 WDMPN 65
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDA-----LNKLQAGGYGFVISD 60
Query: 365 VLSPS 369
P+
Sbjct: 61 WDMPN 65
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADG 341
+K K +++D +S +IV +L LGF N DG
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDG 38
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADG 341
+K K +++D +S +IV +L LGF N DG
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDG 39
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNF 360
+K K +++D +S +IV +L LGF N DG ++L + Y F
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGF 53
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADG 341
+K K +++D +S +IV +L LGF N DG
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDG 38
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADG 341
+K K +++D +S +IV +L LGF N DG
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDG 38
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNF 360
+K K +++D +S +IV +L LGF N DG ++L + Y F
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGF 52
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364
+K K +++D +S +IV +L LGF N DG ++L + Y F ++
Sbjct: 6 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGFVISD 60
Query: 365 VLSPS 369
P+
Sbjct: 61 WDMPN 65
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADG 341
+K K +++D +S +IV +L LGF N DG
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDG 38
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNF 360
+K K +++D +S +IV +L LGF N DG ++L + Y F
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL-----NKLQAGGYGF 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,728,716
Number of Sequences: 62578
Number of extensions: 321061
Number of successful extensions: 871
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 46
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)