BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016309
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 269/390 (68%), Positives = 326/390 (83%), Gaps = 11/390 (2%)
Query: 5 MAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALF-NAPNEVKA 63
MA +SS +AKL++P+S S K+ S L+ SV LPTSTS SLL+LF + P+E KA
Sbjct: 6 MATKSSLSAKLTLPSS----STKKTLS----LRQVSVSLPTSTSISLLSLFASPPHEAKA 57
Query: 64 -LTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAG 122
+++ KDQIVSSL EVEKTI+QVQE GSS + TQ+V VG ALKPA+D ALPI KQAG
Sbjct: 58 AVSIPKDQIVSSLTEVEKTINQVQETGSSVFDATQRVFQVVGDALKPALDTALPIAKQAG 117
Query: 123 EEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAAST 182
EEA+K+ASPA S+A+KKAQEA+QS+G D+E V AAKTV D AQQ SK I +AKPIA+ST
Sbjct: 118 EEAMKLASPAFSEASKKAQEAMQSSGFDSEPVFNAAKTVTDVAQQTSKAIEDAKPIASST 177
Query: 183 VETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLM 242
++TISS DP VIV AGA F+AYLLLPP++S ISF+ RGYKG+LTPAQ+LDL+ +N+LM
Sbjct: 178 MDTISSADPSVIVVAAGAAFLAYLLLPPVFSAISFNFRGYKGDLTPAQTLDLLCTKNYLM 237
Query: 243 IDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302
+DIRSEKDK+KAGIPRLP +AKNR++SIPLEELP+K+KG+VRN+K+VEAEI ALKISYLK
Sbjct: 238 VDIRSEKDKEKAGIPRLPSNAKNRVISIPLEELPNKVKGIVRNSKRVEAEIAALKISYLK 297
Query: 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSF 362
+INKGS III+DSY+DSAKIVA+ L LG+KNC+IV DGFSG RGWLQSRLG+DSYNFSF
Sbjct: 298 KINKGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSGGRGWLQSRLGTDSYNFSF 357
Query: 363 TEVLSPSRVIPAAARRFGTTS-TKFLPSSD 391
+VLSPSR+IPAA+R FGT S TKFLPSSD
Sbjct: 358 AQVLSPSRIIPAASRSFGTRSGTKFLPSSD 387
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic
OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
Length = 466
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 183 VETIS---SGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQN 239
+E IS + +P+VI G AL + ++L V++ + + E L T N
Sbjct: 92 IEGISNFVTDNPLVIAGGVAALAVPFVL----SQVLNKKPKSWGVESAKNAYTKLGTDDN 147
Query: 240 HLMIDIRSEKDKDKAGIPRLPPSAKNRMVSI-PLEELPSKLKGLVRNAKKVEAEIVALKI 298
++DIR+ D + G P + K + ++ E+ P LK L K E
Sbjct: 148 AQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPE-------- 199
Query: 299 SYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRL 353
+ + I+D + ++++VA ++ GFK+ + + DG G RGWL S L
Sbjct: 200 --------NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSL 246
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP600 PE=4 SV=1
Length = 123
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEI 293
LI N ++D+R++++ + GIP L KN+++ + L+ L +N + I
Sbjct: 15 LILNNNAFLVDVRTQEEWKQVGIPHL--DNKNKVIFLSLQ--------LNKNFEDNFLSI 64
Query: 294 VALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR---RGWLQ 350
+ KI + I + + I A + ++G+KNC+ ++DGF G +GW Q
Sbjct: 65 INEKID--------TAIFFLCRSGYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQ 116
Query: 351 SRL 353
+ L
Sbjct: 117 NNL 119
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4
SV=1
Length = 123
Score = 45.1 bits (105), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEI 293
LI+ N ++D+R+ ++ + GIP L KN+M+ + + L ++ + I
Sbjct: 15 LISNDNAFLVDVRTREEWQQVGIPHL--DNKNKMLFLSWQ--------LNKDFEDNFLSI 64
Query: 294 VALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR---RGWLQ 350
+ KI + I + + I A +T++G+KNC+ ++DGF G +GW Q
Sbjct: 65 INDKIHAI--------IFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQ 116
Query: 351 SRL 353
+ L
Sbjct: 117 NNL 119
>sp|P0A3K3|YDNAA_RICMO Uncharacterized protein in dnaA 5'region OS=Rickettsia montana PE=4
SV=1
Length = 123
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEI 293
LI+ N ++D+R+ ++ + GIP L KN+++ + + L ++ + I
Sbjct: 15 LISNDNAFLVDVRTREEWQQVGIPHL--DNKNKVIFLSWQ--------LNKDFEDNFLSI 64
Query: 294 VALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR---RGWLQ 350
V KI + I + + I A +T++G+KNC+ ++DGF G +GW Q
Sbjct: 65 VNDKIHAI--------IFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQ 116
Query: 351 SRL 353
+ L
Sbjct: 117 NNL 119
>sp|P0A3K2|Y915_RICCN Uncharacterized protein RC0915 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0915 PE=4 SV=1
Length = 123
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEI 293
LI+ N ++D+R+ ++ + GIP L KN+++ + + L ++ + I
Sbjct: 15 LISNDNAFLVDVRTREEWQQVGIPHL--DNKNKVIFLSWQ--------LNKDFEDNFLSI 64
Query: 294 VALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR---RGWLQ 350
V KI + I + + I A +T++G+KNC+ ++DGF G +GW Q
Sbjct: 65 VNDKIHAI--------IFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQ 116
Query: 351 SRL 353
+ L
Sbjct: 117 NNL 119
>sp|Q56XR7|STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic
OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1
Length = 264
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 182 TVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLD----LITA 237
T++ + P + G YL+ ++ + F LR YK P +++ L
Sbjct: 85 TIDNFFNKYPFFVAGCT----FTYLV---VYPAVMFYLRKYK----PISAMNAFRKLKNE 133
Query: 238 QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEE-----LPSKLKGLVRNAKKVEAE 292
+ ++DIR K P L K+ V +P E +K+KG +A+
Sbjct: 134 SDSQLLDIRDVKTLALLASPNLKFLGKSS-VQVPFSENDEEGFLTKVKGSFSDAE----- 187
Query: 293 IVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349
+ + ++D++ ++ VA +L GFK + + G G+ GWL
Sbjct: 188 --------------NTVVCVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWL 230
>sp|P39057|DYHC_HELCR Dynein beta chain, ciliary OS=Heliocidaris crassispina PE=1 SV=1
Length = 4466
Score = 37.4 bits (85), Expect = 0.20, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 91 SFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKK--AQEAIQSTG 148
S L K L A L+ + +Q + K+AS + A K A + IQ G
Sbjct: 3033 SLLAMKSKELTAKMERLENGLTKLQSTAQQVDDLKAKLASQEVELAQKNEDADKLIQVVG 3092
Query: 149 VDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVI 194
V+TEKV+ TV D ++++ + E A E ++ +P ++
Sbjct: 3093 VETEKVSKEKATVDDEEKKVAIINEEVSKKAKDCSEDLAKAEPALL 3138
>sp|C1A8P2|SECD_GEMAT Protein translocase subunit SecD OS=Gemmatimonas aurantiaca (strain
T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=secD PE=3
SV=1
Length = 556
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 75 LNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAIS 134
++E ++T+ EA L+ ++ +D G A P+V++AG E L + P I
Sbjct: 63 VDESKQTVADKSEALDRALKVVRQRIDEFG--------VAEPVVQKAGSERLIVELPGID 114
Query: 135 DATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSG 189
DA ++AQ+ +Q K A + D Q + KV+ IA + T++SG
Sbjct: 115 DA-ERAQDVVQ-------KSAFLEFQITDKTQALEKVVPRFDEIAKTQGITVASG 161
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 124 EALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKV--IGEAKP--IA 179
E LK SPA D + + + I+ G+D K T+ +AQ IS + +G KP I
Sbjct: 386 EELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQ 445
Query: 180 ASTVETISSGDPVVIVGTAGALFIAYLLLP 209
A + I+SG V+ V G+ LLP
Sbjct: 446 AQAIPAITSGRDVIGVAKTGSGKTIAFLLP 475
>sp|A6Q3V4|RNY_NITSB Ribonuclease Y OS=Nitratiruptor sp. (strain SB155-2) GN=rny PE=3
SV=1
Length = 522
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 48 SFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSAL 107
SL +F +E+K +TL+K +I + E+ + ++ +E + E Q+VL+A+
Sbjct: 93 EMSLKQMF--KDELKHITLEKQEIKAEREEINRLKNEYEELKKRYQEKYQEVLEALQQQA 150
Query: 108 KPAVDAALPIVKQAGEEALKIASPAISDATKKAQE 142
++ A ++ Q EE ++ I++ +K +E
Sbjct: 151 GLTLEEAKNLILQKAEEESRL---EIANIVRKYEE 182
>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2
SV=2
Length = 4057
Score = 33.9 bits (76), Expect = 2.0, Method: Composition-based stats.
Identities = 75/307 (24%), Positives = 124/307 (40%), Gaps = 63/307 (20%)
Query: 35 QLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLE 94
+L+ + + PTS L++ F E K +++++ E +D++ A SS +
Sbjct: 2584 ELQRYNYVTPTSY-LELISTFKLLLEKK-----RNEVMKMKRRYEVGLDKLDSA-SSQVA 2636
Query: 95 TTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKV 154
T Q L+A+ LK A ++ +E++++A T+K +A ++ D
Sbjct: 2637 TMQGELEALHPQLKVASRQVDDMMIMIEKESIEVAK------TEKIVKADETVANDQAMA 2690
Query: 155 ATAAKTVADAAQQISKVIGEAKPI---AASTVETISSGDPVVIVGTAGALFIAYLLLPPI 211
A A K DA + EA PI A + ++T+++ D V+ L++ I
Sbjct: 2691 AKAIKDECDAD------LAEALPILESALAALDTLTAQDITVVKSMKSPPAGVKLVMEAI 2744
Query: 212 WSVISFSLRGYKGELTPAQS------LDLITAQNHLMIDIR-----SEKDKDKAGIPRLP 260
L+G K + P + D L+ DIR E DKD +P
Sbjct: 2745 CI-----LKGIKADKIPDPTGSGKKIEDFWGPAKRLLGDIRFLQSLHEYDKDN-----IP 2794
Query: 261 PSAKN--RMVSIPLEE-LPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYS 317
P+ N R IP + +P K +RNA + +I MDSY
Sbjct: 2795 PAYMNIIRKSYIPNPDFVPEK----IRNASTAAEGLCKW-------------VIAMDSYD 2837
Query: 318 DSAKIVA 324
AKIVA
Sbjct: 2838 KVAKIVA 2844
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1
Length = 4466
Score = 33.9 bits (76), Expect = 2.4, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 91 SFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKK--AQEAIQSTG 148
S L K L A L+ + +Q + K+AS + A K A + IQ G
Sbjct: 3033 SLLSMKSKELTAKMERLENGLTKLQSTAQQVDDLKAKLASQEVELAQKNEDADKLIQVVG 3092
Query: 149 VDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVI 194
V+TEKV+ D ++++ + E A E ++ +P ++
Sbjct: 3093 VETEKVSKEKAIADDEEKKVAIINEEVSKKAKDCSEDLAKAEPALL 3138
>sp|C4L7X3|GLPE_TOLAT Thiosulfate sulfurtransferase GlpE OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=glpE PE=3 SV=1
Length = 106
Score = 33.1 bits (74), Expect = 3.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 300 YLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRR 346
+ ++I K + +++M + +S++ VA LTS+G++ + + GF G R
Sbjct: 51 FTQQITKETPVLVMCYHGNSSQGVANYLTSIGYEKVYSIDGGFEGWR 97
>sp|B4IT27|DCLK_DROYA Serine/threonine-protein kinase GE16371 OS=Drosophila yakuba
GN=GE16371 PE=3 SV=2
Length = 750
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 13 AKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIV 72
A LS +P+ A++P+S++SKA + + S N ++ + D D V
Sbjct: 16 AVLSSLQAPTSATSPQSFTSKANAVAEAAFIENSNQQQ-----NVQKDLNSHNRDCDSPV 70
Query: 73 SSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGS 105
SS +E+EK D +++ +S L + V + GS
Sbjct: 71 SSTSELEKEFDDLRKLHTSSLTNSVVVGKSTGS 103
>sp|Q6CWX3|SNX41_KLULA Sorting nexin-41 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=SNX41 PE=3 SV=1
Length = 575
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 2 AVVMAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNA---P 58
A + A+R KL+ SP+VA S + K+ K T ++ LF + P
Sbjct: 421 ADLQAVRLGEALKLNAEESPTVAQVMDSMTRKSANK-------NHTDKQIMGLFRSSASP 473
Query: 59 N----------EVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSAL 107
N EV+ L KD+ V +N++EK ++++ E + Q+V +++ ++L
Sbjct: 474 NNKSGSDSISSEVEPHLLTKDERVVQVNKLEKELEKLNECFKLIEKDLQQVNESMDNSL 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,375,058
Number of Sequences: 539616
Number of extensions: 4867565
Number of successful extensions: 17594
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 17477
Number of HSP's gapped (non-prelim): 245
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)