Query 016309
Match_columns 391
No_of_seqs 353 out of 1615
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.8 1.2E-19 2.6E-24 149.7 9.1 98 225-349 3-100 (101)
2 cd01533 4RHOD_Repeat_2 Member 99.8 2.3E-19 5.1E-24 150.1 8.7 97 225-352 11-109 (109)
3 PRK00162 glpE thiosulfate sulf 99.8 8.6E-19 1.9E-23 146.4 9.0 101 225-358 6-106 (108)
4 cd01527 RHOD_YgaP Member of th 99.8 1.5E-18 3.2E-23 142.3 9.2 97 225-355 3-99 (99)
5 cd01522 RHOD_1 Member of the R 99.8 2E-18 4.3E-23 147.2 10.1 104 226-349 1-106 (117)
6 cd01519 RHOD_HSP67B2 Member of 99.8 1.4E-18 3E-23 143.4 7.7 103 227-349 2-105 (106)
7 PLN02160 thiosulfate sulfurtra 99.8 4.4E-18 9.6E-23 149.6 10.8 113 225-359 16-130 (136)
8 cd01448 TST_Repeat_1 Thiosulfa 99.7 3.6E-18 7.7E-23 145.0 9.2 110 226-352 2-122 (122)
9 cd01534 4RHOD_Repeat_3 Member 99.7 2.5E-18 5.5E-23 140.4 7.8 92 226-349 1-94 (95)
10 KOG1530 Rhodanese-related sulf 99.7 3E-18 6.5E-23 149.2 8.5 113 224-356 23-135 (136)
11 cd01528 RHOD_2 Member of the R 99.7 4.3E-18 9.3E-23 140.4 7.9 95 226-347 2-98 (101)
12 cd01523 RHOD_Lact_B Member of 99.7 8.8E-18 1.9E-22 138.1 9.6 98 226-349 1-99 (100)
13 cd01449 TST_Repeat_2 Thiosulfa 99.7 3.5E-18 7.6E-23 143.8 6.9 106 226-349 1-117 (118)
14 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 9.7E-18 2.1E-22 151.7 10.2 116 217-355 30-162 (162)
15 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.7E-17 3.6E-22 134.4 8.1 91 226-349 2-95 (96)
16 cd01447 Polysulfide_ST Polysul 99.7 2E-17 4.2E-22 135.4 8.1 102 226-352 1-103 (103)
17 cd01526 RHOD_ThiF Member of th 99.7 2.3E-17 4.9E-22 141.2 8.1 107 225-354 9-117 (122)
18 cd01521 RHOD_PspE2 Member of t 99.7 4E-17 8.6E-22 137.1 9.5 99 224-355 8-110 (110)
19 cd01525 RHOD_Kc Member of the 99.7 3.3E-17 7.1E-22 135.2 8.2 99 226-349 1-104 (105)
20 cd01520 RHOD_YbbB Member of th 99.7 9.5E-17 2.1E-21 138.8 11.1 108 226-349 1-125 (128)
21 PF00581 Rhodanese: Rhodanese- 99.7 5.4E-17 1.2E-21 133.5 8.7 107 227-350 1-112 (113)
22 cd01524 RHOD_Pyr_redox Member 99.7 4.2E-17 9.1E-22 132.0 7.5 89 226-349 1-89 (90)
23 smart00450 RHOD Rhodanese Homo 99.7 6.2E-17 1.3E-21 129.0 7.8 99 237-354 2-100 (100)
24 cd01530 Cdc25 Cdc25 phosphatas 99.7 1.7E-16 3.7E-21 136.6 8.3 97 225-348 3-119 (121)
25 PRK11493 sseA 3-mercaptopyruva 99.7 2.9E-16 6.2E-21 152.8 9.7 118 225-359 6-137 (281)
26 cd01532 4RHOD_Repeat_1 Member 99.6 2.3E-16 5E-21 128.6 6.9 86 233-349 4-91 (92)
27 cd01529 4RHOD_Repeats Member o 99.6 2.8E-16 6E-21 128.4 7.2 86 237-349 10-95 (96)
28 PLN02723 3-mercaptopyruvate su 99.6 6.4E-16 1.4E-20 153.5 9.5 117 225-358 23-152 (320)
29 cd00158 RHOD Rhodanese Homolog 99.6 5.9E-16 1.3E-20 122.1 7.0 87 231-345 2-88 (89)
30 cd01445 TST_Repeats Thiosulfat 99.6 6E-16 1.3E-20 136.4 7.8 107 226-349 1-137 (138)
31 PRK01415 hypothetical protein; 99.6 8E-16 1.7E-20 148.2 9.1 101 225-352 113-213 (247)
32 PRK08762 molybdopterin biosynt 99.6 5.2E-16 1.1E-20 157.1 7.9 116 225-372 4-120 (376)
33 cd01535 4RHOD_Repeat_4 Member 99.6 9.8E-16 2.1E-20 136.2 8.7 96 231-359 2-98 (145)
34 PRK09629 bifunctional thiosulf 99.6 1.1E-15 2.3E-20 163.8 10.1 117 225-358 10-130 (610)
35 COG0607 PspE Rhodanese-related 99.6 3E-15 6.5E-20 123.4 9.0 101 227-357 8-108 (110)
36 cd01531 Acr2p Eukaryotic arsen 99.6 1.8E-15 4E-20 127.5 7.7 98 225-350 3-111 (113)
37 PRK11493 sseA 3-mercaptopyruva 99.6 1.9E-15 4E-20 147.1 7.6 113 226-357 155-279 (281)
38 PRK00142 putative rhodanese-re 99.6 2.6E-15 5.6E-20 149.2 8.2 99 225-347 113-211 (314)
39 PLN02723 3-mercaptopyruvate su 99.6 2.4E-15 5.3E-20 149.3 7.6 113 226-356 192-316 (320)
40 PRK05320 rhodanese superfamily 99.6 5E-15 1.1E-19 143.4 8.8 99 225-350 111-215 (257)
41 TIGR02981 phageshock_pspE phag 99.6 3.7E-15 8E-20 125.1 6.8 79 239-349 18-96 (101)
42 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 8.8E-15 1.9E-19 123.5 7.8 97 225-349 3-112 (113)
43 PRK10287 thiosulfate:cyanide s 99.5 1.1E-14 2.4E-19 123.0 6.5 79 239-349 20-98 (104)
44 PRK11784 tRNA 2-selenouridine 99.5 9.5E-14 2.1E-18 139.7 11.4 115 226-353 3-131 (345)
45 PRK09629 bifunctional thiosulf 99.5 4E-14 8.7E-19 151.8 8.9 116 225-358 148-272 (610)
46 PRK07878 molybdopterin biosynt 99.5 5.6E-14 1.2E-18 143.3 9.5 98 225-353 288-386 (392)
47 PRK07411 hypothetical protein; 99.5 3.7E-14 8.1E-19 144.6 8.0 100 225-353 283-384 (390)
48 COG2897 SseA Rhodanese-related 99.5 1.2E-13 2.6E-18 135.6 9.8 118 225-359 12-140 (285)
49 PRK05600 thiamine biosynthesis 99.4 2.7E-13 6E-18 137.5 8.1 97 225-343 272-369 (370)
50 COG2897 SseA Rhodanese-related 99.4 5E-13 1.1E-17 131.3 7.6 114 225-356 157-281 (285)
51 cd01446 DSP_MapKP N-terminal r 99.4 1.4E-12 3.1E-17 112.7 9.1 104 226-350 2-126 (132)
52 PRK05597 molybdopterin biosynt 99.4 5.5E-13 1.2E-17 134.5 7.4 93 225-350 262-354 (355)
53 TIGR03167 tRNA_sel_U_synt tRNA 99.4 1.4E-12 3.1E-17 129.6 9.5 103 239-354 2-118 (311)
54 COG1054 Predicted sulfurtransf 99.1 3.8E-11 8.1E-16 117.7 5.3 97 225-345 114-210 (308)
55 KOG1529 Mercaptopyruvate sulfu 99.0 1.8E-09 3.9E-14 105.4 8.7 118 225-359 6-138 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 98.9 1.3E-09 2.7E-14 114.3 7.3 85 229-340 398-482 (482)
57 KOG3772 M-phase inducer phosph 98.8 1.2E-08 2.5E-13 101.5 6.2 121 218-375 151-290 (325)
58 KOG2017 Molybdopterin synthase 98.6 2E-08 4.4E-13 100.5 4.3 100 225-351 318-419 (427)
59 KOG1529 Mercaptopyruvate sulfu 98.1 4.2E-06 9.2E-11 82.1 5.2 94 238-350 171-275 (286)
60 COG5105 MIH1 Mitotic inducer, 97.4 0.00015 3.2E-09 72.5 4.7 113 224-376 242-373 (427)
61 COG2603 Predicted ATPase [Gene 96.7 0.0029 6.2E-08 62.8 5.7 108 230-346 6-127 (334)
62 TIGR01244 conserved hypothetic 93.0 0.4 8.6E-06 42.1 7.3 90 224-333 13-113 (135)
63 PF04273 DUF442: Putative phos 92.1 0.96 2.1E-05 38.8 8.3 27 224-250 13-39 (110)
64 KOG1717 Dual specificity phosp 88.0 0.33 7.1E-06 48.1 2.3 98 225-345 5-121 (343)
65 KOG1093 Predicted protein kina 87.6 0.25 5.4E-06 53.3 1.3 83 239-343 634-716 (725)
66 PRK00142 putative rhodanese-re 86.5 0.064 1.4E-06 53.9 -3.7 49 226-283 16-64 (314)
67 PF13350 Y_phosphatase3: Tyros 82.9 11 0.00025 33.6 9.6 30 225-254 29-58 (164)
68 PHA01399 membrane protein P6 78.0 52 0.0011 31.3 12.2 48 145-203 138-185 (242)
69 cd00127 DSPc Dual specificity 73.8 13 0.00027 31.5 6.7 27 306-332 80-109 (139)
70 TIGR03167 tRNA_sel_U_synt tRNA 73.4 12 0.00026 37.7 7.4 33 225-257 137-172 (311)
71 KOG3636 Uncharacterized conser 70.3 11 0.00023 40.2 6.3 90 240-345 327-426 (669)
72 PF09992 DUF2233: Predicted pe 67.5 6.4 0.00014 35.2 3.6 39 305-343 98-141 (170)
73 PF13852 DUF4197: Protein of u 62.1 18 0.00038 34.4 5.6 89 101-196 11-103 (202)
74 PF02590 SPOUT_MTase: Predicte 59.8 28 0.00061 31.6 6.3 45 301-345 61-110 (155)
75 smart00195 DSPc Dual specifici 58.8 37 0.00081 28.9 6.7 29 305-333 76-107 (138)
76 PF03853 YjeF_N: YjeF-related 53.9 20 0.00042 32.6 4.3 32 305-337 23-57 (169)
77 COG3453 Uncharacterized protei 50.1 25 0.00055 31.1 4.2 27 224-250 14-40 (130)
78 COG2085 Predicted dinucleotide 48.9 75 0.0016 30.6 7.5 101 229-343 78-182 (211)
79 PRK12361 hypothetical protein; 48.7 1.7E+02 0.0037 31.5 11.1 18 305-322 173-191 (547)
80 PLN03050 pyridoxine (pyridoxam 46.9 28 0.0006 33.9 4.4 31 307-338 60-93 (246)
81 PRK01565 thiamine biosynthesis 44.2 24 0.00051 36.6 3.6 27 307-333 176-202 (394)
82 TIGR00342 thiazole biosynthesi 43.5 28 0.0006 35.8 4.0 30 306-336 171-200 (371)
83 PRK08384 thiamine biosynthesis 43.0 25 0.00055 36.5 3.6 27 307-333 180-206 (381)
84 PRK00103 rRNA large subunit me 42.5 24 0.00053 32.1 3.1 44 302-345 62-110 (157)
85 PF14965 BRI3BP: Negative regu 41.5 1.5E+02 0.0033 27.8 8.0 47 91-155 19-65 (177)
86 PF01451 LMWPc: Low molecular 40.6 28 0.00061 29.9 3.0 34 310-343 1-39 (138)
87 TIGR00197 yjeF_nterm yjeF N-te 39.6 48 0.001 31.1 4.6 34 305-339 43-79 (205)
88 PLN02727 NAD kinase 39.3 1.2E+02 0.0026 35.4 8.3 26 225-250 268-293 (986)
89 PTZ00242 protein tyrosine phos 39.2 2.5E+02 0.0054 25.4 9.1 26 305-330 96-123 (166)
90 PRK01269 tRNA s(4)U8 sulfurtra 37.5 44 0.00095 35.5 4.5 36 307-343 177-214 (482)
91 PLN03049 pyridoxine (pyridoxam 37.5 45 0.00098 35.5 4.6 31 307-338 59-92 (462)
92 PRK10565 putative carbohydrate 36.1 52 0.0011 35.4 4.8 33 305-338 58-93 (508)
93 PF05706 CDKN3: Cyclin-depende 35.9 99 0.0021 28.8 5.9 91 231-331 64-159 (168)
94 PLN02918 pyridoxine (pyridoxam 34.0 1.1E+02 0.0025 33.3 6.9 31 307-338 135-168 (544)
95 KOG0333 U5 snRNP-like RNA heli 34.0 69 0.0015 35.1 5.2 38 305-343 515-552 (673)
96 TIGR02689 ars_reduc_gluta arse 32.3 80 0.0017 27.0 4.5 36 309-344 2-38 (126)
97 COG0062 Uncharacterized conser 31.8 87 0.0019 29.9 5.0 31 307-338 49-82 (203)
98 PF01488 Shikimate_DH: Shikima 31.8 79 0.0017 27.3 4.5 37 306-343 11-47 (135)
99 cd00079 HELICc Helicase superf 31.0 79 0.0017 25.6 4.2 37 306-343 27-63 (131)
100 TIGR00853 pts-lac PTS system, 29.8 67 0.0015 26.6 3.5 36 307-343 3-42 (95)
101 COG0034 PurF Glutamine phospho 28.1 87 0.0019 33.5 4.7 46 296-341 337-385 (470)
102 KOG0572 Glutamine phosphoribos 27.5 1.1E+02 0.0025 32.2 5.3 42 296-337 345-389 (474)
103 PF02302 PTS_IIB: PTS system, 27.4 80 0.0017 24.8 3.5 32 309-341 1-37 (90)
104 COG1576 Uncharacterized conser 27.2 1.9E+02 0.0042 26.6 6.2 44 301-345 61-109 (155)
105 PF07755 DUF1611: Protein of u 27.2 94 0.002 31.4 4.6 30 319-352 129-158 (301)
106 PRK00129 upp uracil phosphorib 27.1 1.3E+02 0.0028 28.2 5.4 75 306-380 123-202 (209)
107 PRK04837 ATP-dependent RNA hel 26.6 1.1E+02 0.0024 31.4 5.1 38 305-343 253-290 (423)
108 PRK07688 thiamine/molybdopteri 26.6 42 0.00091 34.1 2.1 33 225-258 278-316 (339)
109 TIGR00246 tRNA_RlmH_YbeA rRNA 26.4 1.9E+02 0.004 26.3 6.0 41 303-345 62-107 (153)
110 PRK11192 ATP-dependent RNA hel 26.4 1.2E+02 0.0026 31.1 5.5 38 305-343 243-280 (434)
111 smart00226 LMWPc Low molecular 26.0 86 0.0019 26.9 3.7 34 310-343 1-35 (140)
112 COG0301 ThiI Thiamine biosynth 25.6 94 0.002 32.5 4.4 25 309-333 177-201 (383)
113 TIGR01587 cas3_core CRISPR-ass 25.6 81 0.0018 31.3 3.9 39 305-343 220-259 (358)
114 COG2453 CDC14 Predicted protei 25.4 76 0.0017 29.0 3.4 29 305-333 103-134 (180)
115 COG2519 GCD14 tRNA(1-methylade 25.1 63 0.0014 32.0 2.9 56 239-339 165-220 (256)
116 PRK04537 ATP-dependent RNA hel 25.1 1E+02 0.0022 33.6 4.7 38 305-343 255-292 (572)
117 COG4575 ElaB Uncharacterized c 25.1 4.5E+02 0.0097 22.7 8.5 15 134-148 47-61 (104)
118 COG0513 SrmB Superfamily II DN 24.5 1.1E+02 0.0025 32.7 5.0 36 307-343 273-308 (513)
119 PRK09590 celB cellobiose phosp 24.1 89 0.0019 26.5 3.3 34 309-343 3-40 (104)
120 KOG0330 ATP-dependent RNA heli 23.9 91 0.002 33.0 3.9 38 305-343 298-335 (476)
121 PRK10310 PTS system galactitol 23.7 1E+02 0.0023 25.3 3.6 34 309-343 4-42 (94)
122 cd05565 PTS_IIB_lactose PTS_II 23.5 80 0.0017 26.6 2.9 34 309-343 2-39 (99)
123 PRK10499 PTS system N,N'-diace 23.5 97 0.0021 26.2 3.4 26 308-333 4-33 (106)
124 PF07217 Het-C: Heterokaryon i 23.2 5.5E+02 0.012 28.6 9.6 28 98-125 416-443 (606)
125 PRK10126 tyrosine phosphatase; 23.1 1.2E+02 0.0026 26.7 4.1 35 308-343 3-38 (147)
126 PRK11776 ATP-dependent RNA hel 23.1 1.2E+02 0.0025 31.6 4.6 38 305-343 240-277 (460)
127 PRK10590 ATP-dependent RNA hel 23.0 1.1E+02 0.0025 31.8 4.5 38 305-343 243-280 (456)
128 KOG0994 Extracellular matrix g 22.6 9.4E+02 0.02 29.4 11.7 21 156-176 1644-1664(1758)
129 PRK14665 mnmA tRNA-specific 2- 22.5 1.3E+02 0.0027 31.1 4.6 31 305-336 3-33 (360)
130 COG3599 DivIVA Cell division i 22.4 7E+02 0.015 23.9 10.0 42 65-106 22-63 (212)
131 PF00156 Pribosyltran: Phospho 22.2 1.6E+02 0.0034 24.3 4.5 33 305-337 86-121 (125)
132 TIGR00614 recQ_fam ATP-depende 22.2 1.1E+02 0.0023 32.2 4.2 38 305-343 224-261 (470)
133 PRK13530 arsenate reductase; P 21.8 1.6E+02 0.0035 25.6 4.6 36 308-343 4-40 (133)
134 COG0035 Upp Uracil phosphoribo 21.5 1.7E+02 0.0038 28.1 5.0 71 306-379 123-202 (210)
135 COG4822 CbiK Cobalamin biosynt 21.4 1.3E+02 0.0029 29.4 4.2 39 305-343 135-179 (265)
136 PF00782 DSPc: Dual specificit 21.3 1.4E+02 0.003 25.0 4.0 29 305-333 71-102 (133)
137 cd00133 PTS_IIB PTS_IIB: subun 21.3 90 0.002 23.3 2.6 25 309-333 1-30 (84)
138 cd05564 PTS_IIB_chitobiose_lic 21.2 96 0.0021 25.5 2.9 34 309-343 1-38 (96)
139 PRK11057 ATP-dependent DNA hel 21.2 1.2E+02 0.0026 33.2 4.4 38 305-343 234-271 (607)
140 PF13399 LytR_C: LytR cell env 21.1 1.7E+02 0.0037 23.2 4.3 29 307-335 3-33 (90)
141 cd00115 LMWPc Substituted upda 21.1 1.2E+02 0.0027 26.1 3.7 35 309-343 2-38 (141)
142 PF13344 Hydrolase_6: Haloacid 21.1 1.9E+02 0.0041 23.8 4.7 28 306-333 29-57 (101)
143 PF04122 CW_binding_2: Putativ 20.9 1.1E+02 0.0024 24.5 3.1 35 306-343 49-83 (92)
144 KOG1403 Predicted alanine-glyo 20.7 2.2E+02 0.0047 29.4 5.7 72 284-359 79-152 (452)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=1.2e-19 Score=149.67 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=82.3
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.|+++++.+++++++.+|||||++.||+.+|||| |+| ||++++...... + ..+.+.
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~g----A~~----ip~~~~~~~~~~-------~---------~~~~~~ 58 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKG----AVN----PDVDTFREFPFW-------L---------DENLDL 58 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEecc----ccC----CCcccHhHhHHH-------H---------Hhhhhh
Confidence 5899999999987789999999999999999999 999 999876431111 1 111123
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
+++++||+||++|.||..+++.|+++||+||++|.||+. +|.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~---~W~ 100 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL---KYL 100 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH---HHh
Confidence 789999999999999999999999999999999999999 775
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.79 E-value=2.3e-19 Score=150.08 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=82.3
Q ss_pred ccCHHHHHHHhhCC-CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 225 ELTPAQSLDLITAQ-NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 225 ~ISp~ea~~ll~~~-~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
.++++++.++++++ +.+|||||++.||..||||| |+| +|+.++..++.. +.
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpg----ain----ip~~~l~~~~~~-------------------l~- 62 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFDEYRKMTIPG----SVS----CPGAELVLRVGE-------------------LA- 62 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCC----cee----CCHHHHHHHHHh-------------------cC-
Confidence 69999999998765 57899999999999999999 999 998765432221 11
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCc-eEEccCcccccHHHHhcC
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKN-CWIVADGFSGRRGWLQSR 352 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~n-V~vL~GG~~gwraW~~aG 352 (391)
.+++++||+||.+|.||..+++.|+++||+| +++|.||+. +|..+|
T Consensus 63 ~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~---~W~~~g 109 (109)
T cd01533 63 PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ---GWTLAG 109 (109)
T ss_pred CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH---HHHhcC
Confidence 1568899999999999999999999999998 999999999 887764
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.77 E-value=8.6e-19 Score=146.42 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=88.0
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.++++++.+++++++.++||+|++.||..+|||| |+| +|+..+.+++. .+
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~g----A~~----ip~~~l~~~~~----------------------~~ 55 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPG----AFH----LTNDSLGAFMR----------------------QA 55 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCC----CeE----CCHHHHHHHHH----------------------hc
Confidence 6899999999987778999999999999999999 999 88765443211 13
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSY 358 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~ 358 (391)
+++++|++||.+|.++..++..|++.||+|+++|.||+. +|+..++|++..
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~---~w~~~~~~~~~~ 106 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE---AWRRTFPAEVAS 106 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH---HHHhcCCCccCC
Confidence 678999999999999999999999999999999999999 999999987653
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.5e-18 Score=142.25 Aligned_cols=97 Identities=20% Similarity=0.367 Sum_probs=84.8
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.++++|+.++++++ .+|||+|+++||..+|||| |+| +|+.++.... ..+
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~g----a~~----ip~~~~~~~~----------------------~~~ 51 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPDEYLRERIPG----ARL----VPLSQLESEG----------------------LPL 51 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCC----CEE----CChhHhcccc----------------------cCC
Confidence 58999999998865 8999999999999999999 999 9987765311 013
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCC
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGS 355 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv 355 (391)
+++++||+||++|.++..++..|+++||+|+++|.||+. +|...|+|+
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~---~W~~~~~~~ 99 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD---AWKAAGLPV 99 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH---HHHHCcCCC
Confidence 778999999999999999999999999999999999999 999888864
No 5
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.77 E-value=2e-18 Score=147.21 Aligned_cols=104 Identities=24% Similarity=0.430 Sum_probs=82.8
Q ss_pred cCHHHHHHHhhC-CCcEEEEcCChhhHh-hcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 226 LTPAQSLDLITA-QNHLMIDIRSEKDKD-KAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 226 ISp~ea~~ll~~-~~~vLIDVRs~~Ef~-~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
|+++++.+++++ ++.++||||++.||+ .||||| |+| +|+.++... ..+.++. ..+.. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpg----A~~----ip~~~~~~~----~~~~~~~-~~l~~-----~-- 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPD----AVH----VAWQVYPDM----EINPNFL-AELEE-----K-- 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCC----cee----cchhhcccc----ccCHHHH-HHHHh-----h--
Confidence 588999999987 478999999999999 999999 999 998776431 1111111 11111 1
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
.+++++||+||++|.+|..+++.|+++||+|++.|.|||++|++|.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~ 106 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAA 106 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCC
Confidence 2678999999999999999999999999999999999999995543
No 6
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1.4e-18 Score=143.42 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=82.3
Q ss_pred CHHHHHHHhh-CCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCC
Q 016309 227 TPAQSLDLIT-AQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRIN 305 (391)
Q Consensus 227 Sp~ea~~ll~-~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~ 305 (391)
+++++.++++ +++.+|||+|++.||..||||| |+| +|+.++.+. ...+++.++..+... .++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpg----A~~----ip~~~~~~~---~~~~~~~~~~~~~~~------~~~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPG----AIN----IPLSSLPDA---LALSEEEFEKKYGFP------KPS 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCC----cEE----echHHhhhh---hCCCHHHHHHHhccc------CCC
Confidence 5788888887 6679999999999999999999 999 998776432 122333333333221 236
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
++++||+||.+|.+|..+++.|..+||+||++|.||+. +|.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~---~W~ 105 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL---DWA 105 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH---HHc
Confidence 78999999999999999999999999999999999999 774
No 7
>PLN02160 thiosulfate sulfurtransferase
Probab=99.75 E-value=4.4e-18 Score=149.58 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=88.9
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccc--cccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhh
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSA--KNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~A--vN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~ 302 (391)
.++++++.++++++ .+|||||++.||..||||| | +| +|+..+.. . ..+.+++++.. +..
T Consensus 16 ~i~~~e~~~~~~~~-~~lIDVR~~~E~~~ghIpg----A~~in----iP~~~~~~-~-~~l~~~~~~~~------~~~-- 76 (136)
T PLN02160 16 SVDVSQAKTLLQSG-HQYLDVRTQDEFRRGHCEA----AKIVN----IPYMLNTP-Q-GRVKNQEFLEQ------VSS-- 76 (136)
T ss_pred EeCHHHHHHHHhCC-CEEEECCCHHHHhcCCCCC----cceec----ccchhcCc-c-cccCCHHHHHH------HHh--
Confidence 68999999988754 6899999999999999999 9 67 88754321 1 11222222211 111
Q ss_pred cCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 303 kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
.++++++||+||++|.||..++..|.+.||++|++|.|||. +|.+.|+|++...
T Consensus 77 ~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~---~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL---AWVDHSFPINQEE 130 (136)
T ss_pred ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH---HHhhCCCCccccc
Confidence 13678999999999999999999999999999999999999 9999999997654
No 8
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.75 E-value=3.6e-18 Score=145.03 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=90.5
Q ss_pred cCHHHHHHHhhCCCcEEEEcCCh-------hhHhhcCCCCCCccccccccccCCCCcchh---hhhhhhchHHHHHHHHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSE-------KDKDKAGIPRLPPSAKNRMVSIPLEELPSK---LKGLVRNAKKVEAEIVA 295 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~-------~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~---l~~ll~n~~~le~~l~a 295 (391)
++++++.+++++++.+|||+|++ .+|..+|||| |+| +|+.++... ..+.+++.++++..+..
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~g----a~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPG----AVF----FDLDEDLDDKSPGPHMLPSPEEFAELLGS 73 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCC----CEE----cChhhccccCCCCCCCCCCHHHHHHHHHH
Confidence 78999999998777899999999 9999999999 999 998765432 23455666666555543
Q ss_pred HHHhhhhcCCCCCEEEEEeCC-CchHHHHHHHHHHcCCCceEEccCcccccHHHHhcC
Q 016309 296 LKISYLKRINKGSKIIIMDSY-SDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352 (391)
Q Consensus 296 ~~I~~L~kl~kd~~IVVyC~s-G~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aG 352 (391)
.+ ++++++||+||++ |.++..+++.|+.+||+||++|+||++ +|.++|
T Consensus 74 ~~------~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~~~g 122 (122)
T cd01448 74 LG------ISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ---AWKAEG 122 (122)
T ss_pred cC------CCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH---HHHhCc
Confidence 22 3789999999999 589999999999999999999999999 887654
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.75 E-value=2.5e-18 Score=140.44 Aligned_cols=92 Identities=16% Similarity=0.346 Sum_probs=76.0
Q ss_pred cCHHHHHHHhhCC--CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 226 LTPAQSLDLITAQ--NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 226 ISp~ea~~ll~~~--~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
|+++|+.++++++ +.+|||||+++||..||||| |+| +|+.++....... ..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipg----a~~----ip~~~l~~~~~~~-------------------~~ 53 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPG----FRH----TPGGQLVQETDHF-------------------AP 53 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCC----cEe----CCHHHHHHHHHHh-------------------cc
Confidence 5789999998764 47899999999999999999 999 9876543321111 11
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
.++++||+||.+|.+|..++..|+.+||+ +++|+||+. +|.
T Consensus 54 -~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~---~W~ 94 (95)
T cd01534 54 -VRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLA---AAL 94 (95)
T ss_pred -cCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHH---Hhc
Confidence 35789999999999999999999999998 999999999 774
No 10
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3e-18 Score=149.20 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=96.5
Q ss_pred CccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 224 GELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 224 g~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
..++.+++.++++.++.++||||+++||.+||+|. ++| ||+...+.. ..++|++|. .++...+.
T Consensus 23 ~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~----siN----iPy~~~~~~--~~l~~~eF~------kqvg~~kp 86 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPA----SIN----IPYMSRPGA--GALKNPEFL------KQVGSSKP 86 (136)
T ss_pred EEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcc----eEe----ccccccccc--cccCCHHHH------HHhcccCC
Confidence 37899999999998889999999999999999999 999 999665432 345677776 34444444
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCc
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSD 356 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~ 356 (391)
+.++.|||+|.+|.||..+...|..+||+||.++.|||. +|.+.+++..
T Consensus 87 -~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~---~W~~k~~~~~ 135 (136)
T KOG1530|consen 87 -PHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYL---AWVDKGGPKK 135 (136)
T ss_pred -CCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHH---HHHHccCCCC
Confidence 778899999999999999999999999999999999999 9999888753
No 11
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.74 E-value=4.3e-18 Score=140.38 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=78.9
Q ss_pred cCHHHHHHHhhCC--CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 226 LTPAQSLDLITAQ--NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 226 ISp~ea~~ll~~~--~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
|+++++.++++.+ +.++||+|+++||..+|||| |+| +|+.++.++... +.+
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~g----a~~----ip~~~~~~~~~~-------------------~~~ 54 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPG----FLH----LPMSEIPERSKE-------------------LDS 54 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCC----CEe----cCHHHHHHHHHH-------------------hcc
Confidence 7899999999865 58999999999999999999 999 998665432211 111
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHH
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRG 347 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwra 347 (391)
.+++++||+||++|.+|..+++.|.++||+++++|+||+.+|..
T Consensus 55 ~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 55 DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 24689999999999999999999999999999999999994433
No 12
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.74 E-value=8.8e-18 Score=138.11 Aligned_cols=98 Identities=20% Similarity=0.360 Sum_probs=79.0
Q ss_pred cCHHHHHHHhhCC-CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 226 LTPAQSLDLITAQ-NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 226 ISp~ea~~ll~~~-~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
|+++++.++++++ +.+|||||+++||+.||||| |+| +|+.++....... .+. .+..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~g----a~~----ip~~~~~~~~~~~------~~~--------~~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDG----ENN----TPYFDPYFDFLEI------EED--------ILDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCC----Ccc----cccccchHHHHHh------hHH--------HHhhC
Confidence 5789999988764 58999999999999999999 999 9998765321000 000 01224
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
+++++||+||.+|.+|..++..|+++||+ +++|.|||. +|.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~---~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMK---AWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHH---hhc
Confidence 78999999999999999999999999998 999999999 664
No 13
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.74 E-value=3.5e-18 Score=143.83 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=86.6
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHhh-----------cCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKDK-----------AGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIV 294 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~~-----------gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~ 294 (391)
++++++.+++++++.+|||+|+..||.. ||||| |+| +|+.++.... ..++++++++..+.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpg----A~~----~p~~~~~~~~-~~~~~~~~~~~~~~ 71 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPG----AVN----IPWTSLLDED-GTFKSPEELRALFA 71 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCC----Ccc----cChHHhcCCC-CCcCCHHHHHHHHH
Confidence 4788999988776789999999999987 99999 999 9987654322 23455666655554
Q ss_pred HHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 295 ALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 295 a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
..+ ++++++||+||++|.+|..+++.|+.+||+|+++|+||+. +|.
T Consensus 72 ~~~------~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~---~W~ 117 (118)
T cd01449 72 ALG------ITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS---EWG 117 (118)
T ss_pred HcC------CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH---Hhc
Confidence 433 3689999999999999999999999999999999999999 774
No 14
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.74 E-value=9.7e-18 Score=151.66 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=88.0
Q ss_pred HHhcCCCCccCHHHHHHHhhCCCcEEEEcCChh----hHhhc---------CCCCCCccccccccccCCC---Ccchhhh
Q 016309 217 FSLRGYKGELTPAQSLDLITAQNHLMIDIRSEK----DKDKA---------GIPRLPPSAKNRMVSIPLE---ELPSKLK 280 (391)
Q Consensus 217 ~~~r~~~g~ISp~ea~~ll~~~~~vLIDVRs~~----Ef~~g---------HIPGlp~~AvN~~i~IPl~---~L~~~l~ 280 (391)
....++. .|+++|+.+++++++.+|||||+++ ||..| |||| |+| +|+. ++....
T Consensus 30 ~~~~~~~-~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPG----Av~----ip~~~~~~l~~~~- 99 (162)
T TIGR03865 30 ATLKGAR-VLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPG----SLW----LPNTGYGNLAPAW- 99 (162)
T ss_pred cccCCcc-ccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCC----cEE----ecccCCCCCCCch-
Confidence 3555665 8999999999988889999999876 45544 9999 999 8753 332210
Q ss_pred hhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCc-hHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCC
Q 016309 281 GLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSD-SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGS 355 (391)
Q Consensus 281 ~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~-rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv 355 (391)
...+...+ ..+...+++++||+||++|. +|..+++.|+++||+||++|+|||. +|+.+|+|+
T Consensus 100 -----~~~~~~~l-----~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~---aW~~aG~Pv 162 (162)
T TIGR03865 100 -----QAYFRRGL-----ERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD---GWQAAGLPL 162 (162)
T ss_pred -----hHHHHHHH-----HHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH---HHHHcCCCC
Confidence 01111112 22222368999999999996 8999999999999999999999999 999999985
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.72 E-value=1.7e-17 Score=134.44 Aligned_cols=91 Identities=20% Similarity=0.405 Sum_probs=79.0
Q ss_pred cCHHHHHHHhhC-CCcEEEEcCChhhHhh--cCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhh
Q 016309 226 LTPAQSLDLITA-QNHLMIDIRSEKDKDK--AGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302 (391)
Q Consensus 226 ISp~ea~~ll~~-~~~vLIDVRs~~Ef~~--gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~ 302 (391)
|+++++.+++++ .+.++||+|++.||.. +|||| |+| +|+.++.+.. .
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~g----a~~----ip~~~~~~~~----------------------~ 51 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPG----AIH----LDEDSLDDWL----------------------G 51 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCC----Cee----CCHHHHHHHH----------------------h
Confidence 788999998876 4689999999999999 99999 999 9987654321 1
Q ss_pred cCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 303 kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
.++++++||+||.+|.+|..+++.|++.||+|+++|.||+. +|.
T Consensus 52 ~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~---~w~ 95 (96)
T cd01444 52 DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE---AWR 95 (96)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH---Hhc
Confidence 13789999999999999999999999999999999999999 774
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.71 E-value=2e-17 Score=135.43 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=80.9
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhH-hhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDK-DKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef-~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
|+++++.+++++++.+|||+|++.+| ..||||| |+| +|+..+..+..... .+. ...+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpg----a~~----ip~~~~~~~~~~~~--------~~~------~~~~ 58 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPG----AFH----APRGMLEFWADPDS--------PYH------KPAF 58 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCC----cEE----cccchhhhhcCccc--------ccc------ccCC
Confidence 57899999988777899999999998 5799999 999 99866543211100 000 0124
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcC
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aG 352 (391)
+++++||+||.+|.++..+++.|+++||+|+++|+||+. +|..+|
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~---~w~~~g 103 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK---DWKEAG 103 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH---HHhhcC
Confidence 789999999999999999999999999999999999999 886553
No 17
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.71 E-value=2.3e-17 Score=141.23 Aligned_cols=107 Identities=22% Similarity=0.352 Sum_probs=85.5
Q ss_pred ccCHHHHHHHhhC-CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 225 ELTPAQSLDLITA-QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 225 ~ISp~ea~~ll~~-~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
.|+++++.+++++ ++++|||+|+++||..+|||| |+| ||+.++.++...+... .+. -..
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpg----ai~----ip~~~~~~~~~~~~~~------~~~------~~~ 68 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPE----AIN----IPLSELLSKAAELKSL------QEL------PLD 68 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCC----CeE----ccHHHHhhhhhhhhhh------hhc------ccc
Confidence 6899999999876 568899999999999999999 999 9987765432221100 000 012
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCC-CceEEccCcccccHHHHhcCCC
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGF-KNCWIVADGFSGRRGWLQSRLG 354 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf-~nV~vL~GG~~gwraW~~aGLp 354 (391)
++++++||+||++|.+|..+++.|+++|| +|++.|+|||. +|.....+
T Consensus 69 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~---~W~~~~~~ 117 (122)
T cd01526 69 NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK---AWADKVDP 117 (122)
T ss_pred cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH---HHHHHhCc
Confidence 37899999999999999999999999999 79999999999 88766543
No 18
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.71 E-value=4e-17 Score=137.14 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=83.1
Q ss_pred CccCHHHHHHHhhCC--CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhh
Q 016309 224 GELTPAQSLDLITAQ--NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYL 301 (391)
Q Consensus 224 g~ISp~ea~~ll~~~--~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L 301 (391)
..++++++.+++.++ +.+|||+|++.+|..||||| |+| +|+..+..+. +
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpg----A~~----ip~~~l~~~~---------------------~ 58 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPG----AIN----LPHREICENA---------------------T 58 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCC----CEe----CCHHHhhhHh---------------------h
Confidence 368999999998753 58999999999999999999 999 8876653210 1
Q ss_pred hcCCCCCEEEEEeCCCc--hHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCC
Q 016309 302 KRINKGSKIIIMDSYSD--SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGS 355 (391)
Q Consensus 302 ~kl~kd~~IVVyC~sG~--rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv 355 (391)
..++++++||+||++|. ++..+++.|+++||+ +++|+||+. +|...|+|+
T Consensus 59 ~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~---~W~~~g~~~ 110 (110)
T cd01521 59 AKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLD---WWKREGYAT 110 (110)
T ss_pred hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHH---HHHHCCCCC
Confidence 12478999999999874 899999999999995 999999999 999999874
No 19
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.70 E-value=3.3e-17 Score=135.23 Aligned_cols=99 Identities=21% Similarity=0.331 Sum_probs=77.5
Q ss_pred cCHHHHHHHhhCC--CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcch---hhhhhhhchHHHHHHHHHHHHhh
Q 016309 226 LTPAQSLDLITAQ--NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPS---KLKGLVRNAKKVEAEIVALKISY 300 (391)
Q Consensus 226 ISp~ea~~ll~~~--~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~---~l~~ll~n~~~le~~l~a~~I~~ 300 (391)
|+++|+.+++.++ +.+|||+|++.||..||||| |+| +|+.++.. .+.. +.+.. .+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpg----A~~----ip~~~~~~~~~~~~~-~~~~~----~~------- 60 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEG----SIN----IPFSSVFLKEGELEQ-LPTVP----RL------- 60 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCC----CEe----CCHHHhccccccccc-ccchH----HH-------
Confidence 6889999998763 57999999999999999999 999 99865421 1111 11100 11
Q ss_pred hhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 301 LKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 301 L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
.+ .++++||+||.+|.+|..+++.|+.+||+||++|.||+. +|+
T Consensus 61 -~~-~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~---a~~ 104 (105)
T cd01525 61 -EN-YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN---ALK 104 (105)
T ss_pred -Hh-hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH---Hhc
Confidence 11 357899999999999999999999999999999999999 664
No 20
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.70 E-value=9.5e-17 Score=138.77 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=78.5
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhh--hhhhhch--------------HHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKL--KGLVRNA--------------KKV 289 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l--~~ll~n~--------------~~l 289 (391)
||++|+.++++ ++.+|||||++.||..||||| |+| ||+..+..+. ....++. ..+
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpg----Ain----ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPG----AIN----LPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCC----cEE----ccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68899999987 678999999999999999999 999 9996543211 0000000 111
Q ss_pred HHHHHHHHHhhhhcCCCCCEEEEEeC-CCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 290 EAEIVALKISYLKRINKGSKIIIMDS-YSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 290 e~~l~a~~I~~L~kl~kd~~IVVyC~-sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
+..+... .+ ..++++++||+||. +|.||..+++.|+.+|| ++++|+||+. +|+
T Consensus 72 ~~~~~~~--~~-~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~---aw~ 125 (128)
T cd01520 72 KRILNEA--WE-ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK---AYR 125 (128)
T ss_pred HHHHHHH--HH-hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH---HHH
Confidence 1111110 00 13588999999997 68899999999999999 5999999999 664
No 21
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.70 E-value=5.4e-17 Score=133.47 Aligned_cols=107 Identities=28% Similarity=0.486 Sum_probs=78.4
Q ss_pred CHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCC
Q 016309 227 TPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINK 306 (391)
Q Consensus 227 Sp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~k 306 (391)
||+|+.+++.+++.+|||+|++.+|..||||| |+| +|+..+.. .........+...+. ....++++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~g----a~~----i~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPG----AVN----IPFPSLDP--DEPSLSEDKLDEFLK----ELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETT----EEE----EEGGGGSS--SSSBCHHHHHHHHHH----HHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCC----Ccc----cccccccc--ccccccccccccccc----cccccccc
Confidence 68999999976789999999999999999999 999 88854410 001111111111111 12233578
Q ss_pred CCEEEEEeCCCchHHHHHHH-----HHHcCCCceEEccCcccccHHHHh
Q 016309 307 GSKIIIMDSYSDSAKIVARV-----LTSLGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~-----L~~lGf~nV~vL~GG~~gwraW~~ 350 (391)
+++||+||..|.++..++.. |.++||++|++|+|||+ +|.+
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~---~w~~ 112 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE---AWKA 112 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH---HHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH---HHhc
Confidence 89999999988888777766 89999999999999999 7765
No 22
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.69 E-value=4.2e-17 Score=131.97 Aligned_cols=89 Identities=28% Similarity=0.402 Sum_probs=75.4
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCC
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRIN 305 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~ 305 (391)
++++|+.+++ .++.++||+|++++|..||||| |+| +|++++..+. ..++
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipg----A~~----ip~~~~~~~~----------------------~~~~ 49 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKG----AIN----IPLDELRDRL----------------------NELP 49 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCC----CEe----CCHHHHHHHH----------------------HhcC
Confidence 4688999988 4567899999999999999999 999 8876543211 1136
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
++++||+||.+|.++..+++.|+++|| ++++|+||+. +|+
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~---~w~ 89 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK---TYS 89 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH---Hhc
Confidence 788999999999999999999999999 8999999999 664
No 23
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.69 E-value=6.2e-17 Score=128.97 Aligned_cols=99 Identities=23% Similarity=0.426 Sum_probs=75.9
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCC
Q 016309 237 AQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSY 316 (391)
Q Consensus 237 ~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~s 316 (391)
+++.+|||+|++.||..+|||| |+| +|+..+...... .... .++..+ .....+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~g----a~~----i~~~~~~~~~~~-~~~~-~~~~~~------~~~~~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPG----AVN----IPLSELLDRRGE-LDIL-EFEELL------KRLGLDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCC----cee----CCHHHhccCCCC-cCHH-HHHHHH------HHcCCCCCCeEEEEeCC
Confidence 3568999999999999999999 999 998765432111 1111 111111 12234789999999999
Q ss_pred CchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCC
Q 016309 317 SDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLG 354 (391)
Q Consensus 317 G~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLp 354 (391)
|.++..+++.|++.||+++++|.|||. +|...+++
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~---~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYK---EWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHH---HHHhcCCC
Confidence 999999999999999999999999999 99887754
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.66 E-value=1.7e-16 Score=136.56 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=78.0
Q ss_pred ccCHHHHHHHhhCC------CcEEEEcCChhhHhhcCCCCCCccccccccccCCC-CcchhhhhhhhchHHHHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQ------NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLE-ELPSKLKGLVRNAKKVEAEIVALK 297 (391)
Q Consensus 225 ~ISp~ea~~ll~~~------~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~-~L~~~l~~ll~n~~~le~~l~a~~ 297 (391)
.|+++|+.++++++ +.+|||||++.||..||||| |+| ||+. .+...+... .
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~g----A~~----ip~~~~l~~~~~~~--------------~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKG----AVN----LSTKDELEEFFLDK--------------P 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCC----CEe----CCcHHHHHHHHHHh--------------h
Confidence 58999999998763 68999999999999999999 999 9985 343211000 0
Q ss_pred HhhhhcCCCCCEEEEEeC-CCchHHHHHHHHHHc------------CCCceEEccCcccccHHH
Q 016309 298 ISYLKRINKGSKIIIMDS-YSDSAKIVARVLTSL------------GFKNCWIVADGFSGRRGW 348 (391)
Q Consensus 298 I~~L~kl~kd~~IVVyC~-sG~rS~~aA~~L~~l------------Gf~nV~vL~GG~~gwraW 348 (391)
..+ .++++++||+||. +|.||..+++.|+++ ||++||+|+|||. +|
T Consensus 61 -~~~-~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~---~f 119 (121)
T cd01530 61 -GVA-SKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK---NF 119 (121)
T ss_pred -ccc-ccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH---hh
Confidence 001 1378999999997 899999999999985 9999999999999 66
No 25
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.66 E-value=2.9e-16 Score=152.82 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=96.6
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCC----------hhhHhhcCCCCCCccccccccccCCCCcchh---hhhhhhchHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRS----------EKDKDKAGIPRLPPSAKNRMVSIPLEELPSK---LKGLVRNAKKVEA 291 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs----------~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~---l~~ll~n~~~le~ 291 (391)
.++++++.+++++++.+|||+|+ +.+|..||||| |+| +|+..+... +...+++++.++.
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpG----A~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPG----AVF----FDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCC----CEE----cCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 48999999999988899999996 78999999999 999 887554321 2234455666666
Q ss_pred HHHHHHHhhhhcCCCCCEEEEEeCCCc-hHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 292 EIVALKISYLKRINKGSKIIIMDSYSD-SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 292 ~l~a~~I~~L~kl~kd~~IVVyC~sG~-rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
.+...++ +++++||+||.+|. .+.++++.|+.+||+||++|+||+. +|..+|+|++...
T Consensus 78 ~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~---~W~~~g~p~~~~~ 137 (281)
T PRK11493 78 AMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA---GWQRDDLLLEEGA 137 (281)
T ss_pred HHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH---HHHHcCCCccCCC
Confidence 6666554 88999999999876 5778899999999999999999999 9999999887653
No 26
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.65 E-value=2.3e-16 Score=128.65 Aligned_cols=86 Identities=23% Similarity=0.407 Sum_probs=68.5
Q ss_pred HHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEE
Q 016309 233 DLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIII 312 (391)
Q Consensus 233 ~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVV 312 (391)
.++++++.+|||+|++.||..+|||| ++| +|+..+.... . ..+ .+++++||+
T Consensus 4 ~~~~~~~~~liDvR~~~e~~~~hi~g----a~~----ip~~~~~~~~-------------~-----~~~--~~~~~~ivl 55 (92)
T cd01532 4 ALLAREEIALIDVREEDPFAQSHPLW----AAN----LPLSRLELDA-------------W-----VRI--PRRDTPIVV 55 (92)
T ss_pred HhhcCCCeEEEECCCHHHHhhCCccc----Cee----CCHHHHHhhh-------------H-----hhC--CCCCCeEEE
Confidence 34556778999999999999999999 999 8875532100 0 000 145889999
Q ss_pred EeCCCch--HHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 313 MDSYSDS--AKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 313 yC~sG~r--S~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
||.+|.+ |..+++.|++.||++|++|+||+. +|.
T Consensus 56 ~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~---~W~ 91 (92)
T cd01532 56 YGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ---GWR 91 (92)
T ss_pred EeCCCCchHHHHHHHHHHHcCccCEEEccCCHH---HHc
Confidence 9999876 689999999999999999999999 664
No 27
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.65 E-value=2.8e-16 Score=128.44 Aligned_cols=86 Identities=22% Similarity=0.392 Sum_probs=69.1
Q ss_pred CCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCC
Q 016309 237 AQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSY 316 (391)
Q Consensus 237 ~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~s 316 (391)
+++.+|||+|++.||..+|||| |+| +|+.++... ...++ . +.+.+++++||+||.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpg----A~~----ip~~~~~~~-------~~~~~----~-----~~~~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPG----KRS----IPGAALVLR-------SQELQ----A-----LEAPGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCC----cEe----CCHHHhcCC-------HHHHH----H-----hhcCCCCCCEEEEeCC
Confidence 3568999999999999999999 999 987654321 11111 0 1224778999999999
Q ss_pred CchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 317 SDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 317 G~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
|.++..+++.|+++||+||++|+||+. +|.
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~---~W~ 95 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTS---AWV 95 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHH---Hhc
Confidence 999999999999999999999999999 664
No 28
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.63 E-value=6.4e-16 Score=153.49 Aligned_cols=117 Identities=18% Similarity=0.297 Sum_probs=96.5
Q ss_pred ccCHHHHHHHhhCCCcEEEEcC--------C-hhhHhhcCCCCCCccccccccccCCCCcchh---hhhhhhchHHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIR--------S-EKDKDKAGIPRLPPSAKNRMVSIPLEELPSK---LKGLVRNAKKVEAE 292 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVR--------s-~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~---l~~ll~n~~~le~~ 292 (391)
.|+++++.+++++++.+|||+| + .++|.+||||| |+| ++++++... ....+++++.++..
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPg----Ai~----i~~~~~~~~~~~~~~~lp~~~~~~~~ 94 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPG----ALF----FDLDGISDRTTDLPHMLPSEEAFAAA 94 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCC----Cee----cCHHHhcCCCCCcCCCCCCHHHHHHH
Confidence 6999999999988889999996 3 37899999999 999 887654332 23455666777777
Q ss_pred HHHHHHhhhhcCCCCCEEEEEeCCCc-hHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCccc
Q 016309 293 IVALKISYLKRINKGSKIIIMDSYSD-SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSY 358 (391)
Q Consensus 293 l~a~~I~~L~kl~kd~~IVVyC~sG~-rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~ 358 (391)
+..+++ +++++||+||..|. .+.++++.|+.+||+||++|+||+. +|..+|+|++..
T Consensus 95 l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~---~W~~~G~pv~~~ 152 (320)
T PLN02723 95 VSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP---KWRASGYDVESS 152 (320)
T ss_pred HHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH---HHHHcCCCcccC
Confidence 766554 78999999998885 5678999999999999999999999 999999998764
No 29
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.63 E-value=5.9e-16 Score=122.07 Aligned_cols=87 Identities=23% Similarity=0.399 Sum_probs=72.5
Q ss_pred HHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEE
Q 016309 231 SLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKI 310 (391)
Q Consensus 231 a~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~I 310 (391)
+.+++++++.+|||+|++.||+.+|||| |+| +|+..+.... .....+++++|
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~g----a~~----~~~~~~~~~~--------------------~~~~~~~~~~v 53 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPG----AIN----IPLSELEERA--------------------ALLELDKDKPI 53 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCC----CEe----cchHHHhhHH--------------------HhhccCCCCeE
Confidence 4455666789999999999999999999 999 9987654311 01123789999
Q ss_pred EEEeCCCchHHHHHHHHHHcCCCceEEccCccccc
Q 016309 311 IIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR 345 (391)
Q Consensus 311 VVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gw 345 (391)
|+||..|.++..+++.|++.||+++++|.|||++|
T Consensus 54 v~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w 88 (89)
T cd00158 54 VVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAW 88 (89)
T ss_pred EEEeCCCchHHHHHHHHHHhCcccEEEecCChhhc
Confidence 99999999999999999999999999999999943
No 30
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.63 E-value=6e-16 Score=136.39 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=86.8
Q ss_pred cCHHHHHHHhh----CCCcEEEEcCCh--------hhHhh------------cCCCCCCccccccccccCCCCcch---h
Q 016309 226 LTPAQSLDLIT----AQNHLMIDIRSE--------KDKDK------------AGIPRLPPSAKNRMVSIPLEELPS---K 278 (391)
Q Consensus 226 ISp~ea~~ll~----~~~~vLIDVRs~--------~Ef~~------------gHIPGlp~~AvN~~i~IPl~~L~~---~ 278 (391)
+|++++.++++ +++.+|||+|.. ++|.. ||||| |+| +|+.++.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPg----Av~----~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPG----ASF----FDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCC----CEe----eCHHHhhCcCCC
Confidence 57889999988 467899999987 89988 99999 999 88754422 1
Q ss_pred hhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCC---CchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 279 LKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSY---SDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 279 l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~s---G~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
....+++++.++..+...+| +++++||+||.. |..+.++++.|+.+||+||++|+||+. +|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~---~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF---EWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH---Hhh
Confidence 22345566677777766555 889999999986 678999999999999999999999999 774
No 31
>PRK01415 hypothetical protein; Validated
Probab=99.63 E-value=8e-16 Score=148.17 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=84.0
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.|+|+++.+++++++.++||||++.||+.||||| |+| +|...+.+.... ++ ....+
T Consensus 113 ~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~g----Ain----ip~~~f~e~~~~-------~~---------~~~~~ 168 (247)
T PRK01415 113 YIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKS----AIN----PNTKTFKQFPAW-------VQ---------QNQEL 168 (247)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCC----CCC----CChHHHhhhHHH-------Hh---------hhhhh
Confidence 5999999999998889999999999999999999 999 998765431110 00 01123
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcC
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aG 352 (391)
+++++|++||.+|.||..++..|+++||+|||.|.||+. +|.+..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~---~w~~~~ 213 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL---QYLEDT 213 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH---HHHHhc
Confidence 789999999999999999999999999999999999999 776543
No 32
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.62 E-value=5.2e-16 Score=157.06 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=93.6
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.|+++++.+++++ +.++||+|+++||..||||| |+| +|+.++..++.+. ..
T Consensus 4 ~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpg----Ai~----ip~~~l~~~~~~~--------------------~~ 54 (376)
T PRK08762 4 EISPAEARARAAQ-GAVLIDVREAHERASGQAEG----ALR----IPRGFLELRIETH--------------------LP 54 (376)
T ss_pred eeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCC----CEE----CCHHHHHHHHhhh--------------------cC
Confidence 6899999999875 48999999999999999999 999 9986554322111 02
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc-cCceeccCCcccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN-FSFTEVLSPSRVI 372 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~-~s~~el~~~sr~~ 372 (391)
+++++||+||++|.+|..+++.|+++||+||++|+|||. +|...|+|++... .+..++-.=+|.+
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~---~W~~~g~p~~~~~~~s~~~~~~y~r~i 120 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFS---AWKDAGLPLERPRLLTDEQDERYSRHL 120 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHH---HHHhcCCccccccCCCHHHHHHHHHhc
Confidence 679999999999999999999999999999999999999 9999999987665 4444443333443
No 33
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.62 E-value=9.8e-16 Score=136.17 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=78.5
Q ss_pred HHHHhhCC-CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCE
Q 016309 231 SLDLITAQ-NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSK 309 (391)
Q Consensus 231 a~~ll~~~-~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~ 309 (391)
+.+++.++ +.+|||||++.+|+.+|||| |+| +|.+++...+ ..++++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpg----Ai~----~~~~~l~~~l----------------------~~l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPG----AWW----VLRAQLAQAL----------------------EKLPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCC----cee----CCHHHHHHHH----------------------HhcCCCCC
Confidence 34555443 47999999999999999999 999 7664443211 11356889
Q ss_pred EEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 310 IIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 310 IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
||+||.+|.+|..+++.|+..||++|++|.||+. +|+..|+|+++-.
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~---aW~~~g~pl~~~~ 98 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA---AWIAAGLPVESGE 98 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH---HHHHCCCCcccCC
Confidence 9999999999999999999999999999999999 9999999987643
No 34
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.62 E-value=1.1e-15 Score=163.80 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=97.7
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcc---hhhhhhhhchHHHHHHHHHHHHhhh
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELP---SKLKGLVRNAKKVEAEIVALKISYL 301 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~---~~l~~ll~n~~~le~~l~a~~I~~L 301 (391)
.|+++|+.+++++++.+|||+|++++|..||||| |+| ++++.+. ....+++++++.++..+..+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPG----Av~----i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI--- 78 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRG----ARF----VDPKRTQLGKPPAPGLLPDTADLEQLFGELGH--- 78 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCC----cEE----cChhHhhccCCCCCCCCCCHHHHHHHHHHcCC---
Confidence 5999999999998889999999999999999999 999 8875321 1123455666677766666554
Q ss_pred hcCCCCCEEEEEeCCC-chHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCccc
Q 016309 302 KRINKGSKIIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSY 358 (391)
Q Consensus 302 ~kl~kd~~IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~ 358 (391)
+++++||+||++| .++.+++|.|+.+||++|++|+||+. +|..+|+|+.+.
T Consensus 79 ---~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~---aW~~ag~p~~~~ 130 (610)
T PRK09629 79 ---NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL---AWEAQALPLSTD 130 (610)
T ss_pred ---CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH---HHHHcCCccccC
Confidence 8899999999987 58889999999999999999999999 999999987543
No 35
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3e-15 Score=123.42 Aligned_cols=101 Identities=22% Similarity=0.384 Sum_probs=81.7
Q ss_pred CHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCC
Q 016309 227 TPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINK 306 (391)
Q Consensus 227 Sp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~k 306 (391)
.......+...++.++||||++.||+.+|||+ +++| +|..++........ +++
T Consensus 8 ~~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~---~~~~----ip~~~~~~~~~~~~--------------------~~~ 60 (110)
T COG0607 8 SEDEAALLLAGEDAVLLDVREPEEYERGHIPG---AAIN----IPLSELKAAENLLE--------------------LPD 60 (110)
T ss_pred CHHHHHHhhccCCCEEEeccChhHhhhcCCCc---ceee----eecccchhhhcccc--------------------cCC
Confidence 33444444455679999999999999999998 2566 99988765321110 268
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcc
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDS 357 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s 357 (391)
+++||+||++|.||..++..|+++||++++++.||+. +|...++++..
T Consensus 61 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~---~w~~~~~~~~~ 108 (110)
T COG0607 61 DDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID---AWKGAGLPLVR 108 (110)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH---HHHhcCCCccc
Confidence 9999999999999999999999999999889999999 99999988754
No 36
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.60 E-value=1.8e-15 Score=127.45 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=76.5
Q ss_pred ccCHHHHHHHhhC--CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhh
Q 016309 225 ELTPAQSLDLITA--QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302 (391)
Q Consensus 225 ~ISp~ea~~ll~~--~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~ 302 (391)
.|+++++.+++.+ ++.++||||++ ||..+|||| |+| +|+.++...+....+ ..
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~g----A~~----ip~~~l~~~~~~~~~----------------~~ 57 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKG----SWH----YPSTRFKAQLNQLVQ----------------LL 57 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCC----CEe----cCHHHHhhCHHHHHH----------------HH
Confidence 5899999999876 45789999999 999999999 999 998776543222111 01
Q ss_pred cCCCCCEEEEEeC-CCchHHHHHHHHHH--------cCCCceEEccCcccccHHHHh
Q 016309 303 RINKGSKIIIMDS-YSDSAKIVARVLTS--------LGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 303 kl~kd~~IVVyC~-sG~rS~~aA~~L~~--------lGf~nV~vL~GG~~gwraW~~ 350 (391)
..+++++||+||. +|.|+..+++.|.+ .||+||++|.||+. +|++
T Consensus 58 ~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~---~w~~ 111 (113)
T cd01531 58 SGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN---AWES 111 (113)
T ss_pred hcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH---HHHh
Confidence 1256889999998 66788888887754 49999999999999 7765
No 37
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.59 E-value=1.9e-15 Score=147.14 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=91.0
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHh-----------hcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKD-----------KAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIV 294 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~-----------~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~ 294 (391)
.+.+++...+++++.+|||+|+++||. .||||| |+| +|+.++.+ ...++++.+++..+.
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpg----A~~----i~~~~~~~--~~~~~~~~~l~~~~~ 224 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPG----ALN----VPWTELVR--EGELKTTDELDAIFF 224 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCC----cCC----CCHHHhcC--CCCcCCHHHHHHHHH
Confidence 344555556666678999999999995 699999 999 99877543 234566677766665
Q ss_pred HHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHh-cCCCCcc
Q 016309 295 ALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQ-SRLGSDS 357 (391)
Q Consensus 295 a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~-aGLpv~s 357 (391)
..++ +++++||+||++|.+|..++..|+.+||+|+++|+|||. +|.. .++|++.
T Consensus 225 ~~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~---eW~~~~~~P~~~ 279 (281)
T PRK11493 225 GRGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS---EWGARADLPVEP 279 (281)
T ss_pred hcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH---HHccCCCCCcCC
Confidence 5444 788999999999999999999999999999999999999 9987 6888764
No 38
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.58 E-value=2.6e-15 Score=149.21 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=82.7
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.++++++.+++++++.+|||||++.||+.||||| |+| +|+.++.+.... ++. .+. .
T Consensus 113 ~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~G----Ai~----ip~~~~~~~~~~-------l~~--------~~~-~ 168 (314)
T PRK00142 113 YLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFEN----AIE----PDIETFREFPPW-------VEE--------NLD-P 168 (314)
T ss_pred ccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCC----CEe----CCHHHhhhhHHH-------HHH--------hcC-C
Confidence 6999999999988889999999999999999999 999 998776542111 100 111 2
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHH
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRG 347 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwra 347 (391)
.++++||+||.+|.|+..++..|+++||+||+.|.||+.+|..
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 5889999999999999999999999999999999999995543
No 39
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.58 E-value=2.4e-15 Score=149.34 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=92.7
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhH-----------hhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDK-----------DKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIV 294 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef-----------~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~ 294 (391)
++.+++.+.+++++.+|||+|++.|| ..||||| |+| +|+..+.+. .+.++++++++..+.
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPg----Avn----ip~~~~~~~-~~~~~~~~el~~~~~ 262 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPG----SKC----VPFPQMLDS-SQTLLPAEELKKRFE 262 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCC----Ccc----cCHHHhcCC-CCCCCCHHHHHHHHH
Confidence 67889988888777899999999988 5699999 999 998654332 235667777776666
Q ss_pred HHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhc-CCCCc
Q 016309 295 ALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQS-RLGSD 356 (391)
Q Consensus 295 a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~a-GLpv~ 356 (391)
..++ +++++||+||++|.+|..++..|+.+||+||++|+|||. +|... ++|++
T Consensus 263 ~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~---eW~~~~~~Pv~ 316 (320)
T PLN02723 263 QEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT---EWGALPDTPVA 316 (320)
T ss_pred hcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH---HHhcCCCCCcc
Confidence 5444 789999999999999999999999999999999999998 88654 46654
No 40
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.57 E-value=5e-15 Score=143.39 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=80.7
Q ss_pred ccCHHHHHHHhhCC------CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQ------NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKI 298 (391)
Q Consensus 225 ~ISp~ea~~ll~~~------~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I 298 (391)
.++++++.++++++ +.++||||++.||+.||||| |+| +|++++.++..++.. .
T Consensus 111 ~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~G----Ain----iPl~~f~~~~~~l~~-------~------ 169 (257)
T PRK05320 111 SVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDG----ALD----YRIDKFTEFPEALAA-------H------ 169 (257)
T ss_pred eeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCC----CEe----CChhHhhhhHHHHHh-------h------
Confidence 69999999988753 47899999999999999999 999 999776543222110 0
Q ss_pred hhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHh
Q 016309 299 SYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 299 ~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~ 350 (391)
+.. .++++|++||.+|.|+..++..|++.||+||++|.||+. +|.+
T Consensus 170 --~~~-~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~---~w~~ 215 (257)
T PRK05320 170 --RAD-LAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL---KYFE 215 (257)
T ss_pred --hhh-cCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH---HHHH
Confidence 111 368999999999999999999999999999999999999 6654
No 41
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.57 E-value=3.7e-15 Score=125.12 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=66.2
Q ss_pred CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCc
Q 016309 239 NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSD 318 (391)
Q Consensus 239 ~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~ 318 (391)
+..+||+|+++||..||||| |+| ||+.++...+.+. . .+++++||+||.+|.
T Consensus 18 ~~~lIDvR~~~ef~~ghIpg----Ain----ip~~~l~~~l~~~-------------------~-~~~~~~vvlyC~~G~ 69 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQG----AIN----IPLKEIKEHIATA-------------------V-PDKNDTVKLYCNAGR 69 (101)
T ss_pred CCEEEECCCHHHHhcCCCCC----CEE----CCHHHHHHHHHHh-------------------C-CCCCCeEEEEeCCCH
Confidence 45799999999999999999 999 9987654322211 1 257889999999999
Q ss_pred hHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 319 SAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 319 rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
+|..++..|+++||+|++++ ||++ +|.
T Consensus 70 rS~~aa~~L~~~G~~~v~~~-GG~~---~~~ 96 (101)
T TIGR02981 70 QSGMAKDILLDMGYTHAENA-GGIK---DIA 96 (101)
T ss_pred HHHHHHHHHHHcCCCeEEec-CCHH---Hhh
Confidence 99999999999999999885 9999 775
No 42
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.56 E-value=8.8e-15 Score=123.45 Aligned_cols=97 Identities=16% Similarity=0.322 Sum_probs=73.8
Q ss_pred ccCHHHHHHHhhCC------CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQ------NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKI 298 (391)
Q Consensus 225 ~ISp~ea~~ll~~~------~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I 298 (391)
.|+++++.++++++ +.+|||||++ ||..+|||| |+| +|+.++.+++.+.+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipg----Ai~----ip~~~~~~~~~~~~~-------------- 59 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKG----SIN----LPAQSCYQTLPQVYA-------------- 59 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccC----cee----cchhHHHHHHHHHHH--------------
Confidence 58999999999875 5789999999 999999999 999 999876543322211
Q ss_pred hhhhcCCCCCEEEEEeCC-CchHHHHHHHHH----HcCC--CceEEccCcccccHHHH
Q 016309 299 SYLKRINKGSKIIIMDSY-SDSAKIVARVLT----SLGF--KNCWIVADGFSGRRGWL 349 (391)
Q Consensus 299 ~~L~kl~kd~~IVVyC~s-G~rS~~aA~~L~----~lGf--~nV~vL~GG~~gwraW~ 349 (391)
.+.+ .++++||+||.+ |.|+..++..|. +.|| .++++|.||+. +|.
T Consensus 60 -~~~~-~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~---~w~ 112 (113)
T cd01443 60 -LFSL-AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK---AWY 112 (113)
T ss_pred -Hhhh-cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh---hhc
Confidence 1111 456899999997 578877776544 4575 78999999999 664
No 43
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.53 E-value=1.1e-14 Score=123.03 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=65.4
Q ss_pred CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCc
Q 016309 239 NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSD 318 (391)
Q Consensus 239 ~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~ 318 (391)
+-++||+|+++||+.+|||| |+| +|+.++..++.. +. .+++++||+||++|.
T Consensus 20 ~~~lIDvR~~~ef~~ghIpG----Ain----iP~~~l~~~l~~-------------------l~-~~~~~~IVlyC~~G~ 71 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQG----AIN----IPLKEVKERIAT-------------------AV-PDKNDTVKLYCNAGR 71 (104)
T ss_pred CCEEEECCCHHHHhcCCCCc----cEE----CCHHHHHHHHHh-------------------cC-CCCCCeEEEEeCCCh
Confidence 45799999999999999999 999 998765432221 11 156789999999999
Q ss_pred hHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309 319 SAKIVARVLTSLGFKNCWIVADGFSGRRGWL 349 (391)
Q Consensus 319 rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~ 349 (391)
+|..+++.|.++||+++++ .||+. +|.
T Consensus 72 rS~~aa~~L~~~G~~~v~~-~GG~~---~~~ 98 (104)
T PRK10287 72 QSGQAKEILSEMGYTHAEN-AGGLK---DIA 98 (104)
T ss_pred HHHHHHHHHHHcCCCeEEe-cCCHH---HHh
Confidence 9999999999999999987 69999 664
No 44
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.50 E-value=9.5e-14 Score=139.73 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=75.8
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchh--hhhhhhchHH----------HHHHH
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSK--LKGLVRNAKK----------VEAEI 293 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~--l~~ll~n~~~----------le~~l 293 (391)
....++.+++. ++.+|||||++.||..||||| |+| +|+.+..++ ++...+.... +...+
T Consensus 3 ~~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpg----Ain----iPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 3 PDAQDFRALFL-NDTPLIDVRSPIEFAEGHIPG----AIN----LPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred CcHHHHHHHHh-CCCEEEECCCHHHHhcCCCCC----eee----CCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 34667776654 568999999999999999999 999 999654321 1111111000 00011
Q ss_pred HHHHHhhhhcC-CCCCEEEEEeC-CCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCC
Q 016309 294 VALKISYLKRI-NKGSKIIIMDS-YSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRL 353 (391)
Q Consensus 294 ~a~~I~~L~kl-~kd~~IVVyC~-sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGL 353 (391)
.......+... .++++||+||. +|.||..+++.|..+|| +++.|.|||. +|+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~---awr~~~~ 131 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYK---AYRRFVI 131 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHH---HHHHhhH
Confidence 11000001112 37899999995 78999999999999999 5999999999 5554444
No 45
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.50 E-value=4e-14 Score=151.77 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=94.2
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHh--------hcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKD--------KAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVAL 296 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~--------~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~ 296 (391)
.++.+++.+.+++++.+|||+|+++||. .||||| |+| +|+..+.+. .+.++++++++..+...
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPG----Avn----ip~~~~~~~-~~~lk~~~el~~~~~~~ 218 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPG----AVN----FEWTAGMDK-ARNLRIRQDMPEILRDL 218 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCC----Cee----cCHHHhcCC-CCCCCCHHHHHHHHHHc
Confidence 4788999998887788999999999994 799999 999 998653221 13456666776666554
Q ss_pred HHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhc-CCCCccc
Q 016309 297 KISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQS-RLGSDSY 358 (391)
Q Consensus 297 ~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~a-GLpv~s~ 358 (391)
++ +++++||+||.+|.+|..+++.|+.+||+||++|+|||. +|.+. ++|++.-
T Consensus 219 Gi------~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~---eW~~~~~lPv~~~ 272 (610)
T PRK09629 219 GI------TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWG---EWGNHPDTPVEVP 272 (610)
T ss_pred CC------CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHH---HHhCCCCCccccC
Confidence 43 789999999999999999999999999999999999988 88764 6777644
No 46
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.50 E-value=5.6e-14 Score=143.33 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=82.6
Q ss_pred ccCHHHHHHHhhCC-CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 225 ELTPAQSLDLITAQ-NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 225 ~ISp~ea~~ll~~~-~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
.++++|+.++++++ +.+|||+|+++||+.+|||| |+| +|+.++... . .+.+
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpG----Ain----ip~~~l~~~--~------------------~~~~ 339 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPVEWDIVHIPG----AQL----IPKSEILSG--E------------------ALAK 339 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCC----CEE----cChHHhcch--h------------------HHhh
Confidence 68999999998764 57899999999999999999 999 998765420 0 0112
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCC
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRL 353 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGL 353 (391)
++++++||+||++|.+|..+++.|++.||+||++|.||+. +|.....
T Consensus 340 l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~---~W~~~~~ 386 (392)
T PRK07878 340 LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV---AWAKQVD 386 (392)
T ss_pred CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH---HHHHhcC
Confidence 4789999999999999999999999999999999999999 7766543
No 47
>PRK07411 hypothetical protein; Validated
Probab=99.49 E-value=3.7e-14 Score=144.63 Aligned_cols=100 Identities=19% Similarity=0.353 Sum_probs=79.7
Q ss_pred ccCHHHHHHHhhCC--CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhh
Q 016309 225 ELTPAQSLDLITAQ--NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302 (391)
Q Consensus 225 ~ISp~ea~~ll~~~--~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~ 302 (391)
.|+++|+.++++++ +.+|||||++.||+.||||| |+| ||+.++..... +..+.
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpG----Ain----iP~~~l~~~~~-----------------~~~l~ 337 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPG----SVL----VPLPDIENGPG-----------------VEKVK 337 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCC----CEE----ccHHHhhcccc-----------------hHHHh
Confidence 69999999988754 47899999999999999999 999 99876543100 01112
Q ss_pred cCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCC
Q 016309 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRL 353 (391)
Q Consensus 303 kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGL 353 (391)
.++++++||+||.+|.||..+++.|+++||++ +.|.||+. +|.+...
T Consensus 338 ~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~---~W~~~~~ 384 (390)
T PRK07411 338 ELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGIT---AWSREVD 384 (390)
T ss_pred hcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHH---HHHHhcC
Confidence 23678999999999999999999999999985 67999999 5554433
No 48
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=135.56 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=100.1
Q ss_pred ccCHHHHHHHhhCC-----CcEEEEcCCh--hhHhhcCCCCCCccccccccccCCCCcchh---hhhhhhchHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQ-----NHLMIDIRSE--KDKDKAGIPRLPPSAKNRMVSIPLEELPSK---LKGLVRNAKKVEAEIV 294 (391)
Q Consensus 225 ~ISp~ea~~ll~~~-----~~vLIDVRs~--~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~---l~~ll~n~~~le~~l~ 294 (391)
.++++++.+.+.++ +..+++.+.. .+|.++|||| |++ ++++.+... ..+++++++.++..+.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPG----Av~----~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPG----AVF----FDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCC----CEe----cCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 58999999998865 5666666655 8999999999 999 888654322 3578899999999998
Q ss_pred HHHHhhhhcCCCCCEEEEEeCCC-chHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 295 ALKISYLKRINKGSKIIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 295 a~~I~~L~kl~kd~~IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
+++| +.|+.||+|+..| ..|.+++|.|+.+|++||++|+||++ +|+.+|+|++...
T Consensus 84 ~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~---~W~~~g~p~~~~~ 140 (285)
T COG2897 84 ELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLP---AWKAAGLPLETEP 140 (285)
T ss_pred HcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHH---HHHHcCCCccCCC
Confidence 8887 8899999999775 58999999999999999999999999 9999999998654
No 49
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.42 E-value=2.7e-13 Score=137.52 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=76.2
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.++++|+.+++++++.+|||||+++||+.+||||. .+|+| ||++++.++.. . +..+..+
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~-~gAin----IPl~~l~~~~~-~---------------~~~l~~~ 330 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEG-GASLK----LPLSAITDDAD-I---------------LHALSPI 330 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCC-CccEe----CcHHHhhcchh-h---------------hhhcccc
Confidence 36889999999887789999999999999999831 12888 99887753210 0 0112222
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCc-eEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKN-CWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~n-V~vL~GG~~ 343 (391)
+++ +||+||++|.||..+++.|+++||++ |++|.|||.
T Consensus 331 ~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 444 89999999999999999999999996 999999986
No 50
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5e-13 Score=131.26 Aligned_cols=114 Identities=21% Similarity=0.266 Sum_probs=91.1
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhh----------cCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDK----------AGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIV 294 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~----------gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~ 294 (391)
..+.++....+..+..+|||+|++++|.. ||||| |+| ||+.++-+ -+..++.++.++..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPG----AiN----ipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPG----AIN----IPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCC----CcC----cCHHHHhc-CCCccCcHHHHHHHHH
Confidence 35556677777777888999999999988 99999 999 99987655 3456666666655554
Q ss_pred HHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcC-CCCc
Q 016309 295 ALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR-LGSD 356 (391)
Q Consensus 295 a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aG-Lpv~ 356 (391)
..++ +++++||+||.+|.+|...+..|+.+|+.++.+|+|++. +|-+.. .|++
T Consensus 228 ~~gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWs---EWg~~~~~PV~ 281 (285)
T COG2897 228 DAGI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWS---EWGSDPDRPVE 281 (285)
T ss_pred hcCC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHH---HhhcCCCCccc
Confidence 4444 899999999999999999999999999998899999877 886543 3544
No 51
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.39 E-value=1.4e-12 Score=112.68 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=75.3
Q ss_pred cCHHHHHHHhhC--CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhh--------hhhhchHHHHHHHHH
Q 016309 226 LTPAQSLDLITA--QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLK--------GLVRNAKKVEAEIVA 295 (391)
Q Consensus 226 ISp~ea~~ll~~--~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~--------~ll~n~~~le~~l~a 295 (391)
|+++++.+++++ ++.++||+|+..+|..+|||| |+| +|+..+..+.. .++.+++..
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~----ai~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 67 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRG----AVN----VCCPTILRRRLQGGKILLQQLLSCPEDR------ 67 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccC----cEe----cChHHHHHHhhcccchhhhhhcCCHHHH------
Confidence 789999999986 468999999999999999999 999 88865321100 011111111
Q ss_pred HHHhhhhcCCCCCEEEEEeCCCch---------HHHHHHHHHH--cCCCceEEccCcccccHHHHh
Q 016309 296 LKISYLKRINKGSKIIIMDSYSDS---------AKIVARVLTS--LGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 296 ~~I~~L~kl~kd~~IVVyC~sG~r---------S~~aA~~L~~--lGf~nV~vL~GG~~gwraW~~ 350 (391)
..+.. .++++||+||..|.+ +..+++.|.+ .|+.+|++|+|||. +|.+
T Consensus 68 ---~~l~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~---~w~~ 126 (132)
T cd01446 68 ---DRLRR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE---QFSS 126 (132)
T ss_pred ---HHHhc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH---HHHh
Confidence 11222 267899999998864 6677777777 47789999999999 8854
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.38 E-value=5.5e-13 Score=134.52 Aligned_cols=93 Identities=19% Similarity=0.374 Sum_probs=75.0
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
.++++++.++. .+.+|||+|+++||+.+|||| |+| +|+.++...... ..+
T Consensus 262 ~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpg----Ain----ip~~~l~~~~~~--------------------~~~ 311 (355)
T PRK05597 262 VLDVPRVSALP--DGVTLIDVREPSEFAAYSIPG----AHN----VPLSAIREGANP--------------------PSV 311 (355)
T ss_pred ccCHHHHHhcc--CCCEEEECCCHHHHccCcCCC----CEE----eCHHHhhhcccc--------------------ccC
Confidence 35666666432 357899999999999999999 999 998765431100 013
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHh
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~ 350 (391)
+++++||+||++|.+|..+++.|++.||+||++|+||++ +|..
T Consensus 312 ~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~---~W~~ 354 (355)
T PRK05597 312 SAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE---GWLD 354 (355)
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH---HHhh
Confidence 678999999999999999999999999999999999999 7754
No 53
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.38 E-value=1.4e-12 Score=129.60 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=69.3
Q ss_pred CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchh--hhhhhhch----------HHHHHHHHHHHHhhhhc-CC
Q 016309 239 NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSK--LKGLVRNA----------KKVEAEIVALKISYLKR-IN 305 (391)
Q Consensus 239 ~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~--l~~ll~n~----------~~le~~l~a~~I~~L~k-l~ 305 (391)
+.+|||||++.||.+||||| |+| ||+.+..++ ++...+.. +.+...+.. .+..+.+ .+
T Consensus 2 ~~~liDVRsp~Ef~~ghipg----Ain----iPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~-~i~~~~~~~~ 72 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPG----AIN----LPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAA-HVEQWRAFAD 72 (311)
T ss_pred CCEEEECCCHHHHhcCCCcC----CEe----cccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHH-HHHHHHhhcC
Confidence 46899999999999999999 999 999654332 22222110 011111111 1222211 24
Q ss_pred CCCEEEEEeC-CCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCC
Q 016309 306 KGSKIIIMDS-YSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLG 354 (391)
Q Consensus 306 kd~~IVVyC~-sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLp 354 (391)
++.+||+||. +|.||..+++.|+.+|| ++++|.||+. +|+..+.+
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~---aw~~~~~~ 118 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYK---AYRRFVID 118 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHH---HHHHhhhh
Confidence 5556999995 78999999999999999 6999999999 55555543
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.14 E-value=3.8e-11 Score=117.72 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=80.4
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI 304 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl 304 (391)
-|+|.++.+++.+++.++||.|+.-||+-||..| |++ .+...|.+...+...+ + ..
T Consensus 114 yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~g----Av~----p~~~tFrefP~~v~~~---------------~-~~ 169 (308)
T COG1054 114 YLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEG----AVE----PDIETFREFPAWVEEN---------------L-DL 169 (308)
T ss_pred ccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecC----ccC----CChhhhhhhHHHHHHH---------------H-Hh
Confidence 3889999999999999999999999999999999 999 7776655433222111 1 11
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGR 345 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gw 345 (391)
.++++|+.||.+|.|..++.-+|...||++||.|+||+-.|
T Consensus 170 ~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y 210 (308)
T COG1054 170 LKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKY 210 (308)
T ss_pred ccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHH
Confidence 56789999999999999999999999999999999999833
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.96 E-value=1.8e-09 Score=105.45 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=96.5
Q ss_pred ccCHHHHHHHhhCCCcEEEEcC---------ChhhHhhcCCCCCCccccccccccCCCCcc---hhhhhhhhchHHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIR---------SEKDKDKAGIPRLPPSAKNRMVSIPLEELP---SKLKGLVRNAKKVEAE 292 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVR---------s~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~---~~l~~ll~n~~~le~~ 292 (391)
.+++.++.+++.+.+.+|||.. ...||...|||| +.+ +.++... ...+.+++.++.+++.
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipg----a~~----fdld~~~~~s~~~~~~lp~~e~Fa~y 77 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPG----ASH----FDLDIISYPSSPYRHMLPTAEHFAEY 77 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCC----cee----eeccccccCCCcccccCccHHHHHHH
Confidence 5788899999988789999975 456788899999 998 7766542 2244566666666666
Q ss_pred HHHHHHhhhhcCCCCCEEEEEeC--CCc-hHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 293 IVALKISYLKRINKGSKIIIMDS--YSD-SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 293 l~a~~I~~L~kl~kd~~IVVyC~--sG~-rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
...+++ +.++.+|||++ .|+ .|.+++|.++-.|+++|+.|.|||+ .|+.+|+++++..
T Consensus 78 ~~~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~---~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 78 ASRLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFR---AWKAAGGPVDSSK 138 (286)
T ss_pred HHhcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHH---HHHHcCCcccccc
Confidence 666555 88999999999 775 7899999999999999999999999 9999999998776
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.94 E-value=1.3e-09 Score=114.32 Aligned_cols=85 Identities=15% Similarity=0.312 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCC
Q 016309 229 AQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGS 308 (391)
Q Consensus 229 ~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~ 308 (391)
.+..+.+. ++.++||||+++||+.+||||---.++| +|+.++...+ ..+++++
T Consensus 398 ~~~~~~~~-~~~~lIDVR~~~E~~~~hI~g~~~~a~n----iP~~~l~~~~----------------------~~l~~~~ 450 (482)
T PRK01269 398 VETVSELP-PDDVIIDIRSPDEQEDKPLKLEGVEVKS----LPFYKLSTQF----------------------GDLDQSK 450 (482)
T ss_pred hHHHHhcC-CCCEEEECCCHHHHhcCCCCCCCceEEE----CCHHHHHHHH----------------------hhcCCCC
Confidence 33444443 4689999999999999999871001356 8876654311 1236788
Q ss_pred EEEEEeCCCchHHHHHHHHHHcCCCceEEccC
Q 016309 309 KIIIMDSYSDSAKIVARVLTSLGFKNCWIVAD 340 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~G 340 (391)
+||+||.+|.||..++..|+++||+||+++.+
T Consensus 451 ~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 451 TYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999999999999998753
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.2e-08 Score=101.55 Aligned_cols=121 Identities=18% Similarity=0.320 Sum_probs=87.4
Q ss_pred HhcCCCCccCHHHHHHHhhC------CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHH
Q 016309 218 SLRGYKGELTPAQSLDLITA------QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEA 291 (391)
Q Consensus 218 ~~r~~~g~ISp~ea~~ll~~------~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~ 291 (391)
.-..++ .||++.+..+++. ..++|||+|-+-||..|||+| |+| |+..+.-..+ +....
T Consensus 151 k~~~~k-~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkg----avn----l~~~~~~~~~---f~~~~---- 214 (325)
T KOG3772|consen 151 KSQDLK-YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKG----AVN----LYSKELLQDF---FLLKD---- 214 (325)
T ss_pred cccccc-ccCHHHHHHHHHhccccceeeEEEEEeCCcccccCccccc----cee----cccHhhhhhh---hcccc----
Confidence 445555 7999999999875 136799999999999999999 999 8775532211 10000
Q ss_pred HHHHHHHhhhhcCCCCCEEEEEeCCC-chHHHHHHHHHH------------cCCCceEEccCcccccHHHHhcCCCCccc
Q 016309 292 EIVALKISYLKRINKGSKIIIMDSYS-DSAKIVARVLTS------------LGFKNCWIVADGFSGRRGWLQSRLGSDSY 358 (391)
Q Consensus 292 ~l~a~~I~~L~kl~kd~~IVVyC~sG-~rS~~aA~~L~~------------lGf~nV~vL~GG~~gwraW~~aGLpv~s~ 358 (391)
+ ..+..+...+||||... .|...+|+.|+. +-|..+|+|+|||. .|-..
T Consensus 215 -----~---~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk---~ff~~------- 276 (325)
T KOG3772|consen 215 -----G---VPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYK---EFFSN------- 276 (325)
T ss_pred -----c---cccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHH---HHHHh-------
Confidence 0 00013456799999875 588999999983 45677999999999 87432
Q ss_pred ccCceeccCCccccccc
Q 016309 359 NFSFTEVLSPSRVIPAA 375 (391)
Q Consensus 359 ~~s~~el~~~sr~~p~~ 375 (391)
..++|+|.-|+|=.
T Consensus 277 ---~~~LCeP~~Yv~M~ 290 (325)
T KOG3772|consen 277 ---YPNLCEPQSYVPMH 290 (325)
T ss_pred ---cccccCccceeccc
Confidence 12999999999976
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.64 E-value=2e-08 Score=100.46 Aligned_cols=100 Identities=21% Similarity=0.381 Sum_probs=77.1
Q ss_pred ccCHHHHHHHhhC-CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309 225 ELTPAQSLDLITA-QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR 303 (391)
Q Consensus 225 ~ISp~ea~~ll~~-~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k 303 (391)
.|+..++.+++++ ...++||||++.||+..|+|+ ++| ||+.+++.+... ... ..+
T Consensus 318 Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~----avN----IPL~~l~~~~~~------~~~--------~~~-- 373 (427)
T KOG2017|consen 318 RVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPE----AVN----IPLKELRSRSGK------KLQ--------GDL-- 373 (427)
T ss_pred cccHHHHHHHHhcCCCeEEEeccCcceEEEEeccc----ccc----cchhhhhhhhhh------hhc--------ccc--
Confidence 5788888998887 468999999999999999999 999 999888764321 000 000
Q ss_pred CCCCCEEEEEeCCCchHHHHHHHHHHcCC-CceEEccCcccccHHHHhc
Q 016309 304 INKGSKIIIMDSYSDSAKIVARVLTSLGF-KNCWIVADGFSGRRGWLQS 351 (391)
Q Consensus 304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf-~nV~vL~GG~~gwraW~~a 351 (391)
-....+|+++|+.|+.|.++.+.|++.++ .+++.+.||+. +|...
T Consensus 374 ~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~---~w~~~ 419 (427)
T KOG2017|consen 374 NTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLK---AWAAK 419 (427)
T ss_pred cccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHH---HHHHh
Confidence 13456799999999999999999997544 45667888888 77543
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.07 E-value=4.2e-06 Score=82.10 Aligned_cols=94 Identities=22% Similarity=0.344 Sum_probs=74.8
Q ss_pred CCcEEEEcCChhhHh-----------hcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCC
Q 016309 238 QNHLMIDIRSEKDKD-----------KAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINK 306 (391)
Q Consensus 238 ~~~vLIDVRs~~Ef~-----------~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~k 306 (391)
.++..||.|...+|. .||||| ++| +|+.++-..- +..+.++++...+..+++ ..
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpG----a~n----~P~~~~~~~~-g~~k~~edl~~~f~~~~l------~~ 235 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPG----AIN----FPFDEVLDPD-GFIKPAEDLKHLFAQKGL------KL 235 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCC----ccc----CChHHhcccc-cccCCHHHHHHHHHhcCc------cc
Confidence 468999999988874 589999 999 9998765432 233336666666666554 66
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHh
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQ 350 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~ 350 (391)
++++|+-|..|..+...+-.|.+.| .++.+|+|++. .|..
T Consensus 236 ~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~---Ew~~ 275 (286)
T KOG1529|consen 236 SKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWT---EWAL 275 (286)
T ss_pred CCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHH---HHhh
Confidence 8999999999999999999999999 67999999988 7753
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.43 E-value=0.00015 Score=72.50 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=78.0
Q ss_pred CccCHHHHHHHhhC------CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHH
Q 016309 224 GELTPAQSLDLITA------QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALK 297 (391)
Q Consensus 224 g~ISp~ea~~ll~~------~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~ 297 (391)
..|+++.++.+++. .+.+|||.|=+.||..|||.+ |+| |.-.+ .++..+. .
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIin----aVN----i~s~~---~l~~~F~----------h-- 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIIN----AVN----ISSTK---KLGLLFR----------H-- 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeee----eee----cchHH---HHHHHHH----------h--
Confidence 36999999988864 246799999999999999999 999 65422 1111111 0
Q ss_pred HhhhhcCCCCCEEEEEeCCC-chHHHHHHHHHHc------------CCCceEEccCcccccHHHHhcCCCCcccccCcee
Q 016309 298 ISYLKRINKGSKIIIMDSYS-DSAKIVARVLTSL------------GFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTE 364 (391)
Q Consensus 298 I~~L~kl~kd~~IVVyC~sG-~rS~~aA~~L~~l------------Gf~nV~vL~GG~~gwraW~~aGLpv~s~~~s~~e 364 (391)
+.+..-.-+|+.|... .|+...|..|+.. =|..||+|+|||. .+-. .+-+
T Consensus 299 ----kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk---~fy~----------n~p~ 361 (427)
T COG5105 299 ----KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYK---KFYS----------NYPD 361 (427)
T ss_pred ----ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHH---HHhh----------cCcc
Confidence 1123356799999864 6999999988853 3567999999998 5421 3446
Q ss_pred ccCCcccccccc
Q 016309 365 VLSPSRVIPAAA 376 (391)
Q Consensus 365 l~~~sr~~p~~~ 376 (391)
+|.|..|.|-..
T Consensus 362 lCdP~~YV~Mn~ 373 (427)
T COG5105 362 LCDPKGYVTMNN 373 (427)
T ss_pred ccCccccccccc
Confidence 666666666543
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.68 E-value=0.0029 Score=62.85 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=67.7
Q ss_pred HHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchh--hhhhhh-----c-----hHHHHHHHHHHH
Q 016309 230 QSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSK--LKGLVR-----N-----AKKVEAEIVALK 297 (391)
Q Consensus 230 ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~--l~~ll~-----n-----~~~le~~l~a~~ 297 (391)
+..+.+.-.+..+||||.+-||..||.|+ ++| +|...-.++ ++...+ + ...++.++....
T Consensus 6 q~~~~~~~~~~~lid~rap~ef~~g~~~i----a~n----l~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~ 77 (334)
T COG2603 6 QDYRALLLADTPLIDVRAPIEFENGAMPI----AIN----LPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQR 77 (334)
T ss_pred HHHHHHHhcCCceeeccchHHHhcccchh----hhc----cccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHH
Confidence 33333333457899999999999999999 999 887432221 211111 1 122333443333
Q ss_pred HhhhhcCCCCCEEEEEeCCC-chHHHHHHHH-HHcCCCceEEccCcccccH
Q 016309 298 ISYLKRINKGSKIIIMDSYS-DSAKIVARVL-TSLGFKNCWIVADGFSGRR 346 (391)
Q Consensus 298 I~~L~kl~kd~~IVVyC~sG-~rS~~aA~~L-~~lGf~nV~vL~GG~~gwr 346 (391)
+..-+....+.++-++|..| .++..++.+| +..|++ .-.+.||+...|
T Consensus 78 l~ask~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 78 LEASKAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHHHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 32222233456777779775 6999999999 778886 556789998554
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=92.97 E-value=0.4 Score=42.08 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=49.5
Q ss_pred CccCHHHHHHHhhCCCcEEEEcCChhhHhhcC----------CCCCCccccccccccCCCCcchhhhhhhhchHHHHHHH
Q 016309 224 GELTPAQSLDLITAQNHLMIDIRSEKDKDKAG----------IPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEI 293 (391)
Q Consensus 224 g~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gH----------IPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l 293 (391)
+.++++++..+...+=-.+||.|+..|..... -+| - .++++|+..- . + ++..++...
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~g----l--~y~~iPv~~~-----~-~-~~~~v~~f~ 79 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAG----V--TYHHQPVTAG-----D-I-TPDDVETFR 79 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCC----C--eEEEeecCCC-----C-C-CHHHHHHHH
Confidence 35899998876555545899999887643211 123 1 1345765421 0 0 111221111
Q ss_pred HHHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHH-HHcCCC
Q 016309 294 VALKISYLKRINKGSKIIIMDSYSDSAKIVARVL-TSLGFK 333 (391)
Q Consensus 294 ~a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L-~~lGf~ 333 (391)
.. + . ..+.+|++||.+|.|+..++..+ ...|..
T Consensus 80 ~~-----~-~-~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 80 AA-----I-G-AAEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred HH-----H-H-hCCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 11 1 1 23678999999999987765443 334654
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.07 E-value=0.96 Score=38.78 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.7
Q ss_pred CccCHHHHHHHhhCCCcEEEEcCChhh
Q 016309 224 GELTPAQSLDLITAQNHLMIDIRSEKD 250 (391)
Q Consensus 224 g~ISp~ea~~ll~~~~~vLIDVRs~~E 250 (391)
+.++++++.++-..+=-.||+.|+..|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 458999999887766458999997754
No 64
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=88.00 E-value=0.33 Score=48.13 Aligned_cols=98 Identities=24% Similarity=0.250 Sum_probs=56.7
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhh------hhhhchHHHHHHHHHHHH
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLK------GLVRNAKKVEAEIVALKI 298 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~------~ll~n~~~le~~l~a~~I 298 (391)
.++..|+.+.+..++.+++|.|+ +..||.+ |+| +.+|.-.+....+ .++++....
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~----A~~--valPalmlrrl~~g~l~~ra~~p~~~d~--------- 65 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIES----AIN--VALPALMLRRLTGGNLPVRALFPRSCDD--------- 65 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhh----hhh--hcchHHHHHHHhCCCCcceeccCCcccc---------
Confidence 36788888888888899999999 5568877 877 3344211111111 111111110
Q ss_pred hhhhcC---CCCCEEEEEeCCCc------hHHH----HHHHHHHcCCCceEEccCccccc
Q 016309 299 SYLKRI---NKGSKIIIMDSYSD------SAKI----VARVLTSLGFKNCWIVADGFSGR 345 (391)
Q Consensus 299 ~~L~kl---~kd~~IVVyC~sG~------rS~~----aA~~L~~lGf~nV~vL~GG~~gw 345 (391)
+.. -+...+|.|+.... .+.. .-+.++..|+. ++.|.|||.-.
T Consensus 66 ---~~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~f 121 (343)
T KOG1717|consen 66 ---KRFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKF 121 (343)
T ss_pred ---ccccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchh
Confidence 000 12357899997621 1121 22445667985 89999999933
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=87.64 E-value=0.25 Score=53.35 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=55.7
Q ss_pred CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCc
Q 016309 239 NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSD 318 (391)
Q Consensus 239 ~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~ 318 (391)
...++|.|...||..+|+++ ++| +|...-+..+.++..-+ ++.. .++.+++++.....
T Consensus 634 ~l~v~d~r~~~ef~r~~~s~----s~n----ip~~~~ea~l~~~~~l~----------~~~~----~~~~~~v~~~~~~K 691 (725)
T KOG1093|consen 634 MLYVLDTRQESEFQREHFSD----SIN----IPFNNHEADLDWLRFLP----------GIVC----SEGKKCVVVGKNDK 691 (725)
T ss_pred HHHHHhHHHHHHHHHhhccc----ccc----CCccchHHHHHHhhcch----------HhHH----hhCCeEEEeccchH
Confidence 46789999999999999999 999 99873332222221100 1101 34566666666555
Q ss_pred hHHHHHHHHHHcCCCceEEccCccc
Q 016309 319 SAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 319 rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.+.+....+..+-|.+...+.+|++
T Consensus 692 ~~~e~~~~~~~mk~p~~cil~~~~~ 716 (725)
T KOG1093|consen 692 HAAERLTELYVMKVPRICILHDGFN 716 (725)
T ss_pred HHHHHhhHHHHhcccHHHHHHHHHh
Confidence 6666666666666888888999987
No 66
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=86.53 E-value=0.064 Score=53.87 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=39.1
Q ss_pred cCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhh
Q 016309 226 LTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLV 283 (391)
Q Consensus 226 ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll 283 (391)
-+++++.+.+.+ ....+|+|....|..+|||| ++| +|.+.+..+.+++.
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIng----tis----~~~~~~~~~~~~l~ 64 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGING----TVS----GTIEQTEAYMAWLK 64 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceE----EEE----ecHHHHHHHHHHHh
Confidence 357777777664 35689999999999999999 999 99877777666554
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.88 E-value=11 Score=33.57 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=18.7
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhhc
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKA 254 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~g 254 (391)
.+|+++...+.+-+=-.|||.|++.|....
T Consensus 29 ~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~ 58 (164)
T PF13350_consen 29 NLTEADLERLRELGIRTIIDLRSPTERERA 58 (164)
T ss_dssp T--HHHHHHHHHTT--EEEE-S-HHHHHHH
T ss_pred cCCHHHHHHHHhCCCCEEEECCCccccccC
Confidence 588888877764344589999999998765
No 68
>PHA01399 membrane protein P6
Probab=77.98 E-value=52 Score=31.35 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=37.2
Q ss_pred HhcCCChHHHHHHhhHHHHHhhhhhhhhcccccchhHHHHHhhhcChHHHHHHHHHHHH
Q 016309 145 QSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFI 203 (391)
Q Consensus 145 ~~~g~d~~~v~~aa~t~~~~~~~~~~~~~~~~p~~~~~~~~f~~~~pv~~~~~~g~~~l 203 (391)
++.|--...+-+|||..+++++++ +.|+ =.|...||-++++.+.+..+
T Consensus 138 kg~~~~a~a~weaakelgsaaggv---~~g~--------wdfik~npel~agg~a~~wl 185 (242)
T PHA01399 138 KGAGAAADAAWEAAKELGSAAGGV---IGGI--------WDFIKDNPELIAGGAAAAWL 185 (242)
T ss_pred cccchhhhHHHHHHHHhhhhccch---hhhH--------HHHhccCHHHHhhhHHHHHh
Confidence 667777778889999999999877 5443 38999999999887765544
No 69
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=73.78 E-value=13 Score=31.52 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=18.8
Q ss_pred CCCEEEEEeCCCc-hHHHH--HHHHHHcCC
Q 016309 306 KGSKIIIMDSYSD-SAKIV--ARVLTSLGF 332 (391)
Q Consensus 306 kd~~IVVyC~sG~-rS~~a--A~~L~~lGf 332 (391)
.+.+|+|+|..|. ||..+ +..+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999995 76643 455555554
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=73.35 E-value=12 Score=37.68 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=28.8
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhhHhh---cCCC
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKDKDK---AGIP 257 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~---gHIP 257 (391)
.++..++.+.+.+.+..+||+|+..+|.. ||||
T Consensus 137 g~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 137 GSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 47788999988877889999999999997 7877
No 71
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=70.27 E-value=11 Score=40.24 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=51.5
Q ss_pred cEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHH----HHHHHH-hhhhcCCCCCEEEEEe
Q 016309 240 HLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAE----IVALKI-SYLKRINKGSKIIIMD 314 (391)
Q Consensus 240 ~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~----l~a~~I-~~L~kl~kd~~IVVyC 314 (391)
..+||.|+.++|..||+-. |.| +.-. -++.+|..++.. +.+.+. -+-.....+..+.++.
T Consensus 327 FFiVDcRpaeqynaGHlst----aFh----lDc~-------lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmG 391 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLST----AFH----LDCV-------LMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMG 391 (669)
T ss_pred EEEEeccchhhcccccchh----hhc----ccHH-------HHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEec
Confidence 6899999999999999977 777 4321 123344433322 222111 0111123446677766
Q ss_pred CCCc-----hHHHHHHHHHHcCCCceEEccCccccc
Q 016309 315 SYSD-----SAKIVARVLTSLGFKNCWIVADGFSGR 345 (391)
Q Consensus 315 ~sG~-----rS~~aA~~L~~lGf~nV~vL~GG~~gw 345 (391)
.+.. .-..+|.+|++ |-..|..+.|||...
T Consensus 392 sGr~EED~YmnMviA~FlQK-nk~yVS~~~GGy~~l 426 (669)
T KOG3636|consen 392 SGRDEEDNYMNMVIAMFLQK-NKLYVSFVQGGYKKL 426 (669)
T ss_pred cCcchHHHHHHHHHHHHHhc-CceEEEEecchHHHH
Confidence 5422 33456666655 445688999999833
No 72
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=67.51 E-value=6.4 Score=35.23 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCEEEEEe-C----CCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMD-S----YSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC-~----sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
+++.+++++| . .|..-..+++.|+++|..+...|+||-+
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 4454555555 4 3678889999999999999999999966
No 73
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=62.06 E-value=18 Score=34.44 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=63.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHH----HHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHhhHHHHHhhhhhhhhcccc
Q 016309 101 DAVGSALKPAVDAALPIVKQA----GEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAK 176 (391)
Q Consensus 101 ~~~~~~~k~~~~~a~p~~~~~----~~~a~~~a~p~~~~~~~~a~~a~~~~g~d~~~v~~aa~t~~~~~~~~~~~~~~~~ 176 (391)
+.+.++|.-+++.|.--+-+. .+.++||.-| +..+++++.|++.|.. ..+-+--...+.||+++ +..++
T Consensus 11 ~glkeaL~~g~~~Av~~L~~~dGf~~n~~vrI~lP---~~l~~~~~~Lr~~G~~-~~~d~l~~smNrAAe~A---~~~A~ 83 (202)
T PF13852_consen 11 SGLKEALSVGTDRAVARLGKPDGFLGNPAVRIPLP---EELQKVESTLRKIGLG-SQVDDLELSMNRAAEAA---VPEAA 83 (202)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCchhhccCC---HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH---HHHHH
Confidence 344455555666555444332 3477788777 4477899999988887 44555567788888666 88899
Q ss_pred cchhHHHHHhhhcChHHHHH
Q 016309 177 PIAASTVETISSGDPVVIVG 196 (391)
Q Consensus 177 p~~~~~~~~f~~~~pv~~~~ 196 (391)
|+....|..+.-.|...++.
T Consensus 84 ~if~~AI~~Ms~~DA~~IL~ 103 (202)
T PF13852_consen 84 PIFVDAIKSMSIQDAKGILN 103 (202)
T ss_pred HHHHHHHHhCCHHhHHHHhc
Confidence 99999999999999887654
No 74
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=59.81 E-value=28 Score=31.63 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=33.2
Q ss_pred hhcCCCCCEEEEEeCCCc--hHHHHHHHHHH---cCCCceEEccCccccc
Q 016309 301 LKRINKGSKIIIMDSYSD--SAKIVARVLTS---LGFKNCWIVADGFSGR 345 (391)
Q Consensus 301 L~kl~kd~~IVVyC~sG~--rS~~aA~~L~~---lGf~nV~vL~GG~~gw 345 (391)
+++++++..+|++|..|. .|...|+.|.+ .|..++..+-||-.|.
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 455678999999999984 88889998876 6888899999998755
No 75
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=58.82 E-value=37 Score=28.86 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCCCEEEEEeCCCc-hHHH--HHHHHHHcCCC
Q 016309 305 NKGSKIIIMDSYSD-SAKI--VARVLTSLGFK 333 (391)
Q Consensus 305 ~kd~~IVVyC~sG~-rS~~--aA~~L~~lGf~ 333 (391)
..+.+|+|+|..|. ||.. +++.+...|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 56889999999994 6654 45556666764
No 76
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=53.86 E-value=20 Score=32.56 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=25.6
Q ss_pred CCCCEEEEEeCCCc---hHHHHHHHHHHcCCCceEE
Q 016309 305 NKGSKIIIMDSYSD---SAKIVARVLTSLGFKNCWI 337 (391)
Q Consensus 305 ~kd~~IVVyC~sG~---rS~~aA~~L~~lGf~nV~v 337 (391)
++..+|+++|..|+ ....+++.|.+.||+ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67899999998875 677899999999996 655
No 77
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.09 E-value=25 Score=31.15 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=19.8
Q ss_pred CccCHHHHHHHhhCCCcEEEEcCChhh
Q 016309 224 GELTPAQSLDLITAQNHLMIDIRSEKD 250 (391)
Q Consensus 224 g~ISp~ea~~ll~~~~~vLIDVRs~~E 250 (391)
+.++++++.++-..+=..||--|+..|
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgE 40 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGE 40 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCC
Confidence 468999988877655456888897544
No 78
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.91 E-value=75 Score=30.58 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=53.0
Q ss_pred HHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCc-chhhhhhhhchHHHHH--HHHHHHHhhhhcCC
Q 016309 229 AQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEEL-PSKLKGLVRNAKKVEA--EIVALKISYLKRIN 305 (391)
Q Consensus 229 ~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L-~~~l~~ll~n~~~le~--~l~a~~I~~L~kl~ 305 (391)
.++.+.+. +-++||+-.+.++ .+.-.. ... +|.+.- .+.+...+++.+-+.. .+.+..+..+.+ .
T Consensus 78 ~~l~~~~~--~KIvID~tnp~~~-~~~~~~----~~~----~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~-~ 145 (211)
T COG2085 78 AELRDALG--GKIVIDATNPIEV-NGEPGD----LYL----VPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAK-P 145 (211)
T ss_pred HHHHHHhC--CeEEEecCCCccc-cCCccc----ccc----CCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCC-c
Confidence 34444443 5689999998766 433322 112 444332 2334444444432221 112222222322 2
Q ss_pred CCCEEEEEeCCCchHHHHHHHH-HHcCCCceEEccCccc
Q 016309 306 KGSKIIIMDSYSDSAKIVARVL-TSLGFKNCWIVADGFS 343 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L-~~lGf~nV~vL~GG~~ 343 (391)
..+..++||.+...++.....| ++.||+- +-.|++.
T Consensus 146 ~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~--ld~G~L~ 182 (211)
T COG2085 146 GGRRDVLVAGDDAEAKAVVAELAEDIGFRP--LDAGPLE 182 (211)
T ss_pred CCceeEEEecCcHHHHHHHHHHHHhcCcce--eeccccc
Confidence 2688999999998887655554 5689963 2235554
No 79
>PRK12361 hypothetical protein; Provisional
Probab=48.67 E-value=1.7e+02 Score=31.46 Aligned_cols=18 Identities=0% Similarity=0.159 Sum_probs=13.6
Q ss_pred CCCCEEEEEeCCCc-hHHH
Q 016309 305 NKGSKIIIMDSYSD-SAKI 322 (391)
Q Consensus 305 ~kd~~IVVyC~sG~-rS~~ 322 (391)
..+.+|+|+|..|. ||..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVL 191 (547)
T ss_pred HCCCeEEEECCCCCCcHHH
Confidence 45788999999984 5543
No 80
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=46.88 E-value=28 Score=33.90 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=25.0
Q ss_pred CCEEEEEeCCC---chHHHHHHHHHHcCCCceEEc
Q 016309 307 GSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIV 338 (391)
Q Consensus 307 d~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL 338 (391)
+++|+|+|..| .....+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 46899999764 5888999999999995 6544
No 81
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=44.25 E-value=24 Score=36.56 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCC
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFK 333 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~ 333 (391)
+.++++.+.+|..|..+++.+.+.|++
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~G~~ 202 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHCCCE
Confidence 567899999999999999999889985
No 82
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=43.46 E-value=28 Score=35.76 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceE
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCW 336 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~ 336 (391)
.+.++++...+|..|..+++.|.+.|++ |.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~-V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR-VV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe-EE
Confidence 3567899999999999999999999985 53
No 83
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=42.98 E-value=25 Score=36.48 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCC
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFK 333 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~ 333 (391)
+.++++.-.+|..|..+++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 446777778888999999999999996
No 84
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=42.55 E-value=24 Score=32.11 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=34.3
Q ss_pred hcCCCCCEEEEEeCCCc--hHHHHHHHHHHc---CCCceEEccCccccc
Q 016309 302 KRINKGSKIIIMDSYSD--SAKIVARVLTSL---GFKNCWIVADGFSGR 345 (391)
Q Consensus 302 ~kl~kd~~IVVyC~sG~--rS~~aA~~L~~l---Gf~nV~vL~GG~~gw 345 (391)
++++++..+|++|..|. .|...|..|.+. |..++..+-||-.|.
T Consensus 62 ~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 62 AALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred hhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34567788999999984 888999988764 656788999997744
No 85
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=41.52 E-value=1.5e+02 Score=27.82 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHH
Q 016309 91 SFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVA 155 (391)
Q Consensus 91 ~~~~~~~~~~~~~~~~~k~~~~~a~p~~~~~~~~a~~~a~p~~~~~~~~a~~a~~~~g~d~~~v~ 155 (391)
+-....++.+.++.+.+..|||+++-.+ .+-..+.|+..|+|-+-..
T Consensus 19 e~v~~~~efls~~~~~~~~gis~~l~~l------------------~~i~~dlL~~~Gid~~~lt 65 (177)
T PF14965_consen 19 ENVRAVAEFLSRVTWRFSSGISSALNTL------------------WRIWTDLLDVLGIDGSNLT 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhCccccccc
Confidence 3455666667777777777777766544 5667889999999988443
No 86
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=40.64 E-value=28 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=28.0
Q ss_pred EEEEeCCC-chHHHHHHHHHHc----CCCceEEccCccc
Q 016309 310 IIIMDSYS-DSAKIVARVLTSL----GFKNCWIVADGFS 343 (391)
Q Consensus 310 IVVyC~sG-~rS~~aA~~L~~l----Gf~nV~vL~GG~~ 343 (391)
|+|+|.++ .||..+--.|+++ +-.++.+...|+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~ 39 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTE 39 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESS
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeec
Confidence 68999886 5888888888877 6677889999998
No 87
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=39.63 E-value=48 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=26.4
Q ss_pred CCCCEEEEEeCCC---chHHHHHHHHHHcCCCceEEcc
Q 016309 305 NKGSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIVA 339 (391)
Q Consensus 305 ~kd~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL~ 339 (391)
+++++|+++|..| .....+|+.|...|++ |+.+.
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~~ 79 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLLK 79 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEEc
Confidence 4567899999754 5888999999887874 77653
No 88
>PLN02727 NAD kinase
Probab=39.26 E-value=1.2e+02 Score=35.38 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=20.5
Q ss_pred ccCHHHHHHHhhCCCcEEEEcCChhh
Q 016309 225 ELTPAQSLDLITAQNHLMIDIRSEKD 250 (391)
Q Consensus 225 ~ISp~ea~~ll~~~~~vLIDVRs~~E 250 (391)
.++++++..+.+.+=-.||+.|+..|
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E 293 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIV 293 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCc
Confidence 48999998877654347999998776
No 89
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=39.16 E-value=2.5e+02 Score=25.44 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=17.8
Q ss_pred CCCCEEEEEeCCC-chHHH-HHHHHHHc
Q 016309 305 NKGSKIIIMDSYS-DSAKI-VARVLTSL 330 (391)
Q Consensus 305 ~kd~~IVVyC~sG-~rS~~-aA~~L~~l 330 (391)
..+.+|+|.|..| +||.. ++-.|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999998 46664 34444443
No 90
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=37.53 E-value=44 Score=35.54 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=28.0
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCCceE--EccCccc
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFKNCW--IVADGFS 343 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~nV~--vL~GG~~ 343 (391)
+.++++.+.+|..|..+++.|.+.|++ |. .++-|..
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG~~-v~~l~f~~g~~ 214 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRGSR-VHYCFFNLGGA 214 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcCCE-EEEEEEecCCc
Confidence 457999999999999999999999995 54 3444443
No 91
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.49 E-value=45 Score=35.47 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=24.8
Q ss_pred CCEEEEEeCCC---chHHHHHHHHHHcCCCceEEc
Q 016309 307 GSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIV 338 (391)
Q Consensus 307 d~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL 338 (391)
+++|+|+|..| +....+|+.|...||+ |.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 46899999765 4788999999999996 5543
No 92
>PRK10565 putative carbohydrate kinase; Provisional
Probab=36.15 E-value=52 Score=35.36 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCCEEEEEeCCC---chHHHHHHHHHHcCCCceEEc
Q 016309 305 NKGSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIV 338 (391)
Q Consensus 305 ~kd~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL 338 (391)
++..+|+|+|..| .+...+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 4466899999765 4788999999999996 5543
No 93
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=35.89 E-value=99 Score=28.76 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccc---cccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCC
Q 016309 231 SLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKN---RMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKG 307 (391)
Q Consensus 231 a~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN---~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd 307 (391)
+.++.+.+-..+|=.-+..|+..-.+|+|...... .+.++|..+... ++...... +...-...| ..+
T Consensus 64 L~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~a------Pd~~~~~~-i~~eL~~~L---~~g 133 (168)
T PF05706_consen 64 LERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSA------PDFAAAWQ-ILEELAARL---ENG 133 (168)
T ss_dssp HHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---------HHHHHH-HHHHHHHHH---HTT
T ss_pred HHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCC------CCHHHHHH-HHHHHHHHH---HcC
Confidence 44444444334555777888777667654321110 134577654321 11111111 111111122 458
Q ss_pred CEEEEEeCCC-chHHH-HHHHHHHcC
Q 016309 308 SKIIIMDSYS-DSAKI-VARVLTSLG 331 (391)
Q Consensus 308 ~~IVVyC~sG-~rS~~-aA~~L~~lG 331 (391)
++|+++|.+| +|+.. +|..|.++|
T Consensus 134 ~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 134 RKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 8999999998 47665 666676666
No 94
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=34.00 E-value=1.1e+02 Score=33.35 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=24.8
Q ss_pred CCEEEEEeCCC---chHHHHHHHHHHcCCCceEEc
Q 016309 307 GSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIV 338 (391)
Q Consensus 307 d~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL 338 (391)
.++|+|+|..| +....+|+.|...||+ |.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 36899999765 4778899999999996 5543
No 95
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.99 E-value=69 Score=35.11 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=32.9
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
+.+.+|||+.+.-..+..+|+.|.++||+ ++.|.||-.
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k~ 552 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGKS 552 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCcc
Confidence 45778999998887888999999999995 999999964
No 96
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.29 E-value=80 Score=27.04 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=26.3
Q ss_pred EEEEEeCCC-chHHHHHHHHHHcCCCceEEccCcccc
Q 016309 309 KIIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFSG 344 (391)
Q Consensus 309 ~IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~g 344 (391)
+|+|+|.+. .||..+-..|++++-.++.+...|..+
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~ 38 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV 38 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 588999765 488877777877665567777777753
No 97
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.79 E-value=87 Score=29.86 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=25.2
Q ss_pred CCEEEEEeCCC---chHHHHHHHHHHcCCCceEEc
Q 016309 307 GSKIIIMDSYS---DSAKIVARVLTSLGFKNCWIV 338 (391)
Q Consensus 307 d~~IVVyC~sG---~rS~~aA~~L~~lGf~nV~vL 338 (391)
..+|+++|..| .....+|+.|+..||+ |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 67899999765 4888999999999986 5543
No 98
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=31.76 E-value=79 Score=27.35 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
++++++++.. |..+..++..|...|+++++++.--.+
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 5777888776 557888999999999999988765444
No 99
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=30.96 E-value=79 Score=25.60 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.+.++++||..-.....+.+.|.+.++ ++..+.|++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 63 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGS 63 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCC
Confidence 577899999998888899999988777 4888888865
No 100
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.83 E-value=67 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCEEEEEeCCCchHHHHHHHH----HHcCCCceEEccCccc
Q 016309 307 GSKIIIMDSYSDSAKIVARVL----TSLGFKNCWIVADGFS 343 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L----~~lGf~nV~vL~GG~~ 343 (391)
..+|++.|.+|..+..++..+ .+.|++ +.+-..++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~ 42 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYG 42 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHH
Confidence 468999999998766665554 457885 555555554
No 101
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=28.12 E-value=87 Score=33.54 Aligned_cols=46 Identities=17% Similarity=0.439 Sum_probs=36.7
Q ss_pred HHHhhhhcCCCCCEEEEEeCC---CchHHHHHHHHHHcCCCceEEccCc
Q 016309 296 LKISYLKRINKGSKIIIMDSY---SDSAKIVARVLTSLGFKNCWIVADG 341 (391)
Q Consensus 296 ~~I~~L~kl~kd~~IVVyC~s---G~rS~~aA~~L~~lGf~nV~vL~GG 341 (391)
++++-.+..-++++||+++++ |..+.++.+.|++.|-+.|++-.+.
T Consensus 337 ~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 337 LKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 344444445679999999997 8899999999999999999876543
No 102
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=27.51 E-value=1.1e+02 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=34.4
Q ss_pred HHHhhhhcCCCCCEEEEEeCC---CchHHHHHHHHHHcCCCceEE
Q 016309 296 LKISYLKRINKGSKIIIMDSY---SDSAKIVARVLTSLGFKNCWI 337 (391)
Q Consensus 296 ~~I~~L~kl~kd~~IVVyC~s---G~rS~~aA~~L~~lGf~nV~v 337 (391)
+++.-+.+.-++++|++++++ |..+..+.+.|++.|-++|+.
T Consensus 345 ~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 345 KKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred hhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 344445555678999999987 788999999999999999875
No 103
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=27.40 E-value=80 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHH-H----HHHHcCCCceEEccCc
Q 016309 309 KIIIMDSYSDSAKIVA-R----VLTSLGFKNCWIVADG 341 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA-~----~L~~lGf~nV~vL~GG 341 (391)
+|++.|.+|..+...+ . .+.++|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999997554444 4 45567875 4443333
No 104
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=27.21 E-value=1.9e+02 Score=26.57 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=34.9
Q ss_pred hhcCCCCCEEEEEeCCCc--hHHHHHHHHHH---cCCCceEEccCccccc
Q 016309 301 LKRINKGSKIIIMDSYSD--SAKIVARVLTS---LGFKNCWIVADGFSGR 345 (391)
Q Consensus 301 L~kl~kd~~IVVyC~sG~--rS~~aA~~L~~---lGf~nV~vL~GG~~gw 345 (391)
+.+++++..+|.++-.|. .|..+|+.|.+ .| .++..+-||-+|.
T Consensus 61 l~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 61 LAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 445688999999998884 78888888764 57 7899999998755
No 105
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=27.16 E-value=94 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHcCCCceEEccCcccccHHHHhcC
Q 016309 319 SAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352 (391)
Q Consensus 319 rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aG 352 (391)
.+....+.|++.|++ +..+.=|-. +|..++
T Consensus 129 Tal~L~~~l~~~G~~-a~fvaTGQT---Gimia~ 158 (301)
T PF07755_consen 129 TALELRRALRERGIN-AGFVATGQT---GIMIAG 158 (301)
T ss_dssp HHHHHHHHHHHTT---EEEEE-SHH---HHHCHS
T ss_pred HHHHHHHHHHHcCCC-ceEEecCCc---eEEEec
Confidence 567788999999996 555555666 665543
No 106
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=27.14 E-value=1.3e+02 Score=28.22 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=44.3
Q ss_pred CCCEEEEEeC---CCchHHHHHHHHHHcCCCceEEc--cCcccccHHHHhcCCCCcccccCceeccCCccccccccccCC
Q 016309 306 KGSKIIIMDS---YSDSAKIVARVLTSLGFKNCWIV--ADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFG 380 (391)
Q Consensus 306 kd~~IVVyC~---sG~rS~~aA~~L~~lGf~nV~vL--~GG~~gwraW~~aGLpv~s~~~s~~el~~~sr~~p~~~~~~~ 380 (391)
+++.|++++. +|.....+.+.|++.|-++++.+ -..-.+.+.-.++.-.+.-|-..+.+-|....||=|+.|-||
T Consensus 123 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~G 202 (209)
T PRK00129 123 DERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAG 202 (209)
T ss_pred CCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCcc
Confidence 5678888874 58888899999999998887532 222222223333333334444455455555555555555443
No 107
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=26.63 E-value=1.1e+02 Score=31.44 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
....+++|||++-..+..++..|...|++ +..+.|++.
T Consensus 253 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 253 EWPDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 34578999999988999999999999995 888999875
No 108
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=26.58 E-value=42 Score=34.08 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.1
Q ss_pred ccCHHHHHHHhh------CCCcEEEEcCChhhHhhcCCCC
Q 016309 225 ELTPAQSLDLIT------AQNHLMIDIRSEKDKDKAGIPR 258 (391)
Q Consensus 225 ~ISp~ea~~ll~------~~~~vLIDVRs~~Ef~~gHIPG 258 (391)
.++++++.++++ +.+..+||+|++. |+-.++|+
T Consensus 278 ~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 278 EYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred ccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 699999998873 2468999999988 99999987
No 109
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=26.38 E-value=1.9e+02 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.5
Q ss_pred cCCCCCEEEEEeCCCc--hHHHHHHHHHH---cCCCceEEccCccccc
Q 016309 303 RINKGSKIIIMDSYSD--SAKIVARVLTS---LGFKNCWIVADGFSGR 345 (391)
Q Consensus 303 kl~kd~~IVVyC~sG~--rS~~aA~~L~~---lGf~nV~vL~GG~~gw 345 (391)
+++ +..+|++|..|. .|..+|+.|.+ .| .++..+-||-.|.
T Consensus 62 ~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 62 AIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred hCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 345 568899998884 88899999975 45 5788899997744
No 110
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=26.37 E-value=1.2e+02 Score=31.11 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
....+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 35678999999998999999999999995 888999986
No 111
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=25.97 E-value=86 Score=26.93 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=24.4
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCceEEccCccc
Q 016309 310 IIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 310 IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
|+|+|.+. .||..+...|+++.=.++.+...|+.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~ 35 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTG 35 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCccc
Confidence 57888765 48888777887754335777788877
No 112
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=25.61 E-value=94 Score=32.51 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHcCCC
Q 016309 309 KIIIMDSYSDSAKIVARVLTSLGFK 333 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA~~L~~lGf~ 333 (391)
+++++-.+|..|..++|.+.+.|.+
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG~~ 201 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRGVE 201 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcCCE
Confidence 4666667788888888888888885
No 113
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=25.58 E-value=81 Score=31.26 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=33.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCC-ceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFK-NCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~-nV~vL~GG~~ 343 (391)
.++.+++++|++-..+..++..|++.|++ ++..+.|++.
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 45789999999988899999999998874 6889999985
No 114
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=25.37 E-value=76 Score=28.99 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCCCEEEEEeCCCc-hHHH--HHHHHHHcCCC
Q 016309 305 NKGSKIIIMDSYSD-SAKI--VARVLTSLGFK 333 (391)
Q Consensus 305 ~kd~~IVVyC~sG~-rS~~--aA~~L~~lGf~ 333 (391)
.++++|+|.|..|. ||.. +|+.|...|..
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 45779999999984 6553 45677765543
No 115
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=63 Score=32.00 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred CcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCc
Q 016309 239 NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSD 318 (391)
Q Consensus 239 ~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~ 318 (391)
+.+++|+.+|.++- .|+-+ +++ ++..+++||..-.
T Consensus 165 Dav~LDmp~PW~~l-e~~~~----~Lk----------------------------------------pgg~~~~y~P~ve 199 (256)
T COG2519 165 DAVFLDLPDPWNVL-EHVSD----ALK----------------------------------------PGGVVVVYSPTVE 199 (256)
T ss_pred CEEEEcCCChHHHH-HHHHH----HhC----------------------------------------CCcEEEEEcCCHH
Q ss_pred hHHHHHHHHHHcCCCceEEcc
Q 016309 319 SAKIVARVLTSLGFKNCWIVA 339 (391)
Q Consensus 319 rS~~aA~~L~~lGf~nV~vL~ 339 (391)
...+..+.|++.||.++...+
T Consensus 200 Qv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 200 QVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HHHHHHHHHHhcCccchhhhe
No 116
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.11 E-value=1e+02 Score=33.60 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
..+.+++|||++-..+..+++.|.+.||+ +..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 45678999999988999999999999995 888999876
No 117
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=4.5e+02 Score=22.68 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhcC
Q 016309 134 SDATKKAQEAIQSTG 148 (391)
Q Consensus 134 ~~~~~~a~~a~~~~g 148 (391)
.++.|++++.|+.+|
T Consensus 47 ~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 47 ESALKEARDRLGDTG 61 (104)
T ss_pred HHHHHHHHHHHHhhh
Confidence 445788888887766
No 118
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=24.47 E-value=1.1e+02 Score=32.65 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 307 GSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 307 d~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
...+||+|+....+..+++.|...||+ +..+.|++.
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 346999999999999999999999995 999999976
No 119
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.08 E-value=89 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=23.6
Q ss_pred EEEEEeCCCchHHHHHHHHH----HcCCCceEEccCccc
Q 016309 309 KIIIMDSYSDSAKIVARVLT----SLGFKNCWIVADGFS 343 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA~~L~----~lGf~nV~vL~GG~~ 343 (391)
+|++.|.+|..+..+++.++ +.|++ +.+-..++.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~ 40 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITAT 40 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHH
Confidence 69999999987767666554 57885 555444444
No 120
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.90 E-value=91 Score=33.03 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=33.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
..+..+||+|+....+...+-.|+.+||. ...|.|-+.
T Consensus 298 ~~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqms 335 (476)
T KOG0330|consen 298 LAGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMS 335 (476)
T ss_pred hcCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhh
Confidence 45688999999999999999999999995 677888876
No 121
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.71 E-value=1e+02 Score=25.30 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred EEEEEeCCCch-HHHHH----HHHHHcCCCceEEccCccc
Q 016309 309 KIIIMDSYSDS-AKIVA----RVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 309 ~IVVyC~sG~r-S~~aA----~~L~~lGf~nV~vL~GG~~ 343 (391)
+|++.|.+|.. |..++ +.|.+.|++ +.+....+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVN 42 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHH
Confidence 69999999974 33333 455668885 555554554
No 122
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.53 E-value=80 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=24.4
Q ss_pred EEEEEeCCCchHHHHHHHHH----HcCCCceEEccCccc
Q 016309 309 KIIIMDSYSDSAKIVARVLT----SLGFKNCWIVADGFS 343 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA~~L~----~lGf~nV~vL~GG~~ 343 (391)
+|++.|.+|..|..+++.++ +.|++ +.+...++.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~ 39 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYG 39 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHH
Confidence 48999999987777666554 57885 666666655
No 123
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=23.51 E-value=97 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=19.5
Q ss_pred CEEEEEeCCCchHHHHHHHH----HHcCCC
Q 016309 308 SKIIIMDSYSDSAKIVARVL----TSLGFK 333 (391)
Q Consensus 308 ~~IVVyC~sG~rS~~aA~~L----~~lGf~ 333 (391)
++|+++|..|..+...+..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 47999999999887777444 346765
No 124
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=23.16 E-value=5.5e+02 Score=28.58 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 016309 98 KVLDAVGSALKPAVDAALPIVKQAGEEA 125 (391)
Q Consensus 98 ~~~~~~~~~~k~~~~~a~p~~~~~~~~a 125 (391)
=++..+.++++|-+..+.-.++.+..+-
T Consensus 416 fVfs~laPfi~Pii~q~~~~L~~gSs~V 443 (606)
T PF07217_consen 416 FVFSLLAPFIRPIIKQVSSELKTGSSEV 443 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3566677888887777776666555543
No 125
>PRK10126 tyrosine phosphatase; Provisional
Probab=23.09 E-value=1.2e+02 Score=26.71 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=26.5
Q ss_pred CEEEEEeCCC-chHHHHHHHHHHcCCCceEEccCccc
Q 016309 308 SKIIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 308 ~~IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.+|+|+|.+. .||..+-..|++++ .++.+...|..
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~ 38 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLG 38 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeecc
Confidence 4799999876 58988888888775 34666777776
No 126
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=23.08 E-value=1.2e+02 Score=31.59 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.....+++||++-..+..+++.|.+.|++ +..+.|++.
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 34567999999988999999999999995 888889987
No 127
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.03 E-value=1.1e+02 Score=31.83 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=32.6
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
....+++|||++-..+..+++.|.+.|++ +..+.|++.
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 34568999999988899999999999995 788889876
No 128
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.63 E-value=9.4e+02 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.136 Sum_probs=11.8
Q ss_pred HHhhHHHHHhhhhhhhhcccc
Q 016309 156 TAAKTVADAAQQISKVIGEAK 176 (391)
Q Consensus 156 ~aa~t~~~~~~~~~~~~~~~~ 176 (391)
.|-+|+.++-+++.++=++.+
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLE 1664 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666665544444
No 129
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.46 E-value=1.3e+02 Score=31.07 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceE
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCW 336 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~ 336 (391)
.++.+|++...+|..|..++..|++.||+ |.
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G~~-V~ 33 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAGYE-VT 33 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcCCe-EE
Confidence 56788999999999999999999999996 43
No 130
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.36 E-value=7e+02 Score=23.95 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 016309 65 TLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSA 106 (391)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (391)
-.+++++-..|..|.+.+.+...-.....+....--+.+...
T Consensus 22 Gy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 22 GYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999888865555544444444444333
No 131
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.23 E-value=1.6e+02 Score=24.25 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=27.3
Q ss_pred CCCCEEEEEe---CCCchHHHHHHHHHHcCCCceEE
Q 016309 305 NKGSKIIIMD---SYSDSAKIVARVLTSLGFKNCWI 337 (391)
Q Consensus 305 ~kd~~IVVyC---~sG~rS~~aA~~L~~lGf~nV~v 337 (391)
.++++|++++ .+|.....+.+.|++.|.+.+..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 4688999987 57888899999999999886653
No 132
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.19 E-value=1.1e+02 Score=32.18 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.+++..||||++-..+..++..|++.|+. +..+.||+.
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 45677899999998999999999999995 778889986
No 133
>PRK13530 arsenate reductase; Provisional
Probab=21.84 E-value=1.6e+02 Score=25.57 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=25.7
Q ss_pred CEEEEEeCCC-chHHHHHHHHHHcCCCceEEccCccc
Q 016309 308 SKIIIMDSYS-DSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 308 ~~IVVyC~sG-~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
++|+|+|.+. .||..+-.+|++++=+++.+...|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4799999776 48877777776653345777788875
No 134
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.50 E-value=1.7e+02 Score=28.10 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCEEEEEeC---CCchHHHHHHHHHHc-CCCceEEc-----cCcccccHHHHhcCCCCcccccCceeccCCcccccccc
Q 016309 306 KGSKIIIMDS---YSDSAKIVARVLTSL-GFKNCWIV-----ADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAA 376 (391)
Q Consensus 306 kd~~IVVyC~---sG~rS~~aA~~L~~l-Gf~nV~vL-----~GG~~gwraW~~aGLpv~s~~~s~~el~~~sr~~p~~~ 376 (391)
+++.+++.+. .|.....+.+.|++. |-+|+.++ ..|++ ...+..-.++-|-..+.+-|....||=|+.
T Consensus 123 ~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAapeGi~---~v~~~~p~v~I~ta~iD~~Lne~gYIvPGL 199 (210)
T COG0035 123 DERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAPEGIK---AVEKAHPDVEIYTAAIDEGLNEKGYIVPGL 199 (210)
T ss_pred cCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEEEEEecHHHHH---HHHHhCCCCeEEEEEeccccccCCCCccCC
Confidence 4678888885 588888999999999 77786643 35666 777766677777777777566666666666
Q ss_pred ccC
Q 016309 377 RRF 379 (391)
Q Consensus 377 ~~~ 379 (391)
|-+
T Consensus 200 GDa 202 (210)
T COG0035 200 GDA 202 (210)
T ss_pred Ccc
Confidence 643
No 135
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.38 E-value=1.3e+02 Score=29.39 Aligned_cols=39 Identities=26% Similarity=0.564 Sum_probs=26.0
Q ss_pred CCCCEEEEEeCCCchHHH-----HHHHHHHcCCCceEEc-cCccc
Q 016309 305 NKGSKIIIMDSYSDSAKI-----VARVLTSLGFKNCWIV-ADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~-----aA~~L~~lGf~nV~vL-~GG~~ 343 (391)
++++.+|++|.+...... .-..|...||+||++- ..||.
T Consensus 135 ~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP 179 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYP 179 (265)
T ss_pred CcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 578999999987542222 2235677899998863 24555
No 136
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=21.29 E-value=1.4e+02 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCCCEEEEEeCCCc-hHHH--HHHHHHHcCCC
Q 016309 305 NKGSKIIIMDSYSD-SAKI--VARVLTSLGFK 333 (391)
Q Consensus 305 ~kd~~IVVyC~sG~-rS~~--aA~~L~~lGf~ 333 (391)
.++.+|+|+|..|. ||.. ++..+...|++
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 46889999999995 6553 44555666764
No 137
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.27 E-value=90 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=16.5
Q ss_pred EEEEEeCCCc-hHHHHHHHHHH----cCCC
Q 016309 309 KIIIMDSYSD-SAKIVARVLTS----LGFK 333 (391)
Q Consensus 309 ~IVVyC~sG~-rS~~aA~~L~~----lGf~ 333 (391)
+++++|..|. .+..+...|++ .|+.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 3789999994 55555555554 5664
No 138
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.20 E-value=96 Score=25.52 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=23.3
Q ss_pred EEEEEeCCCchHHHHHHHH----HHcCCCceEEccCccc
Q 016309 309 KIIIMDSYSDSAKIVARVL----TSLGFKNCWIVADGFS 343 (391)
Q Consensus 309 ~IVVyC~sG~rS~~aA~~L----~~lGf~nV~vL~GG~~ 343 (391)
+|++.|.+|..+..+++.+ .+.|++ +.+-..++.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~ 38 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPES 38 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHH
Confidence 4899999998766666554 457885 555555554
No 139
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.17 E-value=1.2e+02 Score=33.19 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=33.5
Q ss_pred CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.++...||||++-..+..+++.|.+.|+. +..+.||+.
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 46778999999988999999999999995 888889986
No 140
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=21.14 E-value=1.7e+02 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCEEEEEeCCC--chHHHHHHHHHHcCCCce
Q 016309 307 GSKIIIMDSYS--DSAKIVARVLTSLGFKNC 335 (391)
Q Consensus 307 d~~IVVyC~sG--~rS~~aA~~L~~lGf~nV 335 (391)
+-+|-|+-.+| ..+.+++..|+..||+.+
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCcee
Confidence 44677776665 488999999999999843
No 141
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=21.13 E-value=1.2e+02 Score=26.07 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=25.9
Q ss_pred EEEEEeCCC-chHHHHHHHHHHcCCC-ceEEccCccc
Q 016309 309 KIIIMDSYS-DSAKIVARVLTSLGFK-NCWIVADGFS 343 (391)
Q Consensus 309 ~IVVyC~sG-~rS~~aA~~L~~lGf~-nV~vL~GG~~ 343 (391)
+|+|+|.+. .||..+...|+++.-+ ++.+...|+.
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~ 38 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTS 38 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCC
Confidence 689999776 4888777777775433 6778888876
No 142
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.05 E-value=1.9e+02 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCCEEEEEeCCCchH-HHHHHHHHHcCCC
Q 016309 306 KGSKIIIMDSYSDSA-KIVARVLTSLGFK 333 (391)
Q Consensus 306 kd~~IVVyC~sG~rS-~~aA~~L~~lGf~ 333 (391)
.+.+++++-+++.++ ...++.|+++||+
T Consensus 29 ~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 29 RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 578999999998765 7889999999996
No 143
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.90 E-value=1.1e+02 Score=24.50 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=25.0
Q ss_pred CCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCccc
Q 016309 306 KGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFS 343 (391)
Q Consensus 306 kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~ 343 (391)
.+.+|++.. .. -.......|.+++.++++++ ||-.
T Consensus 49 ~~~PIll~~-~~-l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN-NS-LPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEEC-CC-CCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 355666665 44 34678888999999999887 7754
No 144
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=20.72 E-value=2.2e+02 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred hchHHHHHHHHHHHHhhhhcCCCCCEEEEEeCCCchHHHHHHHHHH--cCCCceEEccCcccccHHHHhcCCCCcccc
Q 016309 284 RNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTS--LGFKNCWIVADGFSGRRGWLQSRLGSDSYN 359 (391)
Q Consensus 284 ~n~~~le~~l~a~~I~~L~kl~kd~~IVVyC~sG~rS~~aA~~L~~--lGf~nV~vL~GG~~gwraW~~aGLpv~s~~ 359 (391)
-|.+|+..++....-.-+.. -++-.++++|++|..+-..+-.|.+ -+.+++..|+--|- +...+-..+.+|+
T Consensus 79 tN~RFlhd~lv~cA~~l~st-lPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYH---GHl~s~mE~SPYK 152 (452)
T KOG1403|consen 79 TNNRFLHDELVQCARTLTST-LPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYH---GHLQSVMEVSPYK 152 (452)
T ss_pred ccchhhHHHHHHHHHHHhhc-CCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhc---cceeeeeecccee
Confidence 35566655544321111122 3447799999999877777776665 36778888887776 5555555555555
Done!