Query 016310
Match_columns 391
No_of_seqs 172 out of 286
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 100.0 4.1E-62 9E-67 437.6 16.9 152 196-353 2-155 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 100.0 1E-59 2.2E-64 421.1 14.7 153 196-353 1-155 (155)
3 COG3440 Predicted restriction 92.8 0.0011 2.4E-08 66.1 -10.0 137 205-350 11-149 (301)
4 PF08207 EFP_N: Elongation fac 42.4 75 0.0016 24.3 5.3 34 316-349 6-40 (58)
5 PLN03106 TCP2 Protein TCP2; Pr 32.7 36 0.00078 35.8 2.8 91 248-374 32-133 (447)
6 PF12218 End_N_terminal: N ter 32.1 21 0.00046 28.9 0.8 49 287-355 10-59 (67)
7 PRK03999 translation initiatio 20.2 2.4E+02 0.0052 25.1 5.3 39 315-353 11-53 (129)
8 PF06874 FBPase_2: Firmicute f 20.0 2.8E+02 0.0061 31.3 6.8 93 182-306 511-609 (640)
9 PF13280 WYL: WYL domain 18.9 2.1E+02 0.0045 24.2 4.5 60 289-352 5-66 (172)
10 PF13356 DUF4102: Domain of un 14.1 3.5E+02 0.0075 21.8 4.5 39 320-364 16-66 (89)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=100.00 E-value=4.1e-62 Score=437.56 Aligned_cols=152 Identities=47% Similarity=0.769 Sum_probs=144.7
Q ss_pred CCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeecc-CCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCC
Q 016310 196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEE-GGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSK 274 (391)
Q Consensus 196 ~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~-~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~ 274 (391)
.|+||+||||+|||+|++|+||+++|||+++|+||||++. +|+++|+|||+||+|+||+|+|| +|+|||+||++. +
T Consensus 2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd-~liYtG~gg~~~--~ 78 (155)
T smart00466 2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGD-VLIYTGQGGRDM--T 78 (155)
T ss_pred CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCC-EEEEEccCCccC--C
Confidence 5889999999999999999999999999999999999984 57788999999999999999999 999999999987 3
Q ss_pred CCCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCC
Q 016310 275 DAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQ 353 (391)
Q Consensus 275 ~kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQ 353 (391)
++|+.||+|++||+||++||++++|||||||+++. +.++|.++|||||||+|++||.|+|++|+.||||+| |+|||
T Consensus 79 ~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~---~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ 155 (155)
T smart00466 79 HGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGY---SKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ 155 (155)
T ss_pred CCCccccEecchhHHHHHHHhcCCceEEEcccccc---CCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence 58999999999999999999999999999999963 358999999999999999999999999999999999 99999
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=100.00 E-value=1e-59 Score=421.11 Aligned_cols=153 Identities=52% Similarity=0.797 Sum_probs=127.3
Q ss_pred CCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCCC
Q 016310 196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKD 275 (391)
Q Consensus 196 ~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~~ 275 (391)
+|+|||||||+|||||++|+||+++|||+++|+||||++.+|.++|+|||+||+|+||+|+|| +|||||+||++..+ .
T Consensus 1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd-~l~YtG~gg~~~~~-~ 78 (155)
T PF02182_consen 1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGD-VLIYTGQGGNDLSG-N 78 (155)
T ss_dssp -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSS-EEEEE-SSSB--TT-T
T ss_pred CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCC-EEEEEcCCCccccc-c
Confidence 478999999999999999999999999999999999999999999999999999999999999 99999999999876 4
Q ss_pred CCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceE-EEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCC
Q 016310 276 AVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVV-YVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQ 353 (391)
Q Consensus 276 kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kg-YrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQ 353 (391)
+|.+||+|++||+||++|+++++|||||||++..+ .++|..+ |||||||+|++||.+++++|+.||||+| |+|||
T Consensus 79 ~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~---~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ 155 (155)
T PF02182_consen 79 KQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKS---SYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ 155 (155)
T ss_dssp -B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGG---TTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred cccccccccchhHHHHHHHhcCCCeEEEeecCCCC---ccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence 69999999999999999999999999999999865 3788888 9999999999999999999999999999 99999
No 3
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=92.82 E-value=0.0011 Score=66.09 Aligned_cols=137 Identities=9% Similarity=-0.158 Sum_probs=109.2
Q ss_pred CCCCceech-HhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCCCCCcccccc
Q 016310 205 VEVGDKFQW-RFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKL 283 (391)
Q Consensus 205 V~VGD~F~~-R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~~kq~~DQkL 283 (391)
+..+..+-. +.+..-.+.|-|++.++.+....+ +.+++.+|.|+++.+.+. +..||+-|+....+ .+..=+.+
T Consensus 11 f~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~~~---~~~~~n~~~~~~e~~~~f-~~l~~~~g~~~~~~--~~~~p~~~ 84 (301)
T COG3440 11 FSQRNASLKIFGGNREAAPHKPILLLDVGRKIST---FFITENQGIYETELIEPF-IQLWSFFGPKLQKY--GVDAPFEL 84 (301)
T ss_pred hhhhhhhhhhcccccccCCcCceeehhhHhhhhc---ccccccccccchhccchH-HHHHhhcCcccccC--CCCCchHH
Confidence 333333433 555666788999999999987766 789999999999999999 99999999863221 23333456
Q ss_pred ccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ec
Q 016310 284 IQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RS 350 (391)
Q Consensus 284 erGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-Rl 350 (391)
..|+.++..+++.+-+-++||+....+ ...+-..+-|-|+|.+..-|.++.-.+.+++.|.. ++
T Consensus 85 l~~d~~~h~~~k~~~~~l~~~~~~~~~---e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~ 149 (301)
T COG3440 85 LQGDGKWHLDIKEGFDGLSIRTLPTEK---EFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL 149 (301)
T ss_pred hhccchhhhcccccCCccccCCCccHh---hhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 789999999999999999999986543 34566788899999999999999999999999988 75
No 4
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=42.37 E-value=75 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCceEEEEcc-eeeEEEEEEeeCCCCcEEEEEeee
Q 016310 316 KNNVVYVYDG-LYFVERYWQARGPFGNLVFKFLLR 349 (391)
Q Consensus 316 ~p~kgYrYDG-LY~Vv~~W~ekGk~G~~V~KFkLR 349 (391)
.++..+.||| ||.|.++-..+...|...++.+||
T Consensus 6 r~G~~i~~~g~~~~V~~~~~~k~gkg~a~v~~klk 40 (58)
T PF08207_consen 6 RKGMVIEIDGEPYVVLDFQHVKPGKGGAFVRVKLK 40 (58)
T ss_dssp -TTSEEEETTEEEEEEEEEEECCTTSSSEEEEEEE
T ss_pred cCCCEEEECCEEEEEEEEEEECCCCCCeEEEEEEE
Confidence 4567788887 899999977766668888999984
No 5
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=32.72 E-value=36 Score=35.84 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCccCCCCCCccEEEEEcCCCCCCCCCCCCccccccccccHHHHhhhhc-CCceEEEeccccCccccCcCCceEEEEcce
Q 016310 248 GRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEA-KTPVRVIRGIKNLVASVMKKNNVVYVYDGL 326 (391)
Q Consensus 248 GgYeDD~D~GD~~LiYTG~GG~d~~~~~kq~~DQkLerGNlAL~~S~~~-~~PVRVIRG~k~~s~~~~~~p~kgYrYDGL 326 (391)
+.|.||+++|+ |+-+|.||- +.+....|.+ ...|||-|..-.+. .-.|+++--
T Consensus 32 ~~~~~~ee~g~--~~~~~~~g~-----------------~~~~~~~w~~~~ri~rvsRasg~KD-----RHSKI~Ta~-- 85 (447)
T PLN03106 32 GQYPDNEEDGE--VVDGGGGGS-----------------VNNRLRRWHHSSRIIRVSRASGGKD-----RHSKVLTSK-- 85 (447)
T ss_pred cccCccccccc--eeecCCCCc-----------------cchhhhccccCCceeeeecccCCCC-----cccceeccc--
Confidence 45999988887 444454432 2234445555 77889888764332 234444333
Q ss_pred eeEEEEEEeeCCCCcEEE--------EEee-ecCC-CCCCchhhHHHHhhhhhhhcCC
Q 016310 327 YFVERYWQARGPFGNLVF--------KFLL-RSLG-QKDYRLDEMREEQSKSMIKNKP 374 (391)
Q Consensus 327 Y~Vv~~W~ekGk~G~~V~--------KFkL-RlpG-Qp~l~~~~~~~~~s~~~lk~~~ 374 (391)
|.....|- -|.| ++-| ..+--+-++...+|+.+|+..+
T Consensus 86 ----------G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~ 133 (447)
T PLN03106 86 ----------GLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELP 133 (447)
T ss_pred ----------CCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhh
Confidence 33333221 2566 4333 2233345566667777777655
No 6
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=32.15 E-value=21 Score=28.88 Aligned_cols=49 Identities=24% Similarity=0.158 Sum_probs=25.7
Q ss_pred cHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCCCC
Q 016310 287 NLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQKD 355 (391)
Q Consensus 287 NlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQp~ 355 (391)
..||-.+++...+=++|-|.-. .|+|.. -+..+-|.=-+|.. |+||||-
T Consensus 10 t~A~~a~l~a~~~g~~IDg~Gl-----------------TykVs~---lPd~srf~N~rF~~eri~gqpl 59 (67)
T PF12218_consen 10 TAAITAALEASPVGRKIDGAGL-----------------TYKVSS---LPDISRFKNARFVYERIPGQPL 59 (67)
T ss_dssp HHHHHHHHHHS-TTS-EE-TT------------------EEEESS------GGGEES-EEEE-SSTT--E
T ss_pred HHHHHHHHhccCCCeEEecCCc-----------------eEEEee---CccHHhhccceEEEeecCCCce
Confidence 4577777777666666666521 244433 33455566678999 9999994
No 7
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=20.17 E-value=2.4e+02 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=29.6
Q ss_pred cCCceEEEEcc-eeeEEEEE-EeeCCCCcEEEEEee-ec-CCC
Q 016310 315 KKNNVVYVYDG-LYFVERYW-QARGPFGNLVFKFLL-RS-LGQ 353 (391)
Q Consensus 315 ~~p~kgYrYDG-LY~Vv~~W-~ekGk~G~~V~KFkL-Rl-pGQ 353 (391)
..++....||| +|+|+++- .-+|+.|....+.+| -+ .|+
T Consensus 11 lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~ 53 (129)
T PRK03999 11 LKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQ 53 (129)
T ss_pred ccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCC
Confidence 45677889999 99999974 556676888899999 44 443
No 8
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=19.98 E-value=2.8e+02 Score=31.28 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=63.6
Q ss_pred HHHHHhhcCcccCCCCcc-cCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCcc----CC-CC
Q 016310 182 AAKLLKDEKRWINTPKRL-GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYT----ND-GG 255 (391)
Q Consensus 182 A~~~m~~~~~~~n~~kri-G~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYe----DD-~D 255 (391)
+.++|.+.|+....+-+| |||| |.+. .|=+=.+.+| --||+-||+. .. -=
T Consensus 511 c~~IL~EFgl~~~~~hIINGHvP-Vk~k-------------------~GEsPIKa~G----kl~VIDGGfskAYqk~TGI 566 (640)
T PF06874_consen 511 CDKILEEFGLDPERGHIINGHVP-VKVK-------------------KGESPIKANG----KLIVIDGGFSKAYQKTTGI 566 (640)
T ss_pred HHHHHHHhCCCCCCCeEECCccc-cccC-------------------CCCCCccCCC----EEEEEcChhhhhhccccCc
Confidence 567888888887777777 9988 3321 2333344566 5688888853 21 12
Q ss_pred CCccEEEEEcCCCCCCCCCCCCccccccccccHHHHhhhhcCCceEEEecc
Q 016310 256 YCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGI 306 (391)
Q Consensus 256 ~GD~~LiYTG~GG~d~~~~~kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~ 306 (391)
.|. +|+|.-.|=+ -+++|.++.--.|++...+.-.-.|||.-.
T Consensus 567 AGY-TLiyNS~gl~-------L~~H~pF~s~e~ai~~~~Di~s~~~vve~~ 609 (640)
T PF06874_consen 567 AGY-TLIYNSYGLQ-------LVAHQPFESVEDAIEENTDIISTSRVVEKE 609 (640)
T ss_pred cce-EEEecCCcce-------eccCCCCCCHHHHHhcCCCCCcceEEEecc
Confidence 478 9999887743 346677888888888888877777777654
No 9
>PF13280 WYL: WYL domain
Probab=18.89 E-value=2.1e+02 Score=24.22 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHHhhhhcCCceEEEeccc-cCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCC
Q 016310 289 ALKNSMEAKTPVRVIRGIK-NLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLG 352 (391)
Q Consensus 289 AL~~S~~~~~PVRVIRG~k-~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpG 352 (391)
.|.+++..+..|++-.... .........|-..|.++|-|-+..+-.++ + ....|+| |+..
T Consensus 5 ~l~~Ai~~~~~i~~~Y~~~~~~~~~~~v~P~~l~~~~~~~Yl~~~~~~~--~--~~r~frldrI~~ 66 (172)
T PF13280_consen 5 TLLQAIREKRQIRFDYRSASSEGKERRVDPYRLYYYNGRWYLIAYDRER--E--EFRTFRLDRIRS 66 (172)
T ss_pred HHHHHHHCCCEEEEEEECCCCCcEEEEEEEEEEEEECCEEEEEEEeccc--c--ccccccccceEE
Confidence 6889999999999987662 11112234577788888887777754432 2 3567888 8654
No 10
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=14.07 E-value=3.5e+02 Score=21.76 Aligned_cols=39 Identities=38% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEc---ceeeEEEEEEeeCCCCcEEEEEeeecCCC---------CCCchhhHHHH
Q 016310 320 VYVYD---GLYFVERYWQARGPFGNLVFKFLLRSLGQ---------KDYRLDEMREE 364 (391)
Q Consensus 320 gYrYD---GLY~Vv~~W~ekGk~G~~V~KFkLRlpGQ---------p~l~~~~~~~~ 364 (391)
...+| |||..+. ++|...|.|+.|..|. |.+.+.+-++.
T Consensus 16 ~~~~D~~~GL~l~v~------~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~ 66 (89)
T PF13356_consen 16 YEVSDGVPGLYLRVT------PSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREK 66 (89)
T ss_dssp EEEEEESTTEEEEE-------TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHH
T ss_pred EEEEeCCCCcEEEEE------eCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHH
Confidence 45566 8888775 5666666655554444 45555554443
Done!