Query 016310
Match_columns 391
No_of_seqs 172 out of 286
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q0b_X Histone-lysine N-methyl 100.0 7.3E-65 2.5E-69 458.5 17.1 162 198-361 2-166 (167)
2 3oln_A E3 ubiquitin-protein li 100.0 1.2E-61 4.1E-66 455.4 19.1 168 191-363 22-209 (231)
3 3fde_A E3 ubiquitin-protein li 100.0 1.4E-60 4.7E-65 444.2 18.7 161 195-360 3-181 (212)
4 2pb7_A E3 ubiquitin-protein li 100.0 2.8E-60 9.7E-65 448.2 19.0 170 189-363 4-192 (239)
5 3jtz_A Integrase; four strande 33.9 62 0.0021 25.6 5.1 35 324-364 24-67 (88)
6 3ju0_A Phage integrase; four s 18.2 1.3E+02 0.0044 24.7 4.3 35 324-364 24-67 (108)
7 4f0q_A Restriction endonucleas 17.4 6.6E+02 0.023 25.8 10.1 120 224-351 62-212 (456)
8 2cio_B Inhibitor of cysteine p 15.8 2.3E+02 0.0077 23.5 5.3 62 296-358 11-97 (121)
9 2og0_A Excisionase; protein-DN 13.9 21 0.0007 26.3 -1.5 23 200-222 28-52 (52)
10 1bkb_A Translation initiation 12.2 3.1E+02 0.01 23.2 5.2 39 315-353 14-56 (136)
No 1
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=100.00 E-value=7.3e-65 Score=458.51 Aligned_cols=162 Identities=51% Similarity=0.897 Sum_probs=142.2
Q ss_pred cccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccC-CceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCC-CCC
Q 016310 198 RLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEG-GKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKV-SKD 275 (391)
Q Consensus 198 riG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~-G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~-~~~ 275 (391)
+|||||||+|||||++|+||+++|||+++|+||||++.+ |+++|+|||+||+|+||+|+|| +|+|||+||++.. +++
T Consensus 2 ~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~~~~gA~SIV~SggY~Dd~D~gd-~l~YTG~GG~~~~~~~~ 80 (167)
T 3q0b_X 2 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSD-VLIYTGQGGNVGKKKNN 80 (167)
T ss_dssp CCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSSSCEEEEEEEESSSTTCEECSSS-EEEEECSCTTCC-----
T ss_pred cccCCCCCcCccEecchHHHhHhCcCCCccCCeecccccCCCcceEEEEeCCCcccccCCCC-EEEEECCCCCccccccc
Confidence 689999999999999999999999999999999999875 7889999999999999999999 9999999999886 567
Q ss_pred CCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCCC
Q 016310 276 AVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQK 354 (391)
Q Consensus 276 kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQp 354 (391)
+|+.||+|++||+||++|+++++|||||||+++.. .+.++|.++|||||||+|++||.|+|++|+.||||+| |+||||
T Consensus 81 ~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~-~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQp 159 (167)
T 3q0b_X 81 EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTT-LQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159 (167)
T ss_dssp CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC-----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEECTTSC
T ss_pred cccccCccchhHHHHHHHHHcCCcEEEEEeecccc-cCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEEcCCCC
Confidence 89999999999999999999999999999998742 1357899999999999999999999999999999999 999999
Q ss_pred CCchhhH
Q 016310 355 DYRLDEM 361 (391)
Q Consensus 355 ~l~~~~~ 361 (391)
+|++++|
T Consensus 160 ~l~~~~~ 166 (167)
T 3q0b_X 160 ELPWKEV 166 (167)
T ss_dssp CCCC---
T ss_pred CCChhhc
Confidence 9999986
No 2
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=1.2e-61 Score=455.44 Aligned_cols=168 Identities=31% Similarity=0.454 Sum_probs=147.9
Q ss_pred cccCCCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCC
Q 016310 191 RWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNP 270 (391)
Q Consensus 191 ~~~n~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d 270 (391)
+++++.++|||||||+|||||+||+||+++|||+++|+||||++.+| |+|||+||||+||+|+|| +|+|||+||++
T Consensus 22 ~~~~p~~~~G~IPGV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~~G---A~SIVlSGgYeDD~D~Gd-~liYTGsGG~d 97 (231)
T 3oln_A 22 CTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG---AYSLVLAGGFADEVDRGD-EFTYTGSGGKN 97 (231)
T ss_dssp --CCCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTE---EEEEEESSCSSTTCBCSS-EEEEECCCC--
T ss_pred EeecCCccCcCCCCCcCcCEEccHHHHhhhCCCCcccCCcccCCCCC---eEEEEecCCccccCCCCC-EEEEEcCCCcc
Confidence 46899999999999999999999999999999999999999999888 999999999999999999 99999999999
Q ss_pred CCCCC---CCccccccccccHHHHhhh---------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEEEE
Q 016310 271 KVSKD---AVPEDQKLIQGNLALKNSM---------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERY 332 (391)
Q Consensus 271 ~~~~~---kq~~DQkLerGNlAL~~S~---------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~ 332 (391)
..+++ .|++||+|++||+||++|| +.++|||||||+++.. .+.++|.++|||||||+|++|
T Consensus 98 ~~gnkrt~~q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k~~k-~s~yaP~~gyrYDGLY~V~~~ 176 (231)
T 3oln_A 98 LAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRK-ISKYAPEEGNRYDGIYKVVKY 176 (231)
T ss_dssp ---------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGGGTT-TCTTSCSSSEEEEEEEEEEEE
T ss_pred CcCcccccccccccccccchHHHHhhhhccccccccchhhhhccCCceEEEeccccCc-CCCccCCCCeEeCeEEEEEEE
Confidence 87654 4899999999999999985 4579999999999753 357899999999999999999
Q ss_pred EEeeCCC-CcEEEEEee-ecCCCCCCchhhHHH
Q 016310 333 WQARGPF-GNLVFKFLL-RSLGQKDYRLDEMRE 363 (391)
Q Consensus 333 W~ekGk~-G~~V~KFkL-RlpGQp~l~~~~~~~ 363 (391)
|.|+|++ ||.||||+| |+||||++.+.+-++
T Consensus 177 W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~~~ 209 (231)
T 3oln_A 177 WPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIE 209 (231)
T ss_dssp EEEECTTTCCEEEEEEEEECCSSCCTTSHHHHH
T ss_pred EeccCCcCCeEEEEEEEEECCCCCCCcchhhhh
Confidence 9999999 999999999 999999777666443
No 3
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=100.00 E-value=1.4e-60 Score=444.16 Aligned_cols=161 Identities=32% Similarity=0.528 Sum_probs=149.2
Q ss_pred CCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCC
Q 016310 195 TPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSK 274 (391)
Q Consensus 195 ~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~ 274 (391)
+.++||+||||+|||||++|+||+++|+|+++|+||||++..| |+|||+||||+||+|+|| +|+|||+||++..++
T Consensus 3 p~~~~G~iPGv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~~G---A~SIVlSGGY~DD~D~Gd-~l~YTGsGG~d~~gn 78 (212)
T 3fde_A 3 PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN-YFTYTGSGGRDLSGN 78 (212)
T ss_dssp CTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTE---EEEEEECSCSTTCEECSS-EEEEECSCCBCCTTT
T ss_pred CcccccCCCCCcCccEecCHHHHhHhccCCCCcCCcccCCCcc---eEEEEeCCCcccCCCCCC-EEEEeccCCccCcCc
Confidence 5789999999999999999999999999999999999998888 999999999999999999 999999999998776
Q ss_pred C---CCccccccccccHHHHhhh--------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeC
Q 016310 275 D---AVPEDQKLIQGNLALKNSM--------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARG 337 (391)
Q Consensus 275 ~---kq~~DQkLerGNlAL~~S~--------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekG 337 (391)
+ .|++||+|++||+||++|| ++++|||||||++... .+.++|.++|||||||+|++||.|+|
T Consensus 79 kr~~~q~~DQ~l~~gNlAL~~s~~~~~~~~~~~~~s~~~g~PVRVIRg~k~~k-~s~yaP~~gyrYDGLY~V~~~W~e~g 157 (212)
T 3fde_A 79 KRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGK-HSKYAPAEGNRYDGIYKVVKYWPERG 157 (212)
T ss_dssp CSCCCBCSCCCSCHHHHHHHHTSSSCCCTTCEECSSGGGSCCEEEEEESCSST-TCSSSCSSSEEEEEEEEEEEEEEEEC
T ss_pred cccCcccccccccccchHHHhhccccccccchhhhhhhcCCcEEEEcccCcCC-CCccCCCCCeEeCeEEEEEEEEEccC
Confidence 4 4899999999999999986 4799999999998753 35799999999999999999999999
Q ss_pred CCCcEEEEEee-ecCCCCCCchhh
Q 016310 338 PFGNLVFKFLL-RSLGQKDYRLDE 360 (391)
Q Consensus 338 k~G~~V~KFkL-RlpGQp~l~~~~ 360 (391)
++|+.||||+| |+||||+..+.+
T Consensus 158 ~~G~~V~kf~L~R~~gqp~~w~~~ 181 (212)
T 3fde_A 158 KSGFLVWRYLLRRDDTEPEPWTRE 181 (212)
T ss_dssp TTSSEEEEEEEEECCSSCCTTSHH
T ss_pred CCCcEEEEEEEEECCCCCCCcchh
Confidence 99999999999 999999755444
No 4
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=100.00 E-value=2.8e-60 Score=448.21 Aligned_cols=170 Identities=30% Similarity=0.490 Sum_probs=149.8
Q ss_pred cCcccCCCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCC
Q 016310 189 EKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGG 268 (391)
Q Consensus 189 ~~~~~n~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG 268 (391)
+-+.+++.++|||||||+|||||+||+||+++|||+++|+||||++..| |+|||+||||+||+|+|| +|+|||+||
T Consensus 4 ~~~~~~~~~~~G~iPGV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~~G---A~SIVlSGgYeDD~D~GD-~liYTGsGG 79 (239)
T 2pb7_A 4 KECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGN-FFTYTGSGG 79 (239)
T ss_dssp -CCCSSCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTE---EEEEEESSCSTTCCBCSS-EEEEECCCC
T ss_pred eEEEecCCCcccCCCCCcCCCEECCHHHHHHhCCccccccCcccCCCCC---EEEEEECCCccccccCCc-EEEEEccCC
Confidence 3467899999999999999999999999999999999999999998777 999999999999999999 999999999
Q ss_pred CCCCCCC---CCccccccccccHHHHhhh---------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEE
Q 016310 269 NPKVSKD---AVPEDQKLIQGNLALKNSM---------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVE 330 (391)
Q Consensus 269 ~d~~~~~---kq~~DQkLerGNlAL~~S~---------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv 330 (391)
++..+++ .|.+||+|++||+||++|| ++++|||||||+++.. .+.++|.++|||||||+|+
T Consensus 80 ~d~~gnkr~~~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k-~s~yaP~~GyrYDGLY~V~ 158 (239)
T 2pb7_A 80 RDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGK-NSKYAPAEGNRYDGIYKVV 158 (239)
T ss_dssp ----------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGG-TCTTSCSSSEEEEEEEEEE
T ss_pred ccCcccccccccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCc-CCcccCCceEEeCCeEEEE
Confidence 9987654 4899999999999999974 5899999999998743 3578999999999999999
Q ss_pred EEEEeeCCCCcEEEEEee-ecCCCCCCchhhHHH
Q 016310 331 RYWQARGPFGNLVFKFLL-RSLGQKDYRLDEMRE 363 (391)
Q Consensus 331 ~~W~ekGk~G~~V~KFkL-RlpGQp~l~~~~~~~ 363 (391)
+||.++|++|+.||||+| |+||||++.+.+.+.
T Consensus 159 ~~w~e~gk~G~~V~kf~L~R~~gQP~~w~~~~~~ 192 (239)
T 2pb7_A 159 KYWPEKGKSGFLVWRYLLRRDDDEPGPWTKEGKD 192 (239)
T ss_dssp EEEEEECTTSSEEEEEEEEECCSSCCTTSHHHHH
T ss_pred EEEEeecCCCcEEEEEEEEECCCCCCCccccccc
Confidence 999999999999999999 999999766655443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=33.89 E-value=62 Score=25.57 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred cceeeEEEEEEeeCCCCcEEEEEeeecCCC---------CCCchhhHHHH
Q 016310 324 DGLYFVERYWQARGPFGNLVFKFLLRSLGQ---------KDYRLDEMREE 364 (391)
Q Consensus 324 DGLY~Vv~~W~ekGk~G~~V~KFkLRlpGQ---------p~l~~~~~~~~ 364 (391)
+|||..+. ++|...|.|+.|..|. |.+.+.+-++.
T Consensus 24 ~GL~L~V~------psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~ 67 (88)
T 3jtz_A 24 HGLYLLVK------PGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQ 67 (88)
T ss_dssp TTEEEEEC------TTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHH
T ss_pred CceEEEEe------cCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHH
Confidence 68886653 5676666666655554 45555554443
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=18.17 E-value=1.3e+02 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred cceeeEEEEEEeeCCCCcEEEEEeeecCCC---------CCCchhhHHHH
Q 016310 324 DGLYFVERYWQARGPFGNLVFKFLLRSLGQ---------KDYRLDEMREE 364 (391)
Q Consensus 324 DGLY~Vv~~W~ekGk~G~~V~KFkLRlpGQ---------p~l~~~~~~~~ 364 (391)
+|||..+. ++|...|.|+.|..|. |.+.+.+-++.
T Consensus 24 ~GL~L~V~------psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~ 67 (108)
T 3ju0_A 24 FGMHLLVH------PNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQR 67 (108)
T ss_dssp TTEEEEEC------TTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHH
T ss_pred CceEEEEE------cCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHH
Confidence 68887663 5676666666555543 45555555443
No 7
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=17.37 E-value=6.6e+02 Score=25.81 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCCcCCeeeecc----CCceeEEEEEec-----CCcc----CCCCCCccEEEEEcCCCCCCCCCCCCccc-cccccccHH
Q 016310 224 QQFNNGIDYMEE----GGKLLATSIVES-----GRYT----NDGGYCDHLLIYSGHGGNPKVSKDAVPED-QKLIQGNLA 289 (391)
Q Consensus 224 ~~~qaGIdg~~~----~G~~~A~SIVlS-----GgYe----DD~D~GD~~LiYTG~GG~d~~~~~kq~~D-QkLerGNlA 289 (391)
-+..+||-.... ++...|.=.|.| |+.+ |-.|...|.|+|.|..- ....| ..-.+||.+
T Consensus 62 ~~l~~gi~~~~~~~~~~~~~~~~i~~~s~~~k~g~~~~pWpD~lD~~tG~f~YyGDNK-------~pg~~~~~~~~GN~~ 134 (456)
T 4f0q_A 62 VMLEAGINAPAEVVGPDRSRRALIAIRSSPWKAGHETNPWHDEFDLDHGHVRYFGDHK-------PSTVGLPGETKGNRL 134 (456)
T ss_dssp CCCCSEEECCCCEECSSCEECCCEEEEECCCGGGCCCCTTCCEEETTTTEEEEECCCC-------TTCCSSTTCSHHHHH
T ss_pred hhhhcCCCccccccCCCCCcceeEEEecCCccCCCCCCCCCccccccCCEEEEeCCCC-------CCCCCCCCCCchhHH
Confidence 345578877652 344443333444 5544 43444445899999721 11111 233579999
Q ss_pred HHhhhh---------c--CCceEEEeccccCccccCcCCceEEEEcceeeEEE---EEEeeCCCC--cEEEEEee-ecC
Q 016310 290 LKNSME---------A--KTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVER---YWQARGPFG--NLVFKFLL-RSL 351 (391)
Q Consensus 290 L~~S~~---------~--~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~---~W~ekGk~G--~~V~KFkL-Rlp 351 (391)
|...+. . =-||=|.+......+ .......+--.-|++.+.+ .|+...++| |.=|+|.| =+.
T Consensus 135 Ll~~f~~~~~~~~~~R~~iPPifiF~k~~~~r~-~r~v~~g~l~f~G~~~i~~~e~vv~~~~~nG~rFqNY~a~FTIL~ 212 (456)
T 4f0q_A 135 LLEAARLHAGTTREERLLAPPLFLFRAVTVHRA-GRAVVKGHVEFCGAAIIERLEHVVQRDPETGRSFPNLSLDLAVVS 212 (456)
T ss_dssp HHHHHHHHTCSSHHHHTTCCCEEEEEECCEEET-TEEECSSEEEEEEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEBC
T ss_pred HHHHHHHHhCCChhhhccCCCEEEEEecccccc-ccceeecceeccCcccccccceeeEEecCCCcEeeccEEEEEEec
Confidence 987653 1 128888877643210 0001112223445554442 233345555 45566666 443
No 8
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=15.78 E-value=2.3e+02 Score=23.52 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=38.3
Q ss_pred cCCceEEEeccccCccccCcCCceEEEE-----------cceeeEEEEEEe--------------eCCCCcEEEEEeeec
Q 016310 296 AKTPVRVIRGIKNLVASVMKKNNVVYVY-----------DGLYFVERYWQA--------------RGPFGNLVFKFLLRS 350 (391)
Q Consensus 296 ~~~PVRVIRG~k~~s~~~~~~p~kgYrY-----------DGLY~Vv~~W~e--------------kGk~G~~V~KFkLRl 350 (391)
.+.+|+|--|....- .-...|..||++ ||++.|.+.+.. .|..|..+|+|+-.-
T Consensus 11 n~~ti~l~~Ge~~~I-~L~~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~~~~~~vG~gG~~~~~fka~~ 89 (121)
T 2cio_B 11 NNKTIRMVIGETFTI-ELESNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKNHRRLLVGAGGTMVLEVKALK 89 (121)
T ss_pred CCcEEEEcCCCEEEE-EeCCCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCcccccccccEeCCCceEEEEEEEec
Confidence 455666666653211 112346677754 466777766652 456688999999877
Q ss_pred CCCCCCch
Q 016310 351 LGQKDYRL 358 (391)
Q Consensus 351 pGQp~l~~ 358 (391)
+|+-.|..
T Consensus 90 ~G~~~i~~ 97 (121)
T 2cio_B 90 AGKHTLSL 97 (121)
T ss_pred CceEEEEE
Confidence 88766543
No 9
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=13.94 E-value=21 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=18.8
Q ss_pred cCC--CCCCCCceechHhHHhhhhc
Q 016310 200 GSI--PGVEVGDKFQWRFEMTIIGL 222 (391)
Q Consensus 200 G~V--PGV~VGD~F~~R~El~~vGL 222 (391)
|.| |++.+|-.|.++.+...++|
T Consensus 28 G~I~Pp~~KvGr~wrv~~~a~~v~~ 52 (52)
T 2og0_A 28 SRIFPPPVKDGREYLFHESAVKVDL 52 (52)
T ss_dssp TCEESCCEEETTEEEEETTCEECC-
T ss_pred CCCCCcccccCCEEEEcccceeeCC
Confidence 666 89999999999988877664
No 10
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=12.20 E-value=3.1e+02 Score=23.15 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=28.9
Q ss_pred cCCceEEEEcc-eeeEEEEEE-eeCCCCcEEEEEee-e-cCCC
Q 016310 315 KKNNVVYVYDG-LYFVERYWQ-ARGPFGNLVFKFLL-R-SLGQ 353 (391)
Q Consensus 315 ~~p~kgYrYDG-LY~Vv~~W~-ekGk~G~~V~KFkL-R-lpGQ 353 (391)
..++....+|| +|+|+++-. -+|+.|....+.+| - ..|+
T Consensus 14 lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~ 56 (136)
T 1bkb_A 14 LKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGG 56 (136)
T ss_dssp CCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCC
T ss_pred ccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCC
Confidence 45677889999 999999844 44666688889888 3 3444
Done!