BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016311
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/391 (60%), Positives = 306/391 (78%), Gaps = 3/391 (0%)
Query: 1 MDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF 60
MDVRESIS Q V+++L KHV T +++SN++FSP+SI+V+LS+I+AGS G T DQ+LSF
Sbjct: 3 MDVRESISLQNQVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSF 62
Query: 61 LKSKSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKA 120
LK S DQLN+F+SE+V+ V ADGS +GGP+LSVANG WID+SLS K +FKQ++++ YKA
Sbjct: 63 LKFSSTDQLNSFSSEIVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKA 122
Query: 121 ASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNET 180
ASNQ DFQ+KA EV EVN WAEKETNGL+ EVLP GS D+ T+LIFANALYFKG WNE
Sbjct: 123 ASNQADFQSKAVEVIAEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTWNEK 182
Query: 181 FDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFL 240
FD S T++ +FHLL+G + PFMTSKK Q+VSA+DGFKVLGLPY QG+DKR+FSMYF+L
Sbjct: 183 FDESLTQEGEFHLLDGNKVTAPFMTSKKKQYVSAYDGFKVLGLPYLQGQDKRQFSMYFYL 242
Query: 241 PDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
PDA +GL LL+K+ S FLD+H+P ++V+V +F+IP+FK SFG + S P
Sbjct: 243 PDANNGLSDLLDKIVSTPGFLDNHIPRRQVKVREFKIPKFKFSFGFDASNVLKGLGLTSP 302
Query: 301 FSGEGGGLAEMVDSP-VGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL-SDK 358
FSGE GL EMV+SP +GKNL VS+IF K+ IEVNEEGTE + LR +++ D+
Sbjct: 303 FSGE-EGLTEMVESPEMGKNLCVSNIFHKACIEVNEEGTEAAAASAGVIKLRGLLMEEDE 361
Query: 359 IDFVADHPFVFMIREDMTGLVMFTGHVLNPL 389
IDFVADHPF+ ++ E++TG+V+F G V++PL
Sbjct: 362 IDFVADHPFLLVVTENITGVVLFIGQVVDPL 392
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 189/384 (49%), Gaps = 20/384 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 56 ATAFYQHLADSKNNNDNIFLSPLSISTAFAMTKLGACNNTLTQLMEVFKFDTISEKTSDQ 115
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S L AN ++ D+S++ T++ + + VY A +DF+
Sbjct: 116 IHFFFAKLNCRLYRKANKSS--ELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFK 173
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+PP +++ T L+ N +YFKG W F T+
Sbjct: 174 GNAEQSRLTINQWISNKTEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRK 233
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S V M + K ++ + +VL LP+K G+D +M LP + L
Sbjct: 234 ELFYKADGESCSVLMMYQESKFRYRRVAESTQVLELPFK-GDD---ITMVLILPKLEKTL 289
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ + ++LD + V +PRF+I V FS E
Sbjct: 290 AKVEQELTPDMLQEWLDELTETLLV----VHMPRFRIEDSFSVKEQLQDMGLEDLFSPEK 345
Query: 306 GGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADH 365
L +V + +LYVS F K+F+EVNEEG+E ++ RS+ SD++ F A+
Sbjct: 346 SRLPGIV-AEGRSDLYVSDAFHKAFLEVNEEGSEAAASTVISIAGRSLN-SDRVTFKANR 403
Query: 366 PFVFMIREDMTGLVMFTGHVLNPL 389
PF+ +IRE ++F G V NP
Sbjct: 404 PFLVLIREVALNTIIFMGRVANPC 427
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 177/372 (47%), Gaps = 23/372 (6%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
+D N+ FSP SI L+L +KG T ++ L + + +++ EL+ A P
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLT---AFNKP 121
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKET 146
L AN ++++++ +L T+ Q+ YKA +V+F+T + +E+N W EK+T
Sbjct: 122 RNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQT 181
Query: 147 NGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGS--IKVPFM 204
+K +L V +TRLI NA+YFK W F + KT F L S +K+ +M
Sbjct: 182 ESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYM 241
Query: 205 TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP-DAKDGLPTLLEKMGSE------ 257
+ FK++ LPY KR SM+ LP D KDG T LE++ E
Sbjct: 242 RDTFPVLIMEKMNFKMIELPYV----KRELSMFILLPDDIKDG-TTGLEQLERELTYERL 296
Query: 258 SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVG 317
S++ D + ++ + D +P+F + I++ F+ M D
Sbjct: 297 SEWADSKMMTE--TLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTT-NADFRGMTDK--- 350
Query: 318 KNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTG 377
K+L +S + +SF+ V+E+GTE + + V++ + F DHPF F IR + +
Sbjct: 351 KDLAISKVIHQSFVAVDEKGTEAAAATAVIISFTTSVINHVLKFKVDHPFHFFIRHNKSK 410
Query: 378 LVMFTGHVLNPL 389
++F G P+
Sbjct: 411 TILFFGRFCCPV 422
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 185/383 (48%), Gaps = 18/383 (4%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGG 307
+ +++ E L L + +PRF+I G + FS E
Sbjct: 293 AKVEKELTPE--VLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSK 350
Query: 308 LAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHP 366
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+ P
Sbjct: 351 LPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVTFKANRP 407
Query: 367 FVFMIREDMTGLVMFTGHVLNPL 389
F+ IRE ++F G V NP
Sbjct: 408 FLVFIREVPLNTIIFMGRVANPC 430
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 187/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 55 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 114
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 115 IHFFFAKLNCRLYRKANKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 172
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 173 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 232
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 233 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 288
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS E
Sbjct: 289 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEK 344
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+
Sbjct: 345 SKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVTFKAN 401
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 402 RPFLVFIREVPLNTIIFMGRVANPC 426
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAQKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS E
Sbjct: 293 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEK 348
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG E + RS+ +++ F A+
Sbjct: 349 SKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGCEAAASTAVVIAGRSLN-PNRVTFKAN 405
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 406 RPFLVFIREVPLNTIIFMGRVANPC 430
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 186/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAAKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS E
Sbjct: 293 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEK 348
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG E + RS+ +++ F A+
Sbjct: 349 SKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGAEAAASTAVVIAGRSLN-PNRVTFKAN 405
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 406 RPFLVFIREVPLNTIIFMGRVANPC 430
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKAQKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS E
Sbjct: 293 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEK 348
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG E + RS+ +++ F A+
Sbjct: 349 SKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGXEAAASTAVVIAGRSLN-PNRVTFKAN 405
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 406 RPFLVFIREVPLNTIIFMGRVANPC 430
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 185/383 (48%), Gaps = 18/383 (4%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGG 307
+ +++ E L L + +PRF+I G + FS E
Sbjct: 293 AKVEKELTPE--VLQEWLDELEEMMLCVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSK 350
Query: 308 LAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHP 366
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+ P
Sbjct: 351 LPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVCFKANRP 407
Query: 367 FVFMIREDMTGLVMFTGHVLNPL 389
F+ IRE ++F G V NP
Sbjct: 408 FLVFIREVPLNTIIFMGRVANPC 430
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 187/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS E
Sbjct: 293 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPEK 348
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+
Sbjct: 349 SKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVTFKAN 405
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 406 RPFLVFIREVPLNTIIFMGRVANPC 430
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 186/385 (48%), Gaps = 22/385 (5%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 70 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 129
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 130 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 187
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 188 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 247
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 248 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 303
Query: 248 PTLLEKMGSE--SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
+ +++ E ++LD V +PRF+I G + FS
Sbjct: 304 AKVEKELTPEVLQEWLDELEEMMLV----VHMPRFRIEDGFSLKEQLQDMGLVDLFSPAA 359
Query: 306 GGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVAD 364
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+
Sbjct: 360 SALPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVTFKAN 416
Query: 365 HPFVFMIREDMTGLVMFTGHVLNPL 389
PF+ IRE ++F G V NP
Sbjct: 417 RPFLVFIREVPLNTIIFMGRVANPC 441
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 184/383 (48%), Gaps = 18/383 (4%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 55 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 114
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + S +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 115 IHFFFAKLNCRLYRKAAKSS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 172
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N + FKG W F T+
Sbjct: 173 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTILFKGLWKSKFSPENTRK 232
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 233 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 288
Query: 248 PTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGG 307
+ +++ E L L + +PRF+I G + FS E
Sbjct: 289 AKVEKELTPE--VLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSK 346
Query: 308 LAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHP 366
L +V G+ +LYVS F K+F+EVNEEG+E + RS+ +++ F A+ P
Sbjct: 347 LPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNRVTFKANRP 403
Query: 367 FVFMIREDMTGLVMFTGHVLNPL 389
F+ IRE ++F G V NP
Sbjct: 404 FLVFIREVPLNTIIFMGRVANPC 426
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 186/391 (47%), Gaps = 26/391 (6%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVD--------NSTRLIFANALYFKGAWNET 180
A + +N W +T G + +V+P +++ ST L+ N +YFKG W
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINVLVLVNTRTSTVLVLVNTIYFKGLWKSK 236
Query: 181 FDSSKTKDYDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFF 239
F T+ F+ +G S M + K ++ +G +VL LP+K G+D +M
Sbjct: 237 FSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLI 292
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP + L + +++ E L L + +PRF+I G +
Sbjct: 293 LPKPEKSLAKVEKELTPE--VLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVD 350
Query: 300 PFSGEGGGLAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDK 358
FS E L +V G+ +LYVS F K+F+EVNEEG+E + RS+ ++
Sbjct: 351 LFSPEKSKLPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLN-PNR 407
Query: 359 IDFVADHPFVFMIREDMTGLVMFTGHVLNPL 389
+ F A+ PF+ IRE ++F G V NP
Sbjct: 408 VTFKANRPFLVFIREVPLNTIIFMGRVANPC 438
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 184/383 (48%), Gaps = 18/383 (4%)
Query: 14 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-----SKSNDQ 68
A + +H+A ++ + N+ SP SI ++ G+ TL QL+ K K++DQ
Sbjct: 59 ATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQ 118
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
++ F ++L ++ + + +L AN ++ D+SL+ T++ + + VY A +DF+
Sbjct: 119 IHFFFAKLNCRLYRKANKAS--KLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFK 176
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A + +N W +T G + +V+P +++ T L+ N +YFKG W F T+
Sbjct: 177 ENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRK 236
Query: 189 YDFHLLNGGSIKVPFMTSK-KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F+ +G S M + K ++ +G +VL LP+K G+D +M LP + L
Sbjct: 237 ELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFK-GDD---ITMVLILPKPEKSL 292
Query: 248 PTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGG 307
+ +++ E L L + +PRF+I G + FS E
Sbjct: 293 AKVEKELTPE--VLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSK 350
Query: 308 LAEMVDSPVGK-NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHP 366
L +V G+ +LYVS F K+F+EVNEEG+ + RS+ +++ F A+ P
Sbjct: 351 LPGIVAE--GRDDLYVSDAFHKAFLEVNEEGSAAAASTAVVIAGRSLN-PNRVTFKANRP 407
Query: 367 FVFMIREDMTGLVMFTGHVLNPL 389
F+ IRE ++F G V NP
Sbjct: 408 FLVFIREVPLNTIIFMGRVANPC 430
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 186/390 (47%), Gaps = 33/390 (8%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL--KSKSNDQL 69
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + S N +
Sbjct: 25 DLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 70 NAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQT 129
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 84 FSFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQ 140
Query: 130 KAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDY 189
A V+ +N W E TN LVK+++ P D +T L NA+YFKG W F T+ +
Sbjct: 141 NVA-VANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTF 199
Query: 190 DFHLLNGGSIKVPFMTSKKNQFVSAF-DG-------FKVLGLPYKQGEDKRRFSMYFFLP 241
F + +++P M + + F DG ++VL +PY+ E SM L
Sbjct: 200 SFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDE----ISMMLVLS 255
Query: 242 DAKDGLPTLLEKMGSE-SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
+ L TL + ++ + + + Q+VEV +PRF + I++
Sbjct: 256 RQEVPLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITEI 312
Query: 301 FSGEGG--GLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDK 358
F + GL++ K +++S KSF+EVNEEG+E + R VL +
Sbjct: 313 FIKDANLTGLSD------NKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYPQ 366
Query: 359 IDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + DHPF F+IR TG ++F G V++P
Sbjct: 367 V--IVDHPFFFLIRNRRTGTILFMGRVMHP 394
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 179/397 (45%), Gaps = 45/397 (11%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKS-------------------- 63
+D N+ FSP SI L+L +KG T + ++L F ++
Sbjct: 29 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRRR 88
Query: 64 --KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAA 121
++Q S ++ A P L AN ++++++ +L T+ Q+ YKA
Sbjct: 89 MDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAE 148
Query: 122 SNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETF 181
+V+F+T + +E+N W EK+T +K +L V +TRLI NA+YFK W F
Sbjct: 149 PQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKF 208
Query: 182 DSSKTKDYDFHLLNGGS--IKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFF 239
+ KT F L S +K+ +M + FK++ LPY KR SM+
Sbjct: 209 QAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPYV----KRELSMFIL 264
Query: 240 LP-DAKDGLPTLLEKMGSE------SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXX 292
LP D KDG T LE++ E S++ D + ++ + D +P+F + I++
Sbjct: 265 LPDDIKDG-TTGLEQLERELTYERLSEWADSKMMTE--TLVDLHLPKFSLEDRIDLRDTL 321
Query: 293 XXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
F+ M D K+L +S + +SF+ V+E+GTE + +
Sbjct: 322 RNMGMTTAFTT-NADFRGMTDK---KDLAISKVIHQSFVAVDEKGTEAAAATAVIISFTT 377
Query: 353 IVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNPL 389
V++ + F DHPF F IR + + ++F G P+
Sbjct: 378 SVINHVLKFKVDHPFHFFIRHNKSKTILFFGRFCCPV 414
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 186/390 (47%), Gaps = 33/390 (8%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL--KSKSNDQL 69
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + S N +
Sbjct: 25 DLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEE 83
Query: 70 NAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQT 129
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 84 FSFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQ 140
Query: 130 KAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDY 189
A V+ +N W E TN LVK+++ P D +T L NA+YFKG W F T+ +
Sbjct: 141 NVA-VANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTF 199
Query: 190 DFHLLNGGSIKVPFMTSKKNQFVSAF-DG-------FKVLGLPYKQGEDKRRFSMYFFLP 241
F + +++P M + + F DG ++VL +PY+ E SM L
Sbjct: 200 SFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDE----ISMMLVLS 255
Query: 242 DAKDGLPTLLEKMGSE-SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
+ L TL + ++ + + + Q+VEV +PRF + I++
Sbjct: 256 RQEVPLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITEI 312
Query: 301 FSGEGG--GLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDK 358
F + GL++ K +++S KSF+EVNEEG+E + R VL +
Sbjct: 313 FIKDANLTGLSD------NKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYPQ 366
Query: 359 IDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + DHPF F+IR TG ++F G V++P
Sbjct: 367 V--IVDHPFFFLIRNRRTGTILFMGRVMHP 394
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 177/388 (45%), Gaps = 24/388 (6%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSNDQL 69
T AL+L KH+A + NL SP SI ++++ GS+G T DQ+ L+ ++
Sbjct: 9 TLFALNLFKHLA-KASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAA 67
Query: 70 NAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQT 129
+ S ++ A + +G L N ++ ++S S + + ++ Y + VDF
Sbjct: 68 DKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLE 127
Query: 130 KAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDY 189
A E +++N W + +T G + +LP GSVD TR++ NA+YFKG W F+ Y
Sbjct: 128 CAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLY 187
Query: 190 DFHLLNGGSIKVPFMTSKKNQFVSAFDGFK--VLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F + + V M ++ + + K +L LPY SM+ LPD +
Sbjct: 188 PFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGD-----VSMFLLLPDEIADV 242
Query: 248 PTLLEKMGSESKF-------LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
T LE + SE + + VEV IP+FK+ E+
Sbjct: 243 STGLELLESEITYDKLNKWTSKDKMAEDEVEV---YIPQFKLEEHYELRSILRSMGMEDA 299
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKID 360
F+ + M + +L++S +F ++ ++VNEEGTE + R+
Sbjct: 300 FNKGRANFSGMSER---NDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRTG--HGGPQ 354
Query: 361 FVADHPFVFMIREDMTGLVMFTGHVLNP 388
FVADHPF+F+I +T ++F G +P
Sbjct: 355 FVADHPFLFLIMHKITNCILFFGRFSSP 382
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 178/388 (45%), Gaps = 24/388 (6%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK-SKSNDQL 69
T AL+L KH+A + NL SP SI ++++ GS+G T DQ+ S L+ ++
Sbjct: 9 TLFALNLFKHLA-KASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQFNEVGAAA 67
Query: 70 NAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQT 129
+ S ++ A + +G L N ++ ++S S + + ++ Y + VDF
Sbjct: 68 DKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLE 127
Query: 130 KAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDY 189
A E +++N W + +T G + +LP GSVD TR++ NA+YFKG W F+ +
Sbjct: 128 CAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLF 187
Query: 190 DFHLLNGGSIKVPFMTSKKNQFVSAFDGFK--VLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
F + + V M ++ + + K +L LPY SM+ LPD +
Sbjct: 188 PFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGD-----VSMFLLLPDEIADV 242
Query: 248 PTLLEKMGSESKF-------LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
T LE + SE + + VEV IP+FK+ E+
Sbjct: 243 STGLELLESEITYDKLNKWTSKDKMAEDEVEV---YIPQFKLEEHYELRSILRSMGMEDA 299
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKID 360
F+ + M + +L++S +F ++ ++VNEEGTE + R+
Sbjct: 300 FNKGRANFSGMSER---NDLFLSEVFHQAMVDVNEEGTEAAAGTGGVMTGRTG--HGGPQ 354
Query: 361 FVADHPFVFMIREDMTGLVMFTGHVLNP 388
FVADHPF+F+I +T ++F G +P
Sbjct: 355 FVADHPFLFLIMHKITNCILFFGRFSSP 382
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 183/384 (47%), Gaps = 46/384 (11%)
Query: 16 SLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFL--KSKSNDQLN 70
S+ K V TE +N + SP S LL+L +G +G T + Q+L F+ + K+ +
Sbjct: 21 SVYKEVLKTE--KANFLVSPFSAATLLALAQSGCRGDTAEEIRQVLHFVGDREKAEGAVK 78
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
S+L + L AN +++ + S++ F+++ VY A S VDF K
Sbjct: 79 EVLSKLTNEEYT---------LHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEK 129
Query: 131 AAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYD 190
+ ++ +N W E++T ++ ++ P ++N TR++ NALYF W F T+ D
Sbjct: 130 N-DAAKLMNAWVEEQTQHKIQNLVDPEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSD 188
Query: 191 FHLLNGGSIKVPFMTSKKNQF----VSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDG 246
FH ++V M + F D K+L LP+K G S+ L + +G
Sbjct: 189 FHKSAKEVVQVDTMYLDEQYFNYYECHHLDA-KLLELPFKGGA-----SLTIVLSNQIEG 242
Query: 247 LPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG- 305
L +L K+ + FL H+L Q V V +P+FKI ++ F E
Sbjct: 243 LVSLESKI--KRSFLPHNLTKQLVNVA---LPKFKIESTVDFKKVLKKLGVKKAFGDEAD 297
Query: 306 -GGLAEMVDSPVGK--NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDK-IDF 361
G+A G+ +L +S+I QKSFI+V+EEG E V+L + L D F
Sbjct: 298 LSGIA-------GEKGDLVISNIVQKSFIDVSEEGVEAAAATYIPVILPEMALPDSPKQF 350
Query: 362 VADHPFVFMIREDMTGLVMFTGHV 385
+ DHPF+F I+ + G+++F G V
Sbjct: 351 IVDHPFIFYIK--VKGMILFAGRV 372
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 177/377 (46%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSF---------LKSKSNDQLNAFASE 75
+ N+++SP SI +LS++ G++ T +++++ F L+S+ ++ AS
Sbjct: 25 NENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHAS- 83
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ PS LS+A+ ++ +E+ + + Q + +YK + V FQT A +
Sbjct: 84 LKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQAR 143
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG++K L PGSVD T ++ +A+YFKG W + F T++ F +
Sbjct: 144 ELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITE 203
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M + V+ A + K+L LPY GE SM+ LPD GL L
Sbjct: 204 QESKPVQMMYQAGSFKVATVAAEKMKILELPYASGE----LSMFVLLPDDISGLEQLETT 259
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ P KI ++ FS A +
Sbjct: 260 ISIEK--LSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPS----ANL 313
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
+ L +S +++E+ E G+E V++ + +S+ +F DHPF+F+I
Sbjct: 314 SGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTG--VLVEAASVSE--EFRVDHPFLFLI 369
Query: 372 REDMTGLVMFTGHVLNP 388
+ + + ++F G + P
Sbjct: 370 KHNPSNSILFFGRCIFP 386
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 23/322 (7%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
+D N+ FSP SI L+L +KG T ++ L + + +++ EL+ A P
Sbjct: 65 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLT---AFNKP 121
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKET 146
L AN ++++++ +L T+ Q+ YKA +V+F+T + +E+N W EK+T
Sbjct: 122 RNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQT 181
Query: 147 NGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGS--IKVPFM 204
+K +L V +TRLI NA+YFK W F + KT F L S +K+ +M
Sbjct: 182 ESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYM 241
Query: 205 TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP-DAKDGLPTLLEKMGSE------ 257
+ FK++ LPY KR SM+ LP D KDG T LE++ E
Sbjct: 242 RDTFPVLIMEKMNFKMIELPYV----KRELSMFILLPDDIKDG-TTGLEQLERELTYERL 296
Query: 258 SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVG 317
S++ D + ++ + D +P+F + I++ F+ M D
Sbjct: 297 SEWADSKMMTE--TLVDLHLPKFSLEDRIDLRDTLRNMGMTTAFTT-NADFRGMTDK--- 350
Query: 318 KNLYVSSIFQKSFIEVNEEGTE 339
K+L +S + +SF+ V+E+GTE
Sbjct: 351 KDLAISKVIHQSFVAVDEKGTE 372
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 182/411 (44%), Gaps = 55/411 (13%)
Query: 1 MDVRESIS--NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLL 58
+ +RES + TD + + + V + +KD N+VFSP + +L+++ + G T Q+
Sbjct: 1 LPLRESHTAHQATDFGVKVFQQV-VQASKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQ 59
Query: 59 SFLKSKSNDQ-----LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQV 113
+ K N++ L + EL+ P +S A+ +++ L L F
Sbjct: 60 DAMGFKVNEKGTAHALRQLSKELMG-------PWNKNEISTADAIFVQRDLELVQGFMPH 112
Query: 114 VDNVYKAASNQVDFQTKAAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANA 170
+++ QVDF +EV R +N W E+ T G++ ++L G+VD TRL+ NA
Sbjct: 113 FFKLFQTMVKQVDF----SEVERARFIINDWVERHTKGMINDLLAKGAVDELTRLVLVNA 168
Query: 171 LYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLP 224
LYF G W F + T FH +G ++ VP M ++ N+F + DG + V+ LP
Sbjct: 169 LYFSGQWKTPFLEASTHQRLFHKSDGSTVSVPMM-AQSNKFNYTEFTTPDGLEYDVVELP 227
Query: 225 YKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDF-RIPRF--- 280
Y QG+ SM+ P KD + + + LD L Q G+ R+PR
Sbjct: 228 Y-QGDT---LSMFIAAPFEKDV------HLSALTNILDAELIRQW--KGNMTRLPRLLIL 275
Query: 281 -KISFGIEVSXXXXXXXXXXP--FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEG 337
K S EV P FS + D + L V+ QK IEVNE G
Sbjct: 276 PKFSLETEVDLRGPLEKLGMPDMFSATLADFTSLSDQ---EQLSVAQALQKVRIEVNESG 332
Query: 338 TEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
T + R + V D F+F++R + T ++F G V+ P
Sbjct: 333 TVASSSTAFVISARMA----PTEMVIDRSFLFVVRHNPTETILFMGQVMEP 379
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 181/369 (49%), Gaps = 32/369 (8%)
Query: 29 SNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSPS- 87
N+V S S+ L ++ S G + D+LL L + ND + VFAD +
Sbjct: 33 QNVVLSAFSVLPPLGQLALASVGESHDELLRAL-ALPNDNVTKD-------VFADLNRGV 84
Query: 88 ---GGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEK 144
G L +A+ +++ + L L + F V +V+ + VDF K+ E + +N W E
Sbjct: 85 RAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDF-VKSVEAAGAINKWVED 143
Query: 145 ETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 204
+TN +K ++ P ++D +TR + NA+YFKG+W + F +T D DFH+ +IKVP M
Sbjct: 144 QTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTM 203
Query: 205 TSKKN---QFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKF- 260
KK+ V D K++ + Y +G+ + SM LP+ DG+ L +K+
Sbjct: 204 IGKKDVRYADVPELDA-KMIEMSY-EGD---QASMIIILPNQVDGITALEQKLKDPKALS 258
Query: 261 -LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKN 319
+ L + VE+ +P+FKI ++ F+ L ++ + ++
Sbjct: 259 RAEERLYNTEVEIT---LPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKT--KES 313
Query: 320 LYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLV 379
L V + QK+FIEVNEEG E +V +S++L ++ D PF F ++ D G+
Sbjct: 314 LTVDAAIQKAFIEVNEEGAEAAAANAFGIVPKSLILYPEVHI--DRPFYFELKID--GIP 369
Query: 380 MFTGHVLNP 388
MF G V+ P
Sbjct: 370 MFNGKVIEP 378
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT---VASSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 36 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 92
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 93 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 149
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 150 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 208
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 209 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 263
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 264 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 316
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 317 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT---VASSSTAVIVSARM 370
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 371 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 402
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT---VESSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 17 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 73
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 74 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 130
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 131 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 189
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 190 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 244
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 245 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 297
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 298 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT---VASSSTAVIVSARM 351
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 352 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 383
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 26 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 82
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 83 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 139
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 140 -SEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 198
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 199 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 253
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 254 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 306
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 307 GMTDMFRQFQADFTSLSDQ---EPLHVALALQKVKIEVNESGT---VASSSTAVIVSARM 360
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 361 APE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 392
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 180/390 (46%), Gaps = 25/390 (6%)
Query: 8 SNQTDVALSLTKHVALTEAKDS-NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSN 66
S T AL L +AL+E + N+ SP SI ++++ G++G T QL +
Sbjct: 16 SANTRFALDL--FLALSENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTV 73
Query: 67 DQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+++++ L A + G+ L +AN ++ +++ + F Y A VD
Sbjct: 74 EEVHSRFQSLNADINKRGASY---ILKLANRLYGEKTYNFLPEFLVSTQKTYGADLASVD 130
Query: 127 FQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKT 186
FQ + + + +N W + +T G + E+L G VDN T+L+ NA+YFKG W + F T
Sbjct: 131 FQHASEDARKTINQWVKGQTEGKIPELLASGMVDNMTKLVLVNAIYFKGNWKDKFMKEAT 190
Query: 187 KDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFK--VLGLPYKQGEDKRRFSMYFFLPDAK 244
+ F L V M KK + K VL LPY QGE+ SM LPD
Sbjct: 191 TNAPFRLNKKDRKTVKMMYQKKKFAYGYIEDLKCRVLELPY-QGEE---LSMVILLPDDI 246
Query: 245 DGLPTLLEKMGSESKFLDHHLPSQRVEVGDF-----RIPRFKISFGIEVSXXXXXXXXXX 299
+ T L+K+ E L+ + E DF +PRFK+ ++
Sbjct: 247 EDESTGLKKI-EEQLTLEKLHEWTKPENLDFIEVNVSLPRFKLEESYTLNSDLARLGVQD 305
Query: 300 PFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSD-K 358
F+ L+ M + +++++S I KSF+EVN E T + + + D +
Sbjct: 306 LFNSSKADLSGMSGA---RDIFISKIVHKSFVEVN---EEGTEAAAATAGIATFCMDDPE 359
Query: 359 IDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+F ADHPF+F IR + +G ++F G +P
Sbjct: 360 ENFTADHPFLFFIRHNSSGSILFLGRFSSP 389
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 9 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 65
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 66 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 122
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 123 -SEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 181
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 182 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 236
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 237 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 289
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 290 GMTDMFRQFQADFTSLSDQ---EPLHVALALQKVKIEVNESGT---VASSSTAVIVSARM 343
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 344 APE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 375
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVALALQKVKIEVNESGT---VASSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXX-- 293
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 294 -XXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
PF + L++ + L+V+ QK IEVNE GT T V+ S
Sbjct: 294 GMTDMFRPFQADFTSLSDQ------EPLHVALALQKVKIEVNESGT---VASSSTAVIVS 344
Query: 353 IVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
++ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 345 ARMAPE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 11 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 67
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 68 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 124
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 125 -SEVERARFIINDWVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 183
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 184 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 238
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXX-- 293
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 239 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 291
Query: 294 -XXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
PF + L++ + L+V+ QK IEVNE GT T V+ S
Sbjct: 292 GMTDMFRPFQADFTSLSDQ------EPLHVALALQKVKIEVNESGT---VASSSTAVIVS 342
Query: 353 IVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
++ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 343 ARMAPE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 377
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 179/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGCWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE T T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESCT---VASSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 157/347 (45%), Gaps = 45/347 (12%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKS-------------------- 63
+D N+ FSP SI L+L +KG T + ++L F ++
Sbjct: 49 RDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRRR 108
Query: 64 --KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAA 121
++Q S ++ A P L AN ++++++ +L T+ Q+ YKA
Sbjct: 109 MDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAE 168
Query: 122 SNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETF 181
+V+F+T + +E+N W EK+T +K +L V +TRLI NA+YFK W F
Sbjct: 169 PQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKF 228
Query: 182 DSSKTKDYDFHLLNGGS--IKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFF 239
+ KT F L S +K+ +M + FK++ LPY KR SM+
Sbjct: 229 QAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKMNFKMIELPYV----KRELSMFIL 284
Query: 240 LP-DAKDGLPTLLEKMGSE------SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXX 292
LP D KDG T LE++ E S++ D + ++ + D +P+F + I++
Sbjct: 285 LPDDIKDG-TTGLEQLERELTYERLSEWADSKMMTE--TLVDLHLPKFSLEDRIDLRDTL 341
Query: 293 XXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
F+ M D K+L +S + +SF+ V+E+GTE
Sbjct: 342 RNMGMTTAFTT-NADFRGMTDK---KDLAISKVIHQSFVAVDEKGTE 384
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 175/383 (45%), Gaps = 32/383 (8%)
Query: 25 EAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADG 84
++K++N+ +SP SI L ++ G+K T Q+ L DQ+ + A D
Sbjct: 32 KSKENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHF---DQVTENTTGKAATYHVDR 88
Query: 85 S----------------PSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
S + L +AN ++ +++ + + Y+ + VDF
Sbjct: 89 SGNVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFA 148
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
E +++N W E +TN +K ++P G++ ++T L+ NA+YFKG W + F+ TK+
Sbjct: 149 NAPEESRKKINSWVESQTNEKIKNLIPEGNIGSNTTLVLVNAIYFKGQWEKKFNKEDTKE 208
Query: 189 YDFHLLNGGSIKVPFMTSKKN--QFVSAFD-GFKVLGLPYKQGEDKRRFSMYFFLPDAKD 245
F N + K M + F S D KVL +PYK G+D SM LP+ D
Sbjct: 209 EKF-WPNKNTYKSIQMMRQYTSFHFASLEDVQAKVLEIPYK-GKD---LSMIVLLPNEID 263
Query: 246 GLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEG 305
GL L EK+ +E L + R D +PRFK+ ++ F+G+
Sbjct: 264 GLQKLEEKLTAEKLMEWTSLQNMRETRVDLHLPRFKVEESYDLKDTLRTMGMVDIFNGD- 322
Query: 306 GGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADH 365
L+ M S + L +S + K+F+EV EEG E S +++ +F +H
Sbjct: 323 ADLSGMTGS---RGLVLSGVLHKAFVEVTEEGAEAAAATAVVGFGSSPTSTNE-EFHCNH 378
Query: 366 PFVFMIREDMTGLVMFTGHVLNP 388
PF+F IR++ T ++F G +P
Sbjct: 379 PFLFFIRQNKTNSILFYGRFSSP 401
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 179/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+V TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVALALQKVKIEVNESGT---VASSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIIDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 164/377 (43%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSNDQLNAFASE 75
+ N+ + P +I L+++ G+K T D+L F ++++ +N +S
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSS- 82
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ P+ S+A+ ++ +E + + Q V +Y+ ++FQT A +
Sbjct: 83 LRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAR 142
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG+++ VL P SVD+ T ++ NA+ FKG W +TF T+ F +
Sbjct: 143 ELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKTFKDEDTQAMPFRVTE 202
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M V+ A + K+L LP+ G SM LPD GL L
Sbjct: 203 QESKPVQMMYQIGLFRVASMASEKMKILELPFASG----TMSMLVLLPDEVSGLEQLESI 258
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ PR K+ ++ FS A +
Sbjct: 259 INFEK--LTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSS----ANL 312
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
++L +S + E+NE GTE V S+ +F ADHPF+F I
Sbjct: 313 SGISSAESLKISQAVHAAHAEINEAGTEVVGSAEAGVDAASV----SEEFRADHPFLFCI 368
Query: 372 REDMTGLVMFTGHVLNP 388
+ T V+F G ++P
Sbjct: 369 KHIATNAVLFFGRCVSP 385
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 180/393 (45%), Gaps = 41/393 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G + F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQFKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVL 355
F + D + L+V+ QK IEVNE GT T V+ S +
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT---VASSSTAVIVSARM 347
Query: 356 SDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + + + D PF+F++R + TG V+F G V+ P
Sbjct: 348 APE-EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 177/369 (47%), Gaps = 32/369 (8%)
Query: 29 SNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSPS- 87
N+V S S+ L ++ S G + D+LL L + ND + VFAD +
Sbjct: 33 QNVVLSAFSVLPPLGQLALASVGESHDELLRAL-ALPNDNV-------TKDVFADLNRGV 84
Query: 88 ---GGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEK 144
G L +A+ +++ + L L + F V +V+ + VDF K+ E + +N W E
Sbjct: 85 RAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDF-VKSVEAAGAINKWVED 143
Query: 145 ETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 204
+TN +K ++ P ++D +TR + NA+YFKG+W + F+ +T D DFH+ +IKVP M
Sbjct: 144 QTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFNKERTMDRDFHVSKDKTIKVPTM 203
Query: 205 TSKKN---QFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKF- 260
KK+ V D K++ + Y +G+ + SM LP+ DG+ L +K+
Sbjct: 204 IGKKDVRYADVPELDA-KMIEMSY-EGD---QASMIIILPNQVDGITALEQKLKDPKALS 258
Query: 261 -LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKN 319
+ L + VE+ +P+FKI ++ F+ L ++ + ++
Sbjct: 259 RAEERLYNTEVEI---YLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKT--KES 313
Query: 320 LYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLV 379
LYV + QK+FIEVNEEG E + S K++ + PF F ++ +
Sbjct: 314 LYVDAAIQKAFIEVNEEGAEAAAANAFKITTYSFHFVPKVEI--NKPFFFSLKYNRNS-- 369
Query: 380 MFTGHVLNP 388
MF+G + P
Sbjct: 370 MFSGVCVQP 378
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 174/374 (46%), Gaps = 27/374 (7%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSK-------GPTLDQLLSFLKSKSNDQLNAFASELVAVV 80
+SN+V SP S+ +LL+LI S T +L S +++ + D ++ +L+
Sbjct: 38 NSNVVLSPFSVKILLTLIYEASDTSFGNAVSNTKRELSSVIQNDNIDHTRSYYKQLLESA 97
Query: 81 FADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNM 140
D L++A ++D+ + + N ++Q+ + Y A +V + + + + +N
Sbjct: 98 QQDNKDYD---LNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSY-SNPTQTAATINN 153
Query: 141 WAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIK 200
W + TNG ++E++ P S++ + + N +YFKG W F F+ G
Sbjct: 154 WVSEHTNGRLREIVTPDSLEGAV-ITLVNVIYFKGLWTYPFPEVANNVKPFYGTRGKPTN 212
Query: 201 VPFMTSKKNQFV---SAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSE 257
+M + QF SA G ++L LPY+ + +MYF LP+ + + +L+++ S
Sbjct: 213 AQYM-EQNGQFYYDNSADLGAQILRLPYR----GNKLAMYFILPNPDNTVNQVLDRINSA 267
Query: 258 SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVG 317
S L L + +P+FK F +++ FS + L +
Sbjct: 268 S--LHQALWYMEENEVNVTLPKFKFDFSEQLNEPLQQVGIREIFS-QNASLPLLARGRGA 324
Query: 318 KN-LYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKID-FVADHPFVFMIREDM 375
++ + VS IFQK+ I +NE G+E +V + D + F A+ PF+F I ++
Sbjct: 325 RDEVRVSRIFQKAGITINELGSEAYAATEIQLVNK--FGGDGVQIFNANRPFIFFIEDET 382
Query: 376 TGLVMFTGHVLNPL 389
G ++F G + NP+
Sbjct: 383 LGTMLFAGKIENPV 396
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 162/377 (42%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSNDQLNAFASE 75
+ N+ + P +I L+++ G+K T D+L F ++++ +N +S
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSS- 83
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ P+ S+A+ ++ +E + + Q V +Y+ ++FQT A +
Sbjct: 84 LRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAR 143
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG+++ VL P SVD+ T ++ NA+ FKG W + F T+ F +
Sbjct: 144 ELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTE 203
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M V+ A + K+L LP+ G SM LPD GL L
Sbjct: 204 QESKPVQMMYQIGLFRVASMASEKMKILELPFASG----TMSMLVLLPDEVSGLEQLESI 259
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ PR K+ ++ FS A +
Sbjct: 260 INFEK--LTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSS----ANL 313
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
++L +S + E+NE G E V S+ +F ADHPF+F I
Sbjct: 314 SGISSAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASV----SEEFRADHPFLFCI 369
Query: 372 REDMTGLVMFTGHVLNP 388
+ T V+F G ++P
Sbjct: 370 KHIATNAVLFFGRCVSP 386
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSNDQLNAFASE 75
+ N+ + P +I L+++ G+K T D+L F ++++ +N +S
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDXIEAQCGTSVNVHSS- 83
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ P+ S+A+ ++ +E + + Q V +Y+ ++FQT A +
Sbjct: 84 LRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAR 143
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG+++ VL P SVD+ T ++ NA+ FKG W + F T+ F +
Sbjct: 144 ELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTE 203
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M V+ A + K+L LP+ G SM LPD GL L
Sbjct: 204 QESKPVQMMYQIGLFRVASMASEKMKILELPFASG----TMSMLVLLPDEVSGLEQLESI 259
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ PR K+ ++ FS A +
Sbjct: 260 INFEK--LTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSS----ANL 313
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
++L +S + E+NE G E V S+ +F ADHPF+F I
Sbjct: 314 SGISSAESLKISQAVHAAHAEINEAGREVVGXAEAGVDAASV----SEEFRADHPFLFCI 369
Query: 372 REDMTGLVMFTGHVLNP 388
+ T V+F G ++P
Sbjct: 370 KHIATNAVLFFGRCVSP 386
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSNDQLNAFASE 75
+ N+ + P +I L+++ G+K T D+L F ++++ +N +S
Sbjct: 25 NENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSS- 83
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ P+ S+A+ ++ +E + + Q V +Y+ ++FQT A +
Sbjct: 84 LRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAR 143
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG+++ VL P SVD+ T ++ NA+ FKG W + F T+ F +
Sbjct: 144 ELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTE 203
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M V+ A + K+L LP+ G SM LPD GL L
Sbjct: 204 QESKPVQMMYQIGLFRVASMASEKMKILELPFASG----TMSMLVLLPDEVSGLEQLESI 259
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ PR K+ ++ FS A +
Sbjct: 260 INFEK--LTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSS----ANL 313
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
++L +S + E+NE G E V S+ +F ADHPF+F I
Sbjct: 314 SGISSAESLKISQAVHAAHAEINEAGREVVGXAEAGVDAASV----SEEFRADHPFLFCI 369
Query: 372 REDMTGLVMFTGHVLNP 388
+ T V+F G ++P
Sbjct: 370 KHIATNAVLFFGRCVSP 386
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 38/373 (10%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSPSGG 89
N+V SP I +L ++ G+ G T QL ++ +N L + A S
Sbjct: 31 NIVISPHGIASVLGMLQLGADGRTKKQLAMVMRYG----VNGVGKILKKINKAIVSKKNK 86
Query: 90 PRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGL 149
++VAN V++ + ++ F +V++ V+F+ A+ +N W + ET +
Sbjct: 87 DIVTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPASACD-SINAWVKNETRDM 145
Query: 150 VKEVLPPGSVDNS-TRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM---- 204
+ +L P +D TRL+ NA+YFKG W F TK F +G S +VP +
Sbjct: 146 IDNLLSPDLIDGVLTRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQVPMLAQLS 205
Query: 205 ------TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP-DAKDGLPTLLEKMGSE 257
TS N + + LPY GE SM LP ++ L ++ + ++
Sbjct: 206 VFRCGSTSAPNDL-----WYNFIELPY-HGES---ISMLIALPTESSTPLSAIIPHISTK 256
Query: 258 S--KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSP 315
+ ++ +P +RV+V +P+F ++ F A++
Sbjct: 257 TIDSWMSIMVP-KRVQV---ILPKFTAVAQTDLKEPLKVLGITDMFDSSKANFAKITTG- 311
Query: 316 VGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDM 375
+NL+VS I QK+ IEV+E+GT+ ++ R S F+ D PF+F IR +
Sbjct: 312 -SENLHVSHILQKAKIEVSEDGTKASAATTAILIAR----SSPPWFIVDRPFLFFIRHNP 366
Query: 376 TGLVMFTGHVLNP 388
TG V+F G + P
Sbjct: 367 TGAVLFMGQINKP 379
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 31/377 (8%)
Query: 28 DSNLVFSPSSIHVLLSLISAGSKGPT---------LDQLLSF---LKSKSNDQLNAFASE 75
+ N+ + P +I L+++ G+K T D+L F ++++ +N +S
Sbjct: 24 NENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDXIEAQCGTSVNVHSS- 82
Query: 76 LVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVS 135
L ++ P+ S+A+ ++ +E + + Q V +Y+ ++FQT A +
Sbjct: 83 LRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAR 142
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
+N W E +TNG+++ VL P SVD+ T ++ NA+ FKG W + F T+ F +
Sbjct: 143 ELINSWVESQTNGIIRNVLQPXSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTE 202
Query: 196 GGSIKVPFMTSKKNQFVS--AFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEK 253
S V M V+ A + K+L LP+ G SM LPD GL L
Sbjct: 203 QESKPVQMMYQIGLFRVASMASEKMKILELPFAXG----TMSMLVLLPDEVSGLEQLESI 258
Query: 254 MGSESKFLDHHLPSQRVEVGDFRI--PRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEM 311
+ E L S +E ++ PR K+ ++ FS A +
Sbjct: 259 INFEK--LTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSS----ANL 312
Query: 312 VDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
+ L +S + E+NE G E V S+ +F ADHPF+F I
Sbjct: 313 SGISSAEXLKISQAVHAAHAEINEAGREVVGXAEAGVDAASV----SEEFRADHPFLFCI 368
Query: 372 REDMTGLVMFTGHVLNP 388
+ T V+F G ++P
Sbjct: 369 KHIATNAVLFFGRCVSP 385
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 163/354 (46%), Gaps = 31/354 (8%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL--KSKSNDQ 68
D+++++ + T +D N++FSP SI + + ++ G++G T ++ + S N +
Sbjct: 24 ADLSVNMYNRLRAT-GEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGE 82
Query: 69 LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ 128
+F E +V A S + +AN +++ + F Q++ + AA N VDF
Sbjct: 83 EFSFLKEFSNMVTAKESQY---VMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFS 139
Query: 129 TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKD 188
A V+ +N W E TN LVK+++ P D +T L NA+YFKG W F T+
Sbjct: 140 QNVA-VANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRT 198
Query: 189 YDFHLLNGGSIKVPFMTSKKNQFVSAF-DG-------FKVLGLPYKQGEDKRRFSMYFFL 240
+ F + +++P M + + F DG ++VL +PY+ E SM L
Sbjct: 199 FSFTKDDESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLEIPYEGDE----ISMMLVL 254
Query: 241 PDAKDGLPTLLEKMGSE-SKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
+ L TL + ++ + + + Q+VEV +PRF + I++
Sbjct: 255 SRQEVPLATLEPLVKAQLVEEWANSVKKQKVEV---YLPRFTVEQEIDLKDVLKALGITE 311
Query: 300 PFSGEGG--GLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLR 351
F + GL++ K +++S KSF+EVNEEG+E + R
Sbjct: 312 IFIKDANLTGLSD------NKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISR 359
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)
Query: 22 ALTEAKDS-NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVV 80
AL E+ + N+ SP SI L++I G++G T Q+ L + + +++ L A +
Sbjct: 19 ALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNADI 78
Query: 81 FADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNM 140
G+P L +AN ++ +++ + F +Y A VDFQ + +E+N
Sbjct: 79 NKPGAPY---ILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINE 135
Query: 141 WAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIK 200
W + +T G + E+L G VDN T+L+ NA+YFKG W + F T+D F L +
Sbjct: 136 WVKGQTEGKIPELLVKGMVDNMTKLVLVNAIYFKGNWQQKFMKEATRDAPFRLNKKDTKT 195
Query: 201 VPFMTSKKNQFVSAFDGFK--VLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSE- 257
V M KK + + K VL LPY QG + SM LPD + T LEK+ +
Sbjct: 196 VKMMYQKKKFPYNYIEDLKCRVLELPY-QG---KELSMIILLPDDIEDESTGLEKIEKQL 251
Query: 258 --SKFLDHHLPSQ--RVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVD 313
K + P EV + +PRFK+ +++ F+ G A++
Sbjct: 252 TLDKLREWTKPENLYLAEV-NVHLPRFKLEESYDLTSHLARLGVQDLFN---RGKADLSG 307
Query: 314 SPVGKNLYVSSIFQKSFIEVN 334
++L+VS I KSF+++N
Sbjct: 308 MSGARDLFVSKIIHKSFVDLN 328
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 183/405 (45%), Gaps = 49/405 (12%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS 59
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 48 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQIKR 105
Query: 60 FLKSKSNDQLNAFASELVAVVFA--DGSPSGGPRLSVANG--VWIDESLSLKNTFKQVVD 115
L ++ L L+ +F + S L + G +I + +K TF +
Sbjct: 106 GLHLQA---LKPTKPGLLPSLFKGLRETLSRNLELGLTQGSFAFIHKDFDVKETFFNLSK 162
Query: 116 NVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKG 175
+ ++F+ A++ R +N + KET G + ++ ++ T+LI + + FKG
Sbjct: 163 RYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKG 219
Query: 176 AWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD-GFK--VLGLPYKQGEDKR 232
W FD T+ FHL +IKVP M +F S FD F+ VL LPY QG
Sbjct: 220 KWLTPFDPVFTEVDTFHLDKYKTIKVPMMYG-AGKFASTFDKNFRCHVLKLPY-QGN--- 274
Query: 233 RFSMYFFLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVG---------DFRIPRFKIS 283
L L+EKMG L+ +L + VE + P+FK+
Sbjct: 275 -----------ATMLVVLMEKMGDHLA-LEDYLTTDLVETWLRNMKTRNMEVFFPKFKLD 322
Query: 284 FGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXX 343
E+ FS L+E+ S G+NL VS + Q++ IEV+E GTE
Sbjct: 323 QKYEMHELLRQMGIRRIFS-PFADLSEL--SATGRNLQVSRVLQRTVIEVDERGTEAVAG 379
Query: 344 XXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ S+ K+ D PF FMI E+ +G+++F G V+NP
Sbjct: 380 ILSEITAYSMPPVIKV----DRPFHFMIYEETSGMLLFLGRVVNP 420
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 183/405 (45%), Gaps = 49/405 (12%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS 59
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 10 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQIKR 67
Query: 60 FLKSKSNDQLNAFASELVAVVFA--DGSPSGGPRLSVANG--VWIDESLSLKNTFKQVVD 115
L ++ L L+ +F + S L + G +I + +K TF +
Sbjct: 68 GLHLQA---LKPTKPGLLPSLFKGLRETLSRNLELGLTQGSFAFIHKDFDVKETFFNLSK 124
Query: 116 NVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKG 175
+ ++F+ A++ R +N + KET G + ++ ++ T+LI + + FKG
Sbjct: 125 RYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKG 181
Query: 176 AWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD-GFK--VLGLPYKQGEDKR 232
W FD T+ FHL +IKVP M +F S FD F+ VL LPY QG
Sbjct: 182 KWLTPFDPVFTEVDTFHLDKYKTIKVPMMYG-AGKFASTFDKNFRCHVLKLPY-QGN--- 236
Query: 233 RFSMYFFLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVG---------DFRIPRFKIS 283
L L+EKMG L+ +L + VE + P+FK+
Sbjct: 237 -----------ATMLVVLMEKMGDHLA-LEDYLTTDLVETWLRNMKTRNMEVFFPKFKLD 284
Query: 284 FGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXX 343
E+ FS L+E+ S G+NL VS + Q++ IEV+E GTE
Sbjct: 285 QKYEMHELLRQMGIRRIFS-PFADLSEL--SATGRNLQVSRVLQRTVIEVDERGTEAVAG 341
Query: 344 XXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ S+ K+ D PF FMI E+ +G+++F G V+NP
Sbjct: 342 ILSEITAYSMPPVIKV----DRPFHFMIYEETSGMLLFLGRVVNP 382
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 166/373 (44%), Gaps = 28/373 (7%)
Query: 22 ALTEAKDSNLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSNDQ--LNAFASEL 76
AL + N+ FSP S+ + + AG++G T L Q L F D L+A+
Sbjct: 21 ALPSGPEKNVFFSPYSVSTAMGMAFAGARGQTQQELSQGLGFSDVDLTDAGVLDAYTHHT 80
Query: 77 VAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSR 136
+ +PS L VAN I +L+L N+++ + + + A ++VDF +
Sbjct: 81 ERL---KSTPSNST-LDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAAVD 136
Query: 137 EVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNG 196
VN W +++T+ ++++ +D T L+ NA+YFKG WN F T+ F NG
Sbjct: 137 FVNNWVKRKTHDKIEKLFNE-PLDPDTLLVLLNAIYFKGEWNTAFVKEHTEKRQF--FNG 193
Query: 197 GSIKVPFMTSKKNQFVSA--FDGFK--VLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLE 252
G V T + + FD + V+ LPY+ G D ++M LP G+ L +
Sbjct: 194 GVTPVEVDTMRLEARIKYRFFDDLQVEVVELPYR-GLD---YTMAILLPKENTGVEGLKQ 249
Query: 253 KMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMV 312
+ + ++L R +P+FK+ + F G L+ +
Sbjct: 250 NLTIDR--FQNYLSDLRERKITVLLPKFKLETKYSLKAPLQSLGIKQIFES-GADLSGIN 306
Query: 313 DSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIR 372
D +L VS++ K+ +EVNEEGT +V S+ + + F DHPF+F IR
Sbjct: 307 DG----SLRVSAVEHKAVVEVNEEGTVAAATTGVVIVPYSLG-PEPVVFRVDHPFLFFIR 361
Query: 373 EDMTGLVMFTGHV 385
T + F G V
Sbjct: 362 NTRTDDIFFVGQV 374
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 173/401 (43%), Gaps = 51/401 (12%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 29 SANVDFAFSLYKQLVL-KAPDKNVIFSPPSISTALAFLSLGAHNTTLTEILKGLKFNLTE 87
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 88 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 144
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 145 ATDFQDSAA-AKKLINDYVKNGTRGKITDLI--KDLDSQTMMVLVNYIFFKAKWEMPFDP 201
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 202 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 249
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 250 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 301
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEGTE
Sbjct: 302 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVK 357
Query: 348 VVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ L S ++ + + PF+ +I T + F V NP
Sbjct: 358 ITLLSALVETRTIVRFNRPFLMIIVPTDTQNIFFMSKVTNP 398
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 173/401 (43%), Gaps = 51/401 (12%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 39 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 97
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 98 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 154
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 155 ATDFQDSAA-AKKLINDYVKNGTRGKITDLI--KDLDSQTMMVLVNYIFFKAKWEMPFDP 211
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 212 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 259
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 260 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 311
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEGTE
Sbjct: 312 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGTEASGTTAVK 367
Query: 348 VVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ L S ++ + + PF+ +I T + F V NP
Sbjct: 368 ITLLSALVETRTITRFNRPFLMIIVPTDTQNIFFMSKVTNP 408
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 182/395 (46%), Gaps = 47/395 (11%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFMTS------KKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYF 238
T++ DFH+ ++KVP M + ++ +S++ VL + Y + F
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHSKKLSSW----VLLMKYLGNA-----TAIF 252
Query: 239 FLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXX 293
FLPD L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 253 FLPDEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLG 304
Query: 294 XXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSI 353
FS G L+ + + L +S K+ + ++E+GTE + RSI
Sbjct: 305 QLGITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPRSI 360
Query: 354 VLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
K + PFVF+I E T +F G V+NP
Sbjct: 361 PPEVKF----NKPFVFLIIEQNTKAPLFMGRVVNP 391
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 32/370 (8%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSNDQLNAFASELVAVVFAD-GS 85
N++FSP + LSL G+KG T + Q+L F K D F + V +D
Sbjct: 32 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVK--DVPFGFQT-----VTSDVNK 84
Query: 86 PSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKE 145
S L + +++D+SL+L F Y VDF+ K E ++N +
Sbjct: 85 LSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDL 144
Query: 146 TNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 205
T+G + +L SV++ T+++ NA YF G W + F S+TK+ F L + V M
Sbjct: 145 TDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKECPFRLNKTDTKPVQMMN 204
Query: 206 SKKNQFVSAFDGF--KVLGLPYKQGEDKRRFSMYFFLP----DAKDGLPTLLEKMGSESK 259
+ + D K++ LP++ + SM+ LP D GL + +++ SES
Sbjct: 205 MEATFCMGNIDSINCKIIELPFQN----KHLSMFILLPKDVEDESTGLEKIEKQLNSES- 259
Query: 260 FLDHHLPSQRVEVG-DFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGK 318
PS IP+FK+ I+ FS + + M ++ K
Sbjct: 260 LSQWTNPSTMANAKVKLSIPKFKVEKMIDPKACLENLGLKHIFSEDTSDFSGMSET---K 316
Query: 319 NLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGL 378
+ +S++ K +E+ E+G + V + +L K + ADHPF+++IR + T
Sbjct: 317 GVALSNVIHKVCLEITEDGGDSIE------VPGARILQHKDELNADHPFIYIIRHNKTRN 370
Query: 379 VMFTGHVLNP 388
++F G +P
Sbjct: 371 IIFFGKFCSP 380
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 179/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L +
Sbjct: 9 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 67
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 68 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 124
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 125 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 181
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 182 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 235
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 236 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 287
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 288 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 339
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF+I E T +F G V+NP
Sbjct: 340 IPPEVKFNKPFVFLIIEQNTKAPLFMGRVVNP 371
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 162/369 (43%), Gaps = 30/369 (8%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
N++FSP + LSL G+KG T + Q+L F K D F + V
Sbjct: 27 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVK--DVPFGFQTVTSDV----NKL 80
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKET 146
S L + +++D+SL+L F Y VDF+ K E ++N + T
Sbjct: 81 SSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLT 140
Query: 147 NGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTS 206
+G + +L SV++ T+++ NA YF G W + F S+TK+ F L + V M
Sbjct: 141 DGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKEXPFRLNKTDTKPVQMMNM 200
Query: 207 KKNQFVSAFDGF--KVLGLPYKQGEDKRRFSMYFFLP----DAKDGLPTLLEKMGSESKF 260
+ + D K++ LP++ + SM+ LP D GL + +++ SES
Sbjct: 201 EATFXMGNIDSINXKIIELPFQN----KHLSMFILLPKDVEDESTGLEKIEKQLNSES-L 255
Query: 261 LDHHLPSQRVEVG-DFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKN 319
PS IP+FK+ I+ FS + + M ++ K
Sbjct: 256 SQWTNPSTMANAKVKLSIPKFKVEKMIDPKACLENLGLKHIFSEDTSDFSGMSET---KG 312
Query: 320 LYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLV 379
+ +S++ K +E+ E+G + V + +L K + ADHPF+++IR + T +
Sbjct: 313 VALSNVIHKVXLEITEDGGDSIE------VPGARILQHKDELNADHPFIYIIRHNKTRNI 366
Query: 380 MFTGHVLNP 388
+F G +P
Sbjct: 367 IFFGKFXSP 375
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 179/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 255
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 256 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 307
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 308 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 359
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF+I + T +F G V+NP
Sbjct: 360 IPPEAKFNKPFVFLIIDQNTKAPLFMGRVVNP 391
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 181/400 (45%), Gaps = 47/400 (11%)
Query: 5 ESISNQTD-VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKS 63
+ +SN+T +L + +++ D N++FSP + V + + G+KG T Q+ + L
Sbjct: 56 QQLSNETSSFGFNLLRKISMRH--DGNVIFSPFGLSVAMVNLMLGTKGETKVQIENGLNL 113
Query: 64 KSNDQLNAFA-SELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAAS 122
++ Q L V S + LS + +I + +K T+ + +
Sbjct: 114 QALSQAGPLILPALFKKVKETFSSNRDLGLSQGSFAFIHKDFDIKETYFNLSKKYFDIEY 173
Query: 123 NQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFD 182
++FQ +++ +N KET G + ++ ++ T+LI + + FKG W FD
Sbjct: 174 VSINFQN-SSQARGLINHCIVKETEGKIPKLF--DEINPETKLILVDYVLFKGKWLTPFD 230
Query: 183 SSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDG---FKVLGLPYKQGEDKRRFSMYFF 239
S T+ FHL +IKVP M + N F S FD +L LPY QG
Sbjct: 231 PSFTEADTFHLDKYRAIKVPMMYREGN-FTSTFDKKFRCHILKLPY-QGN---------- 278
Query: 240 LPDAKDGLPTLLEKMGSESKFLDH-----------HLPSQRVEVGDFRIPRFKISFGIEV 288
L L+EK G D+ ++ ++++EV P+FK++ E+
Sbjct: 279 ----ATMLVVLMEKTGDYLALEDYLTVDLVETWLQNMKTRKMEVF---FPKFKLNQRYEM 331
Query: 289 SXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTV 348
FS L+E+ S + +NL VS + Q+S +EV+E GTE +
Sbjct: 332 HELLKQMGIRRLFST-SADLSEL--SAMARNLQVSRVLQQSVLEVDERGTEAVSGTLSEI 388
Query: 349 VLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ S+ + K+ + PF F+I E+M+ +++F G V+NP
Sbjct: 389 IAYSMPPAIKV----NRPFHFIIYEEMSRMLLFLGRVVNP 424
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 161/368 (43%), Gaps = 30/368 (8%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPTLDQLLS------FLKSKSNDQLNAFASELVAVVFAD 83
N+ +P I + +IS G KG T +Q+ S F+ + S ++ + +
Sbjct: 131 NIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRL 190
Query: 84 GSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAE 143
+ G L N ++I + + FK V Y A + DF + A +S+ N
Sbjct: 191 FRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADF-SDPAFISK-TNNHIM 248
Query: 144 KETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPF 203
K T GL+K+ L ++D +T+++ N +YFKG+W F T +++F L +KV
Sbjct: 249 KLTKGLIKDALE--NIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSM 306
Query: 204 MTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKF 260
M +K N F++A D +L L Y G SM +P G+ TL ++ +
Sbjct: 307 MQTKGN-FLAANDQELDCDILQLEYVGG-----ISMLIVVPHKMSGMKTLEAQL--TPRV 358
Query: 261 LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNL 320
++ S + +P+FK+ + F + G +A + D + +L
Sbjct: 359 VERWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQRIAIDL 417
Query: 321 YVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVM 380
+ + I VNEEGT+ + + LS ++ F D PF+F+I E T ++
Sbjct: 418 FK----HQGTITVNEEGTQ----ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLL 469
Query: 381 FTGHVLNP 388
F G V NP
Sbjct: 470 FMGRVANP 477
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 161/368 (43%), Gaps = 30/368 (8%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPTLDQLLS------FLKSKSNDQLNAFASELVAVVFAD 83
N+ +P I + +IS G KG T +Q+ S F+ + S ++ + +
Sbjct: 131 NIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRL 190
Query: 84 GSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAE 143
+ G L N ++I + + FK V Y A + DF + A +S+ N
Sbjct: 191 FRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADF-SDPAFISK-TNNHIM 248
Query: 144 KETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPF 203
K T GL+K+ L ++D +T+++ N +YFKG+W F T +++F L +KV
Sbjct: 249 KLTKGLIKDALE--NIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSM 306
Query: 204 MTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKF 260
M +K N F++A D +L L Y G SM +P G+ TL ++ +
Sbjct: 307 MQTKGN-FLAANDQELDCDILQLEYVGG-----ISMLIVVPHKMSGMKTLEAQL--TPRV 358
Query: 261 LDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNL 320
++ S + +P+FK+ + F + G +A + D + +L
Sbjct: 359 VERWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFD-KNGNMAGISDQRIAIDL 417
Query: 321 YVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVM 380
+ + I VNEEGT+ + + LS ++ F D PF+F+I E T ++
Sbjct: 418 FK----HQGTITVNEEGTQ----ATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLL 469
Query: 381 FTGHVLNP 388
F G V NP
Sbjct: 470 FMGRVANP 477
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 178/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+KG T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 255
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 256 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 307
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 308 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 359
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ E T +F G V+NP
Sbjct: 360 IPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 391
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 179/383 (46%), Gaps = 25/383 (6%)
Query: 7 ISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL-KSKS 65
I N D ++ L K+ + K+++L+ SP S + L++ + G+ TL Q+ L K S
Sbjct: 25 IYNTADFSIELFKNS--IDDKENSLI-SPLSAMLALAMTANGADNETLAQMEKALGKDIS 81
Query: 66 NDQLNAFASELVAVVFADGSPSG-GPRLSVANGVWIDESLSLKNT-FKQVVDNVYKAASN 123
+ LN + + P+ +L++AN +W E+ + + F Q++ + YKA
Sbjct: 82 IEDLNKYL-----YTYMKKLPNEEKSKLTIANSIWFKENDFMPSKDFLQIIADYYKADIF 136
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+ F + ++N W + +TNG++ ++L +D + NA+ F W ++
Sbjct: 137 KAAFDSSTV---SDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYEK 191
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDA 243
+ + F + G KV FM S++N ++ + + PY K +S LPD
Sbjct: 192 ASVHEDIFTDVYGNRQKVEFMNSEENLYIEEENAIGFVK-PYA----KNHYSFVAILPDE 246
Query: 244 KDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSG 303
+ ++ + + KF+D + + ++ + +P+FK + I+++ F
Sbjct: 247 NISVNEYIKTLTGQ-KFID-LIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLP 304
Query: 304 EGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVA 363
+ +++ S +G NLY+S + K+FI V+E GT+ + I ++ K
Sbjct: 305 DKADFSKLGKSDIG-NLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKT-VKL 362
Query: 364 DHPFVFMIREDMTGLVMFTGHVL 386
+ PF+F I ++ T L +F G VL
Sbjct: 363 NRPFIFAIIDNSTNLPIFIGTVL 385
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 30/369 (8%)
Query: 30 NLVFSPSSIHVLLSLISAGSKGPT---LDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
N++FSP ++ LSL G+KG T + Q+L F K D F + V
Sbjct: 41 NVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVK--DVPFGFQTVTSDV----NKL 94
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKET 146
S L + +++D+SL+L F Y VDF+ K E ++N + T
Sbjct: 95 SSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLT 154
Query: 147 NGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTS 206
+G + +L SV++ T+++ NA YF G W + F S+TK+ F + + V M
Sbjct: 155 DGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNM 214
Query: 207 KKNQFVSAFDGF--KVLGLPYKQGEDKRRFSMYFFLP----DAKDGLPTLLEKMGSESKF 260
+ + D K++ LP++ + SM+ LP D GL + +++ SES
Sbjct: 215 EATFSMGNIDSINSKIIELPFQN----KHLSMFILLPKDVEDESTGLEKIEKQLNSES-L 269
Query: 261 LDHHLPSQRVEVG-DFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKN 319
PS IP+FK+ I+ FS + + M ++ K
Sbjct: 270 SQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSET---KG 326
Query: 320 LYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLV 379
+ +S++ K +E+ E+G + V + +L K + ADHPF+++IR + T +
Sbjct: 327 VALSNVIHKVSLEITEDGGDSIE------VPGARILQHKDELNADHPFIYIIRHNKTRNI 380
Query: 380 MFTGHVLNP 388
+F G +P
Sbjct: 381 IFFGKFSSP 389
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 179/383 (46%), Gaps = 25/383 (6%)
Query: 7 ISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL-KSKS 65
I N D ++ L K+ + K+++L+ SP S + L++ + G+ TL Q+ L K S
Sbjct: 18 IYNTADFSIELFKNS--IDDKENSLI-SPLSAMLALAMTANGADNETLAQMEKALGKDIS 74
Query: 66 NDQLNAFASELVAVVFADGSPSG-GPRLSVANGVWIDESLSLKNT-FKQVVDNVYKAASN 123
+ LN + + P+ +L++AN +W E+ + + F Q++ + YKA
Sbjct: 75 IEDLNKYL-----YTYMKKLPNEEKSKLTIANSIWFKENDFMPSKDFLQIIADYYKADIF 129
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+ F + ++N W + +TNG++ ++L +D + NA+ F W ++
Sbjct: 130 KAAFDSSTV---SDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYEK 184
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDA 243
+ + F + G KV FM S++N ++ + + PY K +S LPD
Sbjct: 185 ASVHEDIFTDVYGNRQKVEFMNSEENLYIEEENAIGFVK-PYA----KNHYSFVAILPDE 239
Query: 244 KDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSG 303
+ ++ + + KF+D + + ++ + +P+FK + I+++ F
Sbjct: 240 NISVNEYIKTLTGQ-KFID-LIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLP 297
Query: 304 EGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVA 363
+ +++ S +G NLY+S + K+FI V+E GT+ + I ++ K
Sbjct: 298 DKADFSKLGKSDIG-NLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKT-VKL 355
Query: 364 DHPFVFMIREDMTGLVMFTGHVL 386
+ PF+F I ++ T L +F G VL
Sbjct: 356 NRPFIFAIIDNSTNLPIFIGTVL 378
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 179/383 (46%), Gaps = 25/383 (6%)
Query: 7 ISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL-KSKS 65
I N D ++ L K+ + K+++L+ SP S + L++ + G+ TL Q+ L K S
Sbjct: 10 IYNTADFSIELFKNS--IDDKENSLI-SPLSAMLALAMTANGADNETLAQMEKALGKDIS 66
Query: 66 NDQLNAFASELVAVVFADGSPSG-GPRLSVANGVWIDESLSLKNT-FKQVVDNVYKAASN 123
+ LN + + P+ +L++AN +W E+ + + F Q++ + YKA
Sbjct: 67 IEDLNKYL-----YTYMKKLPNEEKSKLTIANSIWFKENDFMPSKDFLQIIADYYKADIF 121
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+ F + ++N W + +TNG++ ++L +D + NA+ F W ++
Sbjct: 122 KAAFDSSTV---SDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYEK 176
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDA 243
+ + F + G KV FM S++N ++ + + PY K +S LPD
Sbjct: 177 ASVHEDIFTDVYGNRQKVEFMNSEENLYIEEENAVGFVK-PYA----KNHYSFVAILPDE 231
Query: 244 KDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSG 303
+ ++ + + KF+D + + ++ + +P+FK + I+++ F
Sbjct: 232 NISVNEYIKTLTGQ-KFID-LIKNAKITLVRASLPKFKYEYTIKMNETLESLGMTDAFLP 289
Query: 304 EGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVA 363
+ +++ S +G NLY+S + K+FI V+E GT+ + I ++ K
Sbjct: 290 DKADFSKLGKSDIG-NLYISEVLHKTFISVDELGTKAGAVTSVDITAAGIPVNFKT-VKL 347
Query: 364 DHPFVFMIREDMTGLVMFTGHVL 386
+ PF+F I ++ T L +F G VL
Sbjct: 348 NRPFIFAIIDNSTNLPIFIGTVL 370
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 182/395 (46%), Gaps = 47/395 (11%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 6 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 64
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 65 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 121
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 122 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 178
Query: 185 KTKDYDFHLLNGGSIKVPFMTS------KKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYF 238
T++ DFH+ ++KVP M + ++ +S++ VL + Y + F
Sbjct: 179 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHSKKLSSW----VLLMKYLGNA-----TAIF 229
Query: 239 FLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXX 293
FLPD L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 230 FLPDEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLCITGTYDLKSVLG 281
Query: 294 XXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSI 353
FS G L+ + + L +S K+ + ++E+GTE + RSI
Sbjct: 282 QLGITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLCIDEKGTEAAGAMFLEAIPRSI 337
Query: 354 VLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
++ F + PFVF++ E T +F G V+NP
Sbjct: 338 --PPEVKF--NKPFVFLMIEQNTKSPLFMGKVVNP 368
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 153/343 (44%), Gaps = 37/343 (10%)
Query: 11 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLN 70
+D + + + VA +KD N+VFSP + +L+++ + G T Q+ + + K +D+
Sbjct: 13 SDFGVRVFQQVA-QASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDK-- 69
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A L + P +S + +++ L L F ++++ QVDF
Sbjct: 70 GMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDF--- 126
Query: 131 AAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
+EV R +N W + T G++ +L G+VD TRL+ NALYF G W F S T
Sbjct: 127 -SEVERARFIINDWVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTH 185
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQF----VSAFDG--FKVLGLPYKQGEDKRRFSMYFFLP 241
FH +G ++ VP M ++ N+F + DG + +L LPY G+ SM+ P
Sbjct: 186 RRLFHKSDGSTVSVPMM-AQTNKFNYTEFTTPDGHYYDILELPY-HGDT---LSMFIAAP 240
Query: 242 DAKDGLPTLLEKMGSESKFLDH------HLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
K+ + L + S ++ + H LP V +P+F + +++
Sbjct: 241 YEKEVPLSALTNILS-AQLISHWKGNMTRLPRLLV------LPKFSLETEVDLRKPLENL 293
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGT 338
F + D + L+V+ QK IEVNE GT
Sbjct: 294 GMTDMFRQFQADFTSLSDQ---EPLHVAQALQKVKIEVNESGT 333
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 177/396 (44%), Gaps = 49/396 (12%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N++FSP SI +++S G+K T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFM-------TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMY 237
T++ DFH+ ++KVP M + S K LG +
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHXKKLSSWVLLMKYLG----------NATAI 251
Query: 238 FFLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXX 292
FFLPD L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 252 FFLPDEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVL 303
Query: 293 XXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
FS G L+ + + L +S K+ + ++E+GTE + L +
Sbjct: 304 GQLGITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEA 355
Query: 353 IVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
I +S + + PFVF++ E T +F G V+NP
Sbjct: 356 IPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 391
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 178/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+KG T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKGDTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 255
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 256 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 307
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 308 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 359
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ + T +F G V+NP
Sbjct: 360 IPPEVKFNKPFVFLMIDQNTKSPLFMGKVVNP 391
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 182/388 (46%), Gaps = 31/388 (7%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS----FLKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 32 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 90
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 91 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 147
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+F+ A + +++N + K+T G + ++L ++D++ +I N ++FK W +F+
Sbjct: 148 PTNFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNH 204
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFL 240
T++ DF++ + ++VP M S+++Q+ D +V+G+PY QG + F L
Sbjct: 205 KGTQEQDFYVTSETVVRVPMM-SREDQYHYLLDRNLSCRVVGVPY-QGNA----TALFIL 258
Query: 241 PDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
P +G +E G K L L + + +P+F I ++
Sbjct: 259 PS--EGKMQQVEN-GLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 315
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKID 360
F+ A++ N+ VS + K+ +EV+E GT RS L+ +
Sbjct: 316 FTSH----ADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQ-R 370
Query: 361 FVADHPFVFMIREDMTGLVMFTGHVLNP 388
V + PF+ I ++ ++F G V P
Sbjct: 371 LVFNRPFLMFIVDNN---ILFLGKVNRP 395
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 49/396 (12%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFM-------TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMY 237
T++ DFH+ ++KVP M + S K LG +
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHXKKLSSWVLLMKYLG----------NATAI 251
Query: 238 FFLPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXX 292
FFLPD L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 252 FFLPDEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVL 303
Query: 293 XXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
FS G L+ + + L +S K+ + ++E+GTE + L +
Sbjct: 304 GQLGITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEA 355
Query: 353 IVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
I +S + + PFVF++ E T +F G V+NP
Sbjct: 356 IPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 391
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 178/390 (45%), Gaps = 33/390 (8%)
Query: 8 SNQTDVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS----FLK 62
S D A SL KH VAL+ K N+ SP SI + L+++S G+ G T QLL L
Sbjct: 9 SANVDFAFSLYKHLVALSPKK--NIFISPVSISMALAMLSLGTCGHTRAQLLQGLGFNLT 66
Query: 63 SKSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAAS 122
+S +++ L +FA S +++ N +++D SL L +F + + Y++
Sbjct: 67 ERSETEIHQGFQHL-HQLFAKSDTS--LEMTMGNALFLDGSLELLESFSADIKHYYESEV 123
Query: 123 NQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFD 182
++FQ A SR++N + + +T G + ++ +D+ L+ N ++FKG W + FD
Sbjct: 124 LAMNFQ-DWATASRQINSYVKNKTQGKIVDLF--SGLDSPAILVLVNYIFFKGTWTQPFD 180
Query: 183 SSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYK--QGEDKRRFSMYFFL 240
+ T++ +F++ +KVP M S LP + Q +++F L
Sbjct: 181 LASTREENFYVDETTVVKVPMMLQS-----STISYLHDSELPCQLVQMNYVGNGTVFFIL 235
Query: 241 PDAKDGLPTLLEKMGSES-KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
PD K + T++ + ++ L S +V D IP+ IS ++
Sbjct: 236 PD-KGKMNTVIAALSRDTINRWSAGLTSSQV---DLYIPKVTISGVYDLGDVLEEMGIAD 291
Query: 300 PFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKI 359
F+ + D+ L S + K+ +++NEEGTE + L +I S I
Sbjct: 292 LFTTQANFSRITQDA----QLKSSKVVHKAVLQLNEEGTE----AAGAMFLEAIPRSKPI 343
Query: 360 DFVADHPFVFMIREDMTGLVMFTGHVLNPL 389
+ PF+ MI + T +F V+NP+
Sbjct: 344 ILRFNQPFIIMIFDHFTWSSLFLARVMNPV 373
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 177/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 59 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 117
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 118 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 174
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 175 VNF-GDTEEAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVK 231
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 232 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 285
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 286 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 337
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 338 ITKVFSN-GADLSGVTEE---APLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 389
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ E T +F G V+NP
Sbjct: 390 IPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 421
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 177/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 39 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 97
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 98 PEAQIHEGFQELLRTL---NQPDSQLQLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 154
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 155 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 211
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 212 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 265
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 266 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 317
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 318 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 369
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ E T +F G V+NP
Sbjct: 370 IPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 401
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 177/392 (45%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 202 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 255
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 256 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 307
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 308 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 359
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ E T +F G V+NP
Sbjct: 360 IPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 391
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 181/387 (46%), Gaps = 31/387 (8%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS----FLKSK 64
++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 1 SRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKS 59
Query: 65 SNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
S +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 60 SEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFP 116
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
+F+ A + +++N + K+T G + ++L ++D++ +I N ++FK W +F+
Sbjct: 117 TNFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHK 173
Query: 185 KTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DF++ + ++VP M S+++Q+ D +V+G+PY QG + F LP
Sbjct: 174 GTQEQDFYVTSETVVRVPMM-SREDQYHYLLDRNLSCRVVGVPY-QGNA----TALFILP 227
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPF 301
+G +E G K L L + + +P+F I ++ F
Sbjct: 228 S--EGKMQQVEN-GLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNVF 284
Query: 302 SGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDF 361
+ A++ N+ VS + K+ +EV+E GT RS L+ +
Sbjct: 285 TSH----ADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRSARLNSQ-RL 339
Query: 362 VADHPFVFMIREDMTGLVMFTGHVLNP 388
V + PF+ I ++ ++F G V P
Sbjct: 340 VFNRPFLMFIVDNN---ILFLGKVNRP 363
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 171/397 (43%), Gaps = 33/397 (8%)
Query: 1 MDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL--- 57
M +E D+ L K +A N+ SP SI S++ G++ TLD++
Sbjct: 43 MAAKELARQNMDLGFKLLKKLAFYNP-GRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQG 101
Query: 58 LSFLKSKSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNV 117
+F K D F ++ + +LS+ N ++ID+ L + F + N
Sbjct: 102 FNFRKMPEKDLHEGFH----YIIHELTQKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNF 157
Query: 118 YKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAW 177
Y A + +FQ +++N + ++T+G + ++ ++D T ++ AN ++F+ W
Sbjct: 158 YSAETILTNFQN-LEMAQKQINDFISQKTHGKINNLIE--NIDPGTVMLLANYIFFRARW 214
Query: 178 NETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRF 234
FD + TK+ DF L S+KVP M + + +D +L +PY ++
Sbjct: 215 KHEFDPNVTKEEDFFLEKNSSVKVPMMF-RSGIYQVGYDDKLSCTILEIPY-----QKNI 268
Query: 235 SMYFFLPDAKDGLPTLLEKMGSESKFLD-HHLPSQRVEVGDFRIPRFKISFGIEVSXXXX 293
+ F LPD +G LEK F L S+RV D +PR ++ ++
Sbjct: 269 TAIFILPD--EGKLKHLEKGLQVDTFSRWKTLLSRRVV--DVSVPRLHMTGTFDLKKTLS 324
Query: 294 XXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSI 353
F E G L ++ ++L V K+ ++++E GTE +
Sbjct: 325 YIGVSKIFE-EHGDLTKIAPH---RSLKVGEAVHKAELKMDERGTEGAAGTGAQTLPMET 380
Query: 354 VLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNPLA 390
L KI D P++ +I + V+F G ++NP+
Sbjct: 381 PLVVKI----DKPYLLLIYSEKIPSVLFLGKIVNPIG 413
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 157/363 (43%), Gaps = 51/363 (14%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 229
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 230 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 281
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEGTE
Sbjct: 282 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGTERSAATAVK 337
Query: 348 VVL 350
+ L
Sbjct: 338 ITL 340
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 157/363 (43%), Gaps = 51/363 (14%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 229
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 230 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 281
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEGTE
Sbjct: 282 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGTEASRATAVK 337
Query: 348 VVL 350
+ L
Sbjct: 338 ITL 340
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 157/363 (43%), Gaps = 51/363 (14%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 28 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 86
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 87 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 143
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 144 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 200
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 201 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 248
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 249 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 300
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEGTE
Sbjct: 301 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVK 356
Query: 348 VVL 350
+ L
Sbjct: 357 ITL 359
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 176/392 (44%), Gaps = 41/392 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 39 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 97
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ N +++ E L L + F + V +Y + +
Sbjct: 98 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFT 154
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 155 VNF-GDTEEAKKQINDYVEKGTQGKIVDLV--KELDRDTVFALVNYIFFKGKWERPFEVK 211
Query: 185 KTKDYDFHLLNGGSIKVPFMTSK---KNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLP 241
T++ DFH+ ++KVP M Q + VL + Y + FFLP
Sbjct: 212 DTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSW-VLLMKYLGNA-----TAIFFLP 265
Query: 242 DAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIEVSXXXXXXX 296
D L+ + +E L H + ++ +E D R +P+ I+ ++
Sbjct: 266 DEGK-----LQHLENE---LTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLG 317
Query: 297 XXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLS 356
FS G L+ + + L +S K+ + ++E+GTE + L +I +S
Sbjct: 318 ITKVFSN-GADLSGVTEEA---PLKLSKAVHKAVLTIDEKGTE----AAGAMFLEAIPMS 369
Query: 357 DKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + PFVF++ E T +F G V+NP
Sbjct: 370 IPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNP 401
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 51/363 (14%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----S 63
S D A SL K + L +A D N++FSP SI L+ +S G+ TL ++L LK
Sbjct: 9 SANVDFAFSLYKQLVL-KAPDKNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTE 67
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +++ L+ + S +LS+ N +++ E LSL + F + +Y + +
Sbjct: 68 TSEAEIHQSFQHLLRTL---NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAF 124
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
DFQ AA + +N + + T G + +++ +D+ T ++ N ++FK W FD
Sbjct: 125 ATDFQDSAA-AKKLINDYVKNGTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDP 181
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF--- 234
T F+L + VP M+ L +PY + E+ + ++
Sbjct: 182 QDTHQSRFYLSKKKWVMVPMMS------------LHHLTIPYFRDEELSCTVVELKYTGN 229
Query: 235 -SMYFFLPDAKDGLPTLLEKMGS-ESKFLDHHLPSQR-----VEVGDFRIPRFKISFGIE 287
S F LPD +KM E+ L L R E+G+ +P+F IS
Sbjct: 230 ASALFILPDQ--------DKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDYN 281
Query: 288 VSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXT 347
++ F+ + A++ +NL VS + K+ ++V EEG E
Sbjct: 282 LNDILLQLGIEEAFTSK----ADLSGITGARNLAVSQVVHKAVLDVFEEGREASAATAVK 337
Query: 348 VVL 350
+ L
Sbjct: 338 ITL 340
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 21/257 (8%)
Query: 92 LSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVK 151
+ +AN +++ + F Q++ + A N VDF A V+ +N W E TN L+K
Sbjct: 6 MKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDFSQNVA-VANSINKWVENYTNSLLK 64
Query: 152 EVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 211
+++ P D T L NA+YFKG W F T+ + F + +++P M + +
Sbjct: 65 DLVSPEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFY 124
Query: 212 VSAF-DG-------FKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSE-SKFLD 262
F DG ++VL +PY+ E SM L + L TL + ++ +
Sbjct: 125 YGEFSDGSNEAGGIYQVLEIPYEGDE----ISMMLALSRQEVPLATLEPLLKAQLIEEWA 180
Query: 263 HHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYV 322
+ + Q+VEV +PRF + I++ F + L M D K L++
Sbjct: 181 NSVKKQKVEV---YLPRFTVEQEIDLKDILKALGVTEIFIKD-ANLTAMSDK---KELFL 233
Query: 323 SSIFQKSFIEVNEEGTE 339
S KS IEVNEEG+E
Sbjct: 234 SKAVHKSCIEVNEEGSE 250
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 165/352 (46%), Gaps = 27/352 (7%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS----FLKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 14 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 72
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 73 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 129
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+F+ A + +++N + K+T G + ++L ++D++ +I N ++FK W +F+
Sbjct: 130 PTNFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNH 186
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFL 240
T++ DF++ + ++VP M S+++Q+ D +V+G+PY QG + F L
Sbjct: 187 KGTQEQDFYVTSETVVRVPMM-SREDQYHYLLDRNLSCRVVGVPY-QGNA----TALFIL 240
Query: 241 PDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
P +G +E G K L L + + +P+F I ++
Sbjct: 241 PS--EGKMQQVEN-GLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 297
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRS 352
F+ A++ N+ VS + K+ +EV+E GT RS
Sbjct: 298 FTSH----ADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRS 345
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 163/339 (48%), Gaps = 27/339 (7%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS----FLKS 63
S++ D L + +A + A N+ FSP SI + L+++S G+ T Q+L L+
Sbjct: 7 SSRRDFTFDLYRALA-SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQK 65
Query: 64 KSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASN 123
S +L+ +L+ + P G +LS+ N ++ D + L++TF + +Y A +
Sbjct: 66 SSEKELHRGFQQLLQEL---NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTF 122
Query: 124 QVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
+F+ A + +++N + K+T G + ++L ++D++ +I N ++FK W +F+
Sbjct: 123 PTNFRDSAGAM-KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNH 179
Query: 184 SKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFL 240
T++ DF++ + ++VP M S+++Q+ D +V+G+PY QG + F L
Sbjct: 180 KGTQEQDFYVTSETVVRVPMM-SREDQYHYLLDRNLSCRVVGVPY-QGNA----TALFIL 233
Query: 241 PDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXP 300
P +G +E G K L L + + +P+F I ++
Sbjct: 234 PS--EGKMQQVEN-GLSEKTLRKWLKMFKKRQLELYLPKFSIEGSYQLEKVLPSLGISNV 290
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
F+ A++ N+ VS + K+ +EV+E GT
Sbjct: 291 FTSH----ADLSGISNHSNIQVSEMVHKAVVEVDESGTR 325
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 173/398 (43%), Gaps = 46/398 (11%)
Query: 8 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----- 62
S TD A SL K + L D+N+VFSP SI L+L+S G+KG TL+++L LK
Sbjct: 29 SINTDFAFSLYKELVLKNP-DTNIVFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTE 87
Query: 63 SKSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAAS 122
+ D F L + P ++S + ++I++ + F++ +Y+A +
Sbjct: 88 TSEADIHQGFGHLLQRL----NQPKDQVQISTGSALFIEKRQQILTEFQEKAKTLYQAEA 143
Query: 123 NQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFD 182
DFQ + + + +N + K+T G++KE++ +D T ++ N +YFK W FD
Sbjct: 144 FTADFQ-QPRQAKKLINDYVRKQTQGMIKELV--SDLDKRTLMVLVNYIYFKAKWKVPFD 200
Query: 183 SSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGED------KRRF-- 234
T +F+ + VP M+ + L PY + E+ + ++
Sbjct: 201 PLDTFKSEFYCGKRRPVIVPMMSMED------------LTTPYFRDEELSCTVVELKYTG 248
Query: 235 --SMYFFLPDAKDGLPTLLEKMGSES--KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSX 290
S F LPD + + + + E+ K+ + P + + +P+F IS +
Sbjct: 249 NASALFILPD-QGRMQQVEASLQPETLRKWKNSLKPRM---IDELHLPKFSISTDYSLED 304
Query: 291 XXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVL 350
FS + A++ K+L VS + K+ ++V E GTE V
Sbjct: 305 VLSKLGIREVFSTQ----ADLSAITGTKDLRVSQVVHKAVLDVAETGTEAAAATGVKFVP 360
Query: 351 RSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
S L + + PF+ MI + T + F + NP
Sbjct: 361 MSAKLY-PLTVYFNRPFLIMIFDTETEIAPFIAKIANP 397
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 157/355 (44%), Gaps = 43/355 (12%)
Query: 1 MDVRESISNQT-DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS 59
M R+ ++ +T + SL + +++ D N+VFSP + + ++ + G+ GPT Q+
Sbjct: 48 MASRQQLAKETSNFGFSLLRKISMRH--DGNMVFSPFGMSLAMTGLMLGATGPTETQIKR 105
Query: 60 FLKSKSNDQLNAFASELVAVVFA--DGSPSGGPRLSVANG--VWIDESLSLKNTFKQVVD 115
L ++ L L+ +F + S L + G +I + +K TF +
Sbjct: 106 GLHLQA---LKPTKPGLLPSLFKGLRETLSRNLELGLTQGSFAFIHKDFDVKETFFNLSK 162
Query: 116 NVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKG 175
+ ++F+ A++ R +N + KET G + ++ ++ T+LI + + FKG
Sbjct: 163 RYFDTECVPMNFRN-ASQAKRLMNHYINKETRGKIPKLF--DEINPETKLILVDYILFKG 219
Query: 176 AWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFD-GFK--VLGLPYKQGEDKR 232
W FD T+ FHL +IKVP M +F S FD F+ VL LPY QG
Sbjct: 220 KWLTPFDPVFTEVDTFHLDKYKTIKVPMMYG-AGKFASTFDKNFRCHVLKLPY-QGN--- 274
Query: 233 RFSMYFFLPDAKDGLPTLLEKMGSESKFLDH--------HLPSQRVEVGDFRIPRFKISF 284
L L+EKMG D+ L + + + P+FK+
Sbjct: 275 -----------ATMLVVLMEKMGDHLALEDYLTTDLVETWLRNMKTRNMEVFFPKFKLDQ 323
Query: 285 GIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
E+ FS L+E+ S G+NL VS + Q++ IEV+E GTE
Sbjct: 324 KYEMHELLRQMGIRRIFS-PFADLSEL--SATGRNLQVSRVLQRTVIEVDERGTE 375
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N++FSP SI +++S G+KG T D++L L +
Sbjct: 29 NLAEFAFSLYRQLA-HQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI 87
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 88 PEAQIHEGFQELLHTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 144
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 145 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 201
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 202 DTEEEDFHVDQVTTVKVPMM 221
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 132/300 (44%), Gaps = 13/300 (4%)
Query: 92 LSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVK 151
+ ++ G++++++ ++ F + + N + QVDF + + + ++N W ++++NGL++
Sbjct: 115 VRISTGIFVEKTYEVERRFNESIANDSEGELKQVDFSNRTS-ATVDINDWVDQQSNGLLE 173
Query: 152 EVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 211
+ + + T I N YF+ W F+ T+ DF++ I V T +
Sbjct: 174 KFFT-DDIPDDTAXILVNVFYFRDFWQSPFEPHYTRKEDFYISPDRQITVDXXTQEGVXK 232
Query: 212 VSAF--DGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSESKFLDHHLPSQR 269
F +GF+++ P + RF+ LP K L E + +K L ++ + +
Sbjct: 233 YGKFEDEGFEIVSKPL----NNTRFTFVIVLPLEKWSLNGATELLNG-NKVLSEYVKNLK 287
Query: 270 VEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKS 329
R+P+F + +++ F L+ + +P NLYV+ Q +
Sbjct: 288 ETTVSLRLPKFTLKNTLDLVPTLKSIGVVDLFDPVKSDLSGITPNP---NLYVNEFIQTN 344
Query: 330 FIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVMFTGHVLNPL 389
+++NE G E V S ++ + +DF HPF+ I + + V NP+
Sbjct: 345 VLKLNESGIEATTVTSPIFVPFSAIIPE-VDFHVTHPFICFIYDQQLTXPIXAAKVXNPV 403
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 10 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 68
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 69 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 125
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 126 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 182
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 183 DTEEEDFHVDQVTTVKVPMM 202
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 14 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 72
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 73 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 129
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 130 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 186
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 187 DTEEEDFHVDQVTTVKVPMM 206
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 18 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 76
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 77 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 133
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 134 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 190
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 191 DTEEEDFHVDQVTTVKVPMM 210
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 6 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 64
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 65 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 121
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 122 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 178
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 179 DTEEEDFHVDQVTTVKVPMM 198
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSND- 67
N + A SL + +A ++ +N+ FSP SI +++S G+K T D++L L +
Sbjct: 14 NLAEFAFSLYRQLA-HQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI 72
Query: 68 ---QLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQ 124
Q++ EL+ + P +L+ NG+++ E L L + F + V +Y + +
Sbjct: 73 PEAQIHEGFQELLRTL---NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFT 129
Query: 125 VDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSS 184
V+F E +++N + EK T G + +++ +D T N ++FKG W F+
Sbjct: 130 VNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVK 186
Query: 185 KTKDYDFHLLNGGSIKVPFM 204
T++ DFH+ ++KVP M
Sbjct: 187 DTEEEDFHVDQVTTVKVPMM 206
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 43/368 (11%)
Query: 29 SNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSPSG 88
SNLV SP S+ + LS ++ G++ TL L L + L L++ + + P G
Sbjct: 43 SNLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNTGSCL----PHLLSHFYQNLGP-G 97
Query: 89 GPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNG 148
RL A +++ + +K+ F + + ++ A V K E +N W ++ T G
Sbjct: 98 TIRL--AARIYLQKGFPIKDDFLEQSERLFGAKP--VKLTGKQEEDLANINQWVKEATEG 153
Query: 149 LVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 208
+++ L + +ST L+ NA++F G W FD S T+ FHL ++ V M +
Sbjct: 154 KIEDFL--SELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDFFHLDERFTVSVDMMHAVS 211
Query: 209 ---NQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSES----KFL 261
F+ +V P+K +M F + +PT E SE +
Sbjct: 212 YPLRWFLLEQPEIQVAHFPFKN-------NMSFVV-----VMPTYFEWNVSEVLANLTWD 259
Query: 262 DHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSG-EGGGLAEMVDSPVGKNL 320
+ PS + +P+ + +++ F G + G++E +NL
Sbjct: 260 TLYHPSLQERPTKVWLPKLHLQQQLDLVATLSQLGLQELFQGPDLRGISE-------QNL 312
Query: 321 YVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMIREDMTGLVM 380
VSS+ +S +E++E G E +V + + LS F + PF+F I ED G+ +
Sbjct: 313 VVSSVQHQSTMELSEAGVE--AAAATSVAMNRMSLS---SFTVNRPFLFFIMEDTIGVPL 367
Query: 381 FTGHVLNP 388
F G V NP
Sbjct: 368 FVGSVRNP 375
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 22/205 (10%)
Query: 9 NQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ 68
N + A SL + +A +N+ FSP SI +++S G+K T D++L +
Sbjct: 5 NLAEFAFSLYRQLA--HQSSTNIFFSPVSIATAFAMLSLGTKADTHDEIL--------EG 54
Query: 69 LNAFASELVAVVFADG---------SPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYK 119
LN +E+ +G P +L+ NG+++ E L L + F + V +Y
Sbjct: 55 LNFNLTEIPEAAIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYH 114
Query: 120 AASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNE 179
+ + V+F E +++N + EK T G + +++ +D T N ++FKG W
Sbjct: 115 SEAFTVNF-GDTEEAKKQINDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWER 171
Query: 180 TFDSSKTKDYDFHLLNGGSIKVPFM 204
F+ T++ DFH+ ++KVP M
Sbjct: 172 PFEVKDTEEEDFHVDQVTTVKVPMM 196
>pdb|4AU2|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU4|A Chain A, Crystal Structure Of Hsp47
pdb|4AU4|B Chain B, Crystal Structure Of Hsp47
pdb|4AU4|C Chain C, Crystal Structure Of Hsp47
pdb|4AU4|D Chain D, Crystal Structure Of Hsp47
pdb|4AU4|E Chain E, Crystal Structure Of Hsp47
pdb|4AU4|F Chain F, Crystal Structure Of Hsp47
pdb|4AU4|G Chain G, Crystal Structure Of Hsp47
pdb|3ZHA|A Chain A, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|B Chain B, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|C Chain C, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|D Chain D, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|K Chain K, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|L Chain L, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|P Chain P, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|Q Chain Q, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition
Length = 392
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 171/391 (43%), Gaps = 46/391 (11%)
Query: 13 VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKS--NDQLN 70
+A SL + +A +A + N++ SP + L L+S G K T Q + L ++ +++++
Sbjct: 16 LAFSLYQAMAKDQAVE-NILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEVH 74
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A EL+ + S + + + ++ S+S F + Y ++++F+ K
Sbjct: 75 AGLGELLRSL--SNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDK 132
Query: 131 AAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYD 190
+ + + +N WA + T+G + EV V+ + + NA++FK W+E F +
Sbjct: 133 RSAL-QSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDEKFHHKMVDNRG 189
Query: 191 FHLLNGGSIKVPFM--TSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLP 248
F + ++ V M T N + + +++ +P + S+ +P + L
Sbjct: 190 FMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAH----KLSSLIILMPHHVEPLE 245
Query: 249 TLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFG---IEVSXXXXXXXXXXPFSGEG 305
LEK+ ++ + ++ +G + IS +EV+ G
Sbjct: 246 R-LEKLLTKEQL--------KIWMGKMQKKAVAISLPKGVVEVTHDLQKHLA-------G 289
Query: 306 GGLAEMVDSPVG--------KNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSD 357
GL E +D K+LY++S+F + E + EG LRS L
Sbjct: 290 LGLTEAIDKNKADLSRMSGKKDLYLASVFHATAFEWDTEGNPFDQDIYGREELRSPKL-- 347
Query: 358 KIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
F ADHPF+F++R+ +G ++F G ++ P
Sbjct: 348 ---FYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 29/344 (8%)
Query: 4 RESISNQTDVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLS--- 59
R S D A SL KH VAL+ K N+ SP SI + L+++S G+ G T QLL
Sbjct: 6 RGLASANVDFAFSLYKHLVALSPKK--NIFISPVSISMALAMLSLGTCGHTRAQLLQGLG 63
Query: 60 -FLKSKSNDQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVY 118
L +S +++ L +FA S +++ N +++D SL L +F + + Y
Sbjct: 64 FNLTERSETEIHQGFQHL-HQLFAKSDTS--LEMTMGNALFLDGSLELLESFSADIAHYY 120
Query: 119 KAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWN 178
++ ++FQ A SR++N + + +T G + ++ +D+ L+ N ++FKG W
Sbjct: 121 ESEVLAMNFQ-DWATASRQINSYVKNKTQGKIVDLFS--GLDSPAILVLVNYIFFKGTWT 177
Query: 179 ETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYK--QGEDKRRFSM 236
+ FD + T++ +F++ +KVP M S LP + Q ++
Sbjct: 178 QPFDLASTREENFYVDETTVVKVPMMLQS-----STISYLHDSELPCQLVQMNYVGNGTV 232
Query: 237 YFFLPDAKDGLPTLLEKMGSES-KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXX 295
+F LPD K + T++ + ++ L S +V D IP+ IS ++
Sbjct: 233 FFILPD-KGKMNTVIAALSRDTINRWSAGLTSSQV---DLYIPKVTISGVYDLGDVLEEM 288
Query: 296 XXXXPFSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
F+ + D+ L S + K+ +++NEEG +
Sbjct: 289 GIADLFTNQANFSRITQDA----QLKSSKVVHKAVLQLNEEGVD 328
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 163/379 (43%), Gaps = 39/379 (10%)
Query: 16 SLTKHVALTEA-KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFAS 74
+L H L EA D +++SP S+ L +++AG++ T +L + L + L A
Sbjct: 18 ALHLHRRLAEAVPDGEVIWSPYSVAXALGVLAAGARATTRTELTTLLGTDPAPLLAAL-- 75
Query: 75 ELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEV 134
D + + P L+ +W+ + ++++F+ + + + DF+T V
Sbjct: 76 --------DRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGV 127
Query: 135 SREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLL 194
VN T G+++E+LP G+V R I NAL+ K W F++ T+ F
Sbjct: 128 RATVNADIADATRGMIRELLPQGAVTPDLRAILTNALWAKARWTTPFEAHLTRAGTFRTP 187
Query: 195 NGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKD--GLPT--L 250
G +VPFM K + G++++ L D+ ++ LP + +PT L
Sbjct: 188 RGPK-RVPFMHRTKTMPYATARGWRMVTL---HAHDE--LAVDVLLPPGTNAAAVPTAPL 241
Query: 251 LEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAE 310
L + S S VE+ +PRF+++ ++ F+ L+
Sbjct: 242 LTALHRRSA-------STSVELA---LPRFELTQPHQLVEVLAEAGVRTLFTAS-ADLSG 290
Query: 311 MVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDK-IDFVADHPFVF 369
+ P LYV ++ ++ + V+E G E ++L + + I F D PF
Sbjct: 291 ISTVP----LYVDTVIHQARLRVDERGAEGAAATAAMMLLAGAMPPRRTIRFSVDRPFHI 346
Query: 370 MIREDMTGLVMFTGHVLNP 388
++R G ++F G + +P
Sbjct: 347 VVRR--RGAILFLGSIADP 363
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 164/390 (42%), Gaps = 48/390 (12%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLS--LISAGSKGPT-LDQLLSFLK--SKSN 66
D +L L + + ++N+ FSP SI LL+ L+ AG T L+ +LS+ K + +
Sbjct: 38 DFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQVLLGAGENTKTNLESILSYPKDFTCVH 97
Query: 67 DQLNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
L F ++ V V + ++ L++++TF +Y ++ +
Sbjct: 98 QALKGFTTKGVTSV---------------SQIFHSPDLAIRDTFVNASRTLYSSSPRVLS 142
Query: 127 FQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKT 186
+ A +N W K TN + +L S+ + TRL+ NA+Y W TFD KT
Sbjct: 143 NNSDAN--LELINTWVAKNTNNKISRLL--DSLPSDTRLVLLNAIYLSAKWKTTFDPKKT 198
Query: 187 KDYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDG 246
+ FH N IKVP M SKK D + L Q + S+ +P
Sbjct: 199 RMEPFHFKN-SVIKVPMMNSKKYPVAHFID--QTLKAKVGQLQLSHNLSLVILVPQNLKH 255
Query: 247 LPTLLEKMGSESKFLDHHLPSQRVEVGDFR-----IPRFKISFGIE-VSXXXXXXXXXXP 300
+E+ S S F +++E+ F+ +PR K++ + +S
Sbjct: 256 RLEDMEQALSPSVF---KAIMEKLEMSKFQPTLLTLPRIKVTTSQDMLSIMEKLEFFDFS 312
Query: 301 FSGEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKID 360
+ GL E D L VS++ ++ +E+ E G E +V R++++
Sbjct: 313 YDLNLCGLTEDPD------LQVSAMQHQTVLELTETGVEAAAASAISVA-RTLLV----- 360
Query: 361 FVADHPFVFMIREDMTGLVMFTGHVLNPLA 390
F PF+FM+ + +F G V +P A
Sbjct: 361 FEVQQPFLFMLWDQQHKFPVFMGRVYDPRA 390
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 54/377 (14%)
Query: 29 SNLVFSPSSIHVLLSLISAGS--KGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
+N++ SP S+ LS +S G+ + ++ + S+ ++ EL+ V A
Sbjct: 56 TNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQK- 114
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKA------ASNQVDFQTKAAEVSREVNM 140
L A+ + ++ L +K++F ++ Y + ++D Q E+N
Sbjct: 115 ----NLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQ--------EINN 162
Query: 141 WAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIK 200
W + + G K + + ++ +FKG W FDS KT DF+L +++
Sbjct: 163 WVQAQMKG--KLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVR 220
Query: 201 VPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSE 257
VP M+ K D K+ LP S+ FFLP TL+E+ +
Sbjct: 221 VPMMSDPKAVLRYGLDSDLSCKIAQLPLTGS-----MSIIFFLPLKVTQNLTLIEESLT- 274
Query: 258 SKFLDHHLPSQRVEV-GDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSP- 315
S+F+ H + + V +P+ K+S+ EV+ S + L + DSP
Sbjct: 275 SEFI-HDIDRELKTVQAVLTVPKLKLSYEGEVTK-----------SLQEMKLQSLFDSPD 322
Query: 316 ----VGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPFVFMI 371
GK + ++ + ++ E NE+G + L+ L+ +D+ + PF+F++
Sbjct: 323 FSKITGKPIKLTQVEHRAGFEWNEDGA----GTTPSPGLQPAHLTFPLDYHLNQPFIFVL 378
Query: 372 REDMTGLVMFTGHVLNP 388
R+ TG ++F G +L+P
Sbjct: 379 RDTDTGALLFIGKILDP 395
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 36/326 (11%)
Query: 16 SLTKHVALTEA-KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFAS 74
+L H L EA D +++SP S+ L +++AG++ T +L + L + L A
Sbjct: 14 ALHLHRRLAEAVPDGEVIWSPYSVACALGVLAAGARATTRTELTTLLGTDPAPLLAAL-- 71
Query: 75 ELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEV 134
D + + P L+ +W+ + ++++F+ + + + DF+T V
Sbjct: 72 --------DRAVTDSPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGV 123
Query: 135 SREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLL 194
VN T G+++E+LP G+V R I NAL+ K W F++ T++ F
Sbjct: 124 RATVNADIADATRGMIRELLPQGAVTPDLRAILTNALWAKARWTTPFEAHLTREGTFRTP 183
Query: 195 NGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKD--GLPT--L 250
G +VPFM K + G++++ L D+ ++ LP + +PT L
Sbjct: 184 RGPK-RVPFMHRTKTMPYATARGWRMVTL---HAHDE--LAVDVLLPPGTNAAAVPTAPL 237
Query: 251 LEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAE 310
L + S S VE+ +PRF+++ ++ F+ L+
Sbjct: 238 LTALHRRSA-------STSVELA---LPRFELTQPHQLVEVLAEAGVRTLFTA-SADLSG 286
Query: 311 MVDSPVGKNLYVSSIFQKSFIEVNEE 336
+ P LYV ++ ++ + V+E
Sbjct: 287 ISTVP----LYVDTVIHQARLRVDER 308
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 46/320 (14%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
K N+ SP SI +L+++ G+ G T +QL +++ +++ + +
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEADKNKDDIS------------- 58
Query: 87 SGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKET 146
N V+ S K++F + + + ++ + D +T A +++ V+++ E +
Sbjct: 59 -----FKSMNKVYGRYSAVFKDSFLRKIGDNFQTV-DFTDCRTVDA-INKCVDIFTEGKI 111
Query: 147 NGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTS 206
N L+ E L P T L+ +A+YFK W F+ T DY F++ + V M+
Sbjct: 112 NPLLDEPLSP-----DTCLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSM 166
Query: 207 KKNQFVSA-----FDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSES--K 259
F A F F ++ LPY SM LPD DGL ++ + + + K
Sbjct: 167 YGEAFNHASVKESFGNFSIIELPYVGDT-----SMVVILPDNIDGLESIEQNLTDTNFKK 221
Query: 260 FLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPVGKN 319
+ D S D IP+FK++ + F G G + M +S V
Sbjct: 222 WCD----SMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVF-GSTGDYSNMCNSDVS-- 274
Query: 320 LYVSSIFQKSFIEVNEEGTE 339
V ++ K++I+VNEE TE
Sbjct: 275 --VDAMIHKTYIDVNEEYTE 292
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 137/323 (42%), Gaps = 52/323 (16%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQLNAFASELVAVVFADGSP 86
K N+ SP SI +L+++ G+ G T +QL +++ +++ + +
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEADKNKDDIS------------- 58
Query: 87 SGGPRLSVANGVWIDESLSLKNTF-KQVVDNVYKAASNQVDFQTKAA--EVSREVNMWAE 143
N V+ S K++F +++ DN VDF +++ V+++ E
Sbjct: 59 -----FKSMNKVYGRYSAVFKDSFLRKIGDNF-----QTVDFTDSRTVDAINKSVDIFTE 108
Query: 144 KETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPF 203
+ N L+ E L P T L+ +A+YFK W F+ T DY F++ + V
Sbjct: 109 GKINPLLDEPLSP-----DTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSM 163
Query: 204 MTSKKNQFVSA-----FDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLPTLLEKMGSES 258
M+ F A F F ++ LPY SM LPD DGL ++ + + +
Sbjct: 164 MSMYGEAFNHASVKESFGNFSIIELPYVGDT-----SMVVILPDNIDGLESIEQNLTDTN 218
Query: 259 --KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGGLAEMVDSPV 316
K+ D S D IP+FK++ + F G G + M +S V
Sbjct: 219 FKKWSD----SMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVF-GSTGDYSNMSNSDV 273
Query: 317 GKNLYVSSIFQKSFIEVNEEGTE 339
V ++ K++I+VNEE TE
Sbjct: 274 S----VDAMIHKTYIDVNEEYTE 292
>pdb|4AU3|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 165/391 (42%), Gaps = 46/391 (11%)
Query: 13 VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKS--NDQLN 70
+A SL + A +A + N++ SP + L L+S G K T Q + L ++ +++++
Sbjct: 16 LAFSLYQAXAKDQAVE-NILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEVH 74
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A EL+ + S + + + ++ S+S F + Y ++++F+ K
Sbjct: 75 AGLGELLRSL--SNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDK 132
Query: 131 AAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYD 190
+ + + +N WA + T+G + EV V+ + + NA +FK W+E F +
Sbjct: 133 RSAL-QSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAXFFKPHWDEKFHHKXVDNRG 189
Query: 191 FHLLNGGSIKVP--FMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLP 248
F + ++ V T N + + +++ P + S+ P + L
Sbjct: 190 FXVTRSYTVGVTXXHRTGLYNYYDDEKEKLQIVEXPLAH----KLSSLIILXPHHVEPLE 245
Query: 249 TLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFG---IEVSXXXXXXXXXXPFSGEG 305
LEK+ ++ + ++ G + IS +EV+ G
Sbjct: 246 R-LEKLLTKEQL--------KIWXGKXQKKAVAISLPKGVVEVTHDLQKHLA-------G 289
Query: 306 GGLAEMVDSPVG--------KNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSD 357
GL E +D K+LY++S+F + E + EG LRS L
Sbjct: 290 LGLTEAIDKNKADLSRXSGKKDLYLASVFHATAFEWDTEGNPFDQDIYGREELRSPKL-- 347
Query: 358 KIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
F ADHPF+F++R+ +G ++F G ++ P
Sbjct: 348 ---FYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 166/398 (41%), Gaps = 54/398 (13%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ--- 68
D A +L + + E D N+ FSP SI L ++S G+ T +++ L D
Sbjct: 12 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 70
Query: 69 --LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+ F + ++ F P L + N ++I + L F V +Y+ D
Sbjct: 71 EIQHGFQHLICSLNF----PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTD 126
Query: 127 FQTKAA---EVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
F +A E++ V M + + GL++++ P +T ++ N ++FK W FD
Sbjct: 127 FSNISAAKQEINSHVEMQTKGKVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDP 180
Query: 184 SKTKDYDFHLLN-GGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFF 239
SKT+D L++ +++VP M + Q+ D VL + Y K ++ F
Sbjct: 181 SKTEDSSSFLIDKTTTVQVPMM-HQMEQYYHLVDMELNCTVLQMDY----SKNALAL-FV 234
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP K+G +E S + Q+ V D +P+F IS ++
Sbjct: 235 LP--KEGQMESVEAAMSSKTLKKWNRLLQKGWV-DLFVPKFSISATYDLGATLLKMGIQH 291
Query: 300 PFS--GEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSD 357
+S + GL E L +S+ K+ + + E+GTE + + LSD
Sbjct: 292 AYSENADFSGLTE------DNGLKLSNAAHKAVLHIGEKGTE-------AAAVPEVELSD 338
Query: 358 KIDFVADHP-------FVFMIREDMTGLVMFTGHVLNP 388
+ + HP F+ +I E T ++F G V+NP
Sbjct: 339 QPENTFLHPIIQIDRSFMLLILERSTRSILFLGKVVNP 376
>pdb|4AU3|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 165/391 (42%), Gaps = 46/391 (11%)
Query: 13 VALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKS--NDQLN 70
+A SL + A +A + N++ SP + L L+S G K T Q + L ++ +++++
Sbjct: 16 LAFSLYQAXAKDQAVE-NILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEVH 74
Query: 71 AFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQTK 130
A EL+ + S + + + ++ S+S F + Y ++++F+ K
Sbjct: 75 AGLGELLRSL--SNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDK 132
Query: 131 AAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYD 190
+ + + +N WA + T+G + EV V+ + + NA +FK W+E F +
Sbjct: 133 RSAL-QSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAXFFKPHWDEKFHHKXVDNRG 189
Query: 191 FHLLNGGSIKVP--FMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLP 248
F + ++ V T N + + +++ P + S+ P + L
Sbjct: 190 FXVTRSYTVGVTXXHRTGLYNYYDDEKEKLQIVEXPLAH----KLSSLIILXPHHVEPLE 245
Query: 249 TLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFG---IEVSXXXXXXXXXXPFSGEG 305
LEK+ ++ + ++ G + IS +EV+ G
Sbjct: 246 R-LEKLLTKEQL--------KIWXGKXQKKAVAISLPKGVVEVTHDLQKHLA-------G 289
Query: 306 GGLAEMVDSPVG--------KNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSD 357
GL E +D K+LY++S+F + E + EG LRS L
Sbjct: 290 LGLTEAIDKNKSDLSRXSGKKDLYLASVFHATAFEWDTEGNPFDQDIYGREELRSPKL-- 347
Query: 358 KIDFVADHPFVFMIREDMTGLVMFTGHVLNP 388
F ADHPF+F++R+ +G ++F G ++ P
Sbjct: 348 ---FYADHPFIFLVRDTQSGSLLFIGRLVRP 375
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 148/356 (41%), Gaps = 40/356 (11%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ--- 68
D A +L + + E D N+ FSP SI L ++S G+ T +++ L D
Sbjct: 17 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 75
Query: 69 --LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+ F + ++ F P L + N ++I + L F V +Y+ D
Sbjct: 76 EIQHGFQHLICSLNF----PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTD 131
Query: 127 FQTKAA---EVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
F +A E++ V M + + GL++++ P +T ++ N ++FK W FD
Sbjct: 132 FSNISAAKQEINSHVEMQTKGKVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDP 185
Query: 184 SKTKDYDFHLLN-GGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFF 239
SKT+D L++ +++VP M + +Q+ D VL + Y K ++ F
Sbjct: 186 SKTEDSSSFLIDKTTTVQVPMM-HQMDQYYHLVDMELNCTVLQMDY----SKNALAL-FV 239
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP K+G +E S + Q+ V D +P+F IS ++
Sbjct: 240 LP--KEGQMESVEAAMSSKTLKKWNRLLQKGWV-DLFVPKFSISATYDLGATLLKMGIQH 296
Query: 300 PFS--GEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSI 353
+S + GL E L +S+ K+ + + E+GTE + RSI
Sbjct: 297 AYSENADFSGLTE------DNGLKLSNAAHKAVLHIGEKGTEAAGAMFLEAIPRSI 346
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/381 (20%), Positives = 162/381 (42%), Gaps = 29/381 (7%)
Query: 12 DVALSLTKH-VALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSF-LKSKSNDQL 69
D A +L + VAL D N + SP SI + L+++S GS Q L F L S ++
Sbjct: 15 DFAFNLYQRLVALN--PDKNTLISPVSISMALAMVSLGSAQTQSLQSLGFNLTETSEAEI 72
Query: 70 NAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVDFQ- 128
+ L ++ G +++ N +++ + L LK++F V Y++ + +DF+
Sbjct: 73 HQSFQYLNYLL---KQSDTGLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFED 129
Query: 129 -TKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTK 187
TKA S+++N + +T G ++ V +D+ I N ++ +G W F T+
Sbjct: 130 WTKA---SQQINQHVKDKTQGKIEHVF--SDLDSPASFILVNYIFLRGIWELPFSPENTR 184
Query: 188 DYDFHLLNGGSIKVPFMTSKKNQFVSAFDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGL 247
+ DF++ ++KVP M + + F V Q + + +F LPD + +
Sbjct: 185 EEDFYVNETSTVKVPMMVQSGS--IGYFRD-SVFPCQLIQMDYVGNGTAFFILPD-QGQM 240
Query: 248 PTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGGG 307
T++ + ++ +D + IP+F +S ++ + +
Sbjct: 241 DTVIAALSRDT--IDRWGKLMTPRQVNLYIPKFSMSDTYDLKDVLEDLNIKDLLTNQSDF 298
Query: 308 LAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSIVLSDKIDFVADHPF 367
D P+ ++ K+ ++++E + LR S+ +D + PF
Sbjct: 299 SGNTKDVPL-----TLTMVHKAMLQLDEGNVLPNSTNGAPLHLR----SEPLDIKFNKPF 349
Query: 368 VFMIREDMTGLVMFTGHVLNP 388
+ ++ + T + V+NP
Sbjct: 350 ILLLFDKFTWSSLMMSQVVNP 370
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 134 VSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHL 193
+++ V+++ E + N L+ E L P T L+ +A+YFK W F+ T DY F++
Sbjct: 44 INKSVDIFTEGKINPLLDEPLSP-----DTSLLAISAVYFKAKWLMPFEKEFTSDYPFYV 98
Query: 194 LNGGSIKVPFMTSKKNQFVSA-----FDGFKVLGLPYKQGEDKRRFSMYFFLPDAKDGLP 248
+ V M+ F A F F ++ LPY SM LPD DGL
Sbjct: 99 SPTEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDT-----SMVVILPDNIDGLE 153
Query: 249 TLLEKMGSES--KFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXXPFSGEGG 306
++ + + + K+ D S D IP+FK++ + F G G
Sbjct: 154 SIEQNLTDTNFKKWSD----SMDAMFIDVHIPKFKVTGSYNLVDALVKLGLTEVF-GSTG 208
Query: 307 GLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
+ M +S V V ++ K++I+VNEE TE
Sbjct: 209 DYSNMSNSDVS----VDAMIHKTYIDVNEEYTE 237
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 147/356 (41%), Gaps = 40/356 (11%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ--- 68
D A +L + + E D N+ FSP SI L ++S G+ T +++ L D
Sbjct: 17 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 75
Query: 69 --LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+ F + ++ F P L + N ++I + L F V +Y+ D
Sbjct: 76 EIQHGFQHLICSLNF----PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTD 131
Query: 127 FQTKAA---EVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
F +A E++ V M + + GL++++ P +T ++ N ++FK W FD
Sbjct: 132 FSNISAAKQEINSHVEMQTKGKVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDP 185
Query: 184 SKTKDYDFHLLN-GGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFF 239
SKT+D L++ +++VP M + Q+ D VL + Y K ++ F
Sbjct: 186 SKTEDSSSFLIDKTTTVQVPMM-HQMEQYYHLVDMELNCTVLQMDY----SKNALAL-FV 239
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP K+G +E S + Q+ V D +P+F IS ++
Sbjct: 240 LP--KEGQMESVEAAMSSKTLKKWNRLLQKGWV-DLFVPKFSISATYDLGATLLKMGIQH 296
Query: 300 PFS--GEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTEXXXXXXXTVVLRSI 353
+S + GL E L +S+ K+ + + E+GTE + RSI
Sbjct: 297 AYSENADFSGLTE------DNGLKLSNAAHKAVLHIGEKGTEAAGAMFLEAIPRSI 346
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 143/342 (41%), Gaps = 40/342 (11%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ--- 68
D A +L + + E D N+ FSP SI L ++S G+ T +++ L D
Sbjct: 16 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 74
Query: 69 --LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+ F + ++ F P L + N ++I + L F V +Y+ D
Sbjct: 75 EIQHGFQHLICSLNF----PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTD 130
Query: 127 FQTKAA---EVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
F +A E++ V M + + GL++++ P +T ++ N ++FK W FD
Sbjct: 131 FSNISAAKQEINSHVEMQTKGKVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDP 184
Query: 184 SKTKDYDFHLLN-GGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFF 239
SKT+D L++ +++VP M + Q+ D VL + Y K ++ F
Sbjct: 185 SKTEDSSSFLIDKTTTVQVPMM-HQMEQYYHLVDMELNCTVLQMDY----SKNALAL-FV 238
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP K+G +E S + Q+ V D +P+F IS ++
Sbjct: 239 LP--KEGQMESVEAAMSSKTLKKWNRLLQKGWV-DLFVPKFSISATYDLGATLLKMGIQH 295
Query: 300 PFS--GEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
+S + GL E L +S+ K+ + + E+GTE
Sbjct: 296 AYSENADFSGLTE------DNGLKLSNAAHKAVLHIGEKGTE 331
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 143/342 (41%), Gaps = 40/342 (11%)
Query: 12 DVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSNDQ--- 68
D A +L + + E D N+ FSP SI L ++S G+ T +++ L D
Sbjct: 11 DFAFNLYRRFTV-ETPDKNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV 69
Query: 69 --LNAFASELVAVVFADGSPSGGPRLSVANGVWIDESLSLKNTFKQVVDNVYKAASNQVD 126
+ F + ++ F P L + N ++I + L F V +Y+ D
Sbjct: 70 EIQHGFQHLICSLNF----PKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTD 125
Query: 127 FQTKAA---EVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDS 183
F +A E++ V M + + GL++++ P +T ++ N ++FK W FD
Sbjct: 126 FSNISAAKQEINSHVEMQTKGKVVGLIQDLKP------NTIMVLVNYIHFKAQWANPFDP 179
Query: 184 SKTKDYDFHLLN-GGSIKVPFMTSKKNQFVSAFD---GFKVLGLPYKQGEDKRRFSMYFF 239
SKT+D L++ +++VP M + Q+ D VL + Y K ++ F
Sbjct: 180 SKTEDSSSFLIDKTTTVQVPMM-HQMEQYYHLVDMELNCTVLQMDY----SKNALAL-FV 233
Query: 240 LPDAKDGLPTLLEKMGSESKFLDHHLPSQRVEVGDFRIPRFKISFGIEVSXXXXXXXXXX 299
LP K+G +E S + Q+ V D +P+F IS ++
Sbjct: 234 LP--KEGQMESVEAAMSSKTLKKWNRLLQKGWV-DLFVPKFSISATYDLGATLLKMGIQH 290
Query: 300 PFS--GEGGGLAEMVDSPVGKNLYVSSIFQKSFIEVNEEGTE 339
+S + GL E L +S+ K+ + + E+GTE
Sbjct: 291 AYSENADFSGLTE------DNGLKLSNAAHKAVLHIGEKGTE 326
>pdb|1JJO|E Chain E, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|F Chain F, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 33
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 362 VADHPFVFMIREDMTGLVMFTGHVLNP 388
+ DHPF+++IR +G+++F G V+NP
Sbjct: 5 IVDHPFLYLIRNRKSGIILFMGRVMNP 31
>pdb|3F02|C Chain C, Cleaved Human Neuroserpin
pdb|3F02|D Chain D, Cleaved Human Neuroserpin
Length = 48
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 362 VADHPFVFMIREDMTGLVMFTGHVLNP 388
+ DHPF F+IR TG ++F G V++P
Sbjct: 9 IVDHPFFFLIRNRRTGTILFMGRVMHP 35
>pdb|9PAI|B Chain B, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 33
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 360 DFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+ + D PF+F++R + TG V+F G V+ P
Sbjct: 5 EIIMDRPFLFVVRHNPTGTVLFMGQVMEP 33
>pdb|4AFX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|B Chain B, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 36
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 364 DHPFVFMIREDMTGLVMFTGHVLNP 388
D PF FMI E+ +G+++F G V+NP
Sbjct: 9 DRPFHFMIYEETSGMLLFLGRVVNP 33
>pdb|1F0C|B Chain B, Structure Of The Viral Serpin Crma
Length = 36
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 360 DFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+F ADHPF+++IR + G ++F G +P
Sbjct: 6 EFCADHPFIYVIRH-VDGKILFVGRYCSP 33
>pdb|1HLE|B Chain B, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 31
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 360 DFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+F ADHPF+F IR + + ++F G +P
Sbjct: 3 NFNADHPFIFFIRHNPSANILFLGRFSSP 31
>pdb|3TEJ|A Chain A, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
pdb|3TEJ|B Chain B, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
Length = 329
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 105 SLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVL 154
SL T Q + +A QV F E W EKE NGL EVL
Sbjct: 174 SLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVL 223
>pdb|2ROQ|A Chain A, Solution Structure Of The Thiolation-Thioesterase
Di-Domain Of Enterobactin Synthetase Component F
Length = 343
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 105 SLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVL 154
SL T Q + +A QV F E W EKE NGL EVL
Sbjct: 180 SLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVL 229
>pdb|1C8O|B Chain B, 2.9 A Structure Of Cleaved Viral Serpin Crma
pdb|1M93|C Chain C, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 41
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 360 DFVADHPFVFMIREDMTGLVMFTGHVLNP 388
+F ADHPF+++IR + G ++F G +P
Sbjct: 11 EFSADHPFIYVIRH-VDGKILFVGRYSSP 38
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 63 SKSNDQLNAFASELVAVVFADGSPSG----GPRLSVANGVWIDESLSLKNTFKQVVDNVY 118
++ D+ A E F G P G G R S+ E + + + + N
Sbjct: 127 ARYQDRPGFXAYEWARARFFQGHPLGNSVLGTRESIT--ALTREGXAAYHRRRYLPKNXV 184
Query: 119 KAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVD----NSTRLIFANALYFK 174
AA+ +VDF AE R W E E + P V+ R ++ AL+
Sbjct: 185 LAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFPG 244
Query: 175 GAWNE 179
A+ E
Sbjct: 245 VAYQE 249
>pdb|2WXX|A Chain A, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|B Chain B, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXX|D Chain D, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form
pdb|2WXY|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Reduced
Form
pdb|2WY0|C Chain C, Crystal Structure Of Mouse Angiotensinogen In The Oxidised
Form With Space Group P6122
Length = 453
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 19/211 (9%)
Query: 29 SNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFL-----------KSKSNDQLNAFASELV 77
S + SP ++ L GS PT QL + L + + L A +
Sbjct: 96 SGAILSPPALFGTLVSFYLGSLDPTASQLQTLLDVPVKEGDCTSRLDGHKVLAALRAVQG 155
Query: 78 AVVFADGSPSGGPRL-SVANGVWIDESLSLKNTFKQVVDNVYKAA-SNQVDFQTKAAEVS 135
+V GS S P L S+ G++ LK++F Q + A +D T +
Sbjct: 156 LLVTQGGSSSQTPLLQSIVVGLFTAPGFRLKHSFVQSLALFTPALFPRSLDLSTDPVLAT 215
Query: 136 REVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLN 195
++N + + T K LP V + L+F ++F+G S ++F + N
Sbjct: 216 EKINRFIKAVTGW--KMNLPLEGVSTDSTLLFNTYVHFQGTMRGF--SQLPGVHEFWVDN 271
Query: 196 GGSIKVPFMTSKKN--QFVSAFDGFKVLGLP 224
S+ VP ++ N + A + F V +P
Sbjct: 272 SISVSVPMISGTGNFQHWSDAQNNFSVTCVP 302
>pdb|1VIV|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VIV|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 197
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 145 ETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGS 198
++NG K + P GS+ T L+F +A+ K + DS + +L GGS
Sbjct: 138 QSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLEEGGS 191
>pdb|1M93|A Chain A, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 55
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 27 KDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSN 66
K N+ SP SI +L+++ G+ G T +QL +++ +++
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSKYVEKEAD 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,876,176
Number of Sequences: 62578
Number of extensions: 430431
Number of successful extensions: 1444
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 140
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)