BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016312
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 325 SDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384
S EE + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 385 SMRIYFS 391
+I+ S
Sbjct: 68 KQKIFMS 74
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 327 EEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386
EE + + + C VC+ + F PCGHLV C+ CA S+ KCP+CR T++ ++
Sbjct: 15 EEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR-----KCPICRSTIKGTV 69
Query: 387 RIYFS 391
R + S
Sbjct: 70 RTFLS 74
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 325 SDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384
S EE + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 14 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 68
Query: 385 SMRIYFS 391
+I+ S
Sbjct: 69 KQKIFMS 75
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 307 MSRQLTETPSDDADSQIGSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAIS 366
+ + + P++D S EE + + + C VC+ + F PCGHLV C+ CA S
Sbjct: 268 VDKNMKYIPTEDVSGL--SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPS 325
Query: 367 VEREASPKCPVCRMTVRSSMRIYFS 391
+ KCP+CR ++ ++R + S
Sbjct: 326 LR-----KCPICRGIIKGTVRTFLS 345
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 325 SDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384
S EE + + +LC +C+ R F PCGHLV C++CA EA KCP+C +
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA-----EAVDKCPMCYTVITF 67
Query: 385 SMRIYFS 391
+I S
Sbjct: 68 KQKILMS 74
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 327 EEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386
+E + + LC+VC S F PCGH VCC CA ++ CPVCR V
Sbjct: 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQ 63
Query: 387 RIYF 390
+Y
Sbjct: 64 HVYL 67
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 324 GSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPK---CPVCRM 380
GS E + + + C VCL R F PCGHLVC E +P CP+CR
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVC---------AECAPGLQLCPICRA 51
Query: 381 TVRSSMRIYFS 391
VRS +R + S
Sbjct: 52 PVRSRVRTFLS 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385
QLC +C + PCGHL+C C S + CP CR ++ +
Sbjct: 25 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGT 72
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385
QLC +C + PCGHL+C C S + CP CR ++ +
Sbjct: 28 QLCKICAENDKDVKIEPCGHLMCT-SCLTSWQESEGQGCPFCRCEIKGT 75
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 335 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 335 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388
QLC +C + PCGHL+ C C S + CP CR ++ + I
Sbjct: 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385
QLC +C + PCGHL+C C + + CP CR ++ +
Sbjct: 27 QLCKICAENDKDVKIEPCGHLMCT-SCLTAWQESDGQGCPFCRCEIKGT 74
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 324 GSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 377
G D E + C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 6 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388
QLC +C + PCGHL+ C C + + CP CR ++ + I
Sbjct: 339 QLCKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIKGTEPI 389
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 339 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 377
C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 9 CPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 46
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 324 GSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 377
G D E + C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 13 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 65
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 339 CVVCLTRRRISAFNPC------GHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390
CV+C R + N C GHL+ C CA +++ P CPVCR ++ + YF
Sbjct: 10 CVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKRNKP-CPVCRQPIQMIVLTYF 62
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 339 CVVCLTRRRISAFNPC------GHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390
CV+C R + N C GHL+ C CA +++ P CPVCR ++ + YF
Sbjct: 11 CVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKRNKP-CPVCRQPIQMIVLTYF 63
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|B Chain B, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|D Chain D, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|F Chain F, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|H Chain H, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 152
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 72 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 131
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 132 NILQYASTR 140
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 331 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 390
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 391 NILQYASTR 399
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 267 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 326
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 327 NILQYASTR 335
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 272 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 331
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 332 NILQYASTR 340
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 267 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 326
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 327 NILQYASTR 335
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 576 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 635
Query: 287 GILGYAIVR 295
IL YA R
Sbjct: 636 NILQYASTR 644
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 324 GSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPV 377
G D E + C +CL R + PCGH C+ C I R+A KCPV
Sbjct: 6 GYDVEFDPPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 58
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 231 SAVGICNFKNGIPEIK----SCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSI 286
S GIC KN + K + KDLP+ + E K ++ + S I+F++ + + L
Sbjct: 268 SMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKT 327
Query: 287 GILGYA 292
IL YA
Sbjct: 328 NILQYA 333
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 339 CVVCLTRRRISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391
C +C R R GHLV C CA +++ A CP+C+ ++ ++++ +
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQLVIKVFIA 63
>pdb|4ECI|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECI|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
pdb|4ECJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
Length = 244
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 254 FLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIV------RNWNRWKDRQQRM 307
+L+EKT M D+ RS+++ W +G + + G A V DR Q
Sbjct: 76 YLAEKTGQLMPADVKGRSRVIQWLMFQMGGVG-PMQGQANVFFRYFPEKLQGAIDRYQHE 134
Query: 308 SRQLTETPSDDADSQIGSDEEVAGD 332
+R+L E D ++G E +AGD
Sbjct: 135 TRRLYEV----LDGRLGEAEYLAGD 155
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 326 DEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCR 379
DE+ I + C +C + R + P +CC C E +CP CR
Sbjct: 12 DEQSVESIAEVFRCFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 237 NFKNGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKIL---------FWSGIVLGSLSIG 287
+ N PEIKSC + F+++ TK+Q N + +L FW ++L SIG
Sbjct: 187 DLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLL--FSIG 244
Query: 288 ILGYAIVRNWNR 299
L + ++N+
Sbjct: 245 TLAIFLTGHFNQ 256
>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
Thaliana
Length = 150
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 296 NWNRWKDRQQRMSRQLTETPSDDADSQIGSDEEVAGDIPDGQLCVVCLTRRR 347
+WN+W D + ++ +ET SDD + + D E + D DG L + L + R
Sbjct: 102 DWNKWCDEDEEVN---SETASDDESAFVNQDSESSDD--DGLLYLPDLEKAR 148
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 237 NFKNGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKIL---------FWSGIV---LGSL 284
+ N PEIKSC + F+++ TK+Q N + +L FW ++ LG+L
Sbjct: 404 DLANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTL 463
Query: 285 SIGILGY 291
+I + G+
Sbjct: 464 AIFLTGH 470
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 338 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASP--KCPVCRMTVRSS 385
+C +CL + CGH C + C + + KCP+C+ +VR +
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLK-CITQIGETSCGFFKCPLCKTSVRKN 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,002,756
Number of Sequences: 62578
Number of extensions: 448644
Number of successful extensions: 1003
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 46
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)