Query 016312
Match_columns 391
No_of_seqs 276 out of 1274
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 6.6E-43 1.4E-47 336.4 13.2 331 13-391 6-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 99.9 6.8E-27 1.5E-31 208.5 14.1 147 124-284 4-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 1.8E-14 3.8E-19 102.5 -2.0 55 337-391 8-62 (62)
4 PF13920 zf-C3HC4_3: Zinc fing 99.3 2.4E-12 5.3E-17 92.4 3.4 49 336-385 2-50 (50)
5 KOG4265 Predicted E3 ubiquitin 99.2 4.8E-12 1E-16 123.1 3.8 57 333-390 287-343 (349)
6 KOG4275 Predicted E3 ubiquitin 99.1 1.3E-11 2.8E-16 116.5 -1.5 51 336-391 300-350 (350)
7 PLN03208 E3 ubiquitin-protein 98.9 1.8E-09 3.9E-14 97.9 4.9 58 332-390 14-88 (193)
8 KOG0317 Predicted E3 ubiquitin 98.8 2.6E-09 5.6E-14 101.4 3.6 51 336-388 239-289 (293)
9 PF15227 zf-C3HC4_4: zinc fing 98.7 9.5E-09 2.1E-13 71.1 3.2 39 339-378 1-42 (42)
10 KOG1571 Predicted E3 ubiquitin 98.7 5.2E-08 1.1E-12 95.3 8.5 286 3-300 2-294 (355)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.2E-08 2.7E-13 69.3 2.7 38 339-378 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 98.7 1.3E-08 2.8E-13 94.0 3.6 52 337-389 48-103 (230)
13 PHA02929 N1R/p28-like protein; 98.6 4.9E-08 1.1E-12 92.0 4.0 52 335-388 173-232 (238)
14 KOG0320 Predicted E3 ubiquitin 98.5 4.6E-08 9.9E-13 86.9 2.0 52 337-390 132-187 (187)
15 KOG4628 Predicted E3 ubiquitin 98.5 1E-07 2.2E-12 93.9 3.5 47 337-384 230-279 (348)
16 PF13639 zf-RING_2: Ring finge 98.4 9.7E-08 2.1E-12 66.5 2.3 40 338-379 2-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 98.4 2.1E-07 4.5E-12 63.6 2.8 39 339-378 1-41 (41)
18 KOG2164 Predicted E3 ubiquitin 98.4 2.4E-07 5.1E-12 94.3 3.3 54 336-390 186-245 (513)
19 cd00162 RING RING-finger (Real 98.3 3.8E-07 8.2E-12 62.4 3.1 44 338-382 1-45 (45)
20 PHA02926 zinc finger-like prot 98.3 2.4E-07 5.2E-12 85.2 2.6 53 334-387 168-234 (242)
21 PF14634 zf-RING_5: zinc-RING 98.3 3.8E-07 8.2E-12 63.6 2.7 41 338-380 1-44 (44)
22 smart00184 RING Ring finger. E 98.3 5.9E-07 1.3E-11 59.3 2.7 39 339-378 1-39 (39)
23 smart00504 Ubox Modified RING 98.3 6.7E-07 1.5E-11 66.7 3.2 46 337-384 2-47 (63)
24 TIGR00599 rad18 DNA repair pro 98.2 7.6E-07 1.7E-11 89.7 2.9 54 329-384 19-72 (397)
25 COG5574 PEX10 RING-finger-cont 98.1 1E-06 2.2E-11 82.9 2.0 48 336-384 215-263 (271)
26 PF13445 zf-RING_UBOX: RING-ty 98.1 1.8E-06 3.8E-11 60.0 2.0 36 339-376 1-43 (43)
27 KOG0978 E3 ubiquitin ligase in 98.0 9E-07 2E-11 94.0 -0.4 59 331-390 638-698 (698)
28 KOG1100 Predicted E3 ubiquitin 98.0 2.2E-06 4.7E-11 79.6 1.2 48 338-390 160-207 (207)
29 KOG1785 Tyrosine kinase negati 98.0 2.5E-06 5.3E-11 84.2 1.4 51 337-388 370-421 (563)
30 COG5243 HRD1 HRD ubiquitin lig 97.8 1.3E-05 2.7E-10 78.7 3.9 47 334-382 285-344 (491)
31 PF04564 U-box: U-box domain; 97.8 1.6E-05 3.4E-10 61.6 3.6 50 334-384 2-51 (73)
32 KOG2177 Predicted E3 ubiquitin 97.8 5.8E-06 1.3E-10 78.6 1.3 47 332-380 9-55 (386)
33 KOG0287 Postreplication repair 97.8 6.2E-06 1.3E-10 79.9 0.9 52 331-384 18-69 (442)
34 KOG0824 Predicted E3 ubiquitin 97.8 7.7E-06 1.7E-10 78.3 1.3 49 337-386 8-56 (324)
35 COG5432 RAD18 RING-finger-cont 97.8 1.1E-05 2.4E-10 76.7 2.1 52 330-383 19-70 (391)
36 PF12678 zf-rbx1: RING-H2 zinc 97.6 4.9E-05 1.1E-09 58.9 3.5 40 338-379 21-73 (73)
37 COG5540 RING-finger-containing 97.6 3.9E-05 8.4E-10 73.5 2.6 49 334-383 321-372 (374)
38 KOG4692 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 71.3 1.8 49 335-385 421-469 (489)
39 KOG0802 E3 ubiquitin ligase [P 97.1 0.00017 3.6E-09 76.5 1.4 46 335-382 290-340 (543)
40 PF14835 zf-RING_6: zf-RING of 97.1 8E-05 1.7E-09 55.7 -1.0 44 335-382 6-50 (65)
41 COG5236 Uncharacterized conser 97.0 0.00067 1.5E-08 66.3 3.7 52 334-386 59-111 (493)
42 PF12861 zf-Apc11: Anaphase-pr 96.9 0.00083 1.8E-08 53.3 3.0 33 350-383 48-82 (85)
43 TIGR00570 cdk7 CDK-activating 96.8 0.0008 1.7E-08 65.7 3.0 31 353-384 25-55 (309)
44 KOG0311 Predicted E3 ubiquitin 96.7 0.00025 5.3E-09 69.6 -1.7 53 332-385 39-92 (381)
45 PF14447 Prok-RING_4: Prokaryo 96.6 0.00076 1.7E-08 48.9 1.0 46 335-384 6-51 (55)
46 KOG4159 Predicted E3 ubiquitin 96.5 0.0014 2.9E-08 66.6 2.2 51 332-384 80-130 (398)
47 KOG1039 Predicted E3 ubiquitin 96.5 0.0012 2.5E-08 65.7 1.6 52 335-387 160-225 (344)
48 KOG0804 Cytoplasmic Zn-finger 96.5 0.0014 3.1E-08 66.1 2.0 49 330-382 169-221 (493)
49 COG5152 Uncharacterized conser 96.3 0.0017 3.8E-08 58.9 1.5 47 337-385 197-243 (259)
50 PF14570 zf-RING_4: RING/Ubox 96.1 0.0027 5.9E-08 44.9 1.5 43 339-382 1-47 (48)
51 KOG1813 Predicted E3 ubiquitin 96.1 0.002 4.3E-08 62.0 0.7 46 338-385 243-288 (313)
52 KOG0828 Predicted E3 ubiquitin 95.8 0.0036 7.8E-08 63.9 1.2 50 334-384 569-635 (636)
53 KOG3002 Zn finger protein [Gen 95.5 0.0061 1.3E-07 59.7 1.6 45 335-385 47-93 (299)
54 KOG0297 TNF receptor-associate 95.3 0.0081 1.8E-07 61.2 1.7 51 333-385 18-69 (391)
55 KOG2879 Predicted E3 ubiquitin 95.1 0.018 3.9E-07 55.0 3.1 50 334-384 237-288 (298)
56 KOG1002 Nucleotide excision re 94.8 0.0092 2E-07 61.4 0.5 47 334-381 534-584 (791)
57 KOG1001 Helicase-like transcri 94.4 0.016 3.5E-07 62.8 1.2 46 337-384 455-501 (674)
58 PF04641 Rtf2: Rtf2 RING-finge 94.3 0.041 8.9E-07 53.0 3.6 48 334-384 111-162 (260)
59 KOG2660 Locus-specific chromos 94.1 0.014 3.1E-07 57.1 -0.0 54 333-388 12-66 (331)
60 PF07800 DUF1644: Protein of u 94.1 0.062 1.4E-06 47.4 3.9 20 336-355 2-21 (162)
61 KOG0825 PHD Zn-finger protein 94.0 0.016 3.4E-07 62.3 0.1 49 337-387 124-175 (1134)
62 KOG1814 Predicted E3 ubiquitin 93.8 0.029 6.3E-07 56.3 1.7 43 337-380 185-237 (445)
63 KOG0826 Predicted E3 ubiquitin 93.8 0.037 8E-07 54.1 2.2 55 334-390 298-355 (357)
64 COG5222 Uncharacterized conser 92.9 0.11 2.5E-06 50.1 4.0 43 337-380 275-318 (427)
65 PF11789 zf-Nse: Zinc-finger o 92.7 0.082 1.8E-06 38.9 2.2 41 336-377 11-53 (57)
66 COG5175 MOT2 Transcriptional r 92.7 0.055 1.2E-06 53.1 1.5 46 338-384 16-65 (480)
67 PF05290 Baculo_IE-1: Baculovi 92.3 0.081 1.7E-06 45.4 1.9 49 337-386 81-135 (140)
68 KOG2932 E3 ubiquitin ligase in 91.9 0.044 9.4E-07 53.2 -0.2 45 337-385 91-136 (389)
69 KOG1734 Predicted RING-contain 91.6 0.076 1.7E-06 50.6 1.1 49 335-384 223-282 (328)
70 smart00744 RINGv The RING-vari 91.2 0.19 4.1E-06 35.8 2.5 41 338-379 1-49 (49)
71 KOG1101 Apoptosis inhibitor IA 91.1 0.053 1.2E-06 47.7 -0.5 60 242-309 16-80 (147)
72 KOG3039 Uncharacterized conser 90.8 0.19 4.1E-06 47.4 2.8 48 335-384 220-271 (303)
73 KOG2113 Predicted RNA binding 88.7 0.42 9E-06 46.7 3.4 53 333-388 340-392 (394)
74 COG5220 TFB3 Cdk activating ki 87.8 0.24 5.2E-06 46.6 1.1 44 336-380 10-61 (314)
75 COG5219 Uncharacterized conser 87.0 0.25 5.5E-06 54.4 1.0 50 333-383 1466-1523(1525)
76 PF05961 Chordopox_A13L: Chord 86.8 0.91 2E-05 34.3 3.5 31 18-48 3-33 (68)
77 smart00238 BIR Baculoviral inh 86.7 0.13 2.8E-06 39.1 -1.1 57 243-308 4-64 (71)
78 KOG1428 Inhibitor of type V ad 86.4 0.37 8E-06 55.4 1.8 50 335-385 3485-3546(3738)
79 KOG4445 Uncharacterized conser 84.8 0.28 6E-06 47.6 -0.1 46 337-383 116-186 (368)
80 PF10272 Tmpp129: Putative tra 83.3 1.2 2.6E-05 44.8 3.7 24 360-383 316-351 (358)
81 KOG3161 Predicted E3 ubiquitin 82.3 0.55 1.2E-05 49.9 0.8 41 336-381 11-55 (861)
82 PF04710 Pellino: Pellino; In 81.3 0.47 1E-05 47.8 0.0 52 336-389 328-410 (416)
83 KOG3579 Predicted E3 ubiquitin 80.9 0.74 1.6E-05 44.4 1.1 32 337-369 269-304 (352)
84 PF11793 FANCL_C: FANCL C-term 80.9 0.44 9.6E-06 36.5 -0.3 46 337-383 3-66 (70)
85 cd00022 BIR Baculoviral inhibi 80.8 0.37 8.1E-06 36.3 -0.8 57 243-308 2-62 (69)
86 KOG2113 Predicted RNA binding 80.5 0.49 1.1E-05 46.2 -0.2 51 336-386 136-186 (394)
87 PF00653 BIR: Inhibitor of Apo 80.1 0.4 8.7E-06 36.4 -0.7 59 244-308 1-64 (70)
88 PHA03049 IMV membrane protein; 80.0 1.6 3.5E-05 32.8 2.5 32 18-49 3-34 (68)
89 KOG4185 Predicted E3 ubiquitin 79.4 1 2.2E-05 43.8 1.7 34 348-382 21-54 (296)
90 KOG1493 Anaphase-promoting com 79.0 0.64 1.4E-05 36.1 0.1 45 338-383 33-81 (84)
91 PF05883 Baculo_RING: Baculovi 78.6 0.92 2E-05 39.2 0.9 32 337-369 27-67 (134)
92 PHA02825 LAP/PHD finger-like p 77.9 1.8 3.8E-05 38.5 2.5 48 335-383 7-59 (162)
93 KOG3842 Adaptor protein Pellin 76.8 1.9 4.1E-05 42.2 2.6 47 336-384 341-415 (429)
94 KOG2817 Predicted E3 ubiquitin 76.8 1.7 3.7E-05 43.8 2.3 52 337-389 335-393 (394)
95 COG5183 SSM4 Protein involved 74.1 2.4 5.2E-05 46.4 2.7 58 331-389 7-71 (1175)
96 PF10367 Vps39_2: Vacuolar sor 73.4 1.2 2.6E-05 36.2 0.2 32 333-365 75-108 (109)
97 PHA02862 5L protein; Provision 73.3 2.6 5.7E-05 36.8 2.3 51 337-389 3-58 (156)
98 KOG4362 Transcriptional regula 71.6 1 2.3E-05 48.5 -0.6 47 337-384 22-70 (684)
99 PHA03096 p28-like protein; Pro 69.6 2.7 5.8E-05 41.1 1.7 32 337-369 179-218 (284)
100 PF03854 zf-P11: P-11 zinc fin 68.0 3.9 8.4E-05 28.9 1.8 45 338-386 4-49 (50)
101 KOG1941 Acetylcholine receptor 65.8 2.2 4.8E-05 43.0 0.3 49 336-385 365-418 (518)
102 KOG0827 Predicted E3 ubiquitin 65.4 4.1 8.8E-05 41.1 2.1 35 344-379 15-52 (465)
103 KOG3799 Rab3 effector RIM1 and 64.4 2.7 5.9E-05 36.2 0.6 23 332-358 61-84 (169)
104 KOG1940 Zn-finger protein [Gen 64.1 2 4.3E-05 41.7 -0.4 44 339-385 161-208 (276)
105 PF12906 RINGv: RING-variant d 62.8 5.6 0.00012 27.9 1.8 40 339-378 1-47 (47)
106 PF14569 zf-UDP: Zinc-binding 57.2 11 0.00023 29.6 2.6 50 335-384 8-63 (80)
107 KOG3842 Adaptor protein Pellin 57.1 6.6 0.00014 38.6 1.8 41 344-389 312-357 (429)
108 PLN02189 cellulose synthase 56.3 7.6 0.00016 44.1 2.4 50 335-384 33-88 (1040)
109 COG5194 APC11 Component of SCF 54.4 13 0.00029 29.2 2.8 31 351-383 51-81 (88)
110 KOG3970 Predicted E3 ubiquitin 52.3 11 0.00023 35.5 2.3 48 336-384 50-106 (299)
111 KOG3113 Uncharacterized conser 51.6 12 0.00027 35.7 2.6 45 336-384 111-159 (293)
112 COG4306 Uncharacterized protei 50.2 7.1 0.00015 33.3 0.7 24 358-385 29-52 (160)
113 KOG0825 PHD Zn-finger protein 49.5 9.6 0.00021 41.9 1.8 49 336-385 96-156 (1134)
114 PF07191 zinc-ribbons_6: zinc- 48.4 2.9 6.4E-05 32.0 -1.6 42 337-385 2-43 (70)
115 KOG1812 Predicted E3 ubiquitin 48.0 7.7 0.00017 39.6 0.8 33 336-369 146-182 (384)
116 PF02891 zf-MIZ: MIZ/SP-RING z 47.8 14 0.00031 26.2 1.9 43 338-381 4-50 (50)
117 PF04710 Pellino: Pellino; In 47.1 6.3 0.00014 39.9 0.0 40 344-388 299-343 (416)
118 PF10083 DUF2321: Uncharacteri 47.1 10 0.00022 33.6 1.3 23 359-385 30-52 (158)
119 PF14316 DUF4381: Domain of un 46.8 28 0.0006 30.3 4.0 25 42-66 52-80 (146)
120 PF15339 Afaf: Acrosome format 45.3 51 0.0011 29.8 5.3 55 7-63 124-180 (200)
121 KOG3039 Uncharacterized conser 41.8 17 0.00037 34.6 2.0 32 336-368 43-74 (303)
122 KOG0298 DEAD box-containing he 40.5 9.2 0.0002 44.2 -0.0 47 334-382 1151-1198(1394)
123 PF08693 SKG6: Transmembrane a 40.1 12 0.00026 25.5 0.5 19 23-41 21-39 (40)
124 PF01102 Glycophorin_A: Glycop 38.8 32 0.00069 29.4 3.0 13 32-44 83-95 (122)
125 KOG2114 Vacuolar assembly/sort 37.6 7 0.00015 43.2 -1.4 45 337-386 841-886 (933)
126 PHA02681 ORF089 virion membran 35.6 1.1E+02 0.0025 24.2 5.3 24 19-42 5-28 (92)
127 PF08746 zf-RING-like: RING-li 35.6 32 0.0007 23.6 2.1 17 362-378 26-43 (43)
128 KOG3899 Uncharacterized conser 33.3 23 0.0005 34.6 1.4 25 359-383 329-365 (381)
129 KOG2068 MOT2 transcription fac 32.8 27 0.00059 34.6 1.9 47 337-385 250-300 (327)
130 KOG4185 Predicted E3 ubiquitin 32.4 8.5 0.00019 37.4 -1.7 45 336-381 207-265 (296)
131 KOG1815 Predicted E3 ubiquitin 32.2 21 0.00045 37.1 1.0 33 336-369 70-103 (444)
132 PRK00665 petG cytochrome b6-f 32.1 71 0.0015 21.2 3.1 23 18-40 6-31 (37)
133 CHL00008 petG cytochrome b6/f 30.6 80 0.0017 21.0 3.1 23 18-40 6-31 (37)
134 COG3763 Uncharacterized protei 30.6 2E+02 0.0042 22.2 5.7 27 39-65 24-50 (71)
135 PF02529 PetG: Cytochrome B6-F 30.4 73 0.0016 21.3 2.9 23 18-40 6-31 (37)
136 PLN02436 cellulose synthase A 29.2 40 0.00087 38.7 2.7 50 335-384 35-90 (1094)
137 KOG1645 RING-finger-containing 29.1 39 0.00084 34.6 2.3 34 347-381 20-54 (463)
138 PF06103 DUF948: Bacterial pro 29.0 68 0.0015 25.3 3.3 32 19-50 2-33 (90)
139 PF04423 Rad50_zn_hook: Rad50 28.0 20 0.00044 25.6 0.1 11 374-384 22-32 (54)
140 PF12669 P12: Virus attachment 27.6 65 0.0014 23.7 2.7 12 21-32 3-14 (58)
141 PF07948 Nairovirus_M: Nairovi 27.5 6.8 0.00015 41.1 -3.4 41 336-377 494-543 (645)
142 PF10883 DUF2681: Protein of u 26.9 98 0.0021 24.8 3.8 20 20-39 8-27 (87)
143 PF10571 UPF0547: Uncharacteri 26.6 26 0.00056 21.5 0.3 21 360-381 3-23 (26)
144 PF06906 DUF1272: Protein of u 25.9 48 0.001 24.3 1.7 22 359-383 31-52 (57)
145 KOG4218 Nuclear hormone recept 25.7 40 0.00088 33.7 1.7 15 336-350 15-29 (475)
146 COG3813 Uncharacterized protei 25.4 42 0.00091 25.9 1.3 21 359-382 31-51 (84)
147 PF15102 TMEM154: TMEM154 prot 24.9 26 0.00056 30.8 0.2 22 22-43 66-87 (146)
148 PLN02638 cellulose synthase A 24.7 74 0.0016 36.7 3.7 50 335-384 16-71 (1079)
149 PHA02902 putative IMV membrane 24.6 94 0.002 23.4 3.0 21 21-41 7-27 (70)
150 PF08114 PMP1_2: ATPase proteo 24.4 1.4E+02 0.003 20.5 3.6 21 26-46 21-41 (43)
151 PF01102 Glycophorin_A: Glycop 23.6 1E+02 0.0022 26.3 3.5 21 19-39 67-87 (122)
152 PF10497 zf-4CXXC_R1: Zinc-fin 23.0 71 0.0015 26.4 2.4 45 336-380 7-69 (105)
153 COG5109 Uncharacterized conser 22.6 54 0.0012 32.5 1.9 43 337-380 337-384 (396)
154 PLN02400 cellulose synthase 22.3 56 0.0012 37.6 2.2 49 335-384 35-90 (1085)
155 PF06305 DUF1049: Protein of u 21.6 1.4E+02 0.0031 21.8 3.7 26 25-50 30-55 (68)
156 PF06716 DUF1201: Protein of u 21.5 2.5E+02 0.0053 19.8 4.4 29 9-38 3-32 (54)
157 PF10235 Cript: Microtubule-as 21.3 39 0.00085 27.3 0.5 38 336-384 44-81 (90)
158 COG5132 BUD31 Cell cycle contr 21.0 30 0.00065 29.3 -0.2 21 360-381 102-122 (146)
159 COG0364 Zwf Glucose-6-phosphat 20.6 45 0.00097 35.0 0.9 63 190-258 265-336 (483)
160 PF01618 MotA_ExbB: MotA/TolQ/ 20.4 2.2E+02 0.0048 24.2 5.1 29 12-40 97-125 (139)
161 PF02439 Adeno_E3_CR2: Adenovi 20.3 1.2E+02 0.0027 20.4 2.6 16 20-35 11-26 (38)
162 smart00734 ZnF_Rad18 Rad18-lik 20.3 42 0.0009 20.5 0.4 9 374-382 3-11 (26)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-43 Score=336.37 Aligned_cols=331 Identities=20% Similarity=0.338 Sum_probs=267.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCCh-hhHHHHHhhhcCCCCCCcCCccEEEEEEEEeeccc
Q 016312 13 QLAVSFDGAVLGVALAYTAVRSFLDFRYTSNALGKVRNAPQLKV-SDLRALLDEKQSQPSDQEQNSRLVIVRGQVEAKSA 91 (391)
Q Consensus 13 ~~~l~~d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l~~a~~~~i-~~L~~ll~~~~~~~~~~~~~~~~v~V~G~V~~~~~ 91 (391)
+++++.+.+++++. |..|.++.+..+..+.|+++.+ .|++...+.++.+ +++|.+|+|.+.++
T Consensus 6 ~~~~~~~~v~l~l~--------~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~------~I~~l~~~~~~~~~-- 69 (355)
T KOG1571|consen 6 RFLLGLTNVALRLL--------FRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEK------KIPYLVIRGCAIAR-- 69 (355)
T ss_pred HHHHhhhHHHHHhh--------hhhcccchhhHHHhhhccceecchhhhhhhhhcccc------chHHHHHhhccccc--
Confidence 34555555555544 6777888888888999999999 9999999999988 99999999999999
Q ss_pred cccccccccCCCCCeeeccC-CCeEEEEeeEEEEE-EEeeeccCCCcccchhhhcccccccCCcccceeceEEeeCCCCC
Q 016312 92 VDGINWKNLMYSNDILVSES-GDKAVILEQRKAFL-YNEWRDLFGWTPDIRAIFGRSLKTSEPSSLRTVPFILVEGDRWP 169 (391)
Q Consensus 92 ~~~~~~~~~~~~~pL~s~~~-~~~gVi~~~~~~~~-~~e~~~~~~w~~~~~~~~~~~~~e~~~~~~~~vPF~L~d~~~~~ 169 (391)
+.|+++..+ +..||+ +.....+ +..|+....|+...+.+ ++..|++||+|.++..
T Consensus 70 -----------~~~~~~~~v~~v~gvv-~~~~~~~~~~~~~~~~~~~~~~k~~---------~~~~~~~~~~l~~q~~-- 126 (355)
T KOG1571|consen 70 -----------KETLRSLCVSNVPGVV-QALTLEEPKGRRDGGGHWNANSKIF---------HEGGNEVPFFLRSQTT-- 126 (355)
T ss_pred -----------ccchHHhhcccCCceE-EEeeeccceeeeccceeeccceeec---------cCCCcccceeeccCCc--
Confidence 688888888 779999 6666666 66666334499999888 9999999999998841
Q ss_pred CCCcEEEEecCCC--CCCCceeeeeeeEeCC-CcccchhhhhcCCceeeeeeeeeeeecCCceeeeee-eeeecCCccee
Q 016312 170 QSDYIIVNMDGSR--QPLPLTTAYQRLELAN-VSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVG-ICNFKNGIPEI 245 (391)
Q Consensus 170 ~t~~v~V~v~~~~--~~l~l~~v~~~f~p~~-~s~~~~~~~~~~g~~~~G~~~~E~~L~~G~~lt~vG-l~~~~~g~~rI 245 (391)
.-...|+++.++ ..++++++|+.|+|+. .++.+..+++++|.++.|++++|++||+|+.+|++| ++.+..+..|+
T Consensus 127 -~~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~ 205 (355)
T KOG1571|consen 127 -GFACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRV 205 (355)
T ss_pred -ceeeeeeeecceeeeeecceeeeccccccCcceeeecccccccceeeecccceEEeeccccceeeeehheecCCCceEe
Confidence 113457777766 8899999999999999 599999999999999999999999999999999999 87888678899
Q ss_pred ecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH--HHHHHHHhhHhhccCCCC-cc---
Q 016312 246 KSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR--WKDRQQRMSRQLTETPSD-DA--- 319 (391)
Q Consensus 246 q~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~--~k~~~~~~~~~~~e~~~~-~~--- 319 (391)
++|+..|+|++....|+||.++..+.+.++|.++++++.+++++.+....++.. +++.++. .+.++.+.. ++
T Consensus 206 ~~~~~g~~~v~~s~~d~LIsr~g~~s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l--~k~~~~~~~~rae~~ 283 (355)
T KOG1571|consen 206 QPPMQGPLYVTKSAADRLISREGDLSFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRREL--VKRVEDLATVRAELL 283 (355)
T ss_pred cCCccCcceeeccchhhHHHhhccceeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHH--HHhhhhhhhheeeee
Confidence 988744544444449999999999999999999999999999999999998887 5555444 222222221 11
Q ss_pred -c-----ccCCCCccccCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 320 -D-----SQIGSDEEVAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 320 -~-----~~~~~~~~~~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
+ +.+. +.....+.+-...|+||.+++.+++|+||||+|||..|+..+. .||+||+.|...+++|.+
T Consensus 284 s~g~~gtr~~~-~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~-----~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 284 SRGVRGTRIQN-ENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP-----QCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred ccccccccccc-ccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC-----CCchhHHHHHHHHHHhcC
Confidence 0 1222 1112333444569999999999999999999999999999986 699999999999999975
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.94 E-value=6.8e-27 Score=208.47 Aligned_cols=147 Identities=29% Similarity=0.458 Sum_probs=127.9
Q ss_pred EEEEeeeccCCCcccchhhhcccccccCCcccceeceEEeeCCCCCCCCcEEEEecCCCCCCCceeeeeeeEeCCCcccc
Q 016312 124 FLYNEWRDLFGWTPDIRAIFGRSLKTSEPSSLRTVPFILVEGDRWPQSDYIIVNMDGSRQPLPLTTAYQRLELANVSPFT 203 (391)
Q Consensus 124 ~~~~e~~~~~~w~~~~~~~~~~~~~e~~~~~~~~vPF~L~d~~~~~~t~~v~V~v~~~~~~l~l~~v~~~f~p~~~s~~~ 203 (391)
.++.+|+...+|.+..+++ ++..+++||+|+|+ |++|.|..++..++++++++||+|+|...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~v---------~~~~~~vPF~L~D~-----tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~ 69 (160)
T PF12483_consen 4 VEKRESNKSRRWSSSWRTV---------SSGTSEVPFYLEDG-----TGRVRVVDDPEGAELDLETVYDRFEPSPSSPPD 69 (160)
T ss_pred EEEEEcccCCcccccEEEE---------EcceeEcCEEEECC-----ceEEEEecCcccCccceeeEEEEeEECCCCccc
Confidence 3444555323388776666 99999999999998 445444337666999999999999999999999
Q ss_pred hhhhhcCCce---eeeeeeeeeeecCCceeeeee-eeeecCCcceeecCCC--CCeeecccCHHHHHHHHhhhhhhhhhh
Q 016312 204 FLQAMFGLKC---PIGVLAEEKILPLGKDISAVG-ICNFKNGIPEIKSCKD--LPYFLSEKTKDQMVVDLVNRSKILFWS 277 (391)
Q Consensus 204 ~~~~~~~g~~---~~G~~~~E~~L~~G~~lt~vG-l~~~~~g~~rIq~p~g--~pf~Ls~~s~d~Li~~L~~~~r~~~~~ 277 (391)
.+.+++++++ ++|++++|+|||+|++||++| +..+.+|.++|++|+. .|||+|..++++|+++++.++++|+|+
T Consensus 70 ~~~~~~~~~~~~~~~G~r~~E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~ 149 (160)
T PF12483_consen 70 GLFGFFSGERELEPKGYRYTEEILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWL 149 (160)
T ss_pred eeeeeeccceeccccccEEEEEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999 7788899999999974 599999999999999999999999999
Q ss_pred hccccce
Q 016312 278 GIVLGSL 284 (391)
Q Consensus 278 ~iv~g~~ 284 (391)
+++++++
T Consensus 150 ~i~~~~~ 156 (160)
T PF12483_consen 150 AIALGVV 156 (160)
T ss_pred HhheeEE
Confidence 9988877
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-14 Score=102.53 Aligned_cols=55 Identities=25% Similarity=0.758 Sum_probs=51.3
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
.+|.||++++.|.++.-|||+|.|.+|..++++.....||+||++|..+++.|.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 4799999999999999999999999999999976667899999999999999976
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.28 E-value=2.4e-12 Score=92.43 Aligned_cols=49 Identities=35% Similarity=0.869 Sum_probs=42.2
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
+..|.||++++++++++||||.++|..|+..+.. ...+||+||++|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcCC
Confidence 4589999999999999999999999999999975 456899999999864
No 5
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.8e-12 Score=123.06 Aligned_cols=57 Identities=35% Similarity=0.859 Sum_probs=49.7
Q ss_pred CCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeee
Q 016312 333 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~ 390 (391)
.++...|+||+++.+|+++|||.|+|.|..|++.+.-+ ..+|||||++|...+.||.
T Consensus 287 ~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 287 SESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYV 343 (349)
T ss_pred ccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecc
Confidence 34467999999999999999999999999999998732 3479999999999988874
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-11 Score=116.47 Aligned_cols=51 Identities=33% Similarity=0.917 Sum_probs=48.2
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
..+|.||++.++|++||+|||++.|..|-+.+. .|||||+.|.++++||.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~-----eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN-----ECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc-----cCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999986 799999999999999975
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.88 E-value=1.8e-09 Score=97.92 Aligned_cols=58 Identities=34% Similarity=0.678 Sum_probs=46.9
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhh---------------cCCCCcccccccccc--eEEeee
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER---------------EASPKCPVCRMTVRS--SMRIYF 390 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~---------------~~~~~CPiCR~~I~~--~~~iy~ 390 (391)
+..+...|+||++..++++.++|||. ||..|+..|.. ....+||+||.+|.. .+++|.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 34445689999999999999999999 89999998753 123579999999975 677763
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.6e-09 Score=101.36 Aligned_cols=51 Identities=33% Similarity=0.812 Sum_probs=43.5
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
...|.+|+++..++..+||||. ||..|+..|... ...||.||.+...-.-|
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 3699999999999999999999 899999999853 34599999998765444
No 9
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.72 E-value=9.5e-09 Score=71.08 Aligned_cols=39 Identities=38% Similarity=0.873 Sum_probs=31.4
Q ss_pred ccccccccceeEEecCCCccccHHhHHHHhhcCCC---Ccccc
Q 016312 339 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASP---KCPVC 378 (391)
Q Consensus 339 C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~---~CPiC 378 (391)
|+||++...+++.++|||. ||..|+..+++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 899999999975433 59988
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.2e-08 Score=95.28 Aligned_cols=286 Identities=15% Similarity=-0.008 Sum_probs=196.0
Q ss_pred hhHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHH-HHHHHhhhHHhhhhhcCCCCChhhHHHHHhhhcCCCCC----CcCC
Q 016312 3 LLEQHLASL-YQLAVSFDGAVLGVALAYTAVRS-FLDFRYTSNALGKVRNAPQLKVSDLRALLDEKQSQPSD----QEQN 76 (391)
Q Consensus 3 ~~~~~~~~~-~~~~l~~d~~~lG~~~~~~a~~~-~~~~~~~~~~l~~l~~a~~~~i~~L~~ll~~~~~~~~~----~~~~ 76 (391)
++++.++.. +-+||+++....|.....+++.. -.+|.....+...++.+|..+|++|..++...+.++-= -++.
T Consensus 2 ~l~~~~~~~~~~v~l~l~~~~~g~~~~~s~~~~~a~k~~~~~d~~~~~~~~~~~~I~~l~~~~~~~~~~~~~~~~~v~~v 81 (355)
T KOG1571|consen 2 SLEGRFLLGLTNVALRLLFRQYGRLPRVSKVGKEAEKVLVLVDLKSSWDIAPEKKIPYLVIRGCAIARKETLRSLCVSNV 81 (355)
T ss_pred chhHHHHHhhhHHHHHhhhhhcccchhhHHHhhhccceecchhhhhhhhhccccchHHHHHhhcccccccchHHhhcccC
Confidence 345555555 99999999999999998888863 34445567777788899999999999988765544211 1245
Q ss_pred ccEEEEEEEEeeccccccccccccCCCCCeeeccCCCeEEEEeeEEEEEEEeeeccCCCcccchhhhcccccccCCcccc
Q 016312 77 SRLVIVRGQVEAKSAVDGINWKNLMYSNDILVSESGDKAVILEQRKAFLYNEWRDLFGWTPDIRAIFGRSLKTSEPSSLR 156 (391)
Q Consensus 77 ~~~v~V~G~V~~~~~~~~~~~~~~~~~~pL~s~~~~~~gVi~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~e~~~~~~~ 156 (391)
...+.+++..++...+++ .-.++.+-...+..+.+-=+++++|+.- |.... -.++.+.++.+...---..-..
T Consensus 82 ~gvv~~~~~~~~~~~~~~---~~~~~~~~k~~~~~~~~~~~~l~~q~~~---~~~~~-~~s~~~~~~~l~l~~~~d~f~~ 154 (355)
T KOG1571|consen 82 PGVVQALTLEEPKGRRDG---GGHWNANSKIFHEGGNEVPFFLRSQTTG---FACEV-RVSKTLGRLFLPLNVVYDLFEP 154 (355)
T ss_pred CceEEEeeeccceeeecc---ceeeccceeeccCCCcccceeeccCCcc---eeeee-eeecceeeeeecceeeeccccc
Confidence 558999999999843331 1122344555555555545556665544 22111 1122222222222222245677
Q ss_pred eeceEEeeCCCCCCCCcEEEEecCCCCCCCceeeeeeeEeCCCcccchhhhhcCCceeeeeeeeeeeecCCceeeeee-e
Q 016312 157 TVPFILVEGDRWPQSDYIIVNMDGSRQPLPLTTAYQRLELANVSPFTFLQAMFGLKCPIGVLAEEKILPLGKDISAVG-I 235 (391)
Q Consensus 157 ~vPF~L~d~~~~~~t~~v~V~v~~~~~~l~l~~v~~~f~p~~~s~~~~~~~~~~g~~~~G~~~~E~~L~~G~~lt~vG-l 235 (391)
++||.++|..++.+++.....++.....+++.+++....+.....+.-+. --.++.|.++.++.. .++-|+.+| +
T Consensus 155 s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r---~~~~~~g~~~v~~s~-~d~LIsr~g~~ 230 (355)
T KOG1571|consen 155 SDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVR---VQPPMQGPLYVTKSA-ADRLISREGDL 230 (355)
T ss_pred cCcceeeecccccccceeeecccceEEeeccccceeeeehheecCCCceE---ecCCccCcceeeccc-hhhHHHhhccc
Confidence 89999999988877877777777777889999999988877764322222 224578999999999 999999999 5
Q ss_pred eeecCCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHHH
Q 016312 236 CNFKNGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNRW 300 (391)
Q Consensus 236 ~~~~~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~~ 300 (391)
+...+-..+.-..-++|+|+...+|..+++..+..+..+-....++...+-++..+..+.|.+|
T Consensus 231 -s~~~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~~rae~~s~g~~gtr~~~ 294 (355)
T KOG1571|consen 231 -SFFVKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLATVRAELLSRGVRGTRIQN 294 (355)
T ss_pred -eeeeeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhhheeeeeccccccccccc
Confidence 5555555555556779999999999999988877777776666677777778888888888776
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.68 E-value=1.2e-08 Score=69.26 Aligned_cols=38 Identities=42% Similarity=1.081 Sum_probs=32.9
Q ss_pred cccccccccee-EEecCCCccccHHhHHHHhhcCCCCcccc
Q 016312 339 CVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVC 378 (391)
Q Consensus 339 C~IC~~~~~~~-v~lpCGH~~~C~~C~~~~~~~~~~~CPiC 378 (391)
|+||++..+++ ++++|||. ||.+|+.++... ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999 899999999876 6789998
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-08 Score=94.03 Aligned_cols=52 Identities=31% Similarity=0.714 Sum_probs=45.0
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhh--cCCCCccccccccc--ceEEee
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVR--SSMRIY 389 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~--~~~~~CPiCR~~I~--~~~~iy 389 (391)
-.|.||++..+|+|+..|||. ||..|+-+|.. ...+.||+|+..|+ .+++||
T Consensus 48 FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 48 FDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred eeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 489999999999999999999 89999999975 33455899999876 478887
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.55 E-value=4.9e-08 Score=92.02 Aligned_cols=52 Identities=23% Similarity=0.638 Sum_probs=42.1
Q ss_pred ccccccccccccce--------eEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 335 DGQLCVVCLTRRRI--------SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 335 ~~~~C~IC~~~~~~--------~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
++..|+||++...+ .++.+|||. ||..|+..|.. ....||+||.++..+++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~-~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKK-EKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHh-cCCCCCCCCCEeeEEeee
Confidence 34689999997554 356789999 89999999865 356899999999987664
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.6e-08 Score=86.86 Aligned_cols=52 Identities=31% Similarity=0.758 Sum_probs=41.7
Q ss_pred cccccccccccee--EEecCCCccccHHhHHHHhhcCCCCcccccccccc--eEEeee
Q 016312 337 QLCVVCLTRRRIS--AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIYF 390 (391)
Q Consensus 337 ~~C~IC~~~~~~~--v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~~iy~ 390 (391)
..|+|||+....- +-..|||+ ||..|++...+ ...+||+||.+|+. +.+||+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk-~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALK-NTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHH-hCCCCCCcccccchhhheeccC
Confidence 4899999877654 44899999 89999999874 34579999998876 577774
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1e-07 Score=93.89 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=38.9
Q ss_pred ccccccccccce---eEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..|+||++.... ...|||+|.++| .|++.|..+....||+|+++|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCC
Confidence 489999998764 457999999777 99999987654559999998865
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.45 E-value=9.7e-08 Score=66.49 Aligned_cols=40 Identities=35% Similarity=0.791 Sum_probs=33.5
Q ss_pred ccccccccc---ceeEEecCCCccccHHhHHHHhhcCCCCccccc
Q 016312 338 LCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCR 379 (391)
Q Consensus 338 ~C~IC~~~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR 379 (391)
.|+||++.. ..++.++|||. ||.+|+..+.+. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHh-CCcCCccC
Confidence 699999876 46778999999 899999999865 46899997
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.39 E-value=2.1e-07 Score=63.64 Aligned_cols=39 Identities=38% Similarity=0.893 Sum_probs=35.4
Q ss_pred ccccccccceeE-EecCCCccccHHhHHHHhh-cCCCCcccc
Q 016312 339 CVVCLTRRRISA-FNPCGHLVCCRRCAISVER-EASPKCPVC 378 (391)
Q Consensus 339 C~IC~~~~~~~v-~lpCGH~~~C~~C~~~~~~-~~~~~CPiC 378 (391)
|.||++...++. +++|||. ||..|+.++.+ ....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999999 9999999 89999999987 556679998
No 18
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-07 Score=94.26 Aligned_cols=54 Identities=24% Similarity=0.698 Sum_probs=46.0
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcC----CCCcccccccccc--eEEeee
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA----SPKCPVCRMTVRS--SMRIYF 390 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~----~~~CPiCR~~I~~--~~~iy~ 390 (391)
+..|+||++++.-++.+.|||. ||..|+.++|... ...||+||..|.. +.++|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 5689999999999999999999 7889999998732 3569999999987 666653
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.34 E-value=3.8e-07 Score=62.44 Aligned_cols=44 Identities=34% Similarity=0.870 Sum_probs=35.5
Q ss_pred cccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 338 LCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 338 ~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.|.||++...+.+.+ +|||. ||..|...+.......||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998555554 59999 899999998765456799999764
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.33 E-value=2.4e-07 Score=85.22 Aligned_cols=53 Identities=25% Similarity=0.621 Sum_probs=40.8
Q ss_pred Ccccccccccccc---------ceeEEecCCCccccHHhHHHHhhcC-----CCCcccccccccceEE
Q 016312 334 PDGQLCVVCLTRR---------RISAFNPCGHLVCCRRCAISVEREA-----SPKCPVCRMTVRSSMR 387 (391)
Q Consensus 334 ~~~~~C~IC~~~~---------~~~v~lpCGH~~~C~~C~~~~~~~~-----~~~CPiCR~~I~~~~~ 387 (391)
..+..|.||++.. +..++.+|+|. ||..|+..|.+.. ...||+||..+..+.+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3456899999863 23578899999 9999999997532 2349999999886643
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.32 E-value=3.8e-07 Score=63.62 Aligned_cols=41 Identities=34% Similarity=0.984 Sum_probs=34.2
Q ss_pred ccccccccc---ceeEEecCCCccccHHhHHHHhhcCCCCcccccc
Q 016312 338 LCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCRM 380 (391)
Q Consensus 338 ~C~IC~~~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~ 380 (391)
.|.+|+... +.+.+++|||. ||..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhc-CCCCCCcCCCC
Confidence 388999877 46789999999 8999999987 33468999985
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.27 E-value=5.9e-07 Score=59.32 Aligned_cols=39 Identities=33% Similarity=0.928 Sum_probs=34.4
Q ss_pred ccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccc
Q 016312 339 CVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVC 378 (391)
Q Consensus 339 C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiC 378 (391)
|.||++...+++.++|||. ||..|...+......+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 89999999876445679987
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.26 E-value=6.7e-07 Score=66.72 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=41.0
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..|+||.+...+++.+||||+ ||..|+..+... ...||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 369999999999999999999 899999999865 5689999998853
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=7.6e-07 Score=89.75 Aligned_cols=54 Identities=22% Similarity=0.560 Sum_probs=45.8
Q ss_pred ccCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 329 VAGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 329 ~~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....++....|.||.+...+++++||||. ||..|+..+... ...||+||..+..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 34566677899999999999999999999 899999998754 3479999998764
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1e-06 Score=82.95 Aligned_cols=48 Identities=31% Similarity=0.820 Sum_probs=40.5
Q ss_pred cccccccccccceeEEecCCCccccHHhHHH-HhhcCCCCcccccccccc
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAIS-VEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~-~~~~~~~~CPiCR~~I~~ 384 (391)
+..|.||++.+..+..+||||+ ||..|+.. ++.+....||.||+....
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhccc
Confidence 4589999999999999999999 89999999 554444559999998653
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.08 E-value=1.8e-06 Score=59.96 Aligned_cols=36 Identities=31% Similarity=0.882 Sum_probs=21.9
Q ss_pred ccccccccce----eEEecCCCccccHHhHHHHhhcC---CCCcc
Q 016312 339 CVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREA---SPKCP 376 (391)
Q Consensus 339 C~IC~~~~~~----~v~lpCGH~~~C~~C~~~~~~~~---~~~CP 376 (391)
|+||++ +.+ ++.|||||+ +|.+|+.++.... .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 899999 777 899999999 8999999998632 23476
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9e-07 Score=93.98 Aligned_cols=59 Identities=27% Similarity=0.597 Sum_probs=49.1
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc--eEEeee
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIYF 390 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~~iy~ 390 (391)
........|++|-++++++++..|||+ ||..|......-...+||.|...|.. +.+||.
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 344455699999999999999999999 89999999876556789999999875 566663
No 28
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.2e-06 Score=79.58 Aligned_cols=48 Identities=35% Similarity=0.749 Sum_probs=43.1
Q ss_pred cccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeee
Q 016312 338 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390 (391)
Q Consensus 338 ~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~ 390 (391)
.|..|..+...++++||.|.|+|..|...+ ..||+|+.+....+.+|+
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~-----~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESL-----RICPICRSPKTSSVEVNF 207 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccC-----ccCCCCcChhhceeeccC
Confidence 499999999999999999999999998764 379999999999888874
No 29
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.97 E-value=2.5e-06 Score=84.18 Aligned_cols=51 Identities=27% Similarity=0.821 Sum_probs=44.7
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhc-CCCCcccccccccceEEe
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE-ASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~-~~~~CPiCR~~I~~~~~i 388 (391)
++|.||-++.+|+.+-||||. .|..|...|+.. ....||.||..|.+.-+|
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 599999999999999999999 899999999843 356799999999986554
No 30
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.3e-05 Score=78.71 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=36.5
Q ss_pred Cccccccccccccc-------------eeEEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 334 PDGQLCVVCLTRRR-------------ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 334 ~~~~~C~IC~~~~~-------------~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.++..|.||+|+.. .+.-+||||. +-..|.+.|..+ ..+|||||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHh-ccCCCcccCcc
Confidence 34569999999832 2356899999 788999998753 45899999993
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.84 E-value=1.6e-05 Score=61.64 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=40.2
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
++...|+||.+-.++++.+||||. ++..|+..+.......||+|++++..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CcccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 456799999999999999999999 89999999987656789999999875
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.8e-06 Score=78.65 Aligned_cols=47 Identities=34% Similarity=0.755 Sum_probs=40.3
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRM 380 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~ 380 (391)
...+...|+||++.++++.++||||. ||..|+..++. ....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccch-HhHHHHHHhcC-CCcCCcccCC
Confidence 34456799999999999999999999 89999999886 3457999993
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.80 E-value=6.2e-06 Score=79.91 Aligned_cols=52 Identities=29% Similarity=0.661 Sum_probs=44.0
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+++-..|-||.+.++-+++.||||. ||.-|+..+.+. .+.||.|+.++..
T Consensus 18 k~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~-~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSY-KPQCPTCCVTVTE 69 (442)
T ss_pred hhhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhcc-CCCCCceecccch
Confidence 345556799999999999999999999 899999998753 4679999988753
No 34
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.7e-06 Score=78.33 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=42.2
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
..|.||+.....++.++|+|. ||..|++.......+.|++||.+|+..+
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 479999999999999999999 8999998876544566999999998753
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.77 E-value=1.1e-05 Score=76.73 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=43.7
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
...++....|.||-+..+-++..+|||. ||.-|+..... ..+.||+||.+..
T Consensus 19 L~~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~-~qp~CP~Cr~~~~ 70 (391)
T COG5432 19 LKGLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLG-TQPFCPVCREDPC 70 (391)
T ss_pred hhcchhHHHhhhhhheeecceecccccc-hhHHHHHHHhc-CCCCCccccccHH
Confidence 4455566799999999999999999999 89999998864 3467999998754
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.63 E-value=4.9e-05 Score=58.89 Aligned_cols=40 Identities=28% Similarity=0.753 Sum_probs=30.7
Q ss_pred ccccccccc-------------ceeEEecCCCccccHHhHHHHhhcCCCCccccc
Q 016312 338 LCVVCLTRR-------------RISAFNPCGHLVCCRRCAISVEREASPKCPVCR 379 (391)
Q Consensus 338 ~C~IC~~~~-------------~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR 379 (391)
.|.||++.. ...+..+|||. |...|+.++... +..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhc-CCcCCCCC
Confidence 499999776 23456799999 899999998854 44899998
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.9e-05 Score=73.54 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=39.8
Q ss_pred Cccccccccccccc---eeEEecCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 334 PDGQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 334 ~~~~~C~IC~~~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
..+..|+||++++. ..+.+||.|. |-..|..+|...-..+||+||.++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 34569999998763 3677999999 7889999998655568999999875
No 38
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00013 Score=71.30 Aligned_cols=49 Identities=27% Similarity=0.649 Sum_probs=41.1
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
++.+|+||+..+.+++|.||+|. .|+.|+.+..- +.+.|=.|...+...
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlm-N~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLM-NCKRCFFCKTTVIDV 469 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHh-cCCeeeEecceeeeh
Confidence 45699999999999999999999 79999987652 346799999887643
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00017 Score=76.52 Aligned_cols=46 Identities=30% Similarity=0.747 Sum_probs=39.4
Q ss_pred ccccccccccccce-----eEEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 335 DGQLCVVCLTRRRI-----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 335 ~~~~C~IC~~~~~~-----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
....|.||.+.... +..+||||. ||..|...|.++ ...||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHH-hCcCCcchhhh
Confidence 35599999998887 789999999 899999999864 46799999944
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.09 E-value=8e-05 Score=55.68 Aligned_cols=44 Identities=23% Similarity=0.685 Sum_probs=24.3
Q ss_pred ccccccccccccceeE-EecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 335 DGQLCVVCLTRRRISA-FNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
+...|.+|.+-.++++ +-.|.|+ ||..|+.... ...||+|+.+-
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~---~~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI---GSECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGT---TTB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc---CCCCCCcCChH
Confidence 3458999999999996 6899999 8999997754 34699999874
No 41
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.96 E-value=0.00067 Score=66.25 Aligned_cols=52 Identities=29% Similarity=0.719 Sum_probs=42.0
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhh-cCCCCcccccccccceE
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER-EASPKCPVCRMTVRSSM 386 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~-~~~~~CPiCR~~I~~~~ 386 (391)
++.+.|.||-+...-...+||+|. .|..|+.++.. ...+.||+||..-+.++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 455699999999998999999999 89999988753 23457999998866543
No 42
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.88 E-value=0.00083 Score=53.28 Aligned_cols=33 Identities=21% Similarity=0.610 Sum_probs=26.8
Q ss_pred EEecCCCccccHHhHHHHhhc--CCCCccccccccc
Q 016312 350 AFNPCGHLVCCRRCAISVERE--ASPKCPVCRMTVR 383 (391)
Q Consensus 350 v~lpCGH~~~C~~C~~~~~~~--~~~~CPiCR~~I~ 383 (391)
+.-.|+|. |-..|+.++.+. .+..||+||++..
T Consensus 48 v~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 55689999 788999999863 3468999999864
No 43
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.82 E-value=0.0008 Score=65.69 Aligned_cols=31 Identities=32% Similarity=0.741 Sum_probs=27.1
Q ss_pred cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 353 PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 353 pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+|||. +|..|...++......||.|+.++..
T Consensus 25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 79999 89999999987666789999988765
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00025 Score=69.55 Aligned_cols=53 Identities=25% Similarity=0.540 Sum_probs=43.3
Q ss_pred CCCccccccccccccceeE-EecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 332 DIPDGQLCVVCLTRRRISA-FNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
.+.....|+||++-.+..+ ...|+|. ||.+|+..-.+..++.||-||+...+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3344569999999887665 4689999 899999998877778899999987654
No 45
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.62 E-value=0.00076 Score=48.87 Aligned_cols=46 Identities=30% Similarity=0.626 Sum_probs=37.2
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....|..|......-+++||||+ .|..|...-.. .-||+|-.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY---ngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY---NGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhhc---cCCCCCCCcccC
Confidence 34589999999888999999999 69999755432 359999999874
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0014 Score=66.56 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=42.6
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....+..|.||+.....++.+||||. +|..|+.+... ....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhc-cCCCCccccccccc
Confidence 33556799999999999999999999 89999888664 34679999988764
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0012 Score=65.74 Aligned_cols=52 Identities=25% Similarity=0.579 Sum_probs=41.5
Q ss_pred ccccccccccccceeE-----E---ecCCCccccHHhHHHHhhcC------CCCcccccccccceEE
Q 016312 335 DGQLCVVCLTRRRISA-----F---NPCGHLVCCRRCAISVEREA------SPKCPVCRMTVRSSMR 387 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v-----~---lpCGH~~~C~~C~~~~~~~~------~~~CPiCR~~I~~~~~ 387 (391)
.+..|-||++...+.. | .+|-|. ||..|+..|.... .+.||.||.+...+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 3558999999887776 6 789999 8999999987311 4679999999877653
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.46 E-value=0.0014 Score=66.11 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=37.7
Q ss_pred cCCCCcccccccccccccee----EEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRIS----AFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~----v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.....+-+.|+||+++.-+- +..+|-|.+.| .|...|+. ..||+||---
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~---~scpvcR~~q 221 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWD---SSCPVCRYCQ 221 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccch-HHHhhccc---CcChhhhhhc
Confidence 34455667999999876442 56899999777 99999985 5899998543
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.30 E-value=0.0017 Score=58.87 Aligned_cols=47 Identities=28% Similarity=0.612 Sum_probs=39.0
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
..|.||....+.++...|||. ||..|+..-.+ ....|-+|-....+.
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~-kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQ-KGDECGVCGKATYGR 243 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhc-cCCcceecchhhccc
Confidence 489999999999999999999 89999977553 346799998765543
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.13 E-value=0.0027 Score=44.93 Aligned_cols=43 Identities=30% Similarity=0.729 Sum_probs=21.6
Q ss_pred cccccccc--ceeEEec--CCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 339 CVVCLTRR--RISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 339 C~IC~~~~--~~~v~lp--CGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
|++|.+.. ++.-|.| ||+. .|..|...+....+.+||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56676654 3334555 5888 799999999865678999999875
No 51
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.002 Score=61.96 Aligned_cols=46 Identities=28% Similarity=0.640 Sum_probs=39.6
Q ss_pred cccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 338 LCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 338 ~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
.|-||...+.++|...|||. ||..|+..-.+ ...+|++|.+.+.+.
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~q-k~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQ-KGEKCYVCSQQTHGS 288 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccc-cCCcceecccccccc
Confidence 69999999999999999999 89999876543 346799999988764
No 52
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0036 Score=63.85 Aligned_cols=50 Identities=32% Similarity=0.709 Sum_probs=37.6
Q ss_pred Cccccccccccc-----------------cceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTR-----------------RRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~-----------------~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
++...|+||+.. .++.++.||.|. |-..|..++...-+-.||+||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 344589999952 234567899999 78899999986333469999998754
No 53
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.53 E-value=0.0061 Score=59.72 Aligned_cols=45 Identities=38% Similarity=0.871 Sum_probs=37.6
Q ss_pred ccccccccccccceeEEecC--CCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 335 DGQLCVVCLTRRRISAFNPC--GHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpC--GH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
+-..|+||.+...-+++ .| ||. .|..|...+. .+||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~----~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS----NKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc----ccCCccccccccH
Confidence 34589999999988877 77 899 7999997765 4899999999843
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.28 E-value=0.0081 Score=61.19 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=43.6
Q ss_pred CCccccccccccccceeEE-ecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 333 IPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~-lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
.+++..|++|....++++. ..|||. ||..|...+... ...||.|++.+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~-~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSN-HQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhcc-CcCCcccccccchh
Confidence 5666799999999999998 599999 899999998765 56899999887653
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.018 Score=54.99 Aligned_cols=50 Identities=30% Similarity=0.646 Sum_probs=38.1
Q ss_pred CccccccccccccceeEEe-cCCCccccHHhHHHHhh-cCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVER-EASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~-~~~~~CPiCR~~I~~ 384 (391)
..+..|++|-+.+..+... +|||. +|+.|+..-.. ...-+||.|..+...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcc
Confidence 4566999999999888764 69999 89999976432 123479999887664
No 56
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.82 E-value=0.0092 Score=61.44 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=38.7
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhh----cCCCCccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER----EASPKCPVCRMT 381 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~----~~~~~CPiCR~~ 381 (391)
.....|.+|-+...+++...|.|. ||.-|+..... ..+-+||+|--.
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccc
Confidence 345689999999999999999999 89999976543 445689999654
No 57
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.42 E-value=0.016 Score=62.83 Aligned_cols=46 Identities=24% Similarity=0.663 Sum_probs=38.8
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhc-CCCCcccccccccc
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE-ASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~-~~~~CPiCR~~I~~ 384 (391)
..|.+|.+ ...+++.+|||. +|.+|....... ....||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 888889999999 899999888753 23469999988764
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.25 E-value=0.041 Score=52.96 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=38.0
Q ss_pred Ccccccccccccc----ceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRR----RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~----~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.....|+|+.... +-+.+.||||+ ++..++..+. ....||+|-.++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k--~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK--KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc--ccccccccCCcccc
Confidence 3456999998665 44667899999 8999999995 23579999999875
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.09 E-value=0.014 Score=57.05 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=44.3
Q ss_pred CCccccccccccccceeEE-ecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 333 IPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~-lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
+.....|.+|-....|+.. ..|-|. ||..|+...... ...||+|...|-+..+.
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~-~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEE-SKYCPTCDIVIHKTHPL 66 (331)
T ss_pred cccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHH-hccCCccceeccCcccc
Confidence 3445699999999999865 689999 899999988754 67899999988876543
No 60
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.06 E-value=0.062 Score=47.44 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=17.9
Q ss_pred cccccccccccceeEEecCC
Q 016312 336 GQLCVVCLTRRRISAFNPCG 355 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCG 355 (391)
+..|+||++.+-++|+|-|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 45899999999999999883
No 61
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.99 E-value=0.016 Score=62.26 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=37.8
Q ss_pred ccccccccccceeE---EecCCCccccHHhHHHHhhcCCCCcccccccccceEE
Q 016312 337 QLCVVCLTRRRISA---FNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMR 387 (391)
Q Consensus 337 ~~C~IC~~~~~~~v---~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~ 387 (391)
..|++|+....+-. -.+|+|. ||..|+..|.+. ...||+||..+..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRC-AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhh-cccCchhhhhhheeee
Confidence 47888887665543 3699999 899999998753 4579999999887653
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.029 Score=56.35 Aligned_cols=43 Identities=26% Similarity=0.597 Sum_probs=32.4
Q ss_pred ccccccccccce---eEEecCCCccccHHhHHHHhh-------cCCCCcccccc
Q 016312 337 QLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVER-------EASPKCPVCRM 380 (391)
Q Consensus 337 ~~C~IC~~~~~~---~v~lpCGH~~~C~~C~~~~~~-------~~~~~CPiCR~ 380 (391)
..|.||++...- ..++||+|+ ||..|.+.... ...-+||-|.-
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 479999998754 678999999 89999998754 11235776643
No 63
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.037 Score=54.13 Aligned_cols=55 Identities=29% Similarity=0.611 Sum_probs=39.4
Q ss_pred CccccccccccccceeEEecC-CCccccHHhHHHHhhcCCCCccccccc--ccceEEeee
Q 016312 334 PDGQLCVVCLTRRRISAFNPC-GHLVCCRRCAISVEREASPKCPVCRMT--VRSSMRIYF 390 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpC-GH~~~C~~C~~~~~~~~~~~CPiCR~~--I~~~~~iy~ 390 (391)
++...|++|+....++..+.- |.+ ||..|+.+... +-++||+--.+ ++..+|+|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHH-hcCCCCccCCcchHHHHHHHhc
Confidence 445699999988877665555 766 99999999875 34679985544 344566553
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.91 E-value=0.11 Score=50.09 Aligned_cols=43 Identities=30% Similarity=0.663 Sum_probs=35.5
Q ss_pred ccccccccccceeEEec-CCCccccHHhHHHHhhcCCCCcccccc
Q 016312 337 QLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREASPKCPVCRM 380 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lp-CGH~~~C~~C~~~~~~~~~~~CPiCR~ 380 (391)
..|+.|..-.++++-.| |||. ||.+|+....-.....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 58999999999998874 6888 8999998665444568999976
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=92.72 E-value=0.082 Score=38.92 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=28.7
Q ss_pred cccccccccccceeEE-ecCCCccccHHhHHHHhh-cCCCCccc
Q 016312 336 GQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVER-EASPKCPV 377 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~-lpCGH~~~C~~C~~~~~~-~~~~~CPi 377 (391)
...|+|.+....+++. ..|||. |..+.+..+.+ ....+||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 4589999999999987 599999 89999999883 33456998
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.68 E-value=0.055 Score=53.09 Aligned_cols=46 Identities=26% Similarity=0.736 Sum_probs=35.5
Q ss_pred cccccccccc--eeEE--ecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 338 LCVVCLTRRR--ISAF--NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 338 ~C~IC~~~~~--~~v~--lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.|+.|++..- |--| -|||.. .|..|...+....+.+||-||+..+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 5999997642 3334 467887 79999999877777899999998764
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.30 E-value=0.081 Score=45.36 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=40.2
Q ss_pred ccccccccccceeEEe----cCCCccccHHhHHHHhhc--CCCCcccccccccceE
Q 016312 337 QLCVVCLTRRRISAFN----PCGHLVCCRRCAISVERE--ASPKCPVCRMTVRSSM 386 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~l----pCGH~~~C~~C~~~~~~~--~~~~CPiCR~~I~~~~ 386 (391)
-+|-||.+...+..|| =||-. .|..|...+|.- .-+.||+|+..+.+..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4799999999998887 38877 799999999972 2357999999987653
No 68
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.044 Score=53.19 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=31.9
Q ss_pred ccccccccccc-eeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 337 QLCVVCLTRRR-ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 337 ~~C~IC~~~~~-~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
.-|.-|--... --.++||.|+ ||.+|+..-. .+.||.|--+|.++
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~---dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS---DKICPLCDDRVQRI 136 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCc---cccCcCcccHHHHH
Confidence 36776754322 2246899999 8999997754 46799998777654
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.076 Score=50.64 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=37.1
Q ss_pred ccccccccccccce----------eEEecCCCccccHHhHHHHhh-cCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----------SAFNPCGHLVCCRRCAISVER-EASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----------~v~lpCGH~~~C~~C~~~~~~-~~~~~CPiCR~~I~~ 384 (391)
++..|.||-...-. .--|.|+|+ |-..|++.|.- .+...||-|..+++.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 34589999865443 346899999 88999999864 334579999998874
No 70
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.15 E-value=0.19 Score=35.78 Aligned_cols=41 Identities=20% Similarity=0.615 Sum_probs=30.7
Q ss_pred ccccccc--ccceeEEecCC-----CccccHHhHHHHhhcC-CCCccccc
Q 016312 338 LCVVCLT--RRRISAFNPCG-----HLVCCRRCAISVEREA-SPKCPVCR 379 (391)
Q Consensus 338 ~C~IC~~--~~~~~v~lpCG-----H~~~C~~C~~~~~~~~-~~~CPiCR 379 (391)
.|.||++ ...++...||. |. +=..|..+|.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56677889995 44 4569999998543 45799994
No 71
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.10 E-value=0.053 Score=47.73 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=47.3
Q ss_pred cceeecCCCCCeeecc-cCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSE-KTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~-~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..||+++.+|||.... -+. ..|+.+ +|+|.+ .++.+.|+.|.+.+..|.. |.+|++|++.
T Consensus 16 ~aRl~TF~~Wp~~~~~~c~p----~~lA~A--GFy~~g--~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~ 80 (147)
T KOG1101|consen 16 EARLKTFKNWPYSDMDKCTP----EQLAEA--GFYYTG--KQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPE 80 (147)
T ss_pred HHHHhhhhcCCCCCCCCcCH----HHHHhC--CceeeC--CCCceECcccCcccccCCCCCCcHHHHHhhCCC
Confidence 4678899999987642 222 334555 899888 5588999999999999986 9999999874
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.19 Score=47.42 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=37.4
Q ss_pred ccccccccccccce----eEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....|++|.+...+ +++-||||+ +|.+|...+.+ ....||+|-.+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhcc-ccccccCCCCcCcc
Confidence 34589999986655 456799999 79999999975 34569999887654
No 73
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=88.71 E-value=0.42 Score=46.67 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=43.5
Q ss_pred CCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 333 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
+-....|.+|-.+.-..+..||||.-+|.+|+..- ....||+|.......++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccceeeeec
Confidence 33456899999999999999999999999999743 346899998777767765
No 74
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.76 E-value=0.24 Score=46.56 Aligned_cols=44 Identities=30% Similarity=0.682 Sum_probs=33.2
Q ss_pred ccccccccccc---ceeEE--ec-CCCccccHHhHHHHhhcCCCCcc--cccc
Q 016312 336 GQLCVVCLTRR---RISAF--NP-CGHLVCCRRCAISVEREASPKCP--VCRM 380 (391)
Q Consensus 336 ~~~C~IC~~~~---~~~v~--lp-CGH~~~C~~C~~~~~~~~~~~CP--iCR~ 380 (391)
+..|++|.... -++.+ -| |-|. .|..|..++.+..+..|| -|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 34899998632 23333 35 9999 899999999987777899 8843
No 75
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.03 E-value=0.25 Score=54.44 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=34.3
Q ss_pred CCccccccccccccc-------eeEEecCCCccccHHhHHHHhh-cCCCCccccccccc
Q 016312 333 IPDGQLCVVCLTRRR-------ISAFNPCGHLVCCRRCAISVER-EASPKCPVCRMTVR 383 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~-------~~v~lpCGH~~~C~~C~~~~~~-~~~~~CPiCR~~I~ 383 (391)
......|+||+.-.. +-.--.|.|- |-..|.-+|.+ ..+.+||+||..|+
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 334558999996322 1112357888 67799999875 34568999998876
No 76
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=86.77 E-value=0.91 Score=34.29 Aligned_cols=31 Identities=6% Similarity=-0.036 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q 016312 18 FDGAVLGVALAYTAVRSFLDFRYTSNALGKV 48 (391)
Q Consensus 18 ~d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l 48 (391)
.|.+.+++|.+++|++.|-.|.+++.....-
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYnr~~~~q~~~ 33 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYNRKKTTQNTN 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 5788899999999999999998876654433
No 77
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=86.68 E-value=0.13 Score=39.10 Aligned_cols=57 Identities=16% Similarity=0.407 Sum_probs=42.5
Q ss_pred ceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhh
Q 016312 243 PEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMS 308 (391)
Q Consensus 243 ~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~ 308 (391)
.|++++.+||+... ..+.+|+.+ +|+|.+ .++...|+.|...+..|.. |++|.++.+
T Consensus 4 ~R~~sF~~w~~~~~-----~~~~~LA~~--Gfyy~~--~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p 64 (71)
T smart00238 4 ARLKTFQNWPYNSK-----LTPEQLAEA--GFYYTG--VGDEVKCFFCGGELDNWEPGDDPWEEHKKWSP 64 (71)
T ss_pred HHHHHHHcCCCCcc-----CCHHHHHHc--CCeECC--CCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCc
Confidence 57888888886222 224667776 888887 4778999999999999975 888887743
No 78
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=86.36 E-value=0.37 Score=55.35 Aligned_cols=50 Identities=20% Similarity=0.565 Sum_probs=35.8
Q ss_pred ccccccccccccc---eeEEecCCCccccHHhHHHHhhc----C-----CCCcccccccccce
Q 016312 335 DGQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVERE----A-----SPKCPVCRMTVRSS 385 (391)
Q Consensus 335 ~~~~C~IC~~~~~---~~v~lpCGH~~~C~~C~~~~~~~----~-----~~~CPiCR~~I~~~ 385 (391)
.+..|.||+++.- .++-|.|+|+ |-..|...+... . --.||+|.++|...
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3458999998754 4567999999 566776665431 1 13599999999864
No 79
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.78 E-value=0.28 Score=47.60 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=31.4
Q ss_pred ccccccccccce---eEEecCCCccccHHhHHHHhh----------------------cCCCCccccccccc
Q 016312 337 QLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVER----------------------EASPKCPVCRMTVR 383 (391)
Q Consensus 337 ~~C~IC~~~~~~---~v~lpCGH~~~C~~C~~~~~~----------------------~~~~~CPiCR~~I~ 383 (391)
..|+||+--+.+ .+..+|-|...| .|..+... +....||+||-+|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~-~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHF-ACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 379999876654 345799999665 77766422 11234999999875
No 80
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=83.30 E-value=1.2 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=17.8
Q ss_pred cHHhHHHHhh------------cCCCCccccccccc
Q 016312 360 CRRCAISVER------------EASPKCPVCRMTVR 383 (391)
Q Consensus 360 C~~C~~~~~~------------~~~~~CPiCR~~I~ 383 (391)
|.+|.-++.. .....||.||+++-
T Consensus 316 C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 316 CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 8889888753 12346999999875
No 81
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=0.55 Score=49.92 Aligned_cols=41 Identities=29% Similarity=0.631 Sum_probs=32.1
Q ss_pred cccccccccc----cceeEEecCCCccccHHhHHHHhhcCCCCccccccc
Q 016312 336 GQLCVVCLTR----RRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMT 381 (391)
Q Consensus 336 ~~~C~IC~~~----~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 381 (391)
-..|.||+.. ...++++-|||. .|..|+..+.+ ..|| |..+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn---~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN---ASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh---ccCC-CCcc
Confidence 4589999654 457889999999 79999999874 4798 6443
No 82
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=81.30 E-value=0.47 Score=47.79 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=0.0
Q ss_pred cccccccccc-------------------cceeEEecCCCccccHHhHHHHhhc----C-----CCCcccccccccc---
Q 016312 336 GQLCVVCLTR-------------------RRISAFNPCGHLVCCRRCAISVERE----A-----SPKCPVCRMTVRS--- 384 (391)
Q Consensus 336 ~~~C~IC~~~-------------------~~~~v~lpCGH~~~C~~C~~~~~~~----~-----~~~CPiCR~~I~~--- 384 (391)
...|++|+.. +-..+|-||||+| =...+ +.|.+ . ...||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa-~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTA-KYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhh-hhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 5689999842 2335789999992 33333 33331 1 1469999999875
Q ss_pred eEEee
Q 016312 385 SMRIY 389 (391)
Q Consensus 385 ~~~iy 389 (391)
.+|++
T Consensus 406 ~vrLi 410 (416)
T PF04710_consen 406 YVRLI 410 (416)
T ss_dssp -----
T ss_pred ceEEE
Confidence 45554
No 83
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=0.74 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=28.4
Q ss_pred ccccccccccceeEEecC----CCccccHHhHHHHhh
Q 016312 337 QLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER 369 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpC----GH~~~C~~C~~~~~~ 369 (391)
..|.+|.++.-|..|+.| .|- ||..|+..-.+
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK 304 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 304 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccc-eecccCHHHHH
Confidence 589999999999999999 588 89999987654
No 84
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=80.85 E-value=0.44 Score=36.48 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=20.7
Q ss_pred ccccccccccc-e---eEE----ecCCCccccHHhHHHHhhc----------CCCCccccccccc
Q 016312 337 QLCVVCLTRRR-I---SAF----NPCGHLVCCRRCAISVERE----------ASPKCPVCRMTVR 383 (391)
Q Consensus 337 ~~C~IC~~~~~-~---~v~----lpCGH~~~C~~C~~~~~~~----------~~~~CPiCR~~I~ 383 (391)
..|.||++..- + +.. -.|++. |=..|...|... ...+||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 47999997643 1 111 256655 445888888541 1236999999986
No 85
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=80.75 E-value=0.37 Score=36.31 Aligned_cols=57 Identities=18% Similarity=0.387 Sum_probs=41.0
Q ss_pred ceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhh
Q 016312 243 PEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMS 308 (391)
Q Consensus 243 ~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~ 308 (391)
.|++++.+||+-.. ..+.+|+.+ +|+|.+ ..+...|+.|...+..|.. +.+|.++.+
T Consensus 2 ~R~~TF~~w~~~~~-----~~~~~La~~--Gfyy~~--~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p 62 (69)
T cd00022 2 ARLKTFKNWPISLK-----VTPEKLAEA--GFYYTG--RGDEVKCFFCGLELKNWEPGDDPWEEHKRWSP 62 (69)
T ss_pred hHHHHHHcCCCCcc-----CCHHHHHHc--CCeEcC--CCCEEEeCCCCCCccCCCCCCCHHHHHhHhCc
Confidence 46778888875411 124567776 888876 3677899999999999975 888887743
No 86
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=80.48 E-value=0.49 Score=46.19 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=39.6
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
...|.+|+++..-....+|||.+||..|......+....||+|-..+.+..
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~ 186 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG 186 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence 458999999999999999999999999976653333445999976555433
No 87
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=80.15 E-value=0.4 Score=36.44 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=41.0
Q ss_pred eeecCC-CCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhh
Q 016312 244 EIKSCK-DLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMS 308 (391)
Q Consensus 244 rIq~p~-g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~ 308 (391)
|++++. +||.-.... ....++|+.+ +|+|.+ .++...|++|...+..|.. +.+|.++.+
T Consensus 1 Rl~SF~~~wp~~~~~~--~~~~~~LA~a--GFyy~~--~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp 64 (70)
T PF00653_consen 1 RLKSFRSNWPHSNDHD--PVSPEKLARA--GFYYTG--TGDRVRCFYCGLELDNWEPNDDPWEEHKRHSP 64 (70)
T ss_dssp HHHGGTTGSSTTTTTS--SSHHHHHHHT--TEEEES--STTEEEETTTTEEEES-STT--HHHHHHHHST
T ss_pred ChhHHCCcccCccccC--CCCHHHHHHC--CCEEcC--CCCEEEEeccCCEEeCCCCCCCHHHHHHHHCc
Confidence 467775 587322111 1234667777 899988 4889999999999999974 899988744
No 88
>PHA03049 IMV membrane protein; Provisional
Probab=80.01 E-value=1.6 Score=32.82 Aligned_cols=32 Identities=3% Similarity=-0.057 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Q 016312 18 FDGAVLGVALAYTAVRSFLDFRYTSNALGKVR 49 (391)
Q Consensus 18 ~d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l~ 49 (391)
.|.+.+++|.+++|++.|-.|.+++....--.
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYnkk~~~q~~~p 34 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYNKKTTTSQNPP 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 57888999999999999999988766554443
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=1 Score=43.83 Aligned_cols=34 Identities=35% Similarity=0.770 Sum_probs=27.1
Q ss_pred eeEEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 348 ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 348 ~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.+..+.|||. +|..|+..+.......||.||.+.
T Consensus 21 ~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 21 IPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 3445569999 899999999865555699999985
No 90
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=0.64 Score=36.09 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=29.0
Q ss_pred cccccccccceeEE--ecCCCccccHHhHHHHhhc--CCCCccccccccc
Q 016312 338 LCVVCLTRRRISAF--NPCGHLVCCRRCAISVERE--ASPKCPVCRMTVR 383 (391)
Q Consensus 338 ~C~IC~~~~~~~v~--lpCGH~~~C~~C~~~~~~~--~~~~CPiCR~~I~ 383 (391)
.|+-|.-..-++-+ =-|.|. |=.-|+.++... ....||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence 45555444444332 268888 677999988642 2356999999754
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=78.63 E-value=0.92 Score=39.18 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=26.0
Q ss_pred ccccccccccce---eEEecCC------CccccHHhHHHHhh
Q 016312 337 QLCVVCLTRRRI---SAFNPCG------HLVCCRRCAISVER 369 (391)
Q Consensus 337 ~~C~IC~~~~~~---~v~lpCG------H~~~C~~C~~~~~~ 369 (391)
..|.||++.--+ .+.++|| |+ ||.+|..+|.+
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~ 67 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRR 67 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHh
Confidence 479999987655 7788998 56 89999999953
No 92
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.85 E-value=1.8 Score=38.49 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=32.7
Q ss_pred ccccccccccccceeEEecCCCcc----ccHHhHHHHhhc-CCCCccccccccc
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLV----CCRRCAISVERE-ASPKCPVCRMTVR 383 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~----~C~~C~~~~~~~-~~~~CPiCR~~I~ 383 (391)
.+..|-||++...+ ..-||...- .=.+|...|... ....|++|+.++.
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35589999988654 345775221 124899998763 3456999999874
No 93
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.80 E-value=1.9 Score=42.25 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=31.5
Q ss_pred ccccccccccc-------------------ceeEEecCCCccccHHhHHHHhhcC---------CCCcccccccccc
Q 016312 336 GQLCVVCLTRR-------------------RISAFNPCGHLVCCRRCAISVEREA---------SPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~~-------------------~~~v~lpCGH~~~C~~C~~~~~~~~---------~~~CPiCR~~I~~ 384 (391)
+..|++|+..- -.-.|-||||+ |.+=....|.+. ..-||.|-+....
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45899998532 22357899998 555555666521 2359999887765
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.76 E-value=1.7 Score=43.83 Aligned_cols=52 Identities=21% Similarity=0.480 Sum_probs=36.6
Q ss_pred cccccccccc---ceeEEecCCCccccHHhHHHHhhcCC--CCccccccccc--ceEEee
Q 016312 337 QLCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREAS--PKCPVCRMTVR--SSMRIY 389 (391)
Q Consensus 337 ~~C~IC~~~~---~~~v~lpCGH~~~C~~C~~~~~~~~~--~~CPiCR~~I~--~~~~iy 389 (391)
-.|+|=.+.- .-|+.+.|||+ .|.+=+.++.+... -+||-|-.... ...++|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~ 393 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLY 393 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhccccc
Confidence 4888866443 34778999999 79999999886544 57999965433 345554
No 95
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=74.06 E-value=2.4 Score=46.40 Aligned_cols=58 Identities=26% Similarity=0.500 Sum_probs=40.6
Q ss_pred CCCCccccccccccc--cceeEEecCCCcc----ccHHhHHHHhhc-CCCCcccccccccceEEee
Q 016312 331 GDIPDGQLCVVCLTR--RRISAFNPCGHLV----CCRRCAISVERE-ASPKCPVCRMTVRSSMRIY 389 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~--~~~~v~lpCGH~~----~C~~C~~~~~~~-~~~~CPiCR~~I~~~~~iy 389 (391)
...+|+..|.||..+ +-++.|.||...- .-.+|...|... ..++|-+|..+++ ..++|
T Consensus 7 ~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~-Fk~IY 71 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK-FKDIY 71 (1175)
T ss_pred CCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee-eeeec
Confidence 344556799999965 4678999997431 235899888753 3467999998875 44444
No 96
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=73.41 E-value=1.2 Score=36.16 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=23.6
Q ss_pred CCcccccccccccccee--EEecCCCccccHHhHH
Q 016312 333 IPDGQLCVVCLTRRRIS--AFNPCGHLVCCRRCAI 365 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~--v~lpCGH~~~C~~C~~ 365 (391)
+++...|.+|-....+. +..||||. +...|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 35566899999876554 44799998 6778864
No 97
>PHA02862 5L protein; Provisional
Probab=73.33 E-value=2.6 Score=36.83 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=34.3
Q ss_pred ccccccccccceeEEecCCCcc----ccHHhHHHHhhc-CCCCcccccccccceEEee
Q 016312 337 QLCVVCLTRRRISAFNPCGHLV----CCRRCAISVERE-ASPKCPVCRMTVRSSMRIY 389 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~----~C~~C~~~~~~~-~~~~CPiCR~~I~~~~~iy 389 (391)
..|-||++...+. .-||...- .=.+|..+|.+. .+..||+|+.+.. +.+.|
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~-Ik~~y 58 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN-IKKTY 58 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE-EEEcc
Confidence 4799999887554 46876321 135899998753 3456999999875 44444
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=71.56 E-value=1 Score=48.55 Aligned_cols=47 Identities=17% Similarity=0.552 Sum_probs=38.8
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhc--CCCCcccccccccc
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiCR~~I~~ 384 (391)
..|.||.....+++.+.|-|. ||..|....... ....||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 479999999999999999999 899998876542 24579999987764
No 99
>PHA03096 p28-like protein; Provisional
Probab=69.57 E-value=2.7 Score=41.11 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=25.2
Q ss_pred ccccccccccc--------eeEEecCCCccccHHhHHHHhh
Q 016312 337 QLCVVCLTRRR--------ISAFNPCGHLVCCRRCAISVER 369 (391)
Q Consensus 337 ~~C~IC~~~~~--------~~v~lpCGH~~~C~~C~~~~~~ 369 (391)
..|-||+++.. .-++-.|-|. ||..|+..|..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHH
Confidence 57999997543 3456799999 89999998754
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=67.99 E-value=3.9 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.586 Sum_probs=24.5
Q ss_pred cccccccccceeEEecCC-CccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 338 LCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 338 ~C~IC~~~~~~~v~lpCG-H~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
-|.-|.-..+.. +.|. |. .|..|...+.. .+..||+|..++...+
T Consensus 4 nCKsCWf~~k~L--i~C~dHY-LCl~CLt~ml~-~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHY-LCLNCLTLMLS-RSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSE--EE-SS-E-EEHHHHHHT-S-SSSEETTTTEE----S
T ss_pred cChhhhhcCCCe--eeecchh-HHHHHHHHHhc-cccCCCcccCcCcccc
Confidence 477888666654 5675 66 89999998874 3567999998876554
No 101
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.83 E-value=2.2 Score=42.96 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=34.2
Q ss_pred cccccccccc----cceeEEecCCCccccHHhHHHHhhcC-CCCcccccccccce
Q 016312 336 GQLCVVCLTR----RRISAFNPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSS 385 (391)
Q Consensus 336 ~~~C~IC~~~----~~~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~~ 385 (391)
+.-|-.|-+. +.+.--+||.|. |-..|...+..++ ...||-||.-+.++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrSs~ 418 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRSSM 418 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHhhc
Confidence 3478888753 334456899999 7889998876433 34699999655543
No 102
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.37 E-value=4.1 Score=41.12 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=24.8
Q ss_pred cccceeEEe-cCCCccccHHhHHHHhhcCC--CCccccc
Q 016312 344 TRRRISAFN-PCGHLVCCRRCAISVEREAS--PKCPVCR 379 (391)
Q Consensus 344 ~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~--~~CPiCR 379 (391)
.+..+..-+ .|||. |=..|..+|....+ ..||+|+
T Consensus 15 p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 15 PNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ccccccccccchhhH-HHHHHHHHHHccCCccCCCCcee
Confidence 334444444 49999 78899999986332 4799998
No 103
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.39 E-value=2.7 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=15.9
Q ss_pred CCCccccccccccc-cceeEEecCCCcc
Q 016312 332 DIPDGQLCVVCLTR-RRISAFNPCGHLV 358 (391)
Q Consensus 332 ~~~~~~~C~IC~~~-~~~~v~lpCGH~~ 358 (391)
...++..|-||... +. --|||.|
T Consensus 61 Gv~ddatC~IC~KTKFA----DG~GH~C 84 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFA----DGCGHNC 84 (169)
T ss_pred ccCcCcchhhhhhcccc----cccCccc
Confidence 44567799999842 33 3689984
No 104
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=64.12 E-value=2 Score=41.69 Aligned_cols=44 Identities=25% Similarity=0.558 Sum_probs=33.7
Q ss_pred ccccccc----cceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 339 CVVCLTR----RRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 339 C~IC~~~----~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
|+||.+. ...+..++|||.-. ..|...+.... .+||+|-. +..+
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~-y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEG-YTCPICSK-PGDM 208 (276)
T ss_pred CchhHHHhccccccCCccCcccchH-HHHHHHHhccC-CCCCcccc-hHHH
Confidence 9999864 45677899999955 78988887554 78999987 4433
No 105
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=62.78 E-value=5.6 Score=27.91 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=22.2
Q ss_pred ccccccccc--eeEEecCCCcc----ccHHhHHHHhh-cCCCCcccc
Q 016312 339 CVVCLTRRR--ISAFNPCGHLV----CCRRCAISVER-EASPKCPVC 378 (391)
Q Consensus 339 C~IC~~~~~--~~v~lpCGH~~----~C~~C~~~~~~-~~~~~CPiC 378 (391)
|-||++... ++...||+-.- .=..|+.+|.. ..+.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 778887643 25778995110 12389998875 334569988
No 106
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.19 E-value=11 Score=29.56 Aligned_cols=50 Identities=26% Similarity=0.689 Sum_probs=19.9
Q ss_pred ccccccccccccce----eEEecCCCc--cccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----SAFNPCGHL--VCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+.+.|.||-+..-- -+|+-|... -.|..|+.-=.+.....||-|+.+..+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 35689999865321 245555422 259999865444445679999988764
No 107
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.07 E-value=6.6 Score=38.60 Aligned_cols=41 Identities=17% Similarity=0.474 Sum_probs=24.5
Q ss_pred cccceeEEecCCCccccHHhHHHHhh-----cCCCCcccccccccceEEee
Q 016312 344 TRRRISAFNPCGHLVCCRRCAISVER-----EASPKCPVCRMTVRSSMRIY 389 (391)
Q Consensus 344 ~~~~~~v~lpCGH~~~C~~C~~~~~~-----~~~~~CPiCR~~I~~~~~iy 389 (391)
++..-.+++.|||+- -...|-. +....||+||.. ..+++++
T Consensus 312 ~~~QP~vYl~CGHV~----G~H~WG~~e~~g~~~r~CPmC~~~-gp~V~L~ 357 (429)
T KOG3842|consen 312 DEKQPWVYLNCGHVH----GYHNWGVRENTGQRERECPMCRVV-GPYVPLW 357 (429)
T ss_pred cccCCeEEEeccccc----cccccccccccCcccCcCCeeeee-cceeeee
Confidence 344557899999982 2223321 224579999865 3356554
No 108
>PLN02189 cellulose synthase
Probab=56.32 E-value=7.6 Score=44.13 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=34.3
Q ss_pred cccccccccccc----ceeEEecCCC--ccccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRR----RISAFNPCGH--LVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~----~~~v~lpCGH--~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+.|.||-+.- ..-.|+.|+- ...|..|++--.+..+..||-|+++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 345999999873 3335677652 1269999955444556679999998774
No 109
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=54.43 E-value=13 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.6
Q ss_pred EecCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 351 FNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 351 ~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
-=-|.|. |=.-|+.++... ...||+||++..
T Consensus 51 wG~CnHa-FH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 51 WGVCNHA-FHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred EEecchH-HHHHHHHHHHhh-CCCCCCCCceeE
Confidence 3479999 788999998753 456999999864
No 110
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=11 Score=35.50 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=36.3
Q ss_pred cccccccccc--cceeEEecCCCccccHHhHHHHhh-------cCCCCcccccccccc
Q 016312 336 GQLCVVCLTR--RRISAFNPCGHLVCCRRCAISVER-------EASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~--~~~~v~lpCGH~~~C~~C~~~~~~-------~~~~~CPiCR~~I~~ 384 (391)
...|..|-.. ..+++-|-|-|+ |-..|...... +....||.|.+.|-.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3368888764 568888999999 78899988653 334579999998754
No 111
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.60 E-value=12 Score=35.67 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=33.3
Q ss_pred cccccccc----cccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 336 GQLCVVCL----TRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~----~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...|+|-- +..+.+++.+|||+ |=..-.+++- ...|++|.+.++.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik---as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK---ASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEecccee-ccHHHHHHhh---hccccccCCcccc
Confidence 34898865 45567888999999 6666666654 3589999998765
No 112
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.23 E-value=7.1 Score=33.32 Aligned_cols=24 Identities=25% Similarity=0.910 Sum_probs=18.9
Q ss_pred cccHHhHHHHhhcCCCCcccccccccce
Q 016312 358 VCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 358 ~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
.||..|-.... ..||+|..+|.+-
T Consensus 29 afcskcgeati----~qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATI----TQCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHH----hcCCccCCccccc
Confidence 38999987765 3699999999763
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.54 E-value=9.6 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=31.1
Q ss_pred cccccccccccce-------eEEecCCCccccHHhHHHHhhc-----CCCCcccccccccce
Q 016312 336 GQLCVVCLTRRRI-------SAFNPCGHLVCCRRCAISVERE-----ASPKCPVCRMTVRSS 385 (391)
Q Consensus 336 ~~~C~IC~~~~~~-------~v~lpCGH~~~C~~C~~~~~~~-----~~~~CPiCR~~I~~~ 385 (391)
...|.+|.....+ +..-.|+|. +|..|+..+..+ ....|+.|..-|...
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 3455555544444 223349999 899999998652 234588887766553
No 114
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.43 E-value=2.9 Score=32.03 Aligned_cols=42 Identities=24% Similarity=0.579 Sum_probs=22.4
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
..|+.|..+.... =||. .|..|...+... ..||-|.++.+..
T Consensus 2 ~~CP~C~~~L~~~----~~~~-~C~~C~~~~~~~--a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ----GGHY-HCEACQKDYKKE--AFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE----TTEE-EETTT--EEEEE--EE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe----CCEE-ECccccccceec--ccCCCcccHHHHH
Confidence 3689998663222 1666 899998876532 4699999887754
No 115
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=7.7 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.588 Sum_probs=23.5
Q ss_pred ccccccccccccee----EEecCCCccccHHhHHHHhh
Q 016312 336 GQLCVVCLTRRRIS----AFNPCGHLVCCRRCAISVER 369 (391)
Q Consensus 336 ~~~C~IC~~~~~~~----v~lpCGH~~~C~~C~~~~~~ 369 (391)
...|.||+...... ...-|+|. ||.+|..+...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccch-hhhHHhHHHhh
Confidence 45899999333222 14679999 89999997654
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=47.76 E-value=14 Score=26.23 Aligned_cols=43 Identities=30% Similarity=0.590 Sum_probs=18.4
Q ss_pred cccccccccceeE-EecCCCccccHHhHHHH--h-hcCCCCccccccc
Q 016312 338 LCVVCLTRRRISA-FNPCGHLVCCRRCAISV--E-REASPKCPVCRMT 381 (391)
Q Consensus 338 ~C~IC~~~~~~~v-~lpCGH~~~C~~C~~~~--~-~~~~~~CPiCR~~ 381 (391)
.|++.......++ -..|.|. -|.+=..=+ . +...-+||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 6888888877766 5799999 343321111 1 1222369999864
No 117
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.13 E-value=6.3 Score=39.95 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=0.0
Q ss_pred cccceeEEecCCCccccHHhHHHHhh-----cCCCCcccccccccceEEe
Q 016312 344 TRRRISAFNPCGHLVCCRRCAISVER-----EASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 344 ~~~~~~v~lpCGH~~~C~~C~~~~~~-----~~~~~CPiCR~~I~~~~~i 388 (391)
+...-.+++.|||+. =...|-. .....||+||+. ..++++
T Consensus 299 ~~~qP~VYl~CGHVh----G~h~Wg~~~~~~~~~r~CPlCr~~-g~~V~L 343 (416)
T PF04710_consen 299 DERQPWVYLNCGHVH----GYHNWGQDSDRDPRSRTCPLCRQV-GPYVPL 343 (416)
T ss_dssp --------------------------------------------------
T ss_pred cccCceeecccccee----eecccccccccccccccCCCcccc-CCceeE
Confidence 344456899999983 2222211 113579999876 333444
No 118
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.06 E-value=10 Score=33.59 Aligned_cols=23 Identities=26% Similarity=0.842 Sum_probs=20.1
Q ss_pred ccHHhHHHHhhcCCCCcccccccccce
Q 016312 359 CCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 359 ~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
||..|-..... .||.|..+|.+-
T Consensus 30 fC~kCG~~tI~----~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 30 FCSKCGAKTIT----SCPNCSTPIRGD 52 (158)
T ss_pred HHHHhhHHHHH----HCcCCCCCCCCc
Confidence 89999988874 799999999874
No 119
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=46.82 E-value=28 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=15.4
Q ss_pred hHHhhhhhcC----CCCChhhHHHHHhhh
Q 016312 42 SNALGKVRNA----PQLKVSDLRALLDEK 66 (391)
Q Consensus 42 ~~~l~~l~~a----~~~~i~~L~~ll~~~ 66 (391)
+.+++.|+.. +.-.+.+|..||+..
T Consensus 52 r~Al~~L~~l~~~~~~~~~~~l~~LLKr~ 80 (146)
T PF14316_consen 52 REALRELAQLESSDDAEWLAALNELLKRV 80 (146)
T ss_pred HHHHHHHHHccccCcHHHHHHHHHHHHHH
Confidence 4455666554 334458888888764
No 120
>PF15339 Afaf: Acrosome formation-associated factor
Probab=45.27 E-value=51 Score=29.78 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCCh-hhHHHHH
Q 016312 7 HLASL-YQLAVSFDGAVLGVALAYTAVRSFLDFRYTSNALGKVRNAPQLKV-SDLRALL 63 (391)
Q Consensus 7 ~~~~~-~~~~l~~d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l~~a~~~~i-~~L~~ll 63 (391)
++-.+ .+|-||+.+.-|=+.+.++|+++--.|+-+.-.-+ .--.+++| ++|..+-
T Consensus 124 ~le~~KlkLmLGIsLmTl~lfv~Ll~~c~atlyklk~l~~k--~~esqYsvnPELA~lS 180 (200)
T PF15339_consen 124 ELEELKLKLMLGISLMTLFLFVILLAFCSATLYKLKHLSYK--SCESQYSVNPELATLS 180 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccccccCHHHhhhc
Confidence 34455 88999999988888888888886666643333333 33448999 9998754
No 121
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.82 E-value=17 Score=34.62 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=28.7
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHh
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVE 368 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~ 368 (391)
-..|..|+...++++..|=||+ ||.+|+....
T Consensus 43 FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe~i 74 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYL-FDREAILEYI 74 (303)
T ss_pred cceeeeecccccCCccCCCCee-eeHHHHHHHH
Confidence 4489999999999999999999 8999998754
No 122
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=40.48 E-value=9.2 Score=44.17 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=35.7
Q ss_pred Cccccccccccccc-eeEEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 334 PDGQLCVVCLTRRR-ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 334 ~~~~~C~IC~~~~~-~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.+...|.||.+..+ .....-|||. +|..|...+... ...||+|...+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHH-hccCcchhhhh
Confidence 34558999999887 5566799999 677999887643 45799997543
No 123
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=40.06 E-value=12 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016312 23 LGVALAYTAVRSFLDFRYT 41 (391)
Q Consensus 23 lG~~~~~~a~~~~~~~~~~ 41 (391)
+|++.+++++++|+.||++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4566666777756666554
No 124
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.80 E-value=32 Score=29.36 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhHH
Q 016312 32 VRSFLDFRYTSNA 44 (391)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (391)
+++|+..|.+|+.
T Consensus 83 li~y~irR~~Kk~ 95 (122)
T PF01102_consen 83 LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHS---
T ss_pred HHHHHHHHHhccC
Confidence 4445555555553
No 125
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.61 E-value=7 Score=43.20 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=32.6
Q ss_pred cccccccccc-ceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 337 QLCVVCLTRR-RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 337 ~~C~IC~~~~-~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
..|..|-... -..|...|||. +-..|... ....||-|+....++.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e~----~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLED----KEDKCPKCLPELRGVM 886 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhcc----CcccCCccchhhhhhH
Confidence 4899998664 44567899999 67788872 2357999998655443
No 126
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=35.64 E-value=1.1e+02 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 016312 19 DGAVLGVALAYTAVRSFLDFRYTS 42 (391)
Q Consensus 19 d~~~lG~~~~~~a~~~~~~~~~~~ 42 (391)
|..++.++.+|+.++.|-.||++.
T Consensus 5 Da~~~~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 5 DALLTVIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777888888888888888887764
No 127
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=35.61 E-value=32 Score=23.58 Aligned_cols=17 Identities=47% Similarity=0.936 Sum_probs=10.9
Q ss_pred HhHHHHhhcCC-CCcccc
Q 016312 362 RCAISVEREAS-PKCPVC 378 (391)
Q Consensus 362 ~C~~~~~~~~~-~~CPiC 378 (391)
.|+..+++... .+||.|
T Consensus 26 ~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 26 DCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp HHHHHHTTT-SS-B-TTT
T ss_pred HHHHHHHhcCCCCCCcCC
Confidence 88988886433 369987
No 128
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=23 Score=34.58 Aligned_cols=25 Identities=32% Similarity=0.782 Sum_probs=18.6
Q ss_pred ccHHhHHHHhh------------cCCCCccccccccc
Q 016312 359 CCRRCAISVER------------EASPKCPVCRMTVR 383 (391)
Q Consensus 359 ~C~~C~~~~~~------------~~~~~CPiCR~~I~ 383 (391)
-|.+|..++.. ..+..||+||+.+-
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 48899888742 33567999999875
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=32.81 E-value=27 Score=34.65 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=33.8
Q ss_pred cccccccccc--ceeEEe--cCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 337 QLCVVCLTRR--RISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 337 ~~C~IC~~~~--~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
..|++|.+.. .+.-++ ||||. .|..|...... ....||.||.+...-
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~-~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISD-GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccc-cCCCCCccCCccccC
Confidence 5899999844 333444 56888 79889877653 356899999877653
No 130
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.41 E-value=8.5 Score=37.37 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=34.6
Q ss_pred cccccccccccc------eeEEec--------CCCccccHHhHHHHhhcCCCCccccccc
Q 016312 336 GQLCVVCLTRRR------ISAFNP--------CGHLVCCRRCAISVEREASPKCPVCRMT 381 (391)
Q Consensus 336 ~~~C~IC~~~~~------~~v~lp--------CGH~~~C~~C~~~~~~~~~~~CPiCR~~ 381 (391)
...|.||..... .+.++. |||. .|..|......+....||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 358999986655 234566 9999 89999999876555679999864
No 131
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=21 Score=37.09 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=28.1
Q ss_pred cccccccccccce-eEEecCCCccccHHhHHHHhh
Q 016312 336 GQLCVVCLTRRRI-SAFNPCGHLVCCRRCAISVER 369 (391)
Q Consensus 336 ~~~C~IC~~~~~~-~v~lpCGH~~~C~~C~~~~~~ 369 (391)
...|-||.+.... ++.++|||. ||..|......
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~ 103 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLG 103 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhh
Confidence 4589999998874 888999999 89999988653
No 132
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=32.15 E-value=71 Score=21.25 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHH---HHHHHHHHh
Q 016312 18 FDGAVLGVALAYTA---VRSFLDFRY 40 (391)
Q Consensus 18 ~d~~~lG~~~~~~a---~~~~~~~~~ 40 (391)
..|+|||++..-++ +-+|.+||+
T Consensus 6 L~GiVLGlipiTl~GlfvaAylQYrR 31 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVAAWNQYKR 31 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 46788888654333 334555544
No 133
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=30.65 E-value=80 Score=21.01 Aligned_cols=23 Identities=35% Similarity=0.532 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHH---HHHHHHHHh
Q 016312 18 FDGAVLGVALAYTA---VRSFLDFRY 40 (391)
Q Consensus 18 ~d~~~lG~~~~~~a---~~~~~~~~~ 40 (391)
..|+|+|++..-++ +-+|.+||+
T Consensus 6 L~GiVLGlipvTl~GlfvaAylQYrR 31 (37)
T CHL00008 6 LFGIVLGLIPITLAGLFVTAYLQYRR 31 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhh
Confidence 46788888654333 334555543
No 134
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.62 E-value=2e+02 Score=22.17 Aligned_cols=27 Identities=7% Similarity=0.250 Sum_probs=19.9
Q ss_pred HhhhHHhhhhhcCCCCChhhHHHHHhh
Q 016312 39 RYTSNALGKVRNAPQLKVSDLRALLDE 65 (391)
Q Consensus 39 ~~~~~~l~~l~~a~~~~i~~L~~ll~~ 65 (391)
-..+.--+.|++-|.++-..+|-++..
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~q 50 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQ 50 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 334555677899999887888887765
No 135
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=30.41 E-value=73 Score=21.28 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHH---HHHHHHHHh
Q 016312 18 FDGAVLGVALAYTA---VRSFLDFRY 40 (391)
Q Consensus 18 ~d~~~lG~~~~~~a---~~~~~~~~~ 40 (391)
..|+|+|++...++ +.+|.+|++
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay~QY~R 31 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAYLQYRR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 36788887654333 344555543
No 136
>PLN02436 cellulose synthase A
Probab=29.21 E-value=40 Score=38.67 Aligned_cols=50 Identities=28% Similarity=0.697 Sum_probs=33.5
Q ss_pred ccccccccccccce----eEEecCCCc--cccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----SAFNPCGHL--VCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+.|.||-|.--- =.|+.|... -.|..|+.--.+..+..||-|+++..+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 34599999986321 146666522 269999955444556679999998774
No 137
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=39 Score=34.59 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=26.1
Q ss_pred ceeEEecCCCccccHHhHHHHhhcC-CCCccccccc
Q 016312 347 RISAFNPCGHLVCCRRCAISVEREA-SPKCPVCRMT 381 (391)
Q Consensus 347 ~~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~ 381 (391)
-.++.+.|||. |=.+|+..|.-+. ...||.|..+
T Consensus 20 hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 20 HRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred eEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 34677899999 8999999987422 2459999765
No 138
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.97 E-value=68 Score=25.26 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHhhhhhc
Q 016312 19 DGAVLGVALAYTAVRSFLDFRYTSNALGKVRN 50 (391)
Q Consensus 19 d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l~~ 50 (391)
.++++++.+++++++.....++-++.++.++.
T Consensus 2 a~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ 33 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNK 33 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888878888777777777654
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.05 E-value=20 Score=25.59 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q 016312 374 KCPVCRMTVRS 384 (391)
Q Consensus 374 ~CPiCR~~I~~ 384 (391)
.||+|.++++.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999888763
No 140
>PF12669 P12: Virus attachment protein p12 family
Probab=27.65 E-value=65 Score=23.66 Aligned_cols=12 Identities=25% Similarity=0.036 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 016312 21 AVLGVALAYTAV 32 (391)
Q Consensus 21 ~~lG~~~~~~a~ 32 (391)
+|.+++++++++
T Consensus 3 II~~Ii~~~~~~ 14 (58)
T PF12669_consen 3 IIGIIILAAVAY 14 (58)
T ss_pred eHHHHHHHHHHH
Confidence 344444444443
No 141
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=27.51 E-value=6.8 Score=41.06 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=17.9
Q ss_pred cccccccccccceeE-----EecCCCccccHHhHHHHhhc----CCCCccc
Q 016312 336 GQLCVVCLTRRRISA-----FNPCGHLVCCRRCAISVERE----ASPKCPV 377 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v-----~lpCGH~~~C~~C~~~~~~~----~~~~CPi 377 (391)
.+.|.+|-..+.+.+ -+.|..+ .|..|+.++.+. ...+||-
T Consensus 494 ~~~C~kCEq~~vN~~DqElHdLNCsyN-iCPYCanRLs~eGL~RHV~~CPK 543 (645)
T PF07948_consen 494 GQTCIKCEQKPVNAIDQELHDLNCSYN-ICPYCANRLSDEGLVRHVPQCPK 543 (645)
T ss_dssp ----TTT----SSHHHHHHHHHHHTTT---TTT-----TTTHHHHHTT-SH
T ss_pred CceeeeecccccchhhHHHHhcCCCcc-cChhhhhccCccchhhhcccCCc
Confidence 348999998776653 4899999 899999998752 2356874
No 142
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.88 E-value=98 Score=24.83 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 016312 20 GAVLGVALAYTAVRSFLDFR 39 (391)
Q Consensus 20 ~~~lG~~~~~~a~~~~~~~~ 39 (391)
++++|+.+++.|+..|...+
T Consensus 8 ~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666333333
No 143
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.62 E-value=26 Score=21.51 Aligned_cols=21 Identities=29% Similarity=0.816 Sum_probs=9.7
Q ss_pred cHHhHHHHhhcCCCCccccccc
Q 016312 360 CRRCAISVEREASPKCPVCRMT 381 (391)
Q Consensus 360 C~~C~~~~~~~~~~~CPiCR~~ 381 (391)
|-+|...+.. ..+.||.|--.
T Consensus 3 CP~C~~~V~~-~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPE-SAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchh-hcCcCCCCCCC
Confidence 3444444332 23457777543
No 144
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=25.89 E-value=48 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=17.5
Q ss_pred ccHHhHHHHhhcCCCCccccccccc
Q 016312 359 CCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 359 ~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
||.+|+..+.. ..||.|-..+.
T Consensus 31 FC~~C~e~~l~---~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETMLN---GVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHhc---CcCcCCCCccc
Confidence 89999999853 47999977654
No 145
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.72 E-value=40 Score=33.71 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=11.2
Q ss_pred cccccccccccceeE
Q 016312 336 GQLCVVCLTRRRISA 350 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v 350 (391)
+.+|++|-+...-..
T Consensus 15 ~ElCPVCGDkVSGYH 29 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYH 29 (475)
T ss_pred ccccccccCccccce
Confidence 458999998876544
No 146
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=42 Score=25.92 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=15.9
Q ss_pred ccHHhHHHHhhcCCCCcccccccc
Q 016312 359 CCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 359 ~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
||.+|+..... ..||.|-..+
T Consensus 31 FCadCae~~l~---g~CPnCGGel 51 (84)
T COG3813 31 FCADCAENRLH---GLCPNCGGEL 51 (84)
T ss_pred hhHhHHHHhhc---CcCCCCCchh
Confidence 89999986553 5899996554
No 147
>PF15102 TMEM154: TMEM154 protein family
Probab=24.86 E-value=26 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 016312 22 VLGVALAYTAVRSFLDFRYTSN 43 (391)
Q Consensus 22 ~lG~~~~~~a~~~~~~~~~~~~ 43 (391)
||++.|+++++++++.||+++.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4566666777776666655443
No 148
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.75 E-value=74 Score=36.67 Aligned_cols=50 Identities=24% Similarity=0.643 Sum_probs=31.9
Q ss_pred ccccccccccccce----eEEecCCCc--cccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----SAFNPCGHL--VCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+.|.||-|.--- -.|+-|... -.|+.|+.==.+..+..||-|++...+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45699999976321 135555432 169999943333445679999998764
No 149
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.63 E-value=94 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 016312 21 AVLGVALAYTAVRSFLDFRYT 41 (391)
Q Consensus 21 ~~lG~~~~~~a~~~~~~~~~~ 41 (391)
+++.++.+++.++.|-.||++
T Consensus 7 vi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888765
No 150
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=24.40 E-value=1.4e+02 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhHHhh
Q 016312 26 ALAYTAVRSFLDFRYTSNALG 46 (391)
Q Consensus 26 ~~~~~a~~~~~~~~~~~~~l~ 46 (391)
+.++++.+.|+++...++.++
T Consensus 21 ~i~iva~~iYRKw~aRkr~l~ 41 (43)
T PF08114_consen 21 GIGIVALFIYRKWQARKRALQ 41 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666666777766666654
No 151
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.60 E-value=1e+02 Score=26.34 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 016312 19 DGAVLGVALAYTAVRSFLDFR 39 (391)
Q Consensus 19 d~~~lG~~~~~~a~~~~~~~~ 39 (391)
=+||+|+...++|++++..|.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 467788888888888777773
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.99 E-value=71 Score=26.40 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=24.3
Q ss_pred cccccccccccceeEE--------ecC--CCccccHHhHHHHhh--------cCCCCcccccc
Q 016312 336 GQLCVVCLTRRRISAF--------NPC--GHLVCCRRCAISVER--------EASPKCPVCRM 380 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~--------lpC--GH~~~C~~C~~~~~~--------~~~~~CPiCR~ 380 (391)
...|..|.....+... -.| .+..||..|+..-.. ...-.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3456666654443332 233 123489999655321 22335999986
No 153
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.59 E-value=54 Score=32.48 Aligned_cols=43 Identities=23% Similarity=0.479 Sum_probs=28.4
Q ss_pred ccccccccc---cceeEEecCCCccccHHhHHHHhhcC--CCCcccccc
Q 016312 337 QLCVVCLTR---RRISAFNPCGHLVCCRRCAISVEREA--SPKCPVCRM 380 (391)
Q Consensus 337 ~~C~IC~~~---~~~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~ 380 (391)
-.|++=.+. ..-++.+.|||+ .-.+-+..+.+.. .-+||-|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHV-Iskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHV-ISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccce-eeHHHHHHHhhcCcEEeeCCCCCc
Confidence 478884432 234678899999 5667777776532 235999954
No 154
>PLN02400 cellulose synthase
Probab=22.32 E-value=56 Score=37.63 Aligned_cols=49 Identities=31% Similarity=0.803 Sum_probs=31.7
Q ss_pred cccccccccccccee----EEecCCCc--cccHHhHHHHhh-cCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRIS----AFNPCGHL--VCCRRCAISVER-EASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~----v~lpCGH~--~~C~~C~~~~~~-~~~~~CPiCR~~I~~ 384 (391)
..+.|.||-|.---. .|+-|... -.|+.|+ ...+ ..+..||-|++...+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCcccc
Confidence 356999999763211 35555422 1699999 4443 345679999998774
No 155
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.60 E-value=1.4e+02 Score=21.85 Aligned_cols=26 Identities=8% Similarity=0.002 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhc
Q 016312 25 VALAYTAVRSFLDFRYTSNALGKVRN 50 (391)
Q Consensus 25 ~~~~~~a~~~~~~~~~~~~~l~~l~~ 50 (391)
++.++.+++.+..+.+.+.++++++.
T Consensus 30 ~G~llg~l~~~~~~~~~r~~~~~~~k 55 (68)
T PF06305_consen 30 LGALLGWLLSLPSRLRLRRRIRRLRK 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555666666654
No 156
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.51 E-value=2.5e+02 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=17.1
Q ss_pred HHH-HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 016312 9 ASL-YQLAVSFDGAVLGVALAYTAVRSFLDF 38 (391)
Q Consensus 9 ~~~-~~~~l~~d~~~lG~~~~~~a~~~~~~~ 38 (391)
|.+ +=+.||+-.+ +-+.++.++++.|+.|
T Consensus 3 CvLRs~L~~~F~~l-IC~Fl~~~~~F~~F~~ 32 (54)
T PF06716_consen 3 CVLRSYLLLAFGFL-ICLFLFCLVVFIWFVY 32 (54)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344 4555555433 3345567777778877
No 157
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=21.27 E-value=39 Score=27.25 Aligned_cols=38 Identities=24% Similarity=0.623 Sum_probs=26.7
Q ss_pred cccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 336 GQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...|.||....... ||- +|..|+-.- ..|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~-YCq~CAYkk-----GiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAK-YCQTCAYKK-----GICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCc-cChhhhccc-----CcccccCCeecc
Confidence 44899998654332 555 799997553 479999888743
No 158
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=21.00 E-value=30 Score=29.30 Aligned_cols=21 Identities=33% Similarity=1.007 Sum_probs=8.6
Q ss_pred cHHhHHHHhhcCCCCccccccc
Q 016312 360 CRRCAISVEREASPKCPVCRMT 381 (391)
Q Consensus 360 C~~C~~~~~~~~~~~CPiCR~~ 381 (391)
|-.|++...+.....| |||.+
T Consensus 102 CLRCIQ~~esk~GstC-ICRVP 122 (146)
T COG5132 102 CLRCIQPIESKHGSTC-ICRVP 122 (146)
T ss_pred hHhhcCcccccCCCEE-EEeCc
Confidence 4444444433333334 44443
No 159
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=20.59 E-value=45 Score=34.97 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=42.0
Q ss_pred eeeeeEeCCCc---ccchhhhhc----CCceeeeeeeeeeeecCCceeeeeeeeeecCCcceeecCC--CCCeeeccc
Q 016312 190 AYQRLELANVS---PFTFLQAMF----GLKCPIGVLAEEKILPLGKDISAVGICNFKNGIPEIKSCK--DLPYFLSEK 258 (391)
Q Consensus 190 v~~~f~p~~~s---~~~~~~~~~----~g~~~~G~~~~E~~L~~G~~lt~vGl~~~~~g~~rIq~p~--g~pf~Ls~~ 258 (391)
|....+|.+.. -..+-|+|. .|....||++.+.+-+.-.+=|-+++ .+.|..+. |.||||.+.
T Consensus 265 vLkal~p~~~~~~~~~~VrGQY~ag~~~g~~v~gY~eE~gv~~dS~tETFvA~------k~~IdnwRW~GVPFylRtG 336 (483)
T COG0364 265 VLKALRPISEENVKEDTVRGQYTAGEIDGKKVPGYLEEEGVAKDSNTETFVAI------KLEIDNWRWAGVPFYLRTG 336 (483)
T ss_pred HHHhcCCCChhhhhhceeecceeccccCCcccCccccCCCCCCCCCcceeEEE------EEEecCCccCCCCEEEEcC
Confidence 44445555421 123444444 57778999999999998888888885 33444554 889999754
No 160
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=20.41 E-value=2.2e+02 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Q 016312 12 YQLAVSFDGAVLGVALAYTAVRSFLDFRY 40 (391)
Q Consensus 12 ~~~~l~~d~~~lG~~~~~~a~~~~~~~~~ 40 (391)
.-++.++..-++|++.++.++..|..+++
T Consensus 97 ~gi~~Al~tT~~GL~vai~~~~~~~~l~~ 125 (139)
T PF01618_consen 97 GGISVALITTAYGLVVAIPALPFYNYLKR 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888999999999886666644
No 161
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.33 E-value=1.2e+02 Score=20.43 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 016312 20 GAVLGVALAYTAVRSF 35 (391)
Q Consensus 20 ~~~lG~~~~~~a~~~~ 35 (391)
+++.|+.++++.++.|
T Consensus 11 ~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYY 26 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777733
No 162
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.29 E-value=42 Score=20.47 Aligned_cols=9 Identities=56% Similarity=1.254 Sum_probs=7.4
Q ss_pred Ccccccccc
Q 016312 374 KCPVCRMTV 382 (391)
Q Consensus 374 ~CPiCR~~I 382 (391)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 599998776
Done!