Query 016312
Match_columns 391
No_of_seqs 276 out of 1274
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 1.2E-14 4.2E-19 110.1 3.7 55 332-391 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 1.6E-14 5.3E-19 107.9 4.2 55 336-391 7-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.5 2.1E-14 7.1E-19 107.5 4.1 56 335-391 7-64 (64)
4 3t6p_A Baculoviral IAP repeat- 99.4 1.3E-14 4.6E-19 142.9 -2.8 52 335-391 294-345 (345)
5 4ic3_A E3 ubiquitin-protein li 99.4 3.4E-14 1.1E-18 109.4 -0.3 55 332-391 20-74 (74)
6 2yho_A E3 ubiquitin-protein li 99.4 4.7E-14 1.6E-18 110.0 -0.3 55 332-391 14-68 (79)
7 2ecg_A Baculoviral IAP repeat- 99.3 4.1E-14 1.4E-18 109.1 -1.4 54 333-391 22-75 (75)
8 2ysl_A Tripartite motif-contai 99.1 1.3E-10 4.6E-15 88.2 5.2 54 330-384 14-69 (73)
9 2ecy_A TNF receptor-associated 99.0 1.2E-10 4E-15 87.0 3.9 53 331-384 10-62 (66)
10 2d8t_A Dactylidin, ring finger 99.0 1.7E-10 5.8E-15 87.4 4.5 49 334-384 13-61 (71)
11 2ecn_A Ring finger protein 141 99.0 1.2E-10 4E-15 87.9 2.9 57 331-390 10-66 (70)
12 2djb_A Polycomb group ring fin 99.0 2E-10 6.9E-15 87.2 4.2 56 329-386 8-64 (72)
13 2csy_A Zinc finger protein 183 99.0 2.9E-10 1E-14 88.3 5.2 52 331-384 10-61 (81)
14 2yur_A Retinoblastoma-binding 99.0 2.4E-10 8.2E-15 87.4 4.2 55 329-384 8-64 (74)
15 2ea6_A Ring finger protein 4; 99.0 2.3E-10 7.9E-15 85.6 3.8 52 331-384 10-68 (69)
16 2ct2_A Tripartite motif protei 99.0 5.5E-10 1.9E-14 87.7 5.1 54 330-384 9-68 (88)
17 2xeu_A Ring finger protein 4; 98.9 3.4E-10 1.2E-14 83.4 3.3 53 336-390 3-64 (64)
18 1t1h_A Gspef-atpub14, armadill 98.9 5.3E-10 1.8E-14 86.0 4.5 52 332-384 4-55 (78)
19 2egp_A Tripartite motif-contai 98.9 2E-10 6.9E-15 88.4 1.8 54 330-384 6-65 (79)
20 3ztg_A E3 ubiquitin-protein li 98.9 5.7E-10 1.9E-14 88.7 4.5 53 330-383 7-61 (92)
21 4ayc_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 95.9 4.1 50 335-386 52-101 (138)
22 2ecw_A Tripartite motif-contai 98.9 9.4E-10 3.2E-14 85.5 5.0 54 330-384 13-71 (85)
23 3ng2_A RNF4, snurf, ring finge 98.9 3.9E-10 1.3E-14 85.0 2.6 54 334-389 8-70 (71)
24 1e4u_A Transcriptional repress 98.9 3.8E-10 1.3E-14 87.6 2.6 56 332-388 7-66 (78)
25 1chc_A Equine herpes virus-1 r 98.9 5.8E-10 2E-14 83.4 3.3 53 336-390 5-58 (68)
26 2kiz_A E3 ubiquitin-protein li 98.9 1.3E-09 4.4E-14 81.8 4.7 52 333-386 11-65 (69)
27 2ysj_A Tripartite motif-contai 98.9 1.3E-09 4.6E-14 80.3 4.4 48 330-378 14-63 (63)
28 3fl2_A E3 ubiquitin-protein li 98.9 8.4E-10 2.9E-14 92.7 3.6 50 334-384 50-99 (124)
29 1g25_A CDK-activating kinase a 98.9 9.1E-10 3.1E-14 81.8 3.2 48 336-384 3-55 (65)
30 2ecv_A Tripartite motif-contai 98.9 1.1E-09 3.8E-14 85.1 3.8 54 330-384 13-71 (85)
31 2ecm_A Ring finger and CHY zin 98.9 1.3E-09 4.3E-14 78.0 3.6 47 336-384 5-55 (55)
32 3lrq_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 88.7 3.1 52 332-384 18-70 (100)
33 2ecj_A Tripartite motif-contai 98.8 1.9E-09 6.4E-14 77.9 3.9 48 330-378 9-58 (58)
34 2ect_A Ring finger protein 126 98.8 1.8E-09 6.1E-14 83.1 3.5 52 332-385 11-65 (78)
35 2ep4_A Ring finger protein 24; 98.8 1.3E-09 4.5E-14 82.9 2.6 57 330-388 9-68 (74)
36 3l11_A E3 ubiquitin-protein li 98.8 8.1E-10 2.8E-14 91.5 1.3 52 332-384 11-62 (115)
37 1iym_A EL5; ring-H2 finger, ub 98.8 2.8E-09 9.5E-14 76.3 3.4 48 334-383 3-54 (55)
38 1z6u_A NP95-like ring finger p 98.8 2.5E-09 8.6E-14 93.1 3.1 50 334-384 76-125 (150)
39 2l0b_A E3 ubiquitin-protein li 98.8 4.3E-09 1.5E-13 83.7 4.1 49 334-384 38-89 (91)
40 2y1n_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 104.7 4.8 54 335-389 331-384 (389)
41 1x4j_A Ring finger protein 38; 98.8 3.4E-09 1.2E-13 81.0 3.1 49 334-384 21-72 (75)
42 3hct_A TNF receptor-associated 98.7 4.5E-09 1.5E-13 87.6 3.8 53 331-384 13-65 (118)
43 1bor_A Transcription factor PM 98.7 1.3E-09 4.3E-14 79.0 0.2 45 335-384 5-49 (56)
44 2ckl_B Ubiquitin ligase protei 98.7 3.7E-09 1.3E-13 93.2 3.3 52 332-384 50-102 (165)
45 2kr4_A Ubiquitin conjugation f 98.7 9E-09 3.1E-13 81.0 5.0 53 330-384 8-60 (85)
46 1wgm_A Ubiquitin conjugation f 98.7 1.1E-08 3.7E-13 82.7 5.4 53 330-384 16-69 (98)
47 2kre_A Ubiquitin conjugation f 98.7 1.1E-08 3.8E-13 83.0 5.1 53 330-384 23-75 (100)
48 2y43_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 85.3 1.6 50 333-384 19-69 (99)
49 2ckl_A Polycomb group ring fin 98.7 1E-08 3.4E-13 84.0 4.1 50 333-384 12-62 (108)
50 1rmd_A RAG1; V(D)J recombinati 98.7 4.5E-09 1.5E-13 87.1 1.4 50 334-384 21-70 (116)
51 1jm7_A BRCA1, breast cancer ty 98.7 6E-09 2.1E-13 85.5 2.0 49 335-384 20-70 (112)
52 3knv_A TNF receptor-associated 98.6 7.9E-09 2.7E-13 89.1 2.4 50 332-382 27-76 (141)
53 1v87_A Deltex protein 2; ring- 98.6 1.7E-08 5.8E-13 83.2 3.7 47 337-384 26-94 (114)
54 2c2l_A CHIP, carboxy terminus 98.6 3.4E-08 1.2E-12 93.3 4.4 52 332-384 204-255 (281)
55 4ap4_A E3 ubiquitin ligase RNF 98.5 5E-08 1.7E-12 81.8 3.9 48 335-384 6-60 (133)
56 3hcs_A TNF receptor-associated 98.5 6.7E-08 2.3E-12 85.4 3.8 54 330-384 12-65 (170)
57 2f42_A STIP1 homology and U-bo 98.5 9.4E-08 3.2E-12 85.4 4.7 54 330-384 100-153 (179)
58 1jm7_B BARD1, BRCA1-associated 98.5 2.3E-08 7.9E-13 83.1 0.5 47 333-383 19-66 (117)
59 2ecl_A Ring-box protein 2; RNF 98.4 9.7E-08 3.3E-12 74.2 3.6 47 336-384 15-76 (81)
60 4ap4_A E3 ubiquitin ligase RNF 98.4 1.1E-07 3.6E-12 79.8 3.5 55 334-390 70-133 (133)
61 2yu4_A E3 SUMO-protein ligase 98.4 2.8E-07 9.5E-12 73.7 4.6 47 334-381 5-59 (94)
62 3dpl_R Ring-box protein 1; ubi 98.2 5.5E-07 1.9E-11 73.8 3.7 46 336-383 37-100 (106)
63 3htk_C E3 SUMO-protein ligase 98.0 2.6E-06 9E-11 80.0 4.4 50 334-384 179-232 (267)
64 3vk6_A E3 ubiquitin-protein li 97.9 7.8E-06 2.7E-10 65.4 4.8 50 338-388 3-53 (101)
65 4a0k_B E3 ubiquitin-protein li 97.9 1.5E-06 5.1E-11 72.4 0.2 45 337-383 49-111 (117)
66 1wim_A KIAA0161 protein; ring 97.9 3.8E-06 1.3E-10 66.8 1.9 45 336-381 5-61 (94)
67 2d8s_A Cellular modulator of i 97.9 7.4E-06 2.5E-10 63.5 3.3 49 335-384 14-70 (80)
68 2bay_A PRE-mRNA splicing facto 97.4 5.6E-05 1.9E-09 55.4 2.3 46 337-384 4-50 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.7 0.00098 3.3E-08 48.5 3.2 49 335-383 5-58 (60)
70 2ct0_A Non-SMC element 1 homol 96.3 0.0051 1.7E-07 46.7 4.8 49 336-385 15-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0011 3.9E-08 64.4 -0.3 50 334-384 306-373 (381)
72 2i3h_A Baculoviral IAP repeat- 95.6 0.0012 4E-08 55.9 -1.7 61 240-309 47-111 (133)
73 1i4o_C X-linked IAP, baculovir 95.5 0.0017 6E-08 55.4 -0.7 61 240-309 43-107 (141)
74 1jd5_A DIAP1, apoptosis 1 inhi 95.3 0.001 3.5E-08 55.6 -2.9 59 242-309 27-89 (124)
75 2poi_A Baculoviral IAP repeat- 95.2 0.0017 5.9E-08 51.6 -1.8 61 240-309 20-84 (94)
76 2vm5_A Baculoviral IAP repeat- 95.0 0.0016 5.6E-08 52.9 -2.4 62 240-309 20-85 (106)
77 2qra_D XIAP, baculoviral IAP r 94.9 0.0023 7.9E-08 52.4 -1.7 61 240-309 37-101 (111)
78 1se0_A Apoptosis 1 inhibitor; 94.4 0.0043 1.5E-07 51.2 -1.3 59 241-309 15-77 (116)
79 3m1d_A Baculoviral IAP repeat- 94.2 0.0031 1.1E-07 49.2 -2.5 59 242-309 13-75 (85)
80 3mup_A Baculoviral IAP repeat- 94.1 0.0034 1.2E-07 52.3 -2.5 59 242-309 21-83 (122)
81 1g73_C Inhibitors of apoptosis 94.1 0.0052 1.8E-07 51.1 -1.5 57 242-309 29-89 (121)
82 3d9t_A Baculoviral IAP repeat- 94.0 0.0034 1.1E-07 50.2 -2.6 61 240-309 13-77 (97)
83 3hl5_A Baculoviral IAP repeat- 93.3 0.0087 3E-07 47.6 -1.5 57 242-309 15-75 (95)
84 3siq_A Apoptosis 1 inhibitor; 93.2 0.0083 2.8E-07 50.7 -1.7 59 241-309 37-99 (136)
85 2qfa_A Baculoviral IAP repeat- 92.5 0.014 4.8E-07 49.9 -1.3 63 241-309 15-83 (142)
86 2cs3_A Protein C14ORF4, MY039 92.1 0.081 2.8E-06 40.3 2.6 33 336-369 15-51 (93)
87 2jun_A Midline-1; B-BOX, TRIM, 90.5 0.09 3.1E-06 41.5 1.5 31 336-367 3-36 (101)
88 2ko5_A Ring finger protein Z; 88.4 0.18 6.2E-06 39.6 1.8 49 336-388 28-77 (99)
89 3nw0_A Non-structural maintena 81.7 1 3.6E-05 41.4 3.9 49 336-385 180-230 (238)
90 1weo_A Cellulose synthase, cat 57.0 13 0.00043 28.9 4.2 50 335-384 15-70 (93)
91 3m62_A Ubiquitin conjugation f 53.6 9.5 0.00032 41.8 4.2 54 330-384 885-938 (968)
92 2k1k_A Ephrin type-A receptor 42.5 17 0.00059 23.5 2.5 9 32-40 29-37 (38)
93 2ks1_B Epidermal growth factor 40.1 11 0.00037 25.3 1.3 18 14-31 13-30 (44)
94 2l2t_A Receptor tyrosine-prote 39.2 18 0.0006 24.3 2.2 20 14-33 12-31 (44)
95 3i2d_A E3 SUMO-protein ligase 33.5 25 0.00087 34.2 3.3 46 337-383 250-299 (371)
96 2a20_A Regulating synaptic mem 33.0 3.1 0.00011 29.7 -2.4 21 333-357 6-27 (62)
97 1q90_G Cytochrome B6F complex 31.3 49 0.0017 21.1 3.2 14 18-31 6-19 (37)
98 2jwa_A Receptor tyrosine-prote 30.4 33 0.0011 22.9 2.4 7 14-20 14-20 (44)
99 4fo9_A E3 SUMO-protein ligase 29.4 33 0.0011 33.3 3.2 47 336-383 215-265 (360)
100 2jne_A Hypothetical protein YF 27.5 7.8 0.00027 30.5 -1.2 42 337-385 33-74 (101)
101 2zet_C Melanophilin; complex, 27.1 7.1 0.00024 33.4 -1.7 46 335-381 67-117 (153)
102 2xqn_T Testin, TESS; metal-bin 22.6 49 0.0017 26.2 2.7 44 337-384 31-75 (126)
103 1vf5_G Protein PET G; photosyn 21.9 52 0.0018 21.0 2.0 22 18-39 6-30 (37)
104 2wh0_Q Pkcev3, protein kinase 21.7 55 0.0019 19.4 2.0 18 2-19 9-29 (31)
105 2rgt_A Fusion of LIM/homeobox 21.6 59 0.002 27.4 3.1 44 337-384 34-77 (169)
106 2knc_B Integrin beta-3; transm 20.7 1.2E+02 0.0041 22.6 4.3 36 14-49 13-48 (79)
107 3ql9_A Transcriptional regulat 20.7 69 0.0024 26.3 3.2 44 337-381 58-111 (129)
108 1m3v_A FLIN4, fusion of the LI 20.5 56 0.0019 26.0 2.6 45 338-384 34-81 (122)
109 1zbd_B Rabphilin-3A; G protein 20.2 8.7 0.0003 32.0 -2.5 46 335-381 54-107 (134)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=110.13 Aligned_cols=55 Identities=27% Similarity=0.573 Sum_probs=48.9
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
...+...|+||++++++++++||||.++|..|+..+ ..||+||++|..++++|.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhceEEeecC
Confidence 344566999999999999999999999999999875 3899999999999999963
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.48 E-value=1.6e-14 Score=107.86 Aligned_cols=55 Identities=25% Similarity=0.701 Sum_probs=49.8
Q ss_pred cccccccccccceeEEe--cCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 336 GQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
...|+||++++++++++ ||||+++|..|+..++.. ..+||+||++|..++++|.|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence 45899999999999888 999999999999998854 46899999999999999986
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.47 E-value=2.1e-14 Score=107.52 Aligned_cols=56 Identities=30% Similarity=0.723 Sum_probs=50.4
Q ss_pred ccccccccccccceeEEe--cCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 335 DGQLCVVCLTRRRISAFN--PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
++..|+||++++++++++ ||||+++|..|+..+... +..||+||++|..++++|+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence 455899999999999988 999999999999999853 45799999999999999986
No 4
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.38 E-value=1.3e-14 Score=142.87 Aligned_cols=52 Identities=40% Similarity=1.020 Sum_probs=46.4
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
++..|+||++.+.+++++||||.+||..|+..+ ..||+||.+|...+++|.|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeEEeecC
Confidence 345899999999999999999999999999877 3899999999999999986
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.38 E-value=3.4e-14 Score=109.36 Aligned_cols=55 Identities=38% Similarity=0.931 Sum_probs=49.0
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
.+.++..|+||++..++++++||||.+||..|+..+ ..||+||++|...+++|+|
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEeeC
Confidence 344566899999999999999999999999999887 3899999999999999987
No 6
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.36 E-value=4.7e-14 Score=110.03 Aligned_cols=55 Identities=40% Similarity=1.001 Sum_probs=49.3
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
++.+...|+||++..++++++||||.+||..|+..++ .||+||++|...+++|.+
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEEEECBCT
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCeEEEEeC
Confidence 3445568999999999999999999999999998875 899999999999999974
No 7
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-14 Score=109.06 Aligned_cols=54 Identities=39% Similarity=0.982 Sum_probs=48.7
Q ss_pred CCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeeeC
Q 016312 333 IPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYFS 391 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~s 391 (391)
+++...|+||++.+++++++||||.+||..|+..+ ..||+||++|...+++|+|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCcEEEecC
Confidence 34556899999999999999999999999999765 4899999999999999986
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=88.15 Aligned_cols=54 Identities=26% Similarity=0.669 Sum_probs=45.5
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhh--cCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVER--EASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~--~~~~~CPiCR~~I~~ 384 (391)
...+++...|+||++...+++.+||||. ||..|+..+.. .....||+||+++..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3455667799999999999999999999 89999999975 234579999999864
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=87.02 Aligned_cols=53 Identities=25% Similarity=0.561 Sum_probs=45.5
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+++...|+||++...+++.++|||. ||..|+..+.......||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345566799999999999999999999 89999999985445689999999864
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=87.42 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=42.4
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+...|+||++...+++.+||||. ||..|+..+... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 445689999999999999999999 899999998643 4689999999864
No 11
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=87.90 Aligned_cols=57 Identities=23% Similarity=0.619 Sum_probs=47.3
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeee
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~ 390 (391)
....+...|+||++...+ +.+||||. ||..|+..+.. ....||+||.++.....+|.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSD-RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSC-CCSSCHHHHHCTTCCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHH-CcCcCCCcCCcccCCCcccc
Confidence 344556799999999999 89999999 89999999864 45689999999988766553
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=87.25 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=47.1
Q ss_pred ccCCCCccccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 329 VAGDIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 329 ~~~~~~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
+.+++++...|+||++...+++.+ +|||. ||..|+..+... ...||+||.++....
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 445567778999999999999987 99999 899999998753 468999999987643
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=88.32 Aligned_cols=52 Identities=21% Similarity=0.539 Sum_probs=44.2
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+.++...|+||++...+++.+||||. ||..|+..+... ...||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHC-CCcCCCcCccccc
Confidence 344556689999999999999999999 899999998753 4679999999864
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=87.43 Aligned_cols=55 Identities=29% Similarity=0.631 Sum_probs=46.1
Q ss_pred ccCCCCccccccccccccceeEEec-CCCccccHHhHHHHhhcC-CCCcccccccccc
Q 016312 329 VAGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-SPKCPVCRMTVRS 384 (391)
Q Consensus 329 ~~~~~~~~~~C~IC~~~~~~~v~lp-CGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 384 (391)
+..++++...|+||++...+++.+| |||. ||..|+..+.... ...||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4556677789999999999999999 9999 8999999998643 2579999998543
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=85.60 Aligned_cols=52 Identities=21% Similarity=0.571 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccee-------EEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 331 GDIPDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....+...|+||++...++ +.++|||. ||..|+..+... ...||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3445567899999998876 89999998 899999998754 4689999999864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.5e-10 Score=87.66 Aligned_cols=54 Identities=22% Similarity=0.578 Sum_probs=44.7
Q ss_pred cCCCCccccccccccccce----eEEecCCCccccHHhHHHHhhcC--CCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~----~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~ 384 (391)
.+.+.+...|+||++...+ ++.+||||. ||..|+..+.... ...||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3445566799999999998 999999999 8999999997643 4679999998753
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.94 E-value=3.4e-10 Score=83.35 Aligned_cols=53 Identities=25% Similarity=0.642 Sum_probs=44.6
Q ss_pred ccccccccccccee-------EEecCCCccccHHhHHHHhhcCCCCccccccccc--ceEEeee
Q 016312 336 GQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR--SSMRIYF 390 (391)
Q Consensus 336 ~~~C~IC~~~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~--~~~~iy~ 390 (391)
...|+||++...++ +.++|||. ||..|+..+... ...||+||.++. .+.++|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHc-CCCCCCCCccCCccceeeeeC
Confidence 45899999988775 88999999 899999998754 568999999988 4677764
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.94 E-value=5.3e-10 Score=86.05 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=45.5
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+.++...|+||++...+++.+||||. ||..|+..+.......||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 34567799999999999999999999 89999999986546789999999864
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=2e-10 Score=88.44 Aligned_cols=54 Identities=30% Similarity=0.696 Sum_probs=45.0
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcC------CCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA------SPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~------~~~CPiCR~~I~~ 384 (391)
.+.+++...|+||++...+++.+||||. ||..|+..+.... ...||+||.++..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3445667799999999999999999999 8999999887532 4679999999864
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.93 E-value=5.7e-10 Score=88.65 Aligned_cols=53 Identities=28% Similarity=0.652 Sum_probs=44.9
Q ss_pred cCCCCccccccccccccceeEEec-CCCccccHHhHHHHhhcC-CCCccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-SPKCPVCRMTVR 383 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lp-CGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~ 383 (391)
...+++...|+||++...+++.+| |||. ||..|+..++... ...||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 445667789999999999999999 9999 8999999987532 358999999973
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.92 E-value=5.3e-10 Score=95.88 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=43.1
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
++..|+||++...+++.+||||. ||..|+..+... ...||+||.+|....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 34579999999999999999998 899999998753 467999999997653
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=9.4e-10 Score=85.48 Aligned_cols=54 Identities=26% Similarity=0.537 Sum_probs=45.5
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcC-----CCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA-----SPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~-----~~~CPiCR~~I~~ 384 (391)
.+.+.+...|+||++...+++.+||||. ||..|+..+.... ...||+||.++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3445666799999999999999999999 8999999987642 5679999999874
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.91 E-value=3.9e-10 Score=84.99 Aligned_cols=54 Identities=24% Similarity=0.642 Sum_probs=44.5
Q ss_pred Ccccccccccccccee-------EEecCCCccccHHhHHHHhhcCCCCcccccccccc--eEEee
Q 016312 334 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIY 389 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~~iy 389 (391)
++...|+||++...++ +.++|||. ||..|+..+... ...||+||.++.. +.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 3456899999998886 89999999 899999998754 3689999999874 45655
No 24
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91 E-value=3.8e-10 Score=87.57 Aligned_cols=56 Identities=25% Similarity=0.546 Sum_probs=44.7
Q ss_pred CCCcccccccccccc--ceeEEec--CCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 332 DIPDGQLCVVCLTRR--RISAFNP--CGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~--~~~v~lp--CGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
.++++..|+||++.. .++.++| |||. ||..|+..++......||+||+++......
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 345667899999977 4566776 9999 899999999865567899999999865433
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.90 E-value=5.8e-10 Score=83.45 Aligned_cols=53 Identities=28% Similarity=0.635 Sum_probs=44.7
Q ss_pred ccccccccccccee-EEecCCCccccHHhHHHHhhcCCCCcccccccccceEEeee
Q 016312 336 GQLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIYF 390 (391)
Q Consensus 336 ~~~C~IC~~~~~~~-v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy~ 390 (391)
...|+||++...++ +.+||||. ||..|+..+... ...||+||+++...++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQ-NPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHH-SCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhC-cCcCcCCChhhHhhhhccc
Confidence 45899999999884 88999999 899999998753 3689999999998766543
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=81.84 Aligned_cols=52 Identities=25% Similarity=0.548 Sum_probs=41.8
Q ss_pred CCcccccccccccc---ceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceE
Q 016312 333 IPDGQLCVVCLTRR---RISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSM 386 (391)
Q Consensus 333 ~~~~~~C~IC~~~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 386 (391)
.++...|+||++.. ..++.+||||. ||..|+..|... ...||+||.+|....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 34456899998765 46788999999 899999998754 357999999988654
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=80.34 Aligned_cols=48 Identities=25% Similarity=0.690 Sum_probs=40.9
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhc--CCCCcccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC 378 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiC 378 (391)
.+.+++...|+||++...+++.+||||. ||..|+..+... ...+||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 3455667799999999999999999999 899999999863 34579998
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.87 E-value=8.4e-10 Score=92.75 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=44.1
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
++...|+||++...+++.+||||. ||..|+..++......||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 445689999999999999999999 89999999987555689999999875
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=9.1e-10 Score=81.82 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=39.9
Q ss_pred ccccccccc-cccee----EEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 336 GQLCVVCLT-RRRIS----AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~-~~~~~----v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+..|+||++ ...++ +.++|||. ||..|+..+.......||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 458999999 66665 57899999 89999999976555679999999874
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=85.06 Aligned_cols=54 Identities=24% Similarity=0.648 Sum_probs=45.2
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhc-----CCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE-----ASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~-----~~~~CPiCR~~I~~ 384 (391)
...+.+...|+||++...+++.+||||. ||..|+..+... ....||+||..+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3445667799999999999999999999 899999998653 25679999999874
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=1.3e-09 Score=78.00 Aligned_cols=47 Identities=30% Similarity=0.685 Sum_probs=39.8
Q ss_pred cccccccccccce----eEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 336 GQLCVVCLTRRRI----SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...|+||++...+ ++.+||||. ||..|+..+.... ..||+||+++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~-~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEG-YRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHT-CCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcC-CcCCCCCCcCCC
Confidence 4589999998765 889999998 8999999997643 689999998763
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=88.66 Aligned_cols=52 Identities=27% Similarity=0.691 Sum_probs=44.7
Q ss_pred CCCccccccccccccceeEE-ecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~-lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+.+...|+||++.+.+++. ++|||. ||..|+..+.......||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34456689999999999999 999999 89999999987544689999999864
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=77.88 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=40.2
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhc--CCCCcccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVERE--ASPKCPVC 378 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiC 378 (391)
.+.+.+...|+||++...+++.+||||. ||..|+..+... ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 3445566799999999999999999999 899999999643 45679998
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.82 E-value=1.8e-09 Score=83.07 Aligned_cols=52 Identities=27% Similarity=0.599 Sum_probs=41.2
Q ss_pred CCCccccccccccccc---eeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 332 DIPDGQLCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
...+...|+||++... ....+||||. ||..|+..|... ...||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 4455669999987764 4467899999 899999999753 46899999998753
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=82.93 Aligned_cols=57 Identities=28% Similarity=0.595 Sum_probs=44.2
Q ss_pred cCCCCccccccccccccce---eEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 330 AGDIPDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
..+..+...|.||++...+ ...+||||. ||..|+..|... ...||+||.++....++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEV-RKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHH-CSBCTTTCCBCSSCCSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHc-CCcCCCcCccccccccc
Confidence 3445556799999998653 456699999 899999998764 35899999999876543
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.80 E-value=8.1e-10 Score=91.54 Aligned_cols=52 Identities=31% Similarity=0.552 Sum_probs=44.5
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...++..|+||++...+++.+||||. ||..|+..+.......||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34456799999999999999999999 89999999876545689999999863
No 37
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=2.8e-09 Score=76.26 Aligned_cols=48 Identities=38% Similarity=0.736 Sum_probs=39.6
Q ss_pred Cccccccccccccce---eEEec-CCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 334 PDGQLCVVCLTRRRI---SAFNP-CGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~---~v~lp-CGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
++...|.||++...+ +..+| |||. ||..|+..|... ...||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 345589999998877 77887 9999 899999998753 568999999864
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.76 E-value=2.5e-09 Score=93.15 Aligned_cols=50 Identities=22% Similarity=0.504 Sum_probs=43.9
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
++...|+||++...+++.+||||. ||..|+..+.......||+||.++..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 345689999999999999999999 89999999987545589999999875
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.76 E-value=4.3e-09 Score=83.74 Aligned_cols=49 Identities=24% Similarity=0.516 Sum_probs=40.9
Q ss_pred Cccccccccccccce---eEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRI---SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+...|.||++...+ ++.+||||. ||..|+..|... ...||+||.++..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 445689999988766 888999998 899999998753 4689999998864
No 40
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=4.1e-09 Score=104.70 Aligned_cols=54 Identities=31% Similarity=0.757 Sum_probs=46.6
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEee
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRIY 389 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~iy 389 (391)
....|+||++...+++.+||||. ||..|+..+.......||+||+++.....++
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 34689999999999999999999 7999999887544578999999999876654
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=80.97 Aligned_cols=49 Identities=27% Similarity=0.638 Sum_probs=40.1
Q ss_pred Ccccccccccccccee---EEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRIS---AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~---v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+...|+||++...+. ..+||||. ||..|+..|... ...||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 3456899999876554 78999999 899999998754 4689999998864
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.74 E-value=4.5e-09 Score=87.57 Aligned_cols=53 Identities=32% Similarity=0.651 Sum_probs=45.9
Q ss_pred CCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 331 GDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 331 ~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+++...|+||++...+++.++|||. ||..|+..+.......||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 355667799999999999999999999 89999999876544589999999875
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.3e-09 Score=78.97 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=38.6
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+...|+||++...+++.+||||. ||..|+... ...||+||+++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccC----CCCCCcCCcEeec
Confidence 35589999999999999999999 899998763 3579999998763
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.73 E-value=3.7e-09 Score=93.16 Aligned_cols=52 Identities=27% Similarity=0.661 Sum_probs=44.6
Q ss_pred CCCccccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+.+...|+||++...+++.+ ||||. ||..|+..+.......||+||.++..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 445567999999999999987 99999 89999999987546789999999853
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.73 E-value=9e-09 Score=80.99 Aligned_cols=53 Identities=21% Similarity=0.115 Sum_probs=46.3
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....++...|+||++-.++++.+||||. ||..|+..++.. ...||+||.++..
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hhcCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 3456677899999999999999999999 899999999874 4689999998764
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=1.1e-08 Score=82.75 Aligned_cols=53 Identities=15% Similarity=-0.039 Sum_probs=46.3
Q ss_pred cCCCCccccccccccccceeEEecCC-CccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCG-H~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...+++...|+||++-.++++.+||| |. ||..|+..++.. ...||+||.++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 34567778999999999999999999 99 899999999864 5689999999764
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.71 E-value=1.1e-08 Score=83.00 Aligned_cols=53 Identities=23% Similarity=0.140 Sum_probs=46.6
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....++...|+||++..++++.+||||. ||..|+..++.. ...||+||.++..
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 4456777899999999999999999999 899999999863 5789999999764
No 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.69 E-value=3.6e-09 Score=85.27 Aligned_cols=50 Identities=28% Similarity=0.574 Sum_probs=43.0
Q ss_pred CCccccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 333 IPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+++...|+||++...+++.+ ||||. ||..|+..+... ...||+||.++..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 34556899999999999988 99999 899999998753 4689999999874
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.68 E-value=1e-08 Score=83.99 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=43.4
Q ss_pred CCccccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 333 IPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+++...|+||++...+++.+ ||||. ||..|+..+... ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHh-CCcCcCCCccccc
Confidence 45567899999999999998 99999 899999998753 4689999999875
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.66 E-value=4.5e-09 Score=87.14 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=43.8
Q ss_pred CccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.+...|+||++...+++.+||||. ||..|+..+.......||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345689999999999999999999 89999999986545689999999874
No 51
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=6e-09 Score=85.48 Aligned_cols=49 Identities=20% Similarity=0.653 Sum_probs=41.8
Q ss_pred ccccccccccccceeEEecCCCccccHHhHHHHhhcC--CCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREA--SPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~ 384 (391)
+...|+||++...+++.+||||. ||..|+..+.... ...||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34589999999999999999999 8999999998642 2479999998874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.64 E-value=7.9e-09 Score=89.07 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=44.0
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTV 382 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 382 (391)
.+++...|+||++...+++.++|||. ||..|+..+.......||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45667799999999999999999999 899999999865555899999975
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.61 E-value=1.7e-08 Score=83.23 Aligned_cols=47 Identities=19% Similarity=0.638 Sum_probs=38.0
Q ss_pred cccccccccccee------------------EEecCCCccccHHhHHHHhh----cCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVER----EASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~------------------v~lpCGH~~~C~~C~~~~~~----~~~~~CPiCR~~I~~ 384 (391)
..|+||++...+. .++||||. ||..|+..|.. .....||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4899999987543 38899999 89999999974 234579999998764
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=3.4e-08 Score=93.28 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=45.2
Q ss_pred CCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 332 DIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 332 ~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+.++...|+||++.+.+|+.+||||. ||..|+..++......||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44567799999999999999999999 89999999987544559999999864
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.51 E-value=5e-08 Score=81.85 Aligned_cols=48 Identities=23% Similarity=0.666 Sum_probs=41.5
Q ss_pred cccccccccccccee-------EEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+...|+||++...++ +.++|||. ||..|+..+... ...||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 456899999999887 99999999 899999999753 4589999999874
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=6.7e-08 Score=85.38 Aligned_cols=54 Identities=31% Similarity=0.637 Sum_probs=46.5
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
...+++...|+||++...+++.++|||. ||..|+..+......+||+||.++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456677899999999999999999999 89999999876444589999999875
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.47 E-value=9.4e-08 Score=85.43 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=46.8
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
....++...|+||++-+.+|+.+||||. ||..|+..++......||+||.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4556778899999999999999999999 89999999987543469999998764
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=2.3e-08 Score=83.10 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=41.5
Q ss_pred CCccccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 333 IPDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 333 ~~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
+.+...|+||++...+++.+ ||||. ||..|+..+.. ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT---TBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc---CCCcCCCCcCc
Confidence 34566899999999999999 99999 89999999874 57999999985
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=9.7e-08 Score=74.20 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=35.9
Q ss_pred cccccccccccce--------------eEEe-cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 336 GQLCVVCLTRRRI--------------SAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 336 ~~~C~IC~~~~~~--------------~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
+..|.||++...+ ++.+ +|||. |+..|+..+... ...||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHh-CCCCCCcCCCcch
Confidence 3468888877754 4444 59999 899999998754 4589999998753
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.42 E-value=1.1e-07 Score=79.81 Aligned_cols=55 Identities=24% Similarity=0.637 Sum_probs=45.6
Q ss_pred Ccccccccccccccee-------EEecCCCccccHHhHHHHhhcCCCCcccccccccc--eEEeee
Q 016312 334 PDGQLCVVCLTRRRIS-------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS--SMRIYF 390 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~~iy~ 390 (391)
++...|+||++...++ +.++|||. ||..|+..+... .+.||+||.++.. +.++|.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHc-CCCCCCCCCcCChhcceeeeC
Confidence 4456899999988775 89999999 899999998754 4689999999874 577773
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=2.8e-07 Score=73.68 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=40.1
Q ss_pred CccccccccccccceeEEec-CCCccccHHhHHHHhhcC-----CCCccc--cccc
Q 016312 334 PDGQLCVVCLTRRRISAFNP-CGHLVCCRRCAISVEREA-----SPKCPV--CRMT 381 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~lp-CGH~~~C~~C~~~~~~~~-----~~~CPi--CR~~ 381 (391)
.+...|+||++.+.+++.+| |||. ||..|+..++... ...||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45668999999999999996 9999 8999999998642 357999 9855
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.24 E-value=5.5e-07 Score=73.76 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=36.9
Q ss_pred cccccccccccce------------------eEEecCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 336 GQLCVVCLTRRRI------------------SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 336 ~~~C~IC~~~~~~------------------~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
...|.||++...+ .+.++|||. |+..|+..+... ...||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHc-CCcCcCCCCcce
Confidence 3479999887654 366899999 899999998754 567999999864
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.04 E-value=2.6e-06 Score=80.01 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=41.9
Q ss_pred CccccccccccccceeEEe-cCCCccccHHhHHHHhhcC-CCCccc--ccccccc
Q 016312 334 PDGQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREA-SPKCPV--CRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~-~~~CPi--CR~~I~~ 384 (391)
.....|+||++.++++|.. .|||. ||..|+..++... ...||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3456999999999999985 99999 8999999998642 346999 9998753
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.95 E-value=7.8e-06 Score=65.40 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=40.1
Q ss_pred cccccccccce-eEEecCCCccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 338 LCVVCLTRRRI-SAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 338 ~C~IC~~~~~~-~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
-|.+|--.... ..++||.|+ ||.+|+..+..+..+.||+|+.+|.++-.+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 47777766544 457899998 999999998766677899999999987654
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.92 E-value=1.5e-06 Score=72.40 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=0.0
Q ss_pred cccccccccccee------------------EEecCCCccccHHhHHHHhhcCCCCccccccccc
Q 016312 337 QLCVVCLTRRRIS------------------AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVR 383 (391)
Q Consensus 337 ~~C~IC~~~~~~~------------------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 383 (391)
..|.||++...+. +.++|+|. |+..|+..+... ...||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4899999887652 33699999 899999998753 457999999854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=3.8e-06 Score=66.80 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=35.2
Q ss_pred cccccccccccceeEE---ecCCCccccHHhHHHHhhc-------CCCCccc--cccc
Q 016312 336 GQLCVVCLTRRRISAF---NPCGHLVCCRRCAISVERE-------ASPKCPV--CRMT 381 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~---lpCGH~~~C~~C~~~~~~~-------~~~~CPi--CR~~ 381 (391)
...|.||++......+ .+|||. ||..|....+.. ...+||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4589999998765433 379999 899999998752 1347999 9988
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=7.4e-06 Score=63.54 Aligned_cols=49 Identities=16% Similarity=0.525 Sum_probs=38.5
Q ss_pred cccccccccccc--ceeEEecCC-----CccccHHhHHHHhhcC-CCCcccccccccc
Q 016312 335 DGQLCVVCLTRR--RISAFNPCG-----HLVCCRRCAISVEREA-SPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~--~~~v~lpCG-----H~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 384 (391)
+...|.||++.. .+.+++||. |. |...|+.+|.... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345899999765 456789996 99 7999999997643 2579999999864
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.42 E-value=5.6e-05 Score=55.40 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=40.5
Q ss_pred ccccccccccceeEEe-cCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..|+||++...+++.. +|||. ||..|+.++... +.+||++++++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 4799999999999999 99999 899999999864 3569999998754
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.70 E-value=0.00098 Score=48.53 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=37.2
Q ss_pred ccccccccccccceeEEecCCCc----cccHHhHHHHhhc-CCCCccccccccc
Q 016312 335 DGQLCVVCLTRRRISAFNPCGHL----VCCRRCAISVERE-ASPKCPVCRMTVR 383 (391)
Q Consensus 335 ~~~~C~IC~~~~~~~v~lpCGH~----~~C~~C~~~~~~~-~~~~CPiCR~~I~ 383 (391)
+...|.||++...+..++||.+. .+=..|+.+|... .+..||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34589999988777778997642 2567999999753 3568999999875
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.26 E-value=0.0051 Score=46.69 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=37.3
Q ss_pred cccccccccccceeEE-ecCCCccccHHhHHHHhhcC-CCCcccccccccce
Q 016312 336 GQLCVVCLTRRRISAF-NPCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSS 385 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~-lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~~ 385 (391)
...|.||++....-.. ..|+|. |=..|+.+|.+.. ..+||+||++....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 3589999987754332 389999 7889999998643 36799999987653
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.93 E-value=0.0011 Score=64.38 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=37.1
Q ss_pred Cccccccccccccce--------eEEecCCCccccHHhHHHHhhcC----------CCCcccccccccc
Q 016312 334 PDGQLCVVCLTRRRI--------SAFNPCGHLVCCRRCAISVEREA----------SPKCPVCRMTVRS 384 (391)
Q Consensus 334 ~~~~~C~IC~~~~~~--------~v~lpCGH~~~C~~C~~~~~~~~----------~~~CPiCR~~I~~ 384 (391)
+....|.||++...+ +.-.+|||. |-..|...|.+.. ...||.||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345589999987665 123479999 7889999987521 1469999999875
No 72
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=95.55 E-value=0.0012 Score=55.87 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
+-..||+++.+||+.... + .++|+.+ +|+|.+ .++.+.|+.|...+++|.. |.+|++++|+
T Consensus 47 ~e~~RL~SF~~WP~~~~~-~----pe~LA~A--GFYYtg--~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~ 111 (133)
T 2i3h_A 47 SEELRLASFYDWPLTAEV-P----PELLAAA--GFFHTG--HQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPG 111 (133)
T ss_dssp CHHHHHHTTTTCSCTTTS-C----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCcCC-C----HHHHHHc--CCCCcC--CCCEEEecccCCEeCCCCCCCCHHHHHHHHCcC
Confidence 446789999999973222 2 2567777 899988 6889999999999999985 9999999774
No 73
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=95.51 E-value=0.0017 Score=55.38 Aligned_cols=61 Identities=16% Similarity=0.415 Sum_probs=49.1
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
.-..||+++.+||+-.... .++|+.+ +|+|.+ .++.+.|+.|...+++|.. |.+|++++++
T Consensus 43 ~e~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyY~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~ 107 (141)
T 1i4o_C 43 SEEARLKSFQNWPDYAHLT-----PRELASA--GLYYTG--IGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPN 107 (141)
T ss_pred CHHHHHHHHhcCCCCccCC-----HHHHHHc--CCcCcC--CCCEEEeccCCCEecCCCCCCCHHHHHHHHCcC
Confidence 3467899999999753222 2567777 899998 6899999999999999985 9999999774
No 74
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=95.29 E-value=0.001 Score=55.63 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=47.9
Q ss_pred cceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..||+++.+||+-.... .++|+.+ +|+|.+ .++.+.|+.|...+++|.. |.+|++++++
T Consensus 27 ~~Rl~TF~~WP~~~~~~-----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~ 89 (124)
T 1jd5_A 27 TARLRTFEAWPRNLKQK-----PHQLAEA--GFFYTG--VGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQ 89 (124)
T ss_dssp HHHHHHGGGCCTTCSSC-----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHhhCCCCccCC-----HHHHHHc--CCCCcC--CCCEEEecCCCCEecCCCCCCCHHHHHHHHCcC
Confidence 57889999999753222 2567777 899998 6889999999999999985 9999999773
No 75
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=95.16 E-value=0.0017 Score=51.63 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
.-..||+++.+||+-.. .+ .++|+.+ +|+|.+ .++.+.|+.|...+++|+. |.+|++++++
T Consensus 20 ~e~~Rl~TF~~WP~~~~-~~----p~~LA~A--GFyytg--~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~ 84 (94)
T 2poi_A 20 EEFNRLKTFANFPSGSP-VS----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPN 84 (94)
T ss_dssp SHHHHHGGGTTCCTTSS-SC----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCcc-CC----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCcc
Confidence 33578999999996322 22 2566777 899998 5889999999999999985 9999999663
No 76
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=94.99 E-value=0.0016 Score=52.93 Aligned_cols=62 Identities=13% Similarity=0.330 Sum_probs=49.0
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
+-..||+++.+||+-....+ ..+|+.+ +|+|.+ .++.+.|+.|...+++|.. |.+|+++++.
T Consensus 20 ~~~~Rl~TF~~WP~~~~~~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~ 85 (106)
T 2vm5_A 20 EEEARLASFRNWPFYVQGIS----PCVLSEA--GFVFTG--KQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPK 85 (106)
T ss_dssp SHHHHHHGGGGCCGGGTTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCcccCC----HHHHHHc--CCCCcC--CCCEEEccccCCEecCCCCCCCHHHHHHHHCcC
Confidence 44678999999997543122 2556777 899987 6888999999999999985 9999999874
No 77
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=94.93 E-value=0.0023 Score=52.41 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=48.1
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
....||+++.+||+-.. .+ .++|+.+ +|+|.+ .++.+.|+.|...+++|+. |.+|++++++
T Consensus 37 ~e~~RL~TF~~WP~~~~-~~----p~~LA~A--GFyYtg--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~ 101 (111)
T 2qra_D 37 EEFNRLKTFANFPSGSP-VS----ASTLARA--GFLYTG--EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPN 101 (111)
T ss_dssp SHHHHHHTTTTCCTTCS-SC----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCCcc-CC----HHHHHHc--CCCCcC--CCCEEEcccCCCEeCCCCCCCCHHHHHHHHCcc
Confidence 34678999999996322 22 2567777 899998 6889999999999999985 9999999663
No 78
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=94.39 E-value=0.0043 Score=51.25 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=48.2
Q ss_pred CcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 241 GIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 241 g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
-..|++++.+||+ +..+ .++|+.+ +|+|.+ .++.+.|+.|...++.|.. |++|+++++.
T Consensus 15 e~~Rl~TF~~WP~--~~~~----~~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~ 77 (116)
T 1se0_A 15 EETRLKTFTDWPL--DWLD----KRQLAQT--GMYFTH--AGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPN 77 (116)
T ss_dssp HHHHHTTCTTCCC--TTSC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHHhhCCC--CcCC----HHHHHHc--CCcCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHHCcc
Confidence 3578999999997 3333 3567777 899988 7889999999999999985 9999999774
No 79
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=94.20 E-value=0.0031 Score=49.22 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=46.8
Q ss_pred cceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..|++++.+||+-.. .+ .++|+.+ +|+|.+ .++.+.|+.|...+..|.. |.+|+++++.
T Consensus 13 ~~Rl~TF~~WP~~~~-~~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~ 75 (85)
T 3m1d_A 13 LYRMSTYSTFPAGVP-VS----ERSLARA--GFYYTG--VNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPS 75 (85)
T ss_dssp HHHHHGGGGCCTTCS-SC----HHHHHHT--TEEECS--STTCEEETTTCCEECSCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCCCc-CC----HHHHHHC--CCeEeC--CCCEEEeCCcCCEecCCCCCCCHHHHHHHHCcc
Confidence 578899999996432 22 2556777 899988 6889999999999999975 9999999663
No 80
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=94.13 E-value=0.0034 Score=52.32 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=47.3
Q ss_pred cceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..|++++.+||+.....+ ++|+.+ +|+|.+ .++.+.|+.|...+..|.. |.+|++++|+
T Consensus 21 ~~Rl~TF~~WP~~~~~~p-----~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~ 83 (122)
T 3mup_A 21 AARMRTFMYWPSSVPVQP-----EQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPR 83 (122)
T ss_dssp HHHHHGGGGCCTTCSSCH-----HHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCcccCCH-----HHHHHC--CCeEeC--CCCeEEecCcCCEecCCCCCCCHHHHHHHHCcC
Confidence 568999999996532222 456777 899987 6889999999999999975 9999999773
No 81
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=94.07 E-value=0.0052 Score=51.11 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=46.7
Q ss_pred cceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..||+++.+||+- .+ ..+|+.+ +|+|.+ .++.+.|++|...+++|.. |++|++++++
T Consensus 29 ~~Rl~TF~~Wp~~---~~----p~~LA~A--GFyy~g--~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~ 89 (121)
T 1g73_C 29 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPG 89 (121)
T ss_dssp HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEEESCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHccCCCC---CC----HHHHHHc--CCCCcC--CCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcC
Confidence 5788999999864 22 2456777 899987 7888999999999999985 9999999773
No 82
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=94.04 E-value=0.0034 Score=50.24 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 240 NGIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 240 ~g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
+-..|++++.+||+-.. .+ .++|+.+ +|+|.+ .++.+.|+.|...++.|.. |++|++++|.
T Consensus 13 ~~~~Rl~TF~~Wp~~~~-~~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~ 77 (97)
T 3d9t_A 13 THAARMRTFMYWPSSVP-VQ----PEQLASA--GFYYVG--RNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPR 77 (97)
T ss_dssp SHHHHHHGGGGCCTTSS-SC----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCCCccc-CC----HHHHHHc--CCCCcC--CCCEEEecCcCCEecCCCCCCCHHHHHHHhCcc
Confidence 33578899999986422 22 2566777 899987 5788999999999999985 9999999773
No 83
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=93.26 E-value=0.0087 Score=47.64 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=46.7
Q ss_pred cceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 242 IPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 242 ~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
..|++++.+||+- .+ .++|+.+ +|+|.+ .++.+.|+.|...++.|.. |.+|++++++
T Consensus 15 ~~Rl~TF~~Wp~~---~~----~~~LA~A--GFyy~g--~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~ 75 (95)
T 3hl5_A 15 EARIFTFGTWIYS---VN----KEQLARA--GFYALG--EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPG 75 (95)
T ss_dssp HHHHHTTTTCCSS---SC----HHHHHHT--TEEECS--STTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHcCCCCC---CC----HHHHHhC--CCeEcC--CCCeEEecCCCCCccCcCCCCCHHHHHHHHCcC
Confidence 5788999999864 22 2556777 899987 7889999999999999985 9999999774
No 84
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=93.21 E-value=0.0083 Score=50.73 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=48.0
Q ss_pred CcceeecCCCCCeeecccCHHHHHHHHhhhhhhhhhhhccccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 241 GIPEIKSCKDLPYFLSEKTKDQMVVDLVNRSKILFWSGIVLGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 241 g~~rIq~p~g~pf~Ls~~s~d~Li~~L~~~~r~~~~~~iv~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
...|++++.+||+- ..+ .++|+.+ +|+|.+ .++.+.|+.|...++.|+. |.+|++++++
T Consensus 37 e~~RL~TF~~WP~~--~~~----p~~LA~A--GFYYtG--~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~ 99 (136)
T 3siq_A 37 EETRLKTFTDWPLD--WLD----KRQLAQT--GMYFTH--AGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPN 99 (136)
T ss_dssp HHHHHHTTTTCCCT--TSC----HHHHHHT--TEEECS--STTCEEETTTCCEEECCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHHccCCCC--cCC----HHHHHHC--CCeEcC--CCCeEEEeccCCEecCCCCCCCHHHHHHHHCcC
Confidence 36789999999973 223 2556776 899987 7889999999999999986 9999999774
No 85
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=92.55 E-value=0.014 Score=49.88 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=47.8
Q ss_pred CcceeecCCCCCeeec-ccCHHHHHHHHhhhhhhhhhhhcc-ccceeeeeehhhhhhhhHH----HHHHHHHhhH
Q 016312 241 GIPEIKSCKDLPYFLS-EKTKDQMVVDLVNRSKILFWSGIV-LGSLSIGILGYAIVRNWNR----WKDRQQRMSR 309 (391)
Q Consensus 241 g~~rIq~p~g~pf~Ls-~~s~d~Li~~L~~~~r~~~~~~iv-~g~~gv~ll~~~~lr~w~~----~k~~~~~~~~ 309 (391)
-..|++++.+||+-.. ..+. ++|+.+ +|+|.+.. ..+.+.|++|...++.|.. |.+|++++++
T Consensus 15 ~~~Rl~TF~~WP~~~~~~~~p----~~LA~A--GFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~ 83 (142)
T 2qfa_A 15 KDHRISTFKNWPFLEGCACTP----ERMAEA--GFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSG 83 (142)
T ss_dssp HHHHHHTCCSCSCCSSCSSCH----HHHHHT--TEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCccCCcCCCH----HHHHHc--CCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcC
Confidence 3578899999997542 1222 456666 89998832 2388999999999999985 9999999774
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.11 E-value=0.081 Score=40.33 Aligned_cols=33 Identities=24% Similarity=0.562 Sum_probs=28.8
Q ss_pred cccccccccccceeEEecC----CCccccHHhHHHHhh
Q 016312 336 GQLCVVCLTRRRISAFNPC----GHLVCCRRCAISVER 369 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpC----GH~~~C~~C~~~~~~ 369 (391)
...|.+|.++.-+..|+.| +|. ||..|.....+
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk 51 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 51 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccHHHHH
Confidence 4589999999999999999 588 89999988654
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.46 E-value=0.09 Score=41.49 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=26.0
Q ss_pred cccccccccc-cceeEE--ecCCCccccHHhHHHH
Q 016312 336 GQLCVVCLTR-RRISAF--NPCGHLVCCRRCAISV 367 (391)
Q Consensus 336 ~~~C~IC~~~-~~~~v~--lpCGH~~~C~~C~~~~ 367 (391)
+..|.||.+. +.+++. ++|+|. ||..|....
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 4589999975 677776 999999 899999983
No 88
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.44 E-value=0.18 Score=39.59 Aligned_cols=49 Identities=27% Similarity=0.676 Sum_probs=37.7
Q ss_pred cccccccccccceeEEecCC-CccccHHhHHHHhhcCCCCcccccccccceEEe
Q 016312 336 GQLCVVCLTRRRISAFNPCG-HLVCCRRCAISVEREASPKCPVCRMTVRSSMRI 388 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~lpCG-H~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~~i 388 (391)
..-|..|.-..+.. +.|. |. .|..|...+.+ .+.+||||..++-..+++
T Consensus 28 ~~nCKsCWf~~k~L--V~C~dHY-LCl~CLtlmL~-~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGL--VECNNHY-LCLNCLTLLLS-VSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSE--EECSSCE-EEHHHHHHTCS-SSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCe--eeecchh-hHHHHHHHHHh-hccCCcccCCcCCcceec
Confidence 35899999888854 4574 77 89999998874 356799999887765543
No 89
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.74 E-value=1 Score=41.39 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=35.7
Q ss_pred cccccccccccceeEEe-cCCCccccHHhHHHHhhcC-CCCcccccccccce
Q 016312 336 GQLCVVCLTRRRISAFN-PCGHLVCCRRCAISVEREA-SPKCPVCRMTVRSS 385 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v~l-pCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~~ 385 (391)
-..|.+|.+-......- .|+|. +=..|...+.+.. ...||.|+.+...-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999876544433 38888 7889999987532 45899999887653
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.99 E-value=13 Score=28.88 Aligned_cols=50 Identities=30% Similarity=0.739 Sum_probs=35.3
Q ss_pred ccccccccccccce----eEEecCCCcc--ccHHhHHHHhhcCCCCcccccccccc
Q 016312 335 DGQLCVVCLTRRRI----SAFNPCGHLV--CCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 335 ~~~~C~IC~~~~~~----~v~lpCGH~~--~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+.|.||-+..-- -+|+-|.... .|..|+.--.+..+..||-|..+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 45699999976321 1465554322 69999987776667789999998764
No 91
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=53.63 E-value=9.5 Score=41.83 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=45.8
Q ss_pred cCCCCccccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 330 AGDIPDGQLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 330 ~~~~~~~~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..+.++.-.|+|-.+-.+|||.+|.||..+=+.++.+|... ..+||+=|++...
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 45678888999999999999999999755789999998754 5689999998764
No 92
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.46 E-value=17 Score=23.47 Aligned_cols=9 Identities=11% Similarity=-0.215 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 016312 32 VRSFLDFRY 40 (391)
Q Consensus 32 ~~~~~~~~~ 40 (391)
...|+.+|+
T Consensus 29 ~l~~~~~rr 37 (38)
T 2k1k_A 29 GILVFRSRR 37 (38)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHeec
Confidence 333555543
No 93
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.14 E-value=11 Score=25.30 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=7.5
Q ss_pred HHhhhhhhHHHHHHHHHH
Q 016312 14 LAVSFDGAVLGVALAYTA 31 (391)
Q Consensus 14 ~~l~~d~~~lG~~~~~~a 31 (391)
||.|+=+.++++..++++
T Consensus 13 IA~gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALG 30 (44)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHH
Confidence 344444444444433333
No 94
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.20 E-value=18 Score=24.28 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q 016312 14 LAVSFDGAVLGVALAYTAVR 33 (391)
Q Consensus 14 ~~l~~d~~~lG~~~~~~a~~ 33 (391)
||.|+=+-++++..++++++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~ 31 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFA 31 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHH
Confidence 55655555555554444444
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.54 E-value=25 Score=34.25 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=30.8
Q ss_pred ccccccccccceeE-EecCCCccccHHhH--HHHhh-cCCCCccccccccc
Q 016312 337 QLCVVCLTRRRISA-FNPCGHLVCCRRCA--ISVER-EASPKCPVCRMTVR 383 (391)
Q Consensus 337 ~~C~IC~~~~~~~v-~lpCGH~~~C~~C~--~~~~~-~~~~~CPiCR~~I~ 383 (391)
..|++-+.....++ ...|.|. -|.+-. ..+.. ...-+||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 58999988887776 5899998 344432 22221 23347999988763
No 96
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.98 E-value=3.1 Score=29.71 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=13.9
Q ss_pred CCcccccccccc-ccceeEEecCCCc
Q 016312 333 IPDGQLCVVCLT-RRRISAFNPCGHL 357 (391)
Q Consensus 333 ~~~~~~C~IC~~-~~~~~v~lpCGH~ 357 (391)
..+...|.||+. .+.| -|||.
T Consensus 6 ~~d~~~C~iC~KTKFAD----G~Gh~ 27 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD----GCGHN 27 (62)
T ss_dssp SSCCCCCSSSSCSCCCS----SCCEE
T ss_pred cCCcchhhhhccceecc----CCCcc
Confidence 345669999994 3344 57776
No 97
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.28 E-value=49 Score=21.12 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHH
Q 016312 18 FDGAVLGVALAYTA 31 (391)
Q Consensus 18 ~d~~~lG~~~~~~a 31 (391)
..|+|+|++...+|
T Consensus 6 L~GIVlGlipvtla 19 (37)
T 1q90_G 6 LCGIVLGLVPVTIA 19 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHH
Confidence 36888888764444
No 98
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.36 E-value=33 Score=22.92 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=3.0
Q ss_pred HHhhhhh
Q 016312 14 LAVSFDG 20 (391)
Q Consensus 14 ~~l~~d~ 20 (391)
+|.++=|
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444444
No 99
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=29.41 E-value=33 Score=33.34 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=31.2
Q ss_pred cccccccccccceeE-EecCCCccccHHhHH--HHhh-cCCCCccccccccc
Q 016312 336 GQLCVVCLTRRRISA-FNPCGHLVCCRRCAI--SVER-EASPKCPVCRMTVR 383 (391)
Q Consensus 336 ~~~C~IC~~~~~~~v-~lpCGH~~~C~~C~~--~~~~-~~~~~CPiCR~~I~ 383 (391)
...|++-+.....++ ...|.|. -|.+-.. .+.. ...-+||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 348999988887776 5899998 3544332 2221 22347999998874
No 100
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.55 E-value=7.8 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=28.7
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccce
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRSS 385 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 385 (391)
..|+.|..+... . |....|..|-..+.. ...||-|.++++..
T Consensus 33 ~~CP~Cq~eL~~----~-g~~~hC~~C~~~f~~--~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQ----D-NGHARCRSCGEFIEM--KALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEE----E-TTEEEETTTCCEEEE--EEECTTTCSBCEEE
T ss_pred ccCccCCCccee----c-CCEEECccccchhhc--cccCcchhhHHHHH
Confidence 589999865432 1 334369899776653 24699999988754
No 101
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.11 E-value=7.1 Score=33.37 Aligned_cols=46 Identities=22% Similarity=0.552 Sum_probs=28.7
Q ss_pred ccccccccccccc-----eeEEecCCCccccHHhHHHHhhcCCCCccccccc
Q 016312 335 DGQLCVVCLTRRR-----ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMT 381 (391)
Q Consensus 335 ~~~~C~IC~~~~~-----~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 381 (391)
++..|.+|...+. -..-..|.|. +|..|.........-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 4569999998743 3344677888 68888732221112248888654
No 102
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.63 E-value=49 Score=26.20 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=31.2
Q ss_pred cccccccccccee-EEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRIS-AFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~-v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
-.|..|....... .+..=|.. +|..|..+... ++|+.|..+|..
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKP-VCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEE-EEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEEEeECCEE-echHHhCcCcC---ccCcccCCcCCc
Confidence 4677777665543 33444555 89999988753 589999999983
No 103
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=21.88 E-value=52 Score=21.01 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHH---HHHHHHH
Q 016312 18 FDGAVLGVALAYTAV---RSFLDFR 39 (391)
Q Consensus 18 ~d~~~lG~~~~~~a~---~~~~~~~ 39 (391)
..|+|+|++...++- .+|.+||
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHTC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 468888887644443 3344553
No 104
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.69 E-value=55 Score=19.40 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=14.5
Q ss_pred chhHHHHHHH---HHHHhhhh
Q 016312 2 SLLEQHLASL---YQLAVSFD 19 (391)
Q Consensus 2 ~~~~~~~~~~---~~~~l~~d 19 (391)
|.-|||+-.+ .|-||++|
T Consensus 9 spcdqeikelennirkalsfd 29 (31)
T 2wh0_Q 9 SPCDQEIKELENNIRKALSFD 29 (31)
T ss_pred CchHHHHHHHHHHHHHHhccc
Confidence 3458999888 78899887
No 105
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.57 E-value=59 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=31.9
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
..|..|........+..=|.. +|..|...... .+|..|..+|..
T Consensus 34 F~C~~C~~~L~~~~f~~~g~~-yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 34 LKCSDCHVPLAERCFSRGESV-YCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp SBCTTTCCBCCSCCEESSSCE-ECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred CccCCCCCcCCCCCcccCCee-eeccccccccc---ccccccccccCC
Confidence 467777766555445554555 89999988763 589999999875
No 106
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.69 E-value=1.2e+02 Score=22.61 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=18.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Q 016312 14 LAVSFDGAVLGVALAYTAVRSFLDFRYTSNALGKVR 49 (391)
Q Consensus 14 ~~l~~d~~~lG~~~~~~a~~~~~~~~~~~~~l~~l~ 49 (391)
+.+|+-+.++.++++++.+.-+..+.+-+++.++-+
T Consensus 13 Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFE 48 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443444444455555443
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.68 E-value=69 Score=26.34 Aligned_cols=44 Identities=16% Similarity=0.506 Sum_probs=27.7
Q ss_pred ccccccccccceeEEecCCCccccHHhHHHH------hh----cCCCCccccccc
Q 016312 337 QLCVVCLTRRRISAFNPCGHLVCCRRCAISV------ER----EASPKCPVCRMT 381 (391)
Q Consensus 337 ~~C~IC~~~~~~~v~lpCGH~~~C~~C~~~~------~~----~~~~~CPiCR~~ 381 (391)
..|.+|.+.-.=..--.|-.. ||..|+... .+ ...=.|++|+.+
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 469999976432222355655 899999864 11 122369999765
No 108
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=56 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=31.1
Q ss_pred cccccccccc---eeEEecCCCccccHHhHHHHhhcCCCCcccccccccc
Q 016312 338 LCVVCLTRRR---ISAFNPCGHLVCCRRCAISVEREASPKCPVCRMTVRS 384 (391)
Q Consensus 338 ~C~IC~~~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 384 (391)
.|..|..... ...+..=|.. +|..|......+ ..+|-.|..+|..
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~-yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMI-LCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEE-ECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCee-ecHHHHHHHcCC-CCccccCCCCcCc
Confidence 6777776664 2334444555 899999887631 1279999999985
No 109
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.16 E-value=8.7 Score=32.02 Aligned_cols=46 Identities=15% Similarity=0.478 Sum_probs=28.1
Q ss_pred ccccccccccccc-----eeEEecCCCccccHHhHHHHhhc---CCCCccccccc
Q 016312 335 DGQLCVVCLTRRR-----ISAFNPCGHLVCCRRCAISVERE---ASPKCPVCRMT 381 (391)
Q Consensus 335 ~~~~C~IC~~~~~-----~~v~lpCGH~~~C~~C~~~~~~~---~~~~CPiCR~~ 381 (391)
+...|.+|...+. ...-..|.|. +|..|....... ..-.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcc-cccccCCccCCCCCccceechhhHHH
Confidence 3568999998773 2234577777 688886544211 11248888654
Done!