BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016313
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2
SV=2
Length = 382
Score = 335 bits (859), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 189/381 (49%), Positives = 254/381 (66%), Gaps = 24/381 (6%)
Query: 17 PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
PASP A D +P G ++ ASI P NL++E ++ QT SY+++ S++H
Sbjct: 9 PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68
Query: 73 VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
V+ D I+H +Q IE LL+SQVLQPN+ECV EA+RH + TLT
Sbjct: 69 VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113
Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRARE-LYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
LVSTYF HSE+ T LCL L+Q+++ AR LY L +LF+IFP D ++ + CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173
Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
VFL+ D+ +NPF P S++F + + CFS+LK LDR+LRKS SRVR AT+GS+LC++
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGSSLCLV 233
Query: 250 GTAVAVTIAAAAVATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNN 307
VAV +A +A+HAL + +VA P C+ Y +K+L ++ QL+AA KG +VLN
Sbjct: 234 AAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGTFVLNK 293
Query: 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEH 367
DLDTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++ T QLKDLE+H
Sbjct: 294 DLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDH 353
Query: 368 ICLCFNTVNRARSLLLQEIHL 388
ICL F VN+ARSLLL EIHL
Sbjct: 354 ICLWFTNVNKARSLLLTEIHL 374
>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2
SV=1
Length = 360
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 232/366 (63%), Gaps = 30/366 (8%)
Query: 29 PPGSQGNS--TEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDH 86
P GS G+ SP S+ NL+ E ++ QT SY+++ S++ V+DP
Sbjct: 12 PEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDPT--------- 62
Query: 87 DEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEAL--RHARPNTLTRLVSTYFDHSENT 144
+++ +L +SQ L+PN E V EAL RHA+ TLT LVSTYF HSE+
Sbjct: 63 -------------QENLELFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDA 109
Query: 145 TNLCLLLHQSIYRAR-ELYAALYELFDIFPSDHHS-LSQLQCDKAFEVFLQFDSIDNPFP 202
T CL L+Q+++ AR LY L +LF+IFP D HS + + C+ AF+VFL+ D+ +NPF
Sbjct: 110 TRFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFA 169
Query: 203 CPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAV 262
P SH+F + + CF +L +LD ++RKS SRVR AT+GS LC++ V V +AA +
Sbjct: 170 SPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFI 229
Query: 263 ATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLY 320
A HAL + +VA P CT Y KK+L+++ QL+ A KG + LN DLDTIDRLV+RL+
Sbjct: 230 AYHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLH 289
Query: 321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380
T V+ DK L+R GLERGRD ++I E VKQLR++ N T QL+ L +HIC F VN++RS
Sbjct: 290 TGVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRS 349
Query: 381 LLLQEI 386
LLL+EI
Sbjct: 350 LLLKEI 355
>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2
SV=1
Length = 416
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 181/362 (50%), Gaps = 25/362 (6%)
Query: 31 GSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQ 90
G+ S+ GA ++ + +EY+N +T SYN W+++ L +
Sbjct: 55 GTASGSSNPKDGADVD----VREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPI 110
Query: 91 MQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTR-LVSTYFDHSENTTNLCL 149
+ S++L +L P+ + L +R TR L+S YF + N LC
Sbjct: 111 ESSST-SARLMSYRLFAHNLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCT 169
Query: 150 LLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNF 209
L ++I+ R Y +L F +H+SL+ + D+ E+ FD PF S
Sbjct: 170 QLLKNIHHLRSKYESLKPKFH--SENHNSLALI--DQFTEISKWFD----PFISSGSR-I 220
Query: 210 HEMRRCFSELKQQLDRKLRKSHSRVRFFSRAT--SGSTLCVIGTAVAVTIAAAAVATHAL 267
+R L ++L+ + K+ ++++ + T SG + + T + VTIA +HA
Sbjct: 221 QLIRSGCLYLLKRLESRRDKTRAKLKLINGLTHSSGLLVLALTTTLIVTIA-----SHAF 275
Query: 268 VAIVAAP-FCTAYFSP-GLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEG 325
+AAP + F P GL K A+LD A KG Y+L+ DLDTI RLV R+ V
Sbjct: 276 ALFLAAPTLLASQFKPAGLRNKLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNH 335
Query: 326 DKQLVRFGLERGRDK-HSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384
+ + F + RG + +EV ++L+R +++F+++L +LEEHI LCF T+NRAR+LL++
Sbjct: 336 VRAMAEFWVGRGSGRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVK 395
Query: 385 EI 386
EI
Sbjct: 396 EI 397
>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3
SV=2
Length = 378
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 48/360 (13%)
Query: 50 NLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNE-------DS 102
+ +EY++ +T SYN+ W++ VLD + H + H G S
Sbjct: 33 DFREEYTSAFRTESYNDFWAR--VLDIT-LAHG------AALVPRHGGGGGCAASKRLPS 83
Query: 103 HQLLVSQVLQPNRECVDEALRHARPNTLT----RLVSTYFDHSENTTNLCLLLHQSIYRA 158
++L +L+P++ V AL R + L L++ Y+ + N + LC L + I
Sbjct: 84 YRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHI 143
Query: 159 RELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDS-IDNPFPC--PNSHNFHEMRRC 215
R Y L H+L +L D + + PF + E++
Sbjct: 144 RLRYRPL----------KHTLRKLASDVGVSGLADVSAALGQPFTALAASQGRLREVQAG 193
Query: 216 FSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPF 275
+L + LD +K+ R+R +R ++ + V + A + H L A A P
Sbjct: 194 SGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPM 253
Query: 276 CTA------YFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQL 329
+ +FS A++ L QL+AA KG Y+LN D++TI RLVAR+ E L
Sbjct: 254 MSPAWLGERFFSGRAARRALV---QLEAAAKGTYILNRDMETISRLVARVRDEGEHMVAL 310
Query: 330 VRFGLER------GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLL 383
+R +E G +QEV++QL +N+++F QL +LEEH+ LCF T+N+AR +++
Sbjct: 311 LRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTINKARIMVM 370
>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000
PE=2 SV=1
Length = 378
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 163/360 (45%), Gaps = 48/360 (13%)
Query: 50 NLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNE-------DS 102
+ +EY++ +T SYN+ W++ VLD + H + H G S
Sbjct: 33 DFREEYTSAFRTESYNDFWAR--VLDIT-LAHG------AALVPRHGGGGGCAASKRLPS 83
Query: 103 HQLLVSQVLQPNRECVDEALRHARPNTLT----RLVSTYFDHSENTTNLCLLLHQSIYRA 158
++L +L+P++ V AL R + L L++ Y+ + N + LC L + I
Sbjct: 84 YRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHI 143
Query: 159 RELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDS-IDNPFPC--PNSHNFHEMRRC 215
R Y L H+L +L D + + PF + E++
Sbjct: 144 RLRYRPL----------KHTLRKLASDVGVSGLADVSAALGQPFTALAASQGRLREVQAG 193
Query: 216 FSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPF 275
+L + LD +K+ R+R +R ++ + V + A + H L A A P
Sbjct: 194 SGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPM 253
Query: 276 CTA------YFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQL 329
+ +FS A++ L QL+AA KG Y+LN D++TI RLVAR+ E L
Sbjct: 254 MSPAWLGERFFSGRAARRALV---QLEAAAKGTYILNRDMETISRLVARVRDEGEHMVAL 310
Query: 330 VRFGLER------GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLL 383
R +E G +QEV++QL +N+++F QL +LEEH+ LCF T N+AR +++
Sbjct: 311 RRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTTNKARIMVM 370
>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2
SV=2
Length = 390
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 172/381 (45%), Gaps = 35/381 (9%)
Query: 30 PGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEV 89
P +G S + S+ ++ +EY +TNSY E +K D I +
Sbjct: 16 PTRKGKS-DKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAE--DQLGITSCSKLSSSS 72
Query: 90 QMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCL 149
+ + SH +L P +E +D ++ + +L L+ T+FD S ++C
Sbjct: 73 PSPSSSSDLSFHSH--FTDYLLDPPQETLDALMQDS---SLDNLIVTFFDLSSEACDVCE 127
Query: 150 LLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDK------AFEVFLQFDSIDNPF-P 202
L Q + + + + + + I + L+C F+ +F ++ NP
Sbjct: 128 TLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCR 187
Query: 203 CPNSHNFHEMRRCFSELKQQLD--RKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAA 260
N F + S+L +L ++ + R F + G +L + +A+ +T+
Sbjct: 188 IVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLI- 246
Query: 261 AVATHALVAIVAAPFCTAYFSPGLAKKQLAHV---------------AQLDAAKKGIYVL 305
+A H+++ + AAP S L +K+ A Q+D A KG+++L
Sbjct: 247 -IALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFIL 305
Query: 306 NNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLE 365
NDLDT+ RL RL +E K + + R ++E +++ +++ F+DQL++LE
Sbjct: 306 INDLDTLSRLAGRLCDEIEHRKTVAAM-CAKSRKIEVLKEALREFNGHEEKFSDQLQELE 364
Query: 366 EHICLCFNTVNRARSLLLQEI 386
EH+ LCF+T+NR+R L+L +I
Sbjct: 365 EHLYLCFHTINRSRRLVLAQI 385
>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica
GN=Os06g0718300 PE=3 SV=1
Length = 408
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 293 AQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRR 352
A LDAA +G Y++ DLDT+ R+V R + +E + + R + ++ +QEV ++
Sbjct: 292 ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEEE 351
Query: 353 NQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
+++ QL +LEEH+CLC T+NR R L+ E+
Sbjct: 352 CEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385
>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica
GN=OsI_023618 PE=3 SV=2
Length = 408
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 293 AQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRR 352
A LDAA +G Y++ DLDT+ R+V R + +E + + R + ++ +QEV ++
Sbjct: 292 ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEEE 351
Query: 353 NQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
+++ QL +LEEH+CLC T+NR R L+ E+
Sbjct: 352 CEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385
>sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1
SV=1
Length = 374
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 123/317 (38%), Gaps = 40/317 (12%)
Query: 101 DSHQLLVSQVLQPNRECVDEALRHARP----NTLTRLVSTYFDHSENTTNLCLLLHQSIY 156
DS + + +L+ N+E V L + + LV YF++S T + C L + +
Sbjct: 66 DSLKEVTQCLLEMNQEVVKVILDCKKDIWKNQEMFELVEDYFENSLKTLDFCAALEKGLR 125
Query: 157 RARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCF 216
RAR+ + + F + K E F ++PF N F + +
Sbjct: 126 RARDSHLLILVALQQFEDESLVQGGNGYKKTLEELKNFKDAESPF---NEDFFKMFQSVY 182
Query: 217 SE----------LKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHA 266
+ K +LD+KL+ H+ + S++ + T V I + A A
Sbjct: 183 KQQMLMLEKLQHRKNKLDKKLKCIHTWRKL-------SSIIFVATFATVLICSVVAAAMA 235
Query: 267 LVAIVAAPFCTAYFSPGLAKKQLAHVAQ------------LDAAKKGIYVLNNDLDTIDR 314
+ AA G K + + + + + + G +V DLD I
Sbjct: 236 APPVAAALAAATAVPLGSMGKWIDSLWKNYENALKGQKEVISSMQAGTFVAVKDLDNIRV 295
Query: 315 LVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNT 374
L+ RL + G + F +E K I ++ K+L + F +++L LC
Sbjct: 296 LIERLEIEITGMVKSAEFAVEHNAVKIGIDDIKKKL----EVFKKNVEELGTQADLCSRD 351
Query: 375 VNRARSLLLQEIHLHQN 391
+ RAR+++LQ I H N
Sbjct: 352 IRRARTVILQRIIKHPN 368
>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100
PE=2 SV=1
Length = 388
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 25/279 (8%)
Query: 133 LVSTYFDHSENTTNLCLLLHQSIYRARE----LYAALYELFDIFPSDHHSLSQL------ 182
LV YF+ S +T + C L + + RAR+ L+ AL D +D + Q
Sbjct: 111 LVEDYFESSLHTLDFCTALDKCLKRARDSQLLLHVALQRFDDEEDNDAAAAGQEDAAPSA 170
Query: 183 QCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRR-------CFSELKQQLDRKLR--KSHSR 233
+ + QF + +PF F + R + K +LD+K+R K+ R
Sbjct: 171 RYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQQLTMLEKLQQRKHRLDKKVRAIKAWRR 230
Query: 234 VRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVA 293
V AT+ + + + A A A A A + + L Q A
Sbjct: 231 VSSIIFATTFAAVLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLLKGYQDALRG 290
Query: 294 Q---LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQL 350
Q + A + G ++ DLD+I L+ R+ + V F RD+ +++ V+++
Sbjct: 291 QKEVVSAMQVGTFIAIKDLDSIRVLINRVELEISSMIDCVEFA---ERDEEAVKFGVEEI 347
Query: 351 RRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLH 389
++ + F ++DL E C + RAR+++LQ I H
Sbjct: 348 KKKLEVFMKSVEDLGEQADRCSRDIRRARTVVLQRIIRH 386
>sp|A2XDK8|U496A_ORYSI UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2
SV=1
Length = 388
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 25/279 (8%)
Query: 133 LVSTYFDHSENTTNLCLLLHQSIYRARE----LYAALYELFDIFPSDHHSLSQL------ 182
LV YF+ S +T + C L + + RAR+ L+ AL D +D + Q
Sbjct: 111 LVEDYFESSLHTLDFCTALDKCLKRARDSQLLLHVALQRFDDEEDNDAAAAGQEDAAPSA 170
Query: 183 QCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRR-------CFSELKQQLDRKLR--KSHSR 233
+ + QF + +PF F + R + K +LD+K+R K+ R
Sbjct: 171 RYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQQLTMLEKLQQRKHRLDKKVRAIKAWRR 230
Query: 234 VRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVA 293
V AT+ + + + A A A A A + + L Q A
Sbjct: 231 VSSIIFATTFAAVLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLLKGYQDALRG 290
Query: 294 Q---LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQL 350
Q + A + G ++ DLD+I L+ R+ + V F RD+ +++ V+++
Sbjct: 291 QKEVVSAMQVGTFIAIKDLDSIRVLINRVELEISSMIDCVEFA---ERDEEAVKFGVEEI 347
Query: 351 RRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLH 389
++ + F ++DL E C + RAR+++LQ I H
Sbjct: 348 KKKLEVFMKSVEDLGEQADRCSRDIRRARTVVLQRIIRH 386
>sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630 OS=Arabidopsis thaliana GN=At2g18630 PE=2
SV=3
Length = 393
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 111/275 (40%), Gaps = 27/275 (9%)
Query: 130 LTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFE 189
L LV+ YF+ + T + C L + RAR + + F ++ + +K E
Sbjct: 110 LFSLVNLYFESTAKTMDFCSELENCLNRARRSQVIIQFAVNQFEEENEDKENRKYEKTLE 169
Query: 190 VFLQFDSIDNPFPCPNSHNFH-------EMRRCFSELKQQLDRKLR--KSHSRVRFFSRA 240
+F PF F M +LK++LD++LR K+ RV
Sbjct: 170 ELKRFKVAGEPFTKEFFALFDLVYKQQVMMLEELHKLKRKLDKRLRNIKTWRRVSNMVFV 229
Query: 241 TSGSTLCVIG--------TAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHV 292
T+ ++ + V IA A V T Y +K++
Sbjct: 230 TAFVSVLIFSVVAAAVAAPPVVAAIAGALAVPVGSVGKWCNTLWTKYEKVVRGQKEI--- 286
Query: 293 AQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRD-KHSIQEVVKQLR 351
+ + + G Y+ ++D I LV ++ +E + F + ++ + +I E+ K+L
Sbjct: 287 --ITSIRIGTYISVKEMDNISILVRKVEVEIESLLKKAEFAITEEKEVRLAIDEIKKKL- 343
Query: 352 RNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
FT+ +++L EH + V +AR+++LQ I
Sbjct: 344 ---DVFTETIEELGEHAGKYCSDVTKARTVILQRI 375
>sp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g34330 OS=Arabidopsis thaliana GN=At4g34330 PE=3
SV=1
Length = 354
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 120/298 (40%), Gaps = 41/298 (13%)
Query: 122 LRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELF-------DIFPS 174
+R ++L ++ + D ++ + L + I++ +E++ + F D F +
Sbjct: 58 VRSLSFDSLKAVIGSLLDMNQEVAKVILDCKKDIWKNQEMFEFVEAYFETSLKTLDFFNA 117
Query: 175 DHHSLSQLQCD-----------KAFEVFLQFDSIDNPFPCPNSHNFHEM-RRCFSELKQQ 222
L +Q + K + +F D PF +F +M + +++ K
Sbjct: 118 LKRGLQGVQINHLFILDGNGYKKTLQELKRFKDADRPFD----QDFFKMFQSVYNQQKWM 173
Query: 223 LDR------KLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPF- 275
LD+ KL K R+R + + +S + T V ++ AA +A + A +AA
Sbjct: 174 LDKLQRRQNKLDKKLKRIRTWRKLSSIIFMATFATLVICSVLAATMAAPHVAAALAAATP 233
Query: 276 ---CTAYFSPGLAKKQLAHVAQ----LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQ 328
+ L K + + G YV DL+ I L+ RL T + G +
Sbjct: 234 PVGSMGKWIDSLWKNYENEIKGQTEVFSSMYVGTYVAVQDLNNIKDLIKRLDTEIRGMVK 293
Query: 329 LVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
+ E G K I + QL + F +++LE +C + RAR+++LQ I
Sbjct: 294 NAEYAGELGPVKIGINAIKTQL----EVFKKNVEELEIQADMCSTDIRRARTVILQRI 347
>sp|Q8GW16|U496H_ARATH UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2
SV=1
Length = 412
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 117/278 (42%), Gaps = 24/278 (8%)
Query: 130 LTRLVSTYFDHSENTTNLCLLLHQSIYRAR---ELYAALYELFDIFPSDHHSLSQLQCDK 186
LT LV+ YFD S T + C + + RAR L + F++ S + + +K
Sbjct: 118 LTCLVNAYFDSSIKTLDFCNAVDNCVKRARIGQMLLQFALKQFEMESSGSNKSVEPGTNK 177
Query: 187 ---AFEVFLQFDSIDNPFPCPNS---HNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRA 240
E +F + +PF + +E + E+ + RKL K ++++ +
Sbjct: 178 YAKTLEELNKFKASGDPFDGDFFMLLESVYEQQVMLLEILHKQKRKLDKKLKNIKYWKKI 237
Query: 241 TSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHV-------- 292
S + + V+V I + A A +V A G K H+
Sbjct: 238 ---SNVVFVTAFVSVLIFSVVAAAVAAPPVVTALAAALAVPIGSIGKWCNHLWKKYETAV 294
Query: 293 -AQLD---AAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVK 348
Q D + + G YV D+D I V +L +E Q V F L+ ++ +++ +
Sbjct: 295 KGQKDIVLSMRIGAYVTMKDMDNIRVHVDKLKIEMESMMQKVDFALKEKEEEVAVRLSMH 354
Query: 349 QLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
++ + FT++++++ ++ C + AR+++L+ I
Sbjct: 355 EISKKFDVFTERIEEVGDNATKCSKNITLARTIVLRHI 392
>sp|Q1MPN4|KDSB_LAWIP 3-deoxy-manno-octulosonate cytidylyltransferase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=kdsB PE=3 SV=1
Length = 254
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 27 GYPPGSQGNS-TEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHD 85
G P G+S G P I P Y N V++N + S + D I H
Sbjct: 10 GIIPARYGSSRLPGKPLIDIWGKPMFWYVYQNAVESNIFR---SVVLATDSEEIAESAHQ 66
Query: 86 HD--EVQMQIEHINGNEDSHQLLVSQVLQPNRECV----DEALRHARPNTLTRLVSTYFD 139
V +EHI+G + ++ + ++P+ V DE L +P + +LV + D
Sbjct: 67 LSIPYVMTSVEHISGTDRVYEAAIKMNIEPDSVVVNIQGDEPL--VKPEAIQQLVEPFID 124
Query: 140 HSENTTNLC 148
S T L
Sbjct: 125 VSIQVTTLS 133
>sp|Q6CJA3|MED4_KLULA Mediator of RNA polymerase II transcription subunit 4
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED4 PE=3
SV=1
Length = 285
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 268 VAIVAAPFCTAYFSPGLAKKQLAHVA---QLDAAKKGIYVLNNDLDTIDRLVARLYTAVE 324
++ PF + ++L V L+ ++ I L+ +DT ++ + +E
Sbjct: 11 TSVATLPFSAQDKTQEQVSEELQSVGIYQDLERYEETIQQLSKSVDTFKPDLSLIDKVIE 70
Query: 325 GDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384
DK+L LE + + I+E + +L + Q+N ++ +++ E + C+N++N +L+
Sbjct: 71 CDKKLYE-TLEEFDEYYKIEEELSRLDKEQKNIDNKTREILETLNTCYNSLNELP--MLE 127
Query: 385 EIHLHQ 390
++ Q
Sbjct: 128 QVEFEQ 133
>sp|O18823|AOAH_RABIT Acyloxyacyl hydrolase OS=Oryctolagus cuniculus GN=AOAH PE=2 SV=1
Length = 575
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 168 LFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHE-MRRCFSELKQQLDRK 226
L+D S +H L QL D + F PCP + +E +R SE QQL
Sbjct: 424 LWDTLHSRYHPLGQLNKDVTYTQLYSFLGCLQVSPCPGWMSANETLRALTSERAQQLSET 483
Query: 227 LRKSHSRVRF 236
LRK + +F
Sbjct: 484 LRKIAASKKF 493
>sp|Q9M1J0|U496O_ARATH UPF0496 protein At3g57100 OS=Arabidopsis thaliana GN=At3g57100 PE=2
SV=1
Length = 359
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 38/280 (13%)
Query: 130 LTRLVSTYFDHSENTTNLCLLLHQSIYRARE-----LYAALYELFDIFPSDH-HSLSQLQ 183
L RL++ YF S+ + LC L + R+ L AL + F++ + SL +
Sbjct: 83 LFRLLNHYFTTSKGVSQLCESLRTCLERSENNECLLLDEALVD-FELEKLGYGGSLEEAS 141
Query: 184 CDKAFEVFLQFDSI--------DNPFPCPNSHNFH----EMRRCFSELKQQL---DRKLR 228
K + F++ D+ C F E+ + +L++ + D+KLR
Sbjct: 142 FRKTYRDLRNFNAFYNNNSGEEDDLDYCEFLRKFQTCHEELAKMVVKLEKTMKDIDKKLR 201
Query: 229 KSHSRVRFFSRATSGSTLC--VIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAK 286
+ R RA + L VI + A V L VA+ + + + L +
Sbjct: 202 RVRGR-----RAIVTAALLAPVIAVIFLSKLVAGLVPIEGLSTFVASRWRKS--TESLKR 254
Query: 287 KQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEV 346
++ A + + ++GI V ++ I +LV+RL + F +++ + S+
Sbjct: 255 EKTA----MSSMERGIIVALKQVEKISKLVSRLESVERSISLTAEFAVKK---RSSVVVA 307
Query: 347 VKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
++++ ++ L DL+ LC R++ L++I
Sbjct: 308 MREVEEERKRLKSTLVDLDRETGLCNGFAQFGRTVALEKI 347
>sp|A9B775|RECF_HERA2 DNA replication and repair protein RecF OS=Herpetosiphon
aurantiacus (strain ATCC 23779 / DSM 785) GN=recF PE=3
SV=1
Length = 385
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 298 AKKGIYVLNND---LDTIDRLVARLYTAVEG---DKQLVRFGLERGRDKHSIQEVVKQLR 351
AK G+YVL + T+D+L RLY + G D +L D S Q +KQLR
Sbjct: 206 AKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDLDLRLNYLDTTPAHDVPSFQAALKQLR 265
Query: 352 RNQQN 356
R ++
Sbjct: 266 REERE 270
>sp|A1L0Z0|MED1_XENTR Mediator of RNA polymerase II transcription subunit 1 OS=Xenopus
tropicalis GN=med1 PE=1 SV=1
Length = 1573
Score = 32.7 bits (73), Expect = 5.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 8 KSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAPNLT 52
KSPS ++ P +PP PG+ G S + PG + P P +T
Sbjct: 1012 KSPSHITNRPFTPPTSTGGSKSPGTSGRS-QTPPGMATPPIPKIT 1055
>sp|Q6INP8|MED1_XENLA Mediator of RNA polymerase II transcription subunit 1 OS=Xenopus
laevis GN=med1 PE=2 SV=1
Length = 1570
Score = 32.7 bits (73), Expect = 5.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 8 KSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAPNLT 52
KSPS ++ P +PP PG+ G S + PG + P P +T
Sbjct: 1009 KSPSHITNRPFTPPTSTGGSKSPGTSGRS-QTPPGMATPPIPKIT 1052
>sp|Q40703|MADS4_ORYSJ MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica
GN=MADS4 PE=1 SV=3
Length = 215
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 47 PAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLL 106
P + ++Y QTNS +W + H I+ ++D +Q+++ H+ G ED + L
Sbjct: 68 PLSRILEKY----QTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKG-EDLNSLQ 122
Query: 107 VSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNL 147
+++ ++EAL + + N +++ + H N L
Sbjct: 123 PKELI-----AIEEALNNGQANLRDKMMDHWRMHKRNEKML 158
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 6 STKSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYN 65
ST A + +PA PP I VN YPP + APN Q S + TN +
Sbjct: 260 STPPTIAATPVPALPPPIAVNSYPP--------------VPAAPN-GQSASEALYTNGVH 304
Query: 66 EMWSKIHVLDPNNINHHNHDH 86
++ LDP + H
Sbjct: 305 PYQAQSPALDPLQQAYTGMQH 325
>sp|Q9VVV9|NKD_DROME Protein naked cuticle OS=Drosophila melanogaster GN=nkd PE=1 SV=3
Length = 928
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 2 LQCLSTKSPSATSSIPASPPAIDVNG 27
L C + T SIPA+PPAI+VNG
Sbjct: 621 LSCSPPTAEPTTPSIPAAPPAIEVNG 646
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,404,167
Number of Sequences: 539616
Number of extensions: 5926814
Number of successful extensions: 23022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 22905
Number of HSP's gapped (non-prelim): 107
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)