Query 016313
Match_columns 391
No_of_seqs 97 out of 104
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 1.7E-85 3.6E-90 652.3 28.7 288 99-386 29-336 (336)
2 PF05633 DUF793: Protein of un 99.8 5.1E-18 1.1E-22 171.6 19.5 244 128-385 98-388 (389)
3 PF03087 DUF241: Arabidopsis p 97.0 0.23 5.1E-06 47.7 22.0 41 131-171 31-71 (231)
4 TIGR02894 DNA_bind_RsfA transc 87.4 5.6 0.00012 36.7 9.6 43 342-384 115-157 (161)
5 PF05055 DUF677: Protein of un 84.6 51 0.0011 33.8 17.2 23 208-230 154-176 (336)
6 PF08317 Spc7: Spc7 kinetochor 81.2 64 0.0014 32.5 15.4 21 146-166 75-95 (325)
7 PF04156 IncA: IncA protein; 80.6 27 0.00059 31.9 11.4 19 295-313 97-115 (191)
8 smart00787 Spc7 Spc7 kinetocho 76.9 89 0.0019 31.7 15.4 105 278-382 136-262 (312)
9 PF12729 4HB_MCP_1: Four helix 67.3 60 0.0013 27.6 9.6 63 303-366 68-130 (181)
10 PF06072 Herpes_US9: Alphaherp 64.2 16 0.00034 28.4 4.6 17 217-233 12-28 (60)
11 PF06103 DUF948: Bacterial pro 61.3 63 0.0014 26.1 8.1 57 309-368 28-84 (90)
12 PF06103 DUF948: Bacterial pro 58.7 73 0.0016 25.7 8.1 24 307-330 47-70 (90)
13 KOG4747 Two-component phosphor 58.5 57 0.0012 29.8 7.9 103 120-228 34-136 (150)
14 PF05508 Ran-binding: RanGTP-b 57.4 1.2E+02 0.0027 30.7 10.9 70 298-371 72-144 (302)
15 PF04012 PspA_IM30: PspA/IM30 52.3 1.9E+02 0.0042 27.0 11.0 93 284-377 28-123 (221)
16 PF01616 Orbi_NS3: Orbivirus N 50.6 38 0.00083 32.2 5.8 27 216-242 72-98 (195)
17 cd02433 Nodulin-21_like_2 Nodu 50.0 1.5E+02 0.0032 28.8 9.9 65 297-361 65-135 (234)
18 PRK11091 aerobic respiration c 48.3 1.1E+02 0.0025 33.7 9.9 32 291-325 90-121 (779)
19 PF10168 Nup88: Nuclear pore c 46.8 4.8E+02 0.01 29.6 16.3 28 341-368 688-715 (717)
20 PF12761 End3: Actin cytoskele 45.0 1.4E+02 0.003 28.5 8.5 100 276-386 93-193 (195)
21 cd02434 Nodulin-21_like_3 Nodu 44.3 36 0.00079 32.6 4.7 67 297-363 48-120 (225)
22 PRK11352 regulator protein Frm 43.5 1.9E+02 0.0042 24.0 8.6 72 313-387 9-83 (91)
23 PF03511 Fanconi_A: Fanconi an 43.5 26 0.00056 27.6 2.8 36 130-165 13-53 (64)
24 KOG0976 Rho/Rac1-interacting s 41.3 96 0.0021 35.7 7.7 78 303-380 294-372 (1265)
25 PF15290 Syntaphilin: Golgi-lo 40.2 86 0.0019 31.6 6.6 49 329-377 101-156 (305)
26 PF14712 Snapin_Pallidin: Snap 39.0 1.5E+02 0.0033 23.8 7.0 68 151-230 19-87 (92)
27 PF12711 Kinesin-relat_1: Kine 38.9 92 0.002 25.9 5.6 45 294-338 7-55 (86)
28 PF04568 IATP: Mitochondrial A 38.1 50 0.0011 28.2 4.0 23 347-369 74-100 (100)
29 PF05461 ApoL: Apolipoprotein 37.8 4.5E+02 0.0098 26.7 12.1 12 250-261 107-118 (313)
30 smart00502 BBC B-Box C-termina 36.1 2.4E+02 0.0052 23.0 9.6 40 343-382 63-102 (127)
31 PF04156 IncA: IncA protein; 36.0 3.4E+02 0.0073 24.7 12.0 56 307-365 95-150 (191)
32 PF07730 HisKA_3: Histidine ki 35.3 1.8E+02 0.004 21.4 7.6 55 313-376 3-57 (68)
33 PF05478 Prominin: Prominin; 34.9 4.4E+02 0.0096 30.0 12.1 73 306-384 212-285 (806)
34 KOG4191 Histone acetyltransfer 33.9 1.9E+02 0.0041 31.1 8.2 74 300-381 394-468 (516)
35 PRK15039 transcriptional repre 33.3 2.9E+02 0.0062 23.1 7.8 53 317-375 16-68 (90)
36 PF04711 ApoA-II: Apolipoprote 33.0 9.8 0.00021 30.7 -0.9 45 99-143 3-47 (76)
37 COG1937 Uncharacterized protei 31.0 3.2E+02 0.0069 22.9 7.9 9 364-372 57-65 (89)
38 PF09177 Syntaxin-6_N: Syntaxi 30.5 1E+02 0.0023 25.3 4.8 28 343-370 37-64 (97)
39 KOG2856 Adaptor protein PACSIN 28.9 2.1E+02 0.0046 30.1 7.5 64 314-387 177-240 (472)
40 PLN03083 E3 UFM1-protein ligas 28.7 8.3E+02 0.018 28.3 12.7 26 204-229 659-684 (803)
41 PF00957 Synaptobrevin: Synapt 27.8 2E+02 0.0044 23.0 6.0 60 310-369 3-62 (89)
42 PRK09546 zntB zinc transporter 27.6 6E+02 0.013 25.2 10.5 91 130-228 148-243 (324)
43 PF05597 Phasin: Poly(hydroxya 27.6 2.9E+02 0.0064 24.6 7.3 54 310-365 68-129 (132)
44 PF02403 Seryl_tRNA_N: Seryl-t 27.4 2E+02 0.0044 23.8 6.1 35 337-371 66-100 (108)
45 PF06008 Laminin_I: Laminin Do 27.4 3.4E+02 0.0075 26.2 8.5 69 311-382 182-250 (264)
46 cd02432 Nodulin-21_like_1 Nodu 27.0 3.9E+02 0.0086 25.5 8.7 58 297-354 53-116 (218)
47 PF12486 DUF3702: ImpA domain 26.9 4.7E+02 0.01 23.8 8.6 34 272-307 54-89 (148)
48 PF14723 SSFA2_C: Sperm-specif 26.7 69 0.0015 30.1 3.3 25 347-371 107-131 (179)
49 PRK11020 hypothetical protein; 25.8 2.7E+02 0.0057 24.6 6.5 50 312-366 3-52 (118)
50 PF13887 MRF_C1: Myelin gene r 25.6 72 0.0016 22.4 2.4 22 345-366 14-35 (36)
51 PRK10803 tol-pal system protei 23.9 4.4E+02 0.0095 25.8 8.6 47 291-337 45-91 (263)
52 PF06120 Phage_HK97_TLTM: Tail 23.8 7.6E+02 0.017 25.1 10.3 12 284-295 40-51 (301)
53 PF06657 Cep57_MT_bd: Centroso 23.1 4.1E+02 0.0088 21.5 7.6 61 310-371 13-76 (79)
54 PRK04778 septation ring format 22.8 1E+03 0.022 25.9 12.1 81 302-382 339-420 (569)
55 PF03904 DUF334: Domain of unk 22.7 1.6E+02 0.0034 28.9 5.0 29 209-237 122-150 (230)
56 PF02583 Trns_repr_metal: Meta 22.4 4.2E+02 0.0092 21.4 7.5 57 314-376 6-65 (85)
57 KOG1086 Cytosolic sorting prot 22.0 2.5E+02 0.0053 30.3 6.6 80 309-389 208-294 (594)
58 PF04136 Sec34: Sec34-like fam 21.7 6E+02 0.013 22.9 9.4 45 129-173 29-76 (157)
59 TIGR02956 TMAO_torS TMAO reduc 21.6 1.2E+03 0.026 26.3 16.5 21 284-304 356-376 (968)
60 PF00804 Syntaxin: Syntaxin; 21.4 4.1E+02 0.0088 20.9 6.8 44 341-384 45-93 (103)
61 PF10805 DUF2730: Protein of u 21.3 1.3E+02 0.0028 25.5 3.8 56 307-370 42-97 (106)
62 PF04380 BMFP: Membrane fusoge 20.9 1.8E+02 0.0039 23.4 4.3 27 340-366 52-78 (79)
63 PF03649 UPF0014: Uncharacteri 20.1 3E+02 0.0065 27.0 6.5 41 299-339 128-168 (250)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=1.7e-85 Score=652.29 Aligned_cols=288 Identities=39% Similarity=0.580 Sum_probs=270.1
Q ss_pred CCchhhHhhhhccCCChHHHHHHHhcc----CCchHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC
Q 016313 99 NEDSHQLLVSQVLQPNRECVDEALRHA----RPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPS 174 (391)
Q Consensus 99 ~~~s~~~~~~~lLeP~qe~v~~il~~~----k~~~l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~ 174 (391)
+.+||+.|+++||||+||++..|++.. ++++|++||++|||+|++||+||++|++||++||.+|++|+++|++|+.
T Consensus 29 s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~~ 108 (336)
T PF05055_consen 29 SFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFEK 108 (336)
T ss_pred ChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 488999999999999999886554332 7899999999999999999999999999999999999999999999998
Q ss_pred CCCC----cchhhhHHHHHHHHhhhhcCCCCCCC-CCchHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhccccccchh
Q 016313 175 DHHS----LSQLQCDKAFEVFLQFDSIDNPFPCP-NSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249 (391)
Q Consensus 175 e~~~----~~~~~~~~al~~L~~F~~~~NPFs~~-~~~~Fq~v~~~~ssLL~kL~~~k~K~~rKlk~~r~~~~vS~i~fv 249 (391)
+.+. .++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|++||+|++|+|+++|++|||
T Consensus 109 e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fv 188 (336)
T PF05055_consen 109 ESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFV 188 (336)
T ss_pred ccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8642 45799999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHhhccccc--cccchhHHHHHHHH---HHHHHHhhccceehhcccccHHHHHHH
Q 016313 250 GTAVAVTIAAAAVATHA------LVAIVAAPFCT--AYFSPGLAKKQLAH---VAQLDAAKKGIYVLNNDLDTIDRLVAR 318 (391)
Q Consensus 250 aa~~av~i~avviAaha------lagl~a~P~~~--~w~~~~~~kke~al---~~QldaaakGtyIl~~DLDTIsrLV~R 318 (391)
+++++|+|+++|+|+|| ++|++++|+++ +|+.++|+||+.++ ++|+|+|+|||||+++||||||+||+|
T Consensus 189 aa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~R 268 (336)
T PF05055_consen 189 AAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVDR 268 (336)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHH
Confidence 99999999999988884 45566789887 59999999998765 466999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 319 LYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386 (391)
Q Consensus 319 L~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLqeI 386 (391)
|+|+||||+++|+||++++++++.+++||+||+|++++|++||||||||||+||++|||||++|||+|
T Consensus 269 L~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 269 LEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=99.79 E-value=5.1e-18 Score=171.60 Aligned_cols=244 Identities=18% Similarity=0.227 Sum_probs=191.1
Q ss_pred chHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcC--C---C--
Q 016313 128 NTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSID--N---P-- 200 (391)
Q Consensus 128 ~~l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~--N---P-- 200 (391)
+.+.+||.+|||.|.|++|+|+++..+|.+.|..|+.++-|++.++.. ...++.++.+|...|.++..+. + +
T Consensus 98 ~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~-~~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~ 176 (389)
T PF05633_consen 98 PPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSS-RPLGEGQLRRARKALSDLKIAMLDDKDSGSS 176 (389)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 458899999999999999999999999999999999999999999877 3578889999999998887411 0 0
Q ss_pred --------C----------CC----CCCchHHH------HHHhhHHHHHHHHHHHHhhhhhhhhhhhhcccc-----ccc
Q 016313 201 --------F----------PC----PNSHNFHE------MRRCFSELKQQLDRKLRKSHSRVRFFSRATSGS-----TLC 247 (391)
Q Consensus 201 --------F----------s~----~~~~~Fq~------v~~~~ssLL~kL~~~k~K~~rKlk~~r~~~~vS-----~i~ 247 (391)
| .. .....|++ -.=.++.+|+.| ...|-.+|+-.... ..+
T Consensus 177 ~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m-------~~nL~~Pk~~esak~~gL~~A~ 249 (389)
T PF05633_consen 177 GGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAM-------GENLVLPKGKESAKGRGLLRAM 249 (389)
T ss_pred cccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHH-------HhcCCCCCCccccccchHHHHH
Confidence 0 00 01123443 233466777777 66776665543322 238
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHH----hhccccccccchhHHHHHHHHHHHHHHhh-ccceehhcccccHHHHHHHHH
Q 016313 248 VIGTAVAVTIAAAAVATHAL--VAI----VAAPFCTAYFSPGLAKKQLAHVAQLDAAK-KGIYVLNNDLDTIDRLVARLY 320 (391)
Q Consensus 248 fvaa~~av~i~avviAahal--agl----~a~P~~~~w~~~~~~kke~al~~Qldaaa-kGtyIl~~DLDTIsrLV~RL~ 320 (391)
|+..+++|+||.+++||-+- -|+ .++|--.+|..++.. .+.++.+.++... ||...+.++|+.|.+.|++|+
T Consensus 250 Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~-LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~ 328 (389)
T PF05633_consen 250 YGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFIS-LQERINEEIKKKERKGSCGLLKELQQVEASVRELH 328 (389)
T ss_pred HHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHH-HHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHH
Confidence 99999999999988886642 133 225555589988775 6677888888875 779999999999999999999
Q ss_pred HHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQE 385 (391)
Q Consensus 321 deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLqe 385 (391)
+-++. ++|.++.++ .+.+++.|+||.+..+.+.+.|+.||.+|+.-|+.|-++|+-+|.-
T Consensus 329 el~d~----~~~p~~~e~-~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~ 388 (389)
T PF05633_consen 329 ELIDS----FQFPLEEEK-EEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDS 388 (389)
T ss_pred HHHHh----ccCCcchhH-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 77774 357766643 5679999999999999999999999999999999999999998863
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=97.05 E-value=0.23 Score=47.74 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=39.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 016313 131 TRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDI 171 (391)
Q Consensus 131 ~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~ 171 (391)
..+|++..|.|..-+|+|+.....+-+.+...+-+|.+|..
T Consensus 31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR 71 (231)
T PF03087_consen 31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR 71 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999976
No 4
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.37 E-value=5.6 Score=36.68 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 342 SIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384 (391)
Q Consensus 342 ~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLq 384 (391)
.++.-+++|.+....+.+.+..++|--..-+..++|||.+++-
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555677777777777777777788888999999999998864
No 5
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=84.62 E-value=51 Score=33.80 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=11.4
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhh
Q 016313 208 NFHEMRRCFSELKQQLDRKLRKS 230 (391)
Q Consensus 208 ~Fq~v~~~~ssLL~kL~~~k~K~ 230 (391)
++.++.++..+..+|++++.+.+
T Consensus 154 ~~~~Ll~kL~~~k~Kl~kklk~~ 176 (336)
T PF05055_consen 154 QQSSLLEKLDSRKKKLRKKLKLV 176 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444443
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.25 E-value=64 Score=32.50 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 016313 146 NLCLLLHQSIYRARELYAALY 166 (391)
Q Consensus 146 d~C~~Llk~I~~aR~~y~~I~ 166 (391)
..|..|.+.|.+.|....-+.
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999987765554
No 7
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.63 E-value=27 Score=31.86 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=7.1
Q ss_pred HHHhhccceehhcccccHH
Q 016313 295 LDAAKKGIYVLNNDLDTID 313 (391)
Q Consensus 295 ldaaakGtyIl~~DLDTIs 313 (391)
++....-.+.+..+++...
T Consensus 97 l~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 8
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.94 E-value=89 Score=31.67 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=54.0
Q ss_pred cccchhHHHHHHHHHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCC-----Cc---chHH-----
Q 016313 278 AYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGR-----DK---HSIQ----- 344 (391)
Q Consensus 278 ~w~~~~~~kke~al~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~-----~~---~~vk----- 344 (391)
.|-..++..-...+.+.++.|...--.+.+++.-++.++..|.+.-+..+.-++-.-.... |. ..++
T Consensus 136 eWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~ 215 (312)
T smart00787 136 EWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKK 215 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHH
Confidence 4443333333334555677777777777788887777777666554444443322211111 00 0111
Q ss_pred ---------HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016313 345 ---------EVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLL 382 (391)
Q Consensus 345 ---------evv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lV 382 (391)
--+.+++.........|++..+....|-..|+.|+..+
T Consensus 216 ~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 216 LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344444444555566667777777777643
No 9
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=67.31 E-value=60 Score=27.58 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=34.2
Q ss_pred eehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHH
Q 016313 303 YVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEE 366 (391)
Q Consensus 303 yIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEE 366 (391)
|++..|-+.+.....++...........+--.....+ ..-+..++++++....|.+..+++-+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~ 130 (181)
T PF12729_consen 68 YLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILS-PEEKQLLEEFKEAWKAYRKLRDQVIE 130 (181)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555554444332222111 12346677777777777666665533
No 10
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=64.19 E-value=16 Score=28.44 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 016313 217 SELKQQLDRKLRKSHSR 233 (391)
Q Consensus 217 ssLL~kL~~~k~K~~rK 233 (391)
.+.|.++..+.-+.++|
T Consensus 12 ~~FL~RvGr~q~~~r~R 28 (60)
T PF06072_consen 12 TEFLRRVGRQQHASRRR 28 (60)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34577776655444443
No 11
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=61.27 E-value=63 Score=26.11 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHH
Q 016313 309 LDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHI 368 (391)
Q Consensus 309 LDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv 368 (391)
++.+...++++..+++.+..-++--+++-.. +.+-++...++...+.+.++++++-+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~---l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNE---LLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333211 22334445555555666666666554
No 12
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=58.75 E-value=73 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=10.4
Q ss_pred cccccHHHHHHHHHHHhhhhHHHH
Q 016313 307 NDLDTIDRLVARLYTAVEGDKQLV 330 (391)
Q Consensus 307 ~DLDTIsrLV~RL~deIE~~~~~v 330 (391)
++.+.+-.-++.+-+.++...+-+
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444444444444333
No 13
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=58.52 E-value=57 Score=29.84 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=71.0
Q ss_pred HHHhccCCchHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcCC
Q 016313 120 EALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDN 199 (391)
Q Consensus 120 ~il~~~k~~~l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~N 199 (391)
++....++..+..-+.-||+.|+.|.- .+...+..-+ -+..+..-.|+|++.+...+-.+-.+....++.|-.++|
T Consensus 34 ~lqD~~~p~fv~ev~~~fF~~s~~~i~---~~r~ald~~~-d~k~~~~~~hqlkgssssIGa~kvk~~c~~~~~~~~~~n 109 (150)
T KOG4747|consen 34 ELQDDSSPDFVEEVVGLFFEDSERLIN---NLRLALDCER-DFKKLGSHVHQLKGSSSSIGALKVKKVCVGFNEFCEAGN 109 (150)
T ss_pred HHhcccCccHHHHHHHHHHHHHHHHHH---HHHHHHhhHh-HHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHhhcc
Confidence 344444555677788999999998763 3344444444 677888888999988776777777777778888888877
Q ss_pred CCCCCCCchHHHHHHhhHHHHHHHHHHHH
Q 016313 200 PFPCPNSHNFHEMRRCFSELKQQLDRKLR 228 (391)
Q Consensus 200 PFs~~~~~~Fq~v~~~~ssLL~kL~~~k~ 228 (391)
==.. ...++.+--.++.+.++|+....
T Consensus 110 ~egc--vr~l~~v~ie~~~lkkkL~~~f~ 136 (150)
T KOG4747|consen 110 IEGC--VRCLQQVKIEYSLLKKKLETLFQ 136 (150)
T ss_pred chhH--hhchHHHHHHHHHHHHHHHHHHH
Confidence 4432 22467777777777777765544
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=57.42 E-value=1.2e+02 Score=30.70 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=45.8
Q ss_pred hhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCC---CcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 298 AKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGR---DKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 298 aakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~---~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
+++|.- .|+..-.|++.|+.+|.+.-..++-+.+.++ ....-++.++.+.+....+...+||-===+.|+
T Consensus 72 aaRGNt----~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLa 144 (302)
T PF05508_consen 72 AARGNT----SLESALPLTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINLA 144 (302)
T ss_pred HhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 778864 5688889999999999998888777766222 123344566666666666666666543333333
No 15
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.32 E-value=1.9e+02 Score=26.97 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHH---HHHHHhhhhHHHh
Q 016313 284 LAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVV---KQLRRNQQNFTDQ 360 (391)
Q Consensus 284 ~~kke~al~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv---~eLkk~~~~f~~q 360 (391)
+..+......++..+.++.--+.-.-..+.+-++.+..+++.+-.-+..|+..|++ ...++.+ .++......+.++
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e-dLAr~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE-DLAREALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445666777777777777777788888888899999999999999999874 2333322 2333344444455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016313 361 LKDLEEHICLCFNTVNR 377 (391)
Q Consensus 361 LeELEEhv~lCf~tInr 377 (391)
++.++.++..--..|.+
T Consensus 107 ~~~~~~~~~~l~~~l~~ 123 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEE 123 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444444444433
No 16
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=50.61 E-value=38 Score=32.22 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 016313 216 FSELKQQLDRKLRKSHSRVRFFSRATS 242 (391)
Q Consensus 216 ~ssLL~kL~~~k~K~~rKlk~~r~~~~ 242 (391)
.+..|.+|+...+++.||-.+++...-
T Consensus 72 ne~~L~~L~~el~~~kRk~~il~~~~l 98 (195)
T PF01616_consen 72 NEQILPKLKHELRKLKRKRRILHIVEL 98 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999988777665433
No 17
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=50.00 E-value=1.5e+02 Score=28.79 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=48.7
Q ss_pred Hhhccceehhc-ccccHHHHHHHHHHHhhh-----hHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhH
Q 016313 297 AAKKGIYVLNN-DLDTIDRLVARLYTAVEG-----DKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQL 361 (391)
Q Consensus 297 aaakGtyIl~~-DLDTIsrLV~RL~deIE~-----~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qL 361 (391)
+|+-|-|+-.+ +-|.+...++|=+.+++. ...++++-.+++=++...+.+++++.|+.+.|.+.+
T Consensus 65 SMa~GeYls~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~ 135 (234)
T cd02433 65 SMAAGEYVSVTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTL 135 (234)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHH
Confidence 57788888666 477888888888887765 345566666666667788899999999887776654
No 18
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=48.29 E-value=1.1e+02 Score=33.71 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHHHHhhccceehhcccccHHHHHHHHHHHhhh
Q 016313 291 HVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEG 325 (391)
Q Consensus 291 l~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~ 325 (391)
+..+++.+..|-+-++.++ ...+++|..+++.
T Consensus 90 ~~~~l~~~~~~~~~~~~~l---~~~~~~l~~~~~~ 121 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQL---KDNIAQLNQEIAE 121 (779)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455666666655555554 4555566555544
No 19
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.80 E-value=4.8e+02 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhHHHhHHHHHHHH
Q 016313 341 HSIQEVVKQLRRNQQNFTDQLKDLEEHI 368 (391)
Q Consensus 341 ~~vkevv~eLkk~~~~f~~qLeELEEhv 368 (391)
..+++++++.-++-....++++.+..|+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666666665
No 20
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.96 E-value=1.4e+02 Score=28.55 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=62.7
Q ss_pred cccccchhHHHHHHHHHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCC-CcchHHHHHHHHHHhh
Q 016313 276 CTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGR-DKHSIQEVVKQLRRNQ 354 (391)
Q Consensus 276 ~~~w~~~~~~kke~al~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~-~~~~vkevv~eLkk~~ 354 (391)
..-|=--.++|....+.++|..+.+++---.++-+.-..||++ |.|.++.--+-=+..-+ .......-++.++...
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl 169 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKR---EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDL 169 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Confidence 3357666676555556677777766655434566666777776 66666664433332210 1122234467788888
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 355 QNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386 (391)
Q Consensus 355 ~~f~~qLeELEEhv~lCf~tInrAR~lVLqeI 386 (391)
+...+|++-||+|+ +.|..+|+.+
T Consensus 170 ~~ie~QV~~Le~~L--------~~k~~eL~~L 193 (195)
T PF12761_consen 170 DTIEEQVDGLESHL--------SSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHh
Confidence 99999999999998 5566666653
No 21
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=44.28 E-value=36 Score=32.64 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=45.7
Q ss_pred Hhhccceehhc-ccccHHHHHHHHHHHhhhhH-----HHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHH
Q 016313 297 AAKKGIYVLNN-DLDTIDRLVARLYTAVEGDK-----QLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKD 363 (391)
Q Consensus 297 aaakGtyIl~~-DLDTIsrLV~RL~deIE~~~-----~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeE 363 (391)
+|+-|.|+-.+ +-|...+..+|-+.++++.. .+.++-..++-.++..+.+++++-|+.+.|.+.+-.
T Consensus 48 SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 48 SMAAGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHH
Confidence 46667776555 36677777777777775543 344555555556677889999999998888776544
No 22
>PRK11352 regulator protein FrmR; Provisional
Probab=43.47 E-value=1.9e+02 Score=24.05 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 016313 313 DRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVN---RARSLLLQEIH 387 (391)
Q Consensus 313 srLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tIn---rAR~lVLqeI~ 387 (391)
..++.||+ +|++-..-+.-.++++.++..+=.=+...+.-..+++. .=||.|+..|...-. .-|...++++.
T Consensus 9 ~~ll~RL~-Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~--~ile~hl~~cv~~~~~~~~~~~~~i~el~ 83 (91)
T PRK11352 9 KKVLTRVR-RIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMA--EVLESHIRETFDRNDCYSREVSQSVDDTI 83 (91)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhccCccchHHHHHHHH
Confidence 34555554 24444444444556666544332223333444444433 448999999998874 22555666654
No 23
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=43.46 E-value=26 Score=27.57 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.0
Q ss_pred HhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhHHH
Q 016313 130 LTRLVSTYFD-----HSENTTNLCLLLHQSIYRARELYAAL 165 (391)
Q Consensus 130 l~~Lv~dYFd-----~S~~a~d~C~~Llk~I~~aR~~y~~I 165 (391)
|..|++.|.. .+.+|+|+|..+++|+++-+.....+
T Consensus 13 LM~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~L 53 (64)
T PF03511_consen 13 LMGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLVL 53 (64)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 3456666653 56799999999999999887765543
No 24
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.29 E-value=96 Score=35.66 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=54.5
Q ss_pred eehhcccccHHHHHHHHHHHhhhhHHHHHHHH-hhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016313 303 YVLNNDLDTIDRLVARLYTAVEGDKQLVRFGL-ERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380 (391)
Q Consensus 303 yIl~~DLDTIsrLV~RL~deIE~~~~~v~fal-e~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~ 380 (391)
-.+.+.|||...-+.|-...+|.-.+.+..+. +.......++..+.|-|.+.++|-+.+.|||..-+.-.+++.+-+-
T Consensus 294 k~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 294 KELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH
Confidence 34556666666666666555555555554442 2222345688889999999999999999999998888888776553
No 25
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.18 E-value=86 Score=31.59 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCcchHHHHHHHHHHhhhhH-------HHhHHHHHHHHHHHHHHHHH
Q 016313 329 LVRFGLERGRDKHSIQEVVKQLRRNQQNF-------TDQLKDLEEHICLCFNTVNR 377 (391)
Q Consensus 329 ~v~fale~~~~~~~vkevv~eLkk~~~~f-------~~qLeELEEhv~lCf~tInr 377 (391)
|-+-|||.+.-+...+.++||-||...-+ ...|-|=...|-.+|.+||-
T Consensus 101 MrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 101 MREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINI 156 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhh
Confidence 45678887665555555555555554444 44444556778899999984
No 26
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.03 E-value=1.5e+02 Score=23.81 Aligned_cols=68 Identities=16% Similarity=0.351 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcCCCCCCC-CCchHHHHHHhhHHHHHHHHHHHHh
Q 016313 151 LHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCP-NSHNFHEMRRCFSELKQQLDRKLRK 229 (391)
Q Consensus 151 Llk~I~~aR~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~NPFs~~-~~~~Fq~v~~~~ssLL~kL~~~k~K 229 (391)
+...|+.++.+|..+...|.... .-+..+.+.....+||+.. +......+..+-..+-.+++.-+++
T Consensus 19 ~~~~l~el~~sQ~~L~~~i~~~~------------~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 19 LDQQLQELRQSQEELLQQIDRLN------------EKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999998888775321 1233444434445577543 4444666666666666666555444
Q ss_pred h
Q 016313 230 S 230 (391)
Q Consensus 230 ~ 230 (391)
+
T Consensus 87 ~ 87 (92)
T PF14712_consen 87 A 87 (92)
T ss_pred H
Confidence 4
No 27
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.87 E-value=92 Score=25.94 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=28.2
Q ss_pred HHHHhhccceehh----cccccHHHHHHHHHHHhhhhHHHHHHHHhhCC
Q 016313 294 QLDAAKKGIYVLN----NDLDTIDRLVARLYTAVEGDKQLVRFGLERGR 338 (391)
Q Consensus 294 QldaaakGtyIl~----~DLDTIsrLV~RL~deIE~~~~~v~fale~~~ 338 (391)
+|++..+|..-.. .+-.....-+.=|.+.|||.=.+.+||+|+..
T Consensus 7 rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~r 55 (86)
T PF12711_consen 7 RLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIR 55 (86)
T ss_pred HHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4555555544322 22244444556677888888899999999854
No 28
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.06 E-value=50 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=14.1
Q ss_pred HHHHHHhhhh----HHHhHHHHHHHHH
Q 016313 347 VKQLRRNQQN----FTDQLKDLEEHIC 369 (391)
Q Consensus 347 v~eLkk~~~~----f~~qLeELEEhv~ 369 (391)
++.||++... -.++|++||+||.
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444 6677788888774
No 29
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.75 E-value=4.5e+02 Score=26.67 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016313 250 GTAVAVTIAAAA 261 (391)
Q Consensus 250 aa~~av~i~avv 261 (391)
++-.++.|.+++
T Consensus 107 ~vsGilsIlGLa 118 (313)
T PF05461_consen 107 AVSGILSILGLA 118 (313)
T ss_pred HHhhHHHHHhHH
Confidence 333334444443
No 30
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.09 E-value=2.4e+02 Score=23.00 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016313 343 IQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLL 382 (391)
Q Consensus 343 vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lV 382 (391)
+.++=++-+.....+..+++.|+.++..-..+|..+..++
T Consensus 63 l~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 63 LEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444556777777777777777777777666554
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.96 E-value=3.4e+02 Score=24.65 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=29.0
Q ss_pred cccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHH
Q 016313 307 NDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLE 365 (391)
Q Consensus 307 ~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELE 365 (391)
++++.++..+..+..+++..+....-..+ .....++-++.++.....+.+.+.+|.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRE---LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766655433321 122233344444444444444444444
No 32
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=35.25 E-value=1.8e+02 Score=21.45 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Q 016313 313 DRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVN 376 (391)
Q Consensus 313 srLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tIn 376 (391)
.++..-|||.|-+.+..+.+-++. ....+.+..+...+.++++.+.+..+...++
T Consensus 3 ~rIAreLHD~v~q~L~~i~~~l~~---------~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R 57 (68)
T PF07730_consen 3 RRIARELHDGVGQSLTAIKMQLEA---------LRRRLADDPEEAREELEEIRELLREALQELR 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---------HHhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999888666443 2233344555777777777777776655443
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.85 E-value=4.4e+02 Score=30.03 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=34.5
Q ss_pred hcccccHHHH-HHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 306 NNDLDTIDRL-VARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384 (391)
Q Consensus 306 ~~DLDTIsrL-V~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLq 384 (391)
..|||++..+ ..+++++++...- -.+++- ..+-..|++.+.........+++|-+.....-..++..|+-+..
T Consensus 212 ~~~L~~~~~~lg~~i~~~l~~~~~---~~L~~i---~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~ 285 (806)
T PF05478_consen 212 SSDLDNIGSLLGGDIQDQLGSNVY---PALDSI---LDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNN 285 (806)
T ss_pred HHHHHhccchhhHHHHHHHhhhhH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777654 4566666653322 222221 01122445555555555555555555554444445444444433
No 34
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=33.94 E-value=1.9e+02 Score=31.07 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=50.5
Q ss_pred ccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcc-hHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 016313 300 KGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKH-SIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRA 378 (391)
Q Consensus 300 kGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~-~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrA 378 (391)
-|-+-.-.|-|-|+.-.++|..++.-.-+- +...+. .++.+=+|+.. ..|.+-|++|..+|..|+.-+||+
T Consensus 394 ded~pasdddDEvlaeLR~lqaeLk~vS~~------N~k~k~~Ll~la~eE~a~--qe~~q~lddlDkqI~qaYvKr~r~ 465 (516)
T KOG4191|consen 394 DEDRPASDDDDEVLAELRKLQAELKAVSAH------NRKKKHDLLRLAPEEMAR--QEFQQVLDDLDKQIEQAYVKRNRS 465 (516)
T ss_pred ccCCCcccchHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566678888888888888887644322 111122 23333344433 468999999999999999999999
Q ss_pred HHH
Q 016313 379 RSL 381 (391)
Q Consensus 379 R~l 381 (391)
|..
T Consensus 466 ~kk 468 (516)
T KOG4191|consen 466 RKK 468 (516)
T ss_pred HHh
Confidence 864
No 35
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=33.26 E-value=2.9e+02 Score=23.08 Aligned_cols=53 Identities=9% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Q 016313 317 ARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTV 375 (391)
Q Consensus 317 ~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tI 375 (391)
+|.+-.|++...| ++.+.++..+=.-+.-.+.-...++..+ |+.|+..|...-
T Consensus 16 ~RIeGQv~gI~~M----iee~~~C~dIl~Ql~Avr~Al~~~~~~v--l~~hl~~cv~~~ 68 (90)
T PRK15039 16 SKIQGQVVALKKM----LDEPHECAAVLQQIAAIRGAVNGLMREV--IKGHLTEHIVHQ 68 (90)
T ss_pred HHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcc
Confidence 3444444444444 4455555444334455555556666655 889998887754
No 36
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=33.00 E-value=9.8 Score=30.72 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCchhhHhhhhccCCChHHHHHHHhccCCchHhHHHHHHHHhhHH
Q 016313 99 NEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSEN 143 (391)
Q Consensus 99 ~~~s~~~~~~~lLeP~qe~v~~il~~~k~~~l~~Lv~dYFd~S~~ 143 (391)
.+|..+.++++-++--.+..+|.+...|.|||..=+..||+.|.+
T Consensus 3 ee~~lq~lfsqY~qt~TdYgKDL~Ekvk~pElqsQakaYfektqe 47 (76)
T PF04711_consen 3 EEPDLQSLFSQYFQTVTDYGKDLVEKVKGPELQSQAKAYFEKTQE 47 (76)
T ss_dssp BSSTTHHHHHHHHHHHHHHHHHHHHHHHSHHTSSTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 355556666776777778888888888999999999999998874
No 37
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.99 E-value=3.2e+02 Score=22.87 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=6.4
Q ss_pred HHHHHHHHH
Q 016313 364 LEEHICLCF 372 (391)
Q Consensus 364 LEEhv~lCf 372 (391)
|++|+..|.
T Consensus 57 l~~hl~~cv 65 (89)
T COG1937 57 LEEHLKECV 65 (89)
T ss_pred HHHHHHHHH
Confidence 667777776
No 38
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=30.51 E-value=1e+02 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 016313 343 IQEVVKQLRRNQQNFTDQLKDLEEHICL 370 (391)
Q Consensus 343 vkevv~eLkk~~~~f~~qLeELEEhv~l 370 (391)
++..-++|+........+|+||++-|.-
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777777766544
No 39
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=28.88 E-value=2.1e+02 Score=30.11 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016313 314 RLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIH 387 (391)
Q Consensus 314 rLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLqeI~ 387 (391)
.-+.+|+|.+|..++-|+-+-+. -...+.+|-+--..+|+.++ ||+.=+-+-.+-|.+.+++|.
T Consensus 177 eq~kKlqdrveK~k~evqktkek------Yektl~el~~yt~~YmE~Me----qvFe~CQ~fE~~Rl~Ffkeil 240 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEK------YEKTLAELNKYTPVYMEDME----QVFEQCQQFEEKRLQFFKEIL 240 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888777444 34678889998888888774 777777888899999888884
No 40
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=28.75 E-value=8.3e+02 Score=28.26 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=18.6
Q ss_pred CCCchHHHHHHhhHHHHHHHHHHHHh
Q 016313 204 PNSHNFHEMRRCFSELKQQLDRKLRK 229 (391)
Q Consensus 204 ~~~~~Fq~v~~~~ssLL~kL~~~k~K 229 (391)
.|...+..+-+.|..||+|++.++++
T Consensus 659 ~F~~ale~~~~~~~l~lKK~DKK~eR 684 (803)
T PLN03083 659 AFMSTLRDLAEESGLRLKKLDKKLER 684 (803)
T ss_pred HHHHHHHHHHHHhcccccccchHHHH
Confidence 35566788888888888888665443
No 41
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.81 E-value=2e+02 Score=22.97 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHIC 369 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~ 369 (391)
|.+..+=..+++.-+-|..+++-.++||+.-+.+..--++|......|.++-.+|....+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445666667777778888999999999887566666777888888888888888877654
No 42
>PRK09546 zntB zinc transporter; Reviewed
Probab=27.65 E-value=6e+02 Score=25.22 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=47.2
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcCCCC-CCC
Q 016313 130 LTRLVSTYFDHSENTTNLCLLLHQSIYRA----RELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPF-PCP 204 (391)
Q Consensus 130 l~~Lv~dYFd~S~~a~d~C~~Llk~I~~a----R~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~NPF-s~~ 204 (391)
+..++..||+.-.+.-+-...|+..|.+- +..-..+++-+..+. ....--.+.+..+....+|+ +.+
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lr--------r~l~p~~~~l~~L~~~~~~~~~~~ 219 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMR--------RYMAPQRDVFARLASERLPWMSDD 219 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCcccChH
Confidence 45677788887777776666666655321 111111222222111 00001122333444444443 444
Q ss_pred CCchHHHHHHhhHHHHHHHHHHHH
Q 016313 205 NSHNFHEMRRCFSELKQQLDRKLR 228 (391)
Q Consensus 205 ~~~~Fq~v~~~~ssLL~kL~~~k~ 228 (391)
....|++++++...+++.+++.+.
T Consensus 220 ~~~~l~Dv~d~~~~~~~~l~~~~~ 243 (324)
T PRK09546 220 DRRRMQDIADRLGRGLDDLDACIA 243 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556699999888888877766654
No 43
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=27.59 E-value=2.9e+02 Score=24.58 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhh--------CCCcchHHHHHHHHHHhhhhHHHhHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLER--------GRDKHSIQEVVKQLRRNQQNFTDQLKDLE 365 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~--------~~~~~~vkevv~eLkk~~~~f~~qLeELE 365 (391)
|.+...|..+.+.+.+-..-++-+++. =+ .+-+.-|++|......+..+|+.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLg--vPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLG--VPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777766665555544444333 22 2334556666666666666666664
No 44
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.36 E-value=2e+02 Score=23.77 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=26.7
Q ss_pred CCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 337 GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 337 ~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
+++...++.-+++|++....+..+++++|+.+..-
T Consensus 66 ~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 66 GEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888877653
No 45
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.35 E-value=3.4e+02 Score=26.21 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016313 311 TIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLL 382 (391)
Q Consensus 311 TIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lV 382 (391)
.|+.........+.-+...++-|...-.. ....-...+++...+.++.++|.++-..-..+|..|+.++
T Consensus 182 ~i~~~L~~~~~kL~Dl~~~l~eA~~~~~e---a~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L 250 (264)
T PF06008_consen 182 AIRDDLNDYNAKLQDLRDLLNEAQNKTRE---AEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLL 250 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666444221 2233444455555555666666666666666666666554
No 46
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.98 E-value=3.9e+02 Score=25.53 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=36.0
Q ss_pred Hhhccceehhc-ccccHHHHHHHHHHHhhhh-----HHHHHHHHhhCCCcchHHHHHHHHHHhh
Q 016313 297 AAKKGIYVLNN-DLDTIDRLVARLYTAVEGD-----KQLVRFGLERGRDKHSIQEVVKQLRRNQ 354 (391)
Q Consensus 297 aaakGtyIl~~-DLDTIsrLV~RL~deIE~~-----~~~v~fale~~~~~~~vkevv~eLkk~~ 354 (391)
+|+-|-|+-.+ +-|.....++|=+.+|++. ..+.+.-..++-++...+.+++++.++.
T Consensus 53 SMa~G~yls~~sq~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~ 116 (218)
T cd02432 53 SMAAGEYVSVSSQRDTEKADIAKERRELAEDPEAELEELADIYEERGLSPELARQVADELMAKD 116 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 46666666444 4556666667777777665 3344444455555667778888887764
No 47
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=26.89 E-value=4.7e+02 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=20.0
Q ss_pred hccccccccchhHHHHHHHHHHHHHHhh--ccceehhc
Q 016313 272 AAPFCTAYFSPGLAKKQLAHVAQLDAAK--KGIYVLNN 307 (391)
Q Consensus 272 a~P~~~~w~~~~~~kke~al~~Qldaaa--kGtyIl~~ 307 (391)
..|...+|.-. ......+.++|+..+ ||.|+.+-
T Consensus 54 ~~~~l~gW~q~--~~~Lq~L~~rL~~le~~rg~Y~TiS 89 (148)
T PF12486_consen 54 PAPQLDGWHQG--MTQLQQLADRLNQLEEQRGKYMTIS 89 (148)
T ss_pred CchhhchHHHH--HHHHHHHHHHHHHHHHhcCCceeHH
Confidence 34444467432 223445667777765 89999743
No 48
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=26.71 E-value=69 Score=30.06 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.8
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 347 VKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 347 v~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
++.-|+....|++||+|||.|+--+
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~Q 131 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQ 131 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788889999999999887544
No 49
>PRK11020 hypothetical protein; Provisional
Probab=25.83 E-value=2.7e+02 Score=24.56 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHH
Q 016313 312 IDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEE 366 (391)
Q Consensus 312 IsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEE 366 (391)
+..-+.+|+|.++..+.-.+-+..+++. +++.++.+....+.++|+-|-.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-----~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-----EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778899998888888778888764 7778888888888888877754
No 50
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=25.56 E-value=72 Score=22.45 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhhHHHhHHHHHH
Q 016313 345 EVVKQLRRNQQNFTDQLKDLEE 366 (391)
Q Consensus 345 evv~eLkk~~~~f~~qLeELEE 366 (391)
-+++||.|-..++...++|||+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 5789999999999999999985
No 51
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.91 E-value=4.4e+02 Score=25.79 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhC
Q 016313 291 HVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERG 337 (391)
Q Consensus 291 l~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~ 337 (391)
+..++++-..+-.=+.+.+|.+..-|++|+..||....-++-..++.
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444455556678888899999999999988776655555443
No 52
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.82 E-value=7.6e+02 Score=25.08 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 016313 284 LAKKQLAHVAQL 295 (391)
Q Consensus 284 ~~kke~al~~Ql 295 (391)
+-+-+.+..+-+
T Consensus 40 yQ~~EQAr~~A~ 51 (301)
T PF06120_consen 40 YQNAEQARQEAI 51 (301)
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 53
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.14 E-value=4.1e+02 Score=21.49 Aligned_cols=61 Identities=7% Similarity=0.045 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHH---HhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFG---LERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fa---le~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
++.+.++..|.||+.||+.--.-- .+.-+. ..-...=+.|..+...+.+.||-=++|||..
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~-s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDP-SLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999998543222 222211 1112334556666677777777777887754
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.81 E-value=1e+03 Score=25.93 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=52.2
Q ss_pred ceeh-hcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016313 302 IYVL-NNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380 (391)
Q Consensus 302 tyIl-~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~ 380 (391)
+|.+ ..|+++++.+-..|+.--+.......-.-+.......++.-++++.+....+.++.+++.+.+...-.....||.
T Consensus 339 sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~ 418 (569)
T PRK04778 339 SYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEARE 418 (569)
T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 556666666655555544444433322222222244677788888888888888888888888888888888876
Q ss_pred HH
Q 016313 381 LL 382 (391)
Q Consensus 381 lV 382 (391)
-+
T Consensus 419 kL 420 (569)
T PRK04778 419 KL 420 (569)
T ss_pred HH
Confidence 53
No 55
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.75 E-value=1.6e+02 Score=28.87 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhhh
Q 016313 209 FHEMRRCFSELKQQLDRKLRKSHSRVRFF 237 (391)
Q Consensus 209 Fq~v~~~~ssLL~kL~~~k~K~~rKlk~~ 237 (391)
...+.+...+|+++++....+.+++.+.+
T Consensus 122 i~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888888777777776655
No 56
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=22.44 E-value=4.2e+02 Score=21.45 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=31.5
Q ss_pred HHHHHHH---HHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Q 016313 314 RLVARLY---TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVN 376 (391)
Q Consensus 314 rLV~RL~---deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tIn 376 (391)
.++.||+ -.|+....| ++.+.++..+=.=+.-.++-...+...+ |++|+..|+....
T Consensus 6 ~ll~RL~rIeGQv~gI~~M----iee~~~C~dIl~Qi~Av~~Al~~~~~~v--l~~hl~~c~~~~~ 65 (85)
T PF02583_consen 6 DLLNRLKRIEGQVRGIERM----IEEDRDCEDILQQIAAVRSALDKVGKLV--LEDHLEHCLVEAI 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHTTE-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHh
Confidence 3444444 444444444 3555554444333445556666666554 7899999987543
No 57
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.99 E-value=2.5e+02 Score=30.34 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHHhhhhHHHHHHHHhh------CCCcc-hHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016313 309 LDTIDRLVARLYTAVEGDKQLVRFGLER------GRDKH-SIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSL 381 (391)
Q Consensus 309 LDTIsrLV~RL~deIE~~~~~v~fale~------~~~~~-~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~l 381 (391)
+..|+.-|..|+..+.+.+.+-++-+.. ..|.+ .+|+|-++..+....|-+..-|+|+. +-|...|-.|-..
T Consensus 208 ~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrlaset~dn-D~aL~eILqanD~ 286 (594)
T KOG1086|consen 208 LEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRLASETEDN-DPALAEILQANDN 286 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccccC-cHHHHHHHhhhhh
Confidence 4455555666655555555444443332 11334 89999999999999999999999999 9999999888888
Q ss_pred HHHHHhhc
Q 016313 382 LLQEIHLH 389 (391)
Q Consensus 382 VLqeI~~~ 389 (391)
+-+-|..|
T Consensus 287 ltrvi~~y 294 (594)
T KOG1086|consen 287 LTRVINLY 294 (594)
T ss_pred HHhhhhhc
Confidence 77777654
No 58
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.68 E-value=6e+02 Score=22.95 Aligned_cols=45 Identities=31% Similarity=0.390 Sum_probs=39.3
Q ss_pred hHhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHhHHHHHHHhcCC
Q 016313 129 TLTRLVSTYFDHSENTTNL---CLLLHQSIYRARELYAALYELFDIFP 173 (391)
Q Consensus 129 ~l~~Lv~dYFd~S~~a~d~---C~~Llk~I~~aR~~y~~I~~aL~~~~ 173 (391)
.|..|...|-..|.+|..| |+.|++-=.+-..-...|..-|+.|+
T Consensus 29 ~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 29 QLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 3778999999999999887 99999988888888888988888875
No 59
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=21.57 E-value=1.2e+03 Score=26.29 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhcccee
Q 016313 284 LAKKQLAHVAQLDAAKKGIYV 304 (391)
Q Consensus 284 ~~kke~al~~QldaaakGtyI 304 (391)
..+....+...+..++.|-+-
T Consensus 356 i~~pl~~l~~~~~~ia~gdl~ 376 (968)
T TIGR02956 356 VILRLNQHTQALLRLALGDLD 376 (968)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 334444566677778888653
No 60
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.42 E-value=4.1e+02 Score=20.86 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHhhhhHHHhHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 016313 341 HSIQEVVKQLRRNQQNFTDQLKDLEEHIC-----LCFNTVNRARSLLLQ 384 (391)
Q Consensus 341 ~~vkevv~eLkk~~~~f~~qLeELEEhv~-----lCf~tInrAR~lVLq 384 (391)
..+...+.+++.........|+.|+.... .+.....|.|.-.++
T Consensus 45 ~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~ 93 (103)
T PF00804_consen 45 RELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQ 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHH
Confidence 34666777777777777777777777742 344445555544443
No 61
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.27 E-value=1.3e+02 Score=25.50 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=35.4
Q ss_pred cccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 016313 307 NDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICL 370 (391)
Q Consensus 307 ~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~l 370 (391)
.+++...+-+..++.+++|+=.- +|-+.++.-|.+++........+|+.++..+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~--------~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTR--------DDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445677777788888877322 122346666777777777777777777665554
No 62
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.95 E-value=1.8e+02 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHhhhhHHHhHHHHHH
Q 016313 340 KHSIQEVVKQLRRNQQNFTDQLKDLEE 366 (391)
Q Consensus 340 ~~~vkevv~eLkk~~~~f~~qLeELEE 366 (391)
....+.++...+.+.+.+..+|.+||.
T Consensus 52 Fd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 52 FDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345668999999999999999999985
No 63
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=20.12 E-value=3e+02 Score=26.99 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=36.7
Q ss_pred hccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCC
Q 016313 299 KKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRD 339 (391)
Q Consensus 299 akGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~ 339 (391)
--+-.++.|-|..++.-.+|+++++++.++.++..+-.|..
T Consensus 128 Pi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat 168 (250)
T PF03649_consen 128 PIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGAT 168 (250)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Confidence 34566788999999999999999999999999999999876
Done!