Query 016313
Match_columns 391
No_of_seqs 97 out of 104
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 70.2 2.5 8.5E-05 26.2 2.0 17 220-236 10-26 (27)
2 2r25_A Phosphorelay intermedia 44.7 51 0.0017 29.3 6.8 66 130-199 28-93 (167)
3 3ol1_A Vimentin; structural ge 38.7 1.6E+02 0.0056 24.2 9.2 86 281-369 15-100 (119)
4 1deq_A Fibrinogen (alpha chain 36.8 1.3E+02 0.0044 30.2 8.9 67 298-374 96-163 (390)
5 4adz_A CSOR; transcription, co 35.6 2.1E+02 0.0072 24.6 9.0 56 315-376 57-112 (136)
6 3t98_B Nucleoporin NUP58/NUP45 34.7 37 0.0013 27.4 3.9 29 345-373 12-40 (93)
7 1deq_A Fibrinogen (alpha chain 33.4 1.1E+02 0.0039 30.6 7.9 45 343-387 97-143 (390)
8 1lq7_A Alpha3W; three helix bu 32.9 56 0.0019 24.0 4.2 18 347-364 27-44 (67)
9 3zcc_A HAMP, osmolarity sensor 30.1 83 0.0028 23.3 5.2 49 279-327 2-54 (114)
10 4g3b_A Alpha4F3D; alpha helix, 30.1 30 0.001 21.2 2.0 20 212-235 6-25 (26)
11 3mtu_E Head morphogenesis prot 26.5 66 0.0023 25.2 3.9 25 345-369 30-54 (77)
12 2fjc_A Antigen TPF1; mini ferr 25.5 2.1E+02 0.0071 24.1 7.4 51 310-372 101-151 (156)
13 3aad_A Transcription initiatio 25.2 2.9E+02 0.0099 26.0 9.1 40 342-384 251-290 (292)
14 3iq1_A DPS family protein; csg 24.0 2.3E+02 0.0077 23.9 7.4 52 308-371 103-154 (159)
15 3kwo_A Putative bacterioferrit 23.3 2.4E+02 0.0084 23.5 7.4 54 308-373 91-144 (152)
16 4eve_A Neutrophil-activating p 23.2 2.4E+02 0.0081 24.1 7.4 108 208-371 52-159 (164)
17 2c2u_A DPS, DNA-binding stress 22.5 2.3E+02 0.0078 25.5 7.4 53 310-374 148-200 (207)
18 3aai_A Copper homeostasis oper 22.4 2.9E+02 0.01 21.9 7.7 73 312-387 13-88 (94)
19 3mq9_A Bone marrow stromal ant 21.8 1.3E+02 0.0044 29.7 6.1 34 343-376 395-428 (471)
20 1o9r_A Agrobacterium tumefacie 21.7 2.2E+02 0.0074 24.1 6.8 49 310-370 105-153 (162)
21 2cf7_A DPR; peroxide resistanc 21.4 1.9E+02 0.0064 24.8 6.3 51 310-372 106-156 (165)
22 2chp_A MRGA, metalloregulation 21.0 2.4E+02 0.008 23.7 6.8 50 310-371 99-148 (153)
23 3qfl_A MLA10; coiled-coil, (CC 20.2 3.4E+02 0.012 21.7 10.6 58 311-368 23-82 (115)
24 3ghg_A Fibrinogen alpha chain; 20.2 1.8E+02 0.0063 30.3 6.8 23 347-369 133-155 (562)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=70.16 E-value=2.5 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhhhhh
Q 016313 220 KQQLDRKLRKSHSRVRF 236 (391)
Q Consensus 220 L~kL~~~k~K~~rKlk~ 236 (391)
|+.|+.+.+|+++|+|.
T Consensus 10 ledlqerlrklrkklrs 26 (27)
T 3twe_A 10 LEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34455555888888763
No 2
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=44.66 E-value=51 Score=29.26 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=39.9
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcCC
Q 016313 130 LTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDN 199 (391)
Q Consensus 130 l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~N 199 (391)
+..+|..||+.+.+.. ..|.+++. ....+..+..+.|+|...+..++-.+-...-..+..+...+|
T Consensus 28 v~elV~~F~edse~~l---~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n 93 (167)
T 2r25_A 28 SKGLIIQFIDQAQTTF---AQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhHHHHH---HHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999988653 33444443 122356777777777644333444444444456677777777
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.73 E-value=1.6e+02 Score=24.18 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHh
Q 016313 281 SPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQ 360 (391)
Q Consensus 281 ~~~~~kke~al~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~q 360 (391)
.+++..+...+..|||.+.+..--+.-++|++...++.+....|.-..+.. .+++ +...++-++++.--....+..+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~-~~E~--di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE-EAEN--TLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHH--HHHHhhhcccHHHHHHHHHHHH
Confidence 455666677889999997755555566788888888887776665544322 2222 2334555555555555556666
Q ss_pred HHHHHHHHH
Q 016313 361 LKDLEEHIC 369 (391)
Q Consensus 361 LeELEEhv~ 369 (391)
++-|.|-+.
T Consensus 92 iesL~eEl~ 100 (119)
T 3ol1_A 92 VESLQEEIA 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.84 E-value=1.3e+02 Score=30.18 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=45.8
Q ss_pred hhccceehhcccccH-HHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Q 016313 298 AKKGIYVLNNDLDTI-DRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNT 374 (391)
Q Consensus 298 aakGtyIl~~DLDTI-srLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~t 374 (391)
+=|+.....+|.|++ ...-.-|+..|+.++..|+-= +. -|+.|+.........|.-||.-|+.|.+.
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q---------~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ---------VQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH---------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346667667777654 333345555666666555332 32 57888888899999999999999998764
No 5
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=35.57 E-value=2.1e+02 Score=24.60 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Q 016313 315 LVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVN 376 (391)
Q Consensus 315 LV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tIn 376 (391)
-++|.+-.|+....|+ |.+.++..+-.=+.-.++-...+...| |++|+.-|...-.
T Consensus 57 RLkRIeGQvrGI~rMI----Eedr~C~DIL~QlaAVrsAL~~v~~~I--Le~Hl~~CV~~ai 112 (136)
T 4adz_A 57 RLRRIEGQIRGLQRMV----DEDVYCIDILTQVSASTKALQSFALQL--LEEHLRHCVADAA 112 (136)
T ss_dssp HHHHHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3444444555555444 344443333222333344444444433 6777777776543
No 6
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.68 E-value=37 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Q 016313 345 EVVKQLRRNQQNFTDQLKDLEEHICLCFN 373 (391)
Q Consensus 345 evv~eLkk~~~~f~~qLeELEEhv~lCf~ 373 (391)
..+.++++....+..+||+||.|+.-++.
T Consensus 12 ~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 12 VLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 67889999999999999999999987654
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.44 E-value=1.1e+02 Score=30.58 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Q 016313 343 IQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNR--ARSLLLQEIH 387 (391)
Q Consensus 343 vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInr--AR~lVLqeI~ 387 (391)
++..+++...+...|.+-.+|||.|+-.-=.+|+. .+.-|||.++
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55556666677777777777777777665555532 2344444443
No 8
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=32.93 E-value=56 Score=24.00 Aligned_cols=18 Identities=11% Similarity=0.573 Sum_probs=12.3
Q ss_pred HHHHHHhhhhHHHhHHHH
Q 016313 347 VKQLRRNQQNFTDQLKDL 364 (391)
Q Consensus 347 v~eLkk~~~~f~~qLeEL 364 (391)
+++|+|+.+.+.+.++||
T Consensus 27 ieelkkkweelkkkieel 44 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777777777665
No 9
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=30.10 E-value=83 Score=23.31 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=23.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhcccee---hhcc-cccHHHHHHHHHHHhhhhH
Q 016313 279 YFSPGLAKKQLAHVAQLDAAKKGIYV---LNND-LDTIDRLVARLYTAVEGDK 327 (391)
Q Consensus 279 w~~~~~~kke~al~~QldaaakGtyI---l~~D-LDTIsrLV~RL~deIE~~~ 327 (391)
|+...+.+-...+...++.++.|-+- -... -|-+..|...+..-.+...
T Consensus 2 ~~~~~i~~pl~~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~ 54 (114)
T 3zcc_A 2 SHMSTITRPIIELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLK 54 (114)
T ss_dssp ---CTTHHHHHHHHHHHHHHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 44444444455666777777788653 2222 3445444444444333333
No 10
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=30.08 E-value=30 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=10.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhh
Q 016313 212 MRRCFSELKQQLDRKLRKSHSRVR 235 (391)
Q Consensus 212 v~~~~ssLL~kL~~~k~K~~rKlk 235 (391)
.|.......++| +|.++|||
T Consensus 6 ~ykeled~qerl----rk~rkklr 25 (26)
T 4g3b_A 6 XYKELEDXQERL----RKXRKKLR 25 (26)
T ss_dssp HHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHhc
Confidence 344444444555 56666654
No 11
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.45 E-value=66 Score=25.19 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhHHHhHHHHHHHHH
Q 016313 345 EVVKQLRRNQQNFTDQLKDLEEHIC 369 (391)
Q Consensus 345 evv~eLkk~~~~f~~qLeELEEhv~ 369 (391)
+.+.+||-+-..|.+.|++||+-++
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998763
No 12
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=25.47 E-value=2.1e+02 Score=24.08 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCF 372 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf 372 (391)
+-+..+++....-|+..+..++.|-+.++. -...-|.+.++++|+|+....
T Consensus 101 eml~~~l~~~~~~i~~~r~~i~~a~~~~D~------------~T~dll~~il~~~Ek~~w~L~ 151 (156)
T 2fjc_A 101 SALARVKRDFEYLSTRFSQTQVLAAESGDA------------VTDGIITDILRTLGKAIWMLG 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888899999999999776541 223446666777777776543
No 13
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=25.18 E-value=2.9e+02 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313 342 SIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384 (391)
Q Consensus 342 ~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLq 384 (391)
.+-....+|. ..|.+.++++++|+...-..|+.+|...++
T Consensus 251 ~i~~~A~~L~---~~~~~~~~~~~~~l~~le~~i~~~~~~~~~ 290 (292)
T 3aad_A 251 QYTKTAQEIV---NVCYQTLTEYDEHLTQLEKDICTAKEAALE 290 (292)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455554 467777888888888888888888876553
No 14
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=24.00 E-value=2.3e+02 Score=23.94 Aligned_cols=52 Identities=12% Similarity=0.280 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 308 DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
.-+-+..+++....-++..+..++.|-+.++. -...-|.+.++++|+|+..-
T Consensus 103 ~~eml~~ll~~~~~~i~~~r~~i~~ae~~~D~------------~T~dll~~~l~~~Ek~~WmL 154 (159)
T 3iq1_A 103 GRSSMQGLVDGFSILLHQQRDILELAGETGDE------------GTSALMSDYIREQEKLVWML 154 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCH------------HHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888899999999988776541 22344677788888888654
No 15
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=23.33 E-value=2.4e+02 Score=23.52 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Q 016313 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFN 373 (391)
Q Consensus 308 DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~ 373 (391)
.-+-+..+++....-++..+..++.|-+.++. -...-|.+.++++|+|+.....
T Consensus 91 ~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~------------~T~dll~~~l~~~Ek~~w~L~a 144 (152)
T 3kwo_A 91 PLEVIELIKQDYEYLLAEFKKLNEAAEKESDT------------TTAAFAQENIAKYEKSLWMIGA 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888899999999988776541 2234466677777777766443
No 16
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=23.19 E-value=2.4e+02 Score=24.13 Aligned_cols=108 Identities=15% Similarity=0.248 Sum_probs=66.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHH
Q 016313 208 NFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKK 287 (391)
Q Consensus 208 ~Fq~v~~~~ssLL~kL~~~k~K~~rKlk~~r~~~~vS~i~fvaa~~av~i~avviAahalagl~a~P~~~~w~~~~~~kk 287 (391)
+|..+|..+..+-..+...-+.+.+|++.+-+ .|... .+.+
T Consensus 52 ~F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg---------------------------------~P~~t------~~~~ 92 (164)
T 4eve_A 52 DFFNVHKATEEIYEEFADMFDDLAERIVQLGH---------------------------------HPLVT------LSEA 92 (164)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------------------CCCCC------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------------CCCCC------HHHH
Confidence 68888888888888887777777887633311 23221 1111
Q ss_pred HHHHHHHHHHhhccceehhcccccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHH
Q 016313 288 QLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEH 367 (391)
Q Consensus 288 e~al~~QldaaakGtyIl~~DLDTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEh 367 (391)
.. ...+.....|.| ..-+-+..+++....-|+..+..++.|-+.++. -...-|.+.++++|+|
T Consensus 93 ~~--~s~i~e~~~~~~---~~~eml~~ll~~~~~~i~~~r~~i~~aee~~D~------------~T~dll~~il~~~Ek~ 155 (164)
T 4eve_A 93 IK--LTRVKEETKTSF---HSKDIFKEILEDYKHLEKEFKELSNTAEKEGDK------------VTVTYADDQLAKLQKS 155 (164)
T ss_dssp HH--HCCSCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHH
T ss_pred HH--HcCCCcCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHH
Confidence 00 011112223443 344568888888999999999999999776541 2234466677888888
Q ss_pred HHHH
Q 016313 368 ICLC 371 (391)
Q Consensus 368 v~lC 371 (391)
+..-
T Consensus 156 ~WmL 159 (164)
T 4eve_A 156 IWML 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 17
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=22.52 E-value=2.3e+02 Score=25.48 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNT 374 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~t 374 (391)
+-+..+++....-|+..+..++.|-+.++. -...-|.+.|+++|+|+......
T Consensus 148 emL~~ll~~e~~~i~~~re~i~~aee~~D~------------~T~dLl~~il~~~EkhiW~L~a~ 200 (207)
T 2c2u_A 148 TQVADLVQDLSRVGKGYRDDSQACDEANDP------------VTADMYNGYAATIDKIRWMLQAI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 558888888888999999999999776541 12334566677788887765443
No 18
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=22.43 E-value=2.9e+02 Score=21.88 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCC-CcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Q 016313 312 IDRLVARLYTAVEGDKQLVRFGLERGR-DKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRA--RSLLLQEIH 387 (391)
Q Consensus 312 IsrLV~RL~deIE~~~~~v~fale~~~-~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrA--R~lVLqeI~ 387 (391)
-..+++||.- ||+-..-+.-.++.+. ++..+=.=+--.++-...+... =|++|+.-|...-... +.-.++++.
T Consensus 13 k~~~l~RLkR-ieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~--il~~Hl~~Cv~~~~~~~~~~~~i~el~ 88 (94)
T 3aai_A 13 REEARRRLLS-AKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM--VLRAHLKDHVATAHERGDVEEIVEELM 88 (94)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHC--------CHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHhcCCchHHHHHHHH
Confidence 4455555542 4444444444455655 5443322234444555555444 3889999999775432 334445443
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.82 E-value=1.3e+02 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Q 016313 343 IQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVN 376 (391)
Q Consensus 343 vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tIn 376 (391)
.+.+..+|++......+.+-++|.++..|.+|+-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 4467777888888888888889999999988874
No 20
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=21.74 E-value=2.2e+02 Score=24.07 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICL 370 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~l 370 (391)
+-+..+++....-|+..+..++.|-+.++. -...-|.+.++++|+|+..
T Consensus 105 eml~~~l~~~~~~i~~~r~~i~~a~~~~D~------------~T~dll~~il~~~Ek~~w~ 153 (162)
T 1o9r_A 105 DHLDALIERYGEVANMIRKAIDDSDEAGDP------------TTADIFTAASRDLDKSLWF 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHHHH
Confidence 457778888888889999999998776541 2234456667777777754
No 21
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=21.36 E-value=1.9e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCF 372 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf 372 (391)
+-+..+++....-|+..+..++.|-+.++. -...-|.+.++++|+|+....
T Consensus 106 eml~~~l~~~~~~i~~~r~~i~~a~~~~D~------------~T~dll~~il~~~Ek~~w~L~ 156 (165)
T 2cf7_A 106 EQLARVVEVFRYLAALFQKGFDVSDEEGDS------------VTNDIFNVAKASIEKHIWMLQ 156 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888889999999998776541 223446666777777776543
No 22
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=20.97 E-value=2.4e+02 Score=23.66 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
+-+..+++....-|+..+..++.|-+.++. -...-|.+.++++|+|+...
T Consensus 99 eml~~~l~~~~~~i~~~r~~i~~a~~~~D~------------~T~dll~~il~~~Ek~~w~L 148 (153)
T 2chp_A 99 EMVQALVNDYKQISSESKFVIGLAEENQDN------------ATADLFVGLIEEVEKQVWML 148 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888899988888766541 22344666777777777653
No 23
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.18 E-value=3.4e+02 Score=21.74 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHhhhhHHHHHHHHhhC--CCcchHHHHHHHHHHhhhhHHHhHHHHHHHH
Q 016313 311 TIDRLVARLYTAVEGDKQLVRFGLERG--RDKHSIQEVVKQLRRNQQNFTDQLKDLEEHI 368 (391)
Q Consensus 311 TIsrLV~RL~deIE~~~~~v~fale~~--~~~~~vkevv~eLkk~~~~f~~qLeELEEhv 368 (391)
.+..-|..|.++++.|.+..+-+-+.. .....++.-++++|.=.=.-.+-|++..-|+
T Consensus 23 gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 23 GVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778999999999999998886652 2235667777777765544444455444443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.17 E-value=1.8e+02 Score=30.34 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=12.1
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHH
Q 016313 347 VKQLRRNQQNFTDQLKDLEEHIC 369 (391)
Q Consensus 347 v~eLkk~~~~f~~qLeELEEhv~ 369 (391)
++.|+.+.......|.-||--|+
T Consensus 133 IrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
Done!