Query 016313
Match_columns 391
No_of_seqs 97 out of 104
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcta1 a.7.12.1 (A:9-107) Hyp 26.1 1.1E+02 0.0077 21.9 7.7 28 311-338 5-32 (99)
2 d1lgha_ f.3.1.1 (A:) Light-har 24.6 21 0.0015 23.8 2.4 7 270-276 37-43 (56)
3 d2htna1 a.25.1.1 (A:1-158) Bac 18.6 1.2E+02 0.0087 23.1 6.5 49 317-365 92-142 (158)
4 d1ji5a_ a.25.1.1 (A:) Dodecame 18.0 1.7E+02 0.012 21.9 7.3 51 312-374 90-140 (142)
5 d1wa8b1 a.25.3.1 (B:602-695) E 17.9 1.6E+02 0.011 20.7 7.6 60 312-371 17-78 (94)
6 d1sumb_ a.7.12.1 (B:) PhoU hom 16.2 2.5E+02 0.018 22.4 8.7 32 306-337 5-36 (225)
7 d1ivsa1 a.2.7.3 (A:797-862) Va 15.4 1.6E+02 0.012 19.7 7.2 58 312-369 2-63 (66)
8 d1s35a1 a.7.1.1 (A:1063-1168) 14.9 1.8E+02 0.013 20.0 6.4 66 306-371 28-105 (106)
9 d1u5pa1 a.7.1.1 (A:1662-1771) 14.0 2E+02 0.014 20.0 7.0 75 305-381 30-110 (110)
10 d1jgca_ a.25.1.1 (A:) Bacterio 13.5 2E+02 0.014 21.9 6.6 57 310-366 85-143 (160)
No 1
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.07 E-value=1.1e+02 Score=21.86 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHhhhhHHHHHHHHhhCC
Q 016313 311 TIDRLVARLYTAVEGDKQLVRFGLERGR 338 (391)
Q Consensus 311 TIsrLV~RL~deIE~~~~~v~fale~~~ 338 (391)
+++..+.+..+-+++|+..+=-|+.+++
T Consensus 5 ~i~~~l~~M~~~~~~ml~~a~~a~~~~D 32 (99)
T d1vcta1 5 SVKEIFIEMKDTVELMVDLAYASLLFGD 32 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4666666777777777766666655543
No 2
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=24.65 E-value=21 Score=23.75 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=3.2
Q ss_pred Hhhcccc
Q 016313 270 IVAAPFC 276 (391)
Q Consensus 270 l~a~P~~ 276 (391)
++|+|+.
T Consensus 37 vlaapgf 43 (56)
T d1lgha_ 37 VLAAPGF 43 (56)
T ss_dssp HHHSGGG
T ss_pred HHhcCCC
Confidence 3445543
No 3
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=18.60 E-value=1.2e+02 Score=23.06 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=28.7
Q ss_pred HHHHHHhhhhHHHHHHHHhhCCC--cchHHHHHHHHHHhhhhHHHhHHHHH
Q 016313 317 ARLYTAVEGDKQLVRFGLERGRD--KHSIQEVVKQLRRNQQNFTDQLKDLE 365 (391)
Q Consensus 317 ~RL~deIE~~~~~v~fale~~~~--~~~vkevv~eLkk~~~~f~~qLeELE 365 (391)
..-...++.....++.|.+.++. ...+..++++-.++...|.+.|+.++
T Consensus 92 ~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~~ 142 (158)
T d2htna1 92 ALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777766542 23445566666666666666665553
No 4
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}
Probab=17.96 E-value=1.7e+02 Score=21.89 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Q 016313 312 IDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNT 374 (391)
Q Consensus 312 IsrLV~RL~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~t 374 (391)
+..+++-...-++.++..++.|-+.++ . .. ..-+.+.+.++|+|+..--.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~a~~~~D-~-~t----------~~ll~~~~~~~ek~~W~l~s~ 140 (142)
T d1ji5a_ 90 VEAIMKDYEMMLVELKKGMEIAQNSDD-E-MT----------SDLLLGIYTELEKHAWMLRAF 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-H-HH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-H-HH----------HHHHHHHHHHHHHHHHHHHcc
Confidence 566666677778888888888877654 1 12 334566677888887764433
No 5
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.93 E-value=1.6e+02 Score=20.72 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhh--CCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 312 IDRLVARLYTAVEGDKQLVRFGLER--GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 312 IsrLV~RL~deIE~~~~~v~fale~--~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
|+.-..+|..+++.+...++--... |+....-..+..+.......+.+.|.++.+.+.-.
T Consensus 17 i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~~i~~~l~~~ 78 (94)
T d1wa8b1 17 IQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEA 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555443322 44455666889999999999999999999988654
No 6
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=16.23 E-value=2.5e+02 Score=22.41 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=19.4
Q ss_pred hcccccHHHHHHHHHHHhhhhHHHHHHHHhhC
Q 016313 306 NNDLDTIDRLVARLYTAVEGDKQLVRFGLERG 337 (391)
Q Consensus 306 ~~DLDTIsrLV~RL~deIE~~~~~v~fale~~ 337 (391)
.++|+.++.-|-|+-+-++.+...+--|+..+
T Consensus 5 ~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~ 36 (225)
T d1sumb_ 5 NEKVEEFKKGVLKAGWFIEKMFRNSISSLVER 36 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566666666666666666666555555544
No 7
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.41 E-value=1.6e+02 Score=19.66 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhCCC-cchH---HHHHHHHHHhhhhHHHhHHHHHHHHH
Q 016313 312 IDRLVARLYTAVEGDKQLVRFGLERGRD-KHSI---QEVVKQLRRNQQNFTDQLKDLEEHIC 369 (391)
Q Consensus 312 IsrLV~RL~deIE~~~~~v~fale~~~~-~~~v---kevv~eLkk~~~~f~~qLeELEEhv~ 369 (391)
|+..+.||.-+++.....+.-.-..-.+ .+.- ..||.+-+.+...+..+++.|++.+.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766666444322111 1111 26889999999999999999998764
No 8
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.85 E-value=1.8e+02 Score=20.02 Aligned_cols=66 Identities=11% Similarity=0.211 Sum_probs=38.7
Q ss_pred hcccccHHHHHH---HHHHHhhhhHHHHHHHHhhCC---------CcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 016313 306 NNDLDTIDRLVA---RLYTAVEGDKQLVRFGLERGR---------DKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLC 371 (391)
Q Consensus 306 ~~DLDTIsrLV~---RL~deIE~~~~~v~fale~~~---------~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lC 371 (391)
..|++.+..+.. .|..+|+.....++-.++.+. +...|+.-+..|.+.-..+.+..++=.++...|
T Consensus 28 ~~d~~~~~~~l~~h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L~~~~~~R~~~Le~a 105 (106)
T d1s35a1 28 PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC 105 (106)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888887 477777776666655444322 123455556666666666665555554444433
No 9
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.95 E-value=2e+02 Score=20.00 Aligned_cols=75 Identities=9% Similarity=0.198 Sum_probs=42.3
Q ss_pred hhcccccHHHHHHH---HHHHhhhhHHHHHHHHhhCCCcchHH---HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q 016313 305 LNNDLDTIDRLVAR---LYTAVEGDKQLVRFGLERGRDKHSIQ---EVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRA 378 (391)
Q Consensus 305 l~~DLDTIsrLV~R---L~deIE~~~~~v~fale~~~~~~~vk---evv~eLkk~~~~f~~qLeELEEhv~lCf~tInrA 378 (391)
...|++++..+..+ +..+|+.....++...+.+.. .+. ....+|+.....+.+.-++|.+-+...-..++.|
T Consensus 30 ~g~d~~~~~~~~~~h~~~~~ei~~~~~~i~~l~~~~~~--L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L~ea 107 (110)
T d1u5pa1 30 YGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADS--LMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNES 107 (110)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888887765 334455555555444333221 000 1124456666677777777777776666666666
Q ss_pred HHH
Q 016313 379 RSL 381 (391)
Q Consensus 379 R~l 381 (391)
+.+
T Consensus 108 ~~L 110 (110)
T d1u5pa1 108 HRL 110 (110)
T ss_dssp HHH
T ss_pred cCC
Confidence 643
No 10
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=13.55 E-value=2e+02 Score=21.91 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHhhhhHHHHHHHHhhCCC--cchHHHHHHHHHHhhhhHHHhHHHHHH
Q 016313 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRD--KHSIQEVVKQLRRNQQNFTDQLKDLEE 366 (391)
Q Consensus 310 DTIsrLV~RL~deIE~~~~~v~fale~~~~--~~~vkevv~eLkk~~~~f~~qLeELEE 366 (391)
+-+...++.-+..++..+..++.|-+.++. ...++.++++-.++...|.++|+-++.
T Consensus 85 e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l~~i~~ 143 (160)
T d1jgca_ 85 ETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYDR 143 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!