BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016314
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 569 bits (1467), Expect = e-163, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 16 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 75
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 76 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 135
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 136 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 195
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 196 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 255
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 256 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 315
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 316 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 375
Query: 391 E 391
E
Sbjct: 376 E 376
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 188/343 (54%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGAR
Sbjct: 25 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 84
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 85 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 144
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++V+ ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 145 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKIH---WW------ENV 191
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T V+D+
Sbjct: 192 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPF 243
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 244 CLQVKRNDYVH--ALVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 295
Query: 342 RVSEGDDLNVSFSMTRSKENHRLL----EVEFS---CEIREST 377
V G+++ + M + +N+R L +++F CE+ ST
Sbjct: 296 TVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 338
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGAR
Sbjct: 22 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 81
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 82 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 141
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++V+ ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 142 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKIH---WW------ENV 188
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T V+D+
Sbjct: 189 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPF 240
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 241 CLQVKRNDYVH--ALVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 292
Query: 342 RVSEGDDLNVSFSMTRSKENHR----LLEVEFS---CEIREST 377
V G+++ + M + +N+R ++++F CE+ ST
Sbjct: 293 TVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 335
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 188/335 (56%), Gaps = 23/335 (6%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E D Y C Y+ + +EM++DRVR DAY I +N +GKTVLDVG G+GIL+I+
Sbjct: 42 RERDQLYYEC-YSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIF 100
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
AQAGAR+VYAVEA+ + AR +V+ N L+D V V+ G VE + LPE+VD I+SEWMGY
Sbjct: 101 CAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW-YSF 214
LL ESM SV+ AR +WLK G++ P+ A +++ PI DQ + +W F
Sbjct: 161 GLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPI----SDQ--------MLEWRLGF 208
Query: 215 LKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDD 274
+ K +YGVDMS L + F+ + + + L + V+ ++ S A ++
Sbjct: 209 WSQVKQHYGVDMSCL-EGFATRCLMGHSEIVV-QGLSGEDVLARPQRFAQLELSRAGLEQ 266
Query: 275 IRE--VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQ 332
E V +F S G + GF+ WF V F G +++ + L+T+P + THW Q
Sbjct: 267 ELEAGVGGRFRCSCYGSAP-MHGFAIWFQVTFPGGE---SEKPLVLSTSP-FHPATHWKQ 321
Query: 333 QVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEV 367
+ V+V + D++ ++ S++N R L V
Sbjct: 322 ALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRV 356
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 188/343 (54%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGAR
Sbjct: 35 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 94
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L +S
Sbjct: 95 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQS 154
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++V+ ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 155 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKI---HWW------ENV 201
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T V+D+
Sbjct: 202 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPF 253
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 254 CLQVKRNDYVH--ALVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 305
Query: 342 RVSEGDDLNVSFSMTRSKENHR----LLEVEFS---CEIREST 377
V G+++ + M + +N+R ++++F CE+ ST
Sbjct: 306 TVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 348
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +E+L D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGAR
Sbjct: 31 YFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 90
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 91 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 150
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++V+ ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 151 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKIH---WW------ENV 197
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T V+D+
Sbjct: 198 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPF 249
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 250 CLQVKRNDYVH--ALVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 301
Query: 342 RVSEGDDLNVSFSMTRSKENHRLL----EVEFS---CEIREST 377
V G+++ + M + +N+R L +++F CE+ ST
Sbjct: 302 TVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 344
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 180/330 (54%), Gaps = 31/330 (9%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y +EML D++R ++Y + I+QN H F+ K VLDVG G+GIL++++A+AGA+
Sbjct: 29 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV V+ +++ A +++ N L+D + +I+G +E++ LP EKVDVIISEWMGYFLL ES
Sbjct: 89 KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 148
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M DSV+ A++++L G +YP + + + K D DD Y F
Sbjct: 149 MLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDV---NKHADRIAFWDDVYGF------- 198
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
MS + KK + ++ L P +I +K+IDC T ++ D+ E S
Sbjct: 199 ---KMSCM--------KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSD 246
Query: 282 FLSSIRGEGTRLC-GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPS 340
F +++ T +C +G+FD++F E + +T P + THW Q VFL
Sbjct: 247 F--TLKITRTSMCTAIAGYFDIYF----EKNCHNRVVFSTGPQS-TKTHWKQTVFLLEKP 299
Query: 341 VRVSEGDDLNVSFSMTRSKENHRLLEVEFS 370
V G+ L ++ ++K++ R L V +
Sbjct: 300 FSVKAGEALKGKVTVHKNKKDPRSLTVTLT 329
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 180/330 (54%), Gaps = 31/330 (9%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y +EML D+VR ++Y + I+QN H F+ K VLDVG G+GIL++++A+AGA+
Sbjct: 10 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 69
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV AV+ +++ A +++ N L+D + +I+G +E++ LP EKVDVIISEWMGYFLL ES
Sbjct: 70 KVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFES 129
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M DSV+ A+ ++L G +YP + + + K D DD Y F
Sbjct: 130 MLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDV---SKHADRIAFWDDVYGF------- 179
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
+MS + KK + ++ + +I +K+IDC T ++ D+ E S
Sbjct: 180 ---NMSCM--------KKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTTSISDL-EFSSD 227
Query: 282 FLSSIRGEGTRLC-GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPS 340
F ++R T +C +G+FD++F E + +T P + THW Q +FL
Sbjct: 228 F--TLRTTKTAMCTAVAGYFDIYF----EKNCHNRVVFSTGPQS-TKTHWKQTIFLLEKP 280
Query: 341 VRVSEGDDLNVSFSMTRSKENHRLLEVEFS 370
V G+ L ++ ++K++ R L V +
Sbjct: 281 FPVKAGEALKGKITVHKNKKDPRSLIVTLT 310
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 21/354 (5%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E YF Y +L Q+ M+ D VR Y +I QN F+ K VLDVG GSGIL+ +
Sbjct: 8 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 67
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
+AQAGARK+YAVEA+ M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY
Sbjct: 68 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
L E M +S + A+ ++LKP+G M+P+ + +AP +Q + + WY
Sbjct: 128 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-- 181
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+++GVD+S L +E Y+ Q + + +++ +V ++ A D+
Sbjct: 182 ---PSFHGVDLSALRGAAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDL 233
Query: 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVF 335
+ F + G + G + WFDV F GS + L+TAP T THW Q
Sbjct: 234 HRIEIPFKFHMLHSGL-VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRC 286
Query: 336 LFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389
LF+ + GD L+ + + +K + + + S L +KN F+
Sbjct: 287 LFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 340
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 21/354 (5%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E YF Y +L Q+ M+ D VR Y +I QN F+ K VLDVG GSGIL+ +
Sbjct: 4 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 63
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
+AQAGARK+YAVEA+ M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY
Sbjct: 64 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 123
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
L E M +S + A+ ++LKP+G M+P+ + +AP +Q + + WY
Sbjct: 124 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-- 177
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+++GVD+S L +E Y+ Q + + +++ +V ++ A D+
Sbjct: 178 ---PSFHGVDLSALRGAAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDL 229
Query: 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVF 335
+ F + G + G + WFDV F GS + L+TAP T THW Q
Sbjct: 230 HRIEIPFKFHMLHSGL-VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRC 282
Query: 336 LFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389
LF+ + GD L+ + + +K + + + S L +KN F+
Sbjct: 283 LFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 336
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 21/354 (5%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E YF Y +L Q+ M+ D VR Y +I QN F+ K VLDVG GSGIL+ +
Sbjct: 3 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 62
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
+AQAGARK+YAVEA+ M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY
Sbjct: 63 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 122
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
L E M +S + A+ ++LKP+G M+P+ + +AP +Q + + WY
Sbjct: 123 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-- 176
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+++GVD+S L +E Y+ Q + + +++ +V ++ A D+
Sbjct: 177 ---PSFHGVDLSALRGAAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDL 228
Query: 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVF 335
+ F + G + G + WFDV F GS + L+TAP T THW Q
Sbjct: 229 HRIEIPFKFHMLHSGL-VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRC 281
Query: 336 LFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389
LF+ + GD L+ + + +K + + + S L +KN F+
Sbjct: 282 LFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 335
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 183/348 (52%), Gaps = 21/348 (6%)
Query: 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA 101
YF Y +L Q+ M+ D VR Y +I QN F+ K VLDVG GSGIL+ ++AQAGA
Sbjct: 5 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA 64
Query: 102 RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRES 161
RK+YAVEA+ M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E
Sbjct: 65 RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER 124
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M +S + A+ ++LKP+G M+P+ + +AP +Q + + WY ++
Sbjct: 125 MLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSF 175
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
+GVD+S L +E Y+ Q + + +++ +V ++ A D+ +
Sbjct: 176 HGVDLSALRGAAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIP 230
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
F + G + G + WFDV F GS + L+TAP T THW Q LF+ +
Sbjct: 231 FKFHMLHSGL-VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPL 283
Query: 342 RVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389
GD L+ + + +K + + + S L +KN F+
Sbjct: 284 FAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 331
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 21/354 (5%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E YF Y +L Q+ M+ D VR Y +I QN F+ K VLDVG GSGIL+ +
Sbjct: 116 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 175
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
+AQAGARK+YAVEA+ M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY
Sbjct: 176 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 235
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
L E M +S + A+ ++LKP+G M+P+ + +AP +Q + + WY
Sbjct: 236 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-- 289
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+++GVD+S L +E Y+ Q + + +++ +V ++ A D+
Sbjct: 290 ---PSFHGVDLSALRGAAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDL 341
Query: 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVF 335
+ F + G + G + WFDV F GS + L+TAP T THW Q
Sbjct: 342 HRIEIPFKFHMLHSGL-VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRC 394
Query: 336 LFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389
LF+ + GD L+ + + +K + + + S L +KN F+
Sbjct: 395 LFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 448
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 178/338 (52%), Gaps = 31/338 (9%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y +EML D VR +Y N+I QNK F+ K VLDVG G+GIL++++A+ GA+
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
V V+ + + + A+ LV+ N D + ++ G +ED+ LP KVD+IISEWMGYFLL ES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M D+V+ ARD +L G+++P + +A GL D + +D + L+ W +
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLA----GLEDSQYKDEK--LNYW-------QDV 169
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG D S PF L + + + V T+ + D +T + D+ +S
Sbjct: 170 YGFDYS----PFV----PLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSN 220
Query: 282 F-LSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPS 340
F L++ R + + G WFD+ F ++ +E +T P THW Q +F F
Sbjct: 221 FKLTAKRQD--MINGIVTWFDIVFPAPK---GKRPVEFSTGPHA-PYTHWKQTIFYFPDD 274
Query: 341 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTG 378
+ GD + + +++N+R L ++ S + ES G
Sbjct: 275 LDAETGDTIEGELVCSPNEKNNRDLNIKISYKF-ESNG 311
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSV 136
F KTVLD+G G G I++A+ GA+KV ++ +S+ T K VV + ++
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID---LSERMLTEAKRKTTSPVVCYEQKAI 99
Query: 137 EDIVL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195
EDI + P+ +V++S +++ + FD + LK +G S P+ +
Sbjct: 100 EDIAIEPDAYNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEH----PVFTA 152
Query: 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDM----SVLTKPF-SEEQKKY------YLQT 244
G Q DWY+ K ++ VD S+ T F E+ +KY Y+QT
Sbjct: 153 DGRQ----------DWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQT 202
Query: 245 SLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEG 290
L + + VI + D D+ R +S+ + EG
Sbjct: 203 LLKNGFQINSVIEPEPAPELKDLPEMQ-DEYRRPMMLLISATKQEG 247
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 80 KTVLDVGTGSGILAIWSAQAGAR-----KVYAVEATKMSDHARTLVKANNLQ-----DVV 129
+ ++ +G G G L S +A + K+YAVE + +V N Q V
Sbjct: 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVE-----KNPNAVVTLENWQFEEWGSQV 413
Query: 130 EVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189
V+ + + V PEK D+I+SE +G F E + + +LK GV P ++
Sbjct: 414 TVVSSDMREWVAPEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDDGVSIPGEYTSFL 472
Query: 190 APIRSG 195
API S
Sbjct: 473 APISSS 478
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 85 VGTGSGILAIWSAQAGAR-----KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI 139
+G G G L S +A + KVYAVE + + V V+ G +
Sbjct: 384 LGAGRGPLVNASLRAAKQAERKIKVYAVEKNPNAVITLEGWRYEEWGSQVTVVSGDXREW 443
Query: 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194
PEK D+I+SE +G F E + + +LK GV P ++API S
Sbjct: 444 KAPEKADIIVSELLGSFGDNE-LSPECLDGAQHFLKDDGVSIPGEYTSYLAPISS 497
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121
+DA + F +GK ++D+ +G+GI+ + + K+ VE +++D A+ V
Sbjct: 35 IDAVLLAKFSYLPIRKGK-IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVA 93
Query: 122 ANNLQDVVEVIE---GSVEDIVLPEKVDVI 148
N L+D +E+IE + D++ E+ D++
Sbjct: 94 YNQLEDQIEIIEYDLKKITDLIPKERADIV 123
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN 123
TV DVGTGSGILAI + + GA+ V AT +SD + T + N
Sbjct: 63 TVADVGTGSGILAIAAHKLGAKSVL---ATDISDESMTAAEEN 102
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN----NLQDV 128
N+ T +D+G+G G L+I A+ + +++ A S H + N NL D
Sbjct: 38 NRFGITAGTCIDIGSGPGALSIALAK---QSDFSIRALDFSKHXNEIALKNIADANLNDR 94
Query: 129 VEVIEGSVEDIVLPEK-VDVIISEWMGYF 156
+++++G V +I + + D+I+S +F
Sbjct: 95 IQIVQGDVHNIPIEDNYADLIVSRGSVFF 123
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 78 QGKTVLDVGTGSGI-LAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134
+G TVLDVGTG+G L S G + KVYA++ +M ++A V L++ VEV++
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKS 95
Query: 135 SVEDIVLPEK-VDVI 148
I LP+ VD I
Sbjct: 96 EENKIPLPDNTVDFI 110
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 279 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--THWGQQVFL 336
RS + + L GF+G+FD+ + + L+ PST+ W V
Sbjct: 628 RSDSIEFVXDRNADLXGFAGYFDLQL--------YKTVXLSIEPSTHTPGXVSWFPAVIP 679
Query: 337 FRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ-ILPPIKN 386
R +RV EGD +S + R +N + E+ E +++ G+ + PI+N
Sbjct: 680 LRDQLRVGEGD--RISLKIDRKVDNTGVW-YEWHVEKKKTNGESVSTPIQN 727
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 279 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--THWGQQVFL 336
RS + + L GF+G+FD+ + + L+ PST+ W V
Sbjct: 628 RSDSIEFVMDRNADLMGFAGYFDLQL--------YKTVMLSIEPSTHTPGMVSWFPAVIP 679
Query: 337 FRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ-ILPPIKN 386
R +RV EGD +S + R +N + E+ E +++ G+ + PI+N
Sbjct: 680 LRDQLRVGEGD--RISLKIDRKVDNTGVW-YEWHVEKKKTNGESVSTPIQN 727
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVI 132
+H G VLD+GTGSG+LAI + + G K V+ M A K N ++ +
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 133 EGSVEDIVLPEKVDVIIS 150
EGS+E + D++++
Sbjct: 173 EGSLEAALPFGPFDLLVA 190
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVE 108
AYF N + G++V+D GTG+GILA S GA V A +
Sbjct: 38 AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD 81
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVI 132
+H G VLD+GTGSG+LAI + + G K V+ M A K N ++ +
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 133 EGSVEDIVLPEKVDVIIS 150
EGS+E + D++++
Sbjct: 173 EGSLEAALPFGPFDLLVA 190
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 76 HFQG-KTVLDVGTGSGILAIWSAQ---AGARKVYAVEATKMSDHARTLVKANNLQDVVEV 131
QG + +L++GT G IW A+ +G R V + K +D AR+ ++ NL D VEV
Sbjct: 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV 114
Query: 132 IEG 134
G
Sbjct: 115 RTG 117
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 59 DRVRMDAYF-NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+RV+ + F IF+ + + VLD+ G+GI + A+ G V +M AR
Sbjct: 21 ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR 80
Query: 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT 177
K NL+ +E ++G V +I + D + + E + LKP
Sbjct: 81 RKAKERNLK--IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG 138
Query: 178 GVM 180
GV
Sbjct: 139 GVF 141
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVE 137
Q VLD G G G AI A+ G + + + + D A+ +A + D + I + +
Sbjct: 68 QKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQ 127
Query: 138 DIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRW--LKPTGVM 180
D+ L VD+I+ + + E + D + W L+P GV+
Sbjct: 128 DVASHLETPVDLIL-----FHAVLEWVADPRSVLQTLWSVLRPGGVL 169
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVE 137
Q VLD G G G AI A+ G + + + + D A+ +A + D + I + +
Sbjct: 68 QKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQ 127
Query: 138 DIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRW--LKPTGVM 180
D+ L VD+I+ + + E + D + W L+P GV+
Sbjct: 128 DVASHLETPVDLIL-----FHAVLEWVADPRSVLQTLWSVLRPGGVL 169
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+DRVR ++ FN I + G VLD+ GSG L + + GA V VE SD
Sbjct: 26 TDRVR-ESLFN-IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVE----SDQRS 79
Query: 118 TLVKANNLQ 126
V A N++
Sbjct: 80 AAVIARNIE 88
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK 111
+GK V D+G G+G+L+ + GA++V VE K
Sbjct: 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK 82
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYN 326
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P Y+
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYS 88
>pdb|1QO0|D Chain D, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir.
pdb|1QO0|E Chain E, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Positive Regulator
Amir
Length = 196
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL 92
V +D F SIFQN+HH + +L GT L
Sbjct: 51 VPVDVVFTSIFQNRHHDEIAALLAAGTPRTTL 82
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
SD+VR A FN I +F G VLD+ GSG LAI + G VE + A+
Sbjct: 15 SDKVR-GAIFNXI---GPYFNGGRVLDLFAGSGGLAIEAVSRGXSAAVLVEKNR---KAQ 67
Query: 118 TLVKAN 123
+++ N
Sbjct: 68 AIIQDN 73
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK 111
HF G+T+L+ GT L +W G+ K ++A+K
Sbjct: 266 HFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASK 301
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135
G VLDV T +G AI +A AGA +V ++ + + + A+ K N ++D + I GS
Sbjct: 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRXKFIVGS 275
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA 122
M AY + ++ H +G LDVG+GSGIL AR V DH + LV
Sbjct: 63 MHAYALELLFDQLH-EGAKALDVGSGSGIL----TACFARMVGCTGKVIGIDHIKELV-- 115
Query: 123 NNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVM- 180
D V + ++ +V +++ + MGY E+ +D++ + P ++
Sbjct: 116 ---DDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA--EEAPYDAIHVGAAAPVVPQALID 170
Query: 181 -YPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKK 239
R+ + P+ G+Q + Y+ L D +K M V+ P ++++K+
Sbjct: 171 QLKPGGRL-ILPVGPAGGNQMLEQYD-KLQDGSIKMKPL-------MGVIYVPLTDKEKQ 221
Query: 240 Y 240
+
Sbjct: 222 W 222
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 84
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVE 108
GKTV ++G G+G+++I + AGA +V A +
Sbjct: 80 GKTVCELGAGAGLVSIVAFLAGADQVVATD 109
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 35 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 86
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 84
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 45 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 96
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 18 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 69
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 18 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 69
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 59 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 110
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 10 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 61
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 36 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 87
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 25 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 76
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 269 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 322
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQD 127
N+I + +G + D+G G+G ++ A G VYAVE + + +
Sbjct: 24 NAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF-VYAVEPSIVXRQQAV------VHP 76
Query: 128 VVEVIEGSVEDIVLPEK-VDVIIS 150
VE G E++ LP+K VD +IS
Sbjct: 77 QVEWFTGYAENLALPDKSVDGVIS 100
>pdb|2QS8|A Chain A, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
pdb|2QS8|B Chain B, Crystal Structure Of A Xaa-Pro Dipeptidase With Bound
Methionine In The Active Site
Length = 418
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 55 EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDV---GTGSGILAIWSAQAGARK-------- 103
E ++++ ++D +F I + K G + D G+ + AG +K
Sbjct: 282 EFVAEKSKIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQKHGTNWKEF 341
Query: 104 VYAVE---------ATKMSDHARTL--------VKANNLQDVVEVIEGSVEDIVLPEKVD 146
VY VE + + A+ L +++ L D++ V +EDI + E VD
Sbjct: 342 VYXVENGXPAXKAIQSATXETAKLLRIEDKLGSIESGKLADLIAVKGNPIEDISVLENVD 401
Query: 147 VIISEWMGY 155
V+I + + Y
Sbjct: 402 VVIKDGLLY 410
>pdb|3OPN|A Chain A, The Crystal Structure Of A Putative Hemolysin From
Lactococcus Lactis
Length = 232
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVE 108
GKT LD+G+ +G Q GA+ VYA++
Sbjct: 35 EINGKTCLDIGSSTGGFTDVXLQNGAKLVYALD 67
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 50 LYHQKEMLSDRVRMDAYF-NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVE 108
++ K+ L +D F N ++ + + VL++G G GIL A+ A+KVY +E
Sbjct: 21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIE 79
Query: 109 ATK-MSDHARTLVKANNLQDVVEVIEG 134
K + +A L L + +E+I G
Sbjct: 80 IDKSLEPYANKL---KELYNNIEIIWG 103
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
VL++G G GIL A+ A+KVY +E K + +A L L + +E+I G
Sbjct: 26 VVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL---KELYNNIEIIWG 76
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
VL++G G GIL A+ A+KVY +E K + +A L L + +E+I G
Sbjct: 24 VVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL---KELYNNIEIIWG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,727,770
Number of Sequences: 62578
Number of extensions: 486614
Number of successful extensions: 1300
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 64
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)