Query 016314
Match_columns 391
No_of_seqs 406 out of 3350
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 2.8E-62 6.1E-67 449.0 28.4 325 37-389 19-344 (346)
2 KOG1500 Protein arginine N-met 100.0 5.2E-51 1.1E-55 367.2 20.7 318 35-375 134-451 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 2E-44 4.4E-49 352.9 23.3 274 55-375 155-448 (448)
4 KOG0822 Protein kinase inhibit 100.0 9.4E-32 2E-36 255.8 18.8 288 55-390 337-647 (649)
5 PTZ00357 methyltransferase; Pr 99.9 9.8E-26 2.1E-30 220.2 22.2 296 56-377 645-1040(1072)
6 KOG1501 Arginine N-methyltrans 99.9 7.6E-23 1.6E-27 191.0 17.4 290 54-377 36-354 (636)
7 COG2226 UbiE Methylase involve 99.8 2.3E-18 5.1E-23 154.4 13.9 142 38-183 11-155 (238)
8 PF01209 Ubie_methyltran: ubiE 99.7 9.7E-18 2.1E-22 151.9 9.8 144 36-183 5-152 (233)
9 PF12847 Methyltransf_18: Meth 99.7 7.4E-17 1.6E-21 129.7 12.1 107 78-184 1-111 (112)
10 PLN02233 ubiquinone biosynthes 99.7 7.3E-16 1.6E-20 142.6 14.7 148 35-185 30-183 (261)
11 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.3E-16 9.3E-21 137.5 8.8 106 77-188 58-165 (243)
12 PLN02396 hexaprenyldihydroxybe 99.6 5.7E-15 1.2E-19 139.6 15.8 105 77-185 130-236 (322)
13 TIGR02752 MenG_heptapren 2-hep 99.6 8.5E-15 1.8E-19 133.3 15.1 140 40-183 7-150 (231)
14 PF03848 TehB: Tellurite resis 99.6 5.9E-15 1.3E-19 128.4 12.3 110 70-183 22-132 (192)
15 PRK11207 tellurite resistance 99.6 7E-15 1.5E-19 130.5 12.6 107 73-182 25-132 (197)
16 TIGR00138 gidB 16S rRNA methyl 99.6 1.3E-14 2.9E-19 126.6 13.0 101 76-184 40-142 (181)
17 TIGR00477 tehB tellurite resis 99.6 5.9E-15 1.3E-19 130.7 10.5 109 70-182 22-131 (195)
18 PF13847 Methyltransf_31: Meth 99.6 2.2E-14 4.7E-19 122.0 12.3 105 78-186 3-112 (152)
19 PRK00107 gidB 16S rRNA methylt 99.6 4.1E-14 9E-19 123.8 13.4 100 78-185 45-146 (187)
20 PLN02244 tocopherol O-methyltr 99.6 5.9E-14 1.3E-18 134.8 15.7 104 77-184 117-223 (340)
21 KOG1540 Ubiquinone biosynthesi 99.6 1E-13 2.2E-18 122.4 15.6 135 41-181 63-211 (296)
22 PF06325 PrmA: Ribosomal prote 99.6 2.3E-14 5.1E-19 133.3 11.5 109 64-183 149-258 (295)
23 PF05175 MTS: Methyltransferas 99.6 2.3E-14 5E-19 124.1 10.7 104 78-182 31-138 (170)
24 PF08241 Methyltransf_11: Meth 99.6 3E-14 6.5E-19 110.4 10.0 93 83-182 1-95 (95)
25 COG2264 PrmA Ribosomal protein 99.5 2.9E-14 6.3E-19 131.4 11.3 109 68-184 154-263 (300)
26 PF02353 CMAS: Mycolic acid cy 99.5 7.4E-14 1.6E-18 129.4 13.8 115 69-187 53-169 (273)
27 PRK11036 putative S-adenosyl-L 99.5 5.3E-14 1.2E-18 130.0 12.7 103 77-183 43-148 (255)
28 PRK15068 tRNA mo(5)U34 methylt 99.5 1E-13 2.2E-18 131.9 13.9 112 69-183 113-225 (322)
29 KOG1270 Methyltransferases [Co 99.5 2E-14 4.3E-19 127.7 7.8 121 59-185 63-196 (282)
30 TIGR00452 methyltransferase, p 99.5 1.7E-13 3.7E-18 129.1 13.7 114 68-184 111-225 (314)
31 COG4076 Predicted RNA methylas 99.5 2E-14 4.3E-19 120.9 6.4 136 52-195 10-146 (252)
32 COG4123 Predicted O-methyltran 99.5 7.5E-14 1.6E-18 125.4 10.3 108 77-185 43-171 (248)
33 COG2230 Cfa Cyclopropane fatty 99.5 1.5E-13 3.3E-18 125.7 12.3 116 68-187 62-179 (283)
34 PRK00216 ubiE ubiquinone/menaq 99.5 3.1E-13 6.7E-18 123.4 13.9 144 36-183 9-157 (239)
35 PRK12335 tellurite resistance 99.5 1.6E-13 3.4E-18 129.0 11.9 102 77-182 119-221 (287)
36 PRK10258 biotin biosynthesis p 99.5 5.2E-13 1.1E-17 123.2 12.1 107 67-183 31-139 (251)
37 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.7E-13 8E-18 123.8 10.9 106 77-184 55-164 (247)
38 PF13659 Methyltransf_26: Meth 99.5 3.3E-13 7.2E-18 109.2 9.3 104 79-183 1-114 (117)
39 PF05401 NodS: Nodulation prot 99.5 4.4E-13 9.5E-18 115.4 10.1 108 73-184 38-146 (201)
40 TIGR02469 CbiT precorrin-6Y C5 99.4 2.4E-12 5.3E-17 105.0 13.7 108 71-185 12-123 (124)
41 TIGR00406 prmA ribosomal prote 99.4 1.4E-12 3E-17 122.5 13.6 100 77-183 158-258 (288)
42 PRK15001 SAM-dependent 23S rib 99.4 1.2E-12 2.7E-17 126.0 13.3 114 70-183 220-339 (378)
43 PF13649 Methyltransf_25: Meth 99.4 3.3E-13 7.1E-18 106.5 7.3 93 82-178 1-101 (101)
44 PRK14103 trans-aconitate 2-met 99.4 8.5E-13 1.8E-17 122.0 11.3 103 70-183 21-125 (255)
45 PRK14967 putative methyltransf 99.4 2.1E-12 4.6E-17 116.9 13.5 105 76-183 34-158 (223)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2.3E-12 5E-17 116.3 13.6 136 42-183 3-142 (223)
47 TIGR00537 hemK_rel_arch HemK-r 99.4 1.5E-12 3.2E-17 113.8 11.9 105 76-184 17-140 (179)
48 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.3E-12 2.8E-17 124.2 12.2 132 43-183 79-214 (340)
49 TIGR00740 methyltransferase, p 99.4 1.3E-12 2.8E-17 119.6 12.0 107 77-185 52-162 (239)
50 PRK05785 hypothetical protein; 99.4 1E-12 2.2E-17 119.0 11.1 127 40-178 11-141 (226)
51 PTZ00098 phosphoethanolamine N 99.4 1.3E-12 2.9E-17 121.0 11.8 112 70-185 44-157 (263)
52 TIGR03533 L3_gln_methyl protei 99.4 3E-12 6.6E-17 119.8 13.9 107 78-185 121-252 (284)
53 PRK13944 protein-L-isoaspartat 99.4 3.5E-12 7.7E-17 113.8 13.4 109 66-183 60-172 (205)
54 smart00828 PKS_MT Methyltransf 99.4 1.4E-12 3.1E-17 118.1 11.0 102 80-184 1-104 (224)
55 PRK08287 cobalt-precorrin-6Y C 99.4 5.9E-12 1.3E-16 110.8 14.2 106 70-183 23-130 (187)
56 PRK01683 trans-aconitate 2-met 99.4 2E-12 4.3E-17 119.8 11.5 106 69-183 22-129 (258)
57 PRK00377 cbiT cobalt-precorrin 99.4 5.1E-12 1.1E-16 112.3 13.4 107 71-183 33-144 (198)
58 PRK11873 arsM arsenite S-adeno 99.4 3.4E-12 7.4E-17 119.1 12.7 105 76-184 75-183 (272)
59 PRK00517 prmA ribosomal protei 99.4 3.8E-12 8.3E-17 117.2 12.5 94 77-183 118-212 (250)
60 TIGR00080 pimt protein-L-isoas 99.4 4.8E-12 1E-16 113.9 12.5 106 68-183 67-176 (215)
61 PRK11805 N5-glutamine S-adenos 99.4 5.8E-12 1.3E-16 119.0 13.4 105 80-185 135-264 (307)
62 KOG1271 Methyltransferases [Ge 99.4 1.7E-12 3.8E-17 108.9 8.2 109 81-189 70-186 (227)
63 PRK13942 protein-L-isoaspartat 99.4 7.6E-12 1.7E-16 112.2 12.5 106 68-183 66-175 (212)
64 TIGR00536 hemK_fam HemK family 99.4 9.5E-12 2E-16 116.7 13.5 124 63-187 98-247 (284)
65 PRK00121 trmB tRNA (guanine-N( 99.4 5.9E-12 1.3E-16 112.1 11.5 105 78-183 40-155 (202)
66 TIGR02021 BchM-ChlM magnesium 99.4 1.3E-11 2.7E-16 111.6 13.7 114 66-183 41-157 (219)
67 PLN02336 phosphoethanolamine N 99.4 7.4E-12 1.6E-16 126.1 13.3 107 74-185 262-370 (475)
68 PRK06922 hypothetical protein; 99.3 7.9E-12 1.7E-16 125.9 12.8 108 76-185 416-538 (677)
69 PF08003 Methyltransf_9: Prote 99.3 1E-11 2.3E-16 113.7 12.2 112 69-183 106-218 (315)
70 PRK09489 rsmC 16S ribosomal RN 99.3 1.1E-11 2.5E-16 118.5 12.7 110 71-183 189-302 (342)
71 PRK15128 23S rRNA m(5)C1962 me 99.3 9.4E-12 2E-16 121.2 11.5 112 77-189 219-344 (396)
72 KOG4300 Predicted methyltransf 99.3 7.9E-12 1.7E-16 107.1 9.3 100 80-183 78-181 (252)
73 PRK08317 hypothetical protein; 99.3 2.7E-11 5.8E-16 110.4 13.6 117 64-185 5-125 (241)
74 PF08242 Methyltransf_12: Meth 99.3 4.7E-13 1E-17 105.1 1.5 94 83-180 1-99 (99)
75 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.6E-11 5.7E-16 107.1 12.6 104 77-185 52-160 (199)
76 PF13489 Methyltransf_23: Meth 99.3 6.2E-12 1.3E-16 107.4 8.3 107 65-186 8-117 (161)
77 TIGR01177 conserved hypothetic 99.3 2E-11 4.3E-16 117.0 12.7 115 66-183 170-293 (329)
78 PRK14966 unknown domain/N5-glu 99.3 2.3E-11 5E-16 117.5 13.0 124 57-185 232-382 (423)
79 COG2242 CobL Precorrin-6B meth 99.3 4E-11 8.6E-16 102.5 12.9 114 65-186 21-137 (187)
80 TIGR01983 UbiG ubiquinone bios 99.3 4.4E-11 9.6E-16 108.3 14.1 135 43-184 12-149 (224)
81 COG2813 RsmC 16S RNA G1207 met 99.3 2.6E-11 5.6E-16 111.3 12.4 115 67-183 147-265 (300)
82 PRK05134 bifunctional 3-demeth 99.3 3.8E-11 8.3E-16 109.4 13.5 111 68-184 38-151 (233)
83 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.2E-11 2.7E-16 129.4 11.5 107 78-185 538-657 (702)
84 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.7E-11 5.8E-16 108.5 11.4 102 77-183 33-151 (213)
85 PRK11705 cyclopropane fatty ac 99.3 2.9E-11 6.2E-16 117.7 12.5 108 69-184 158-267 (383)
86 PRK14968 putative methyltransf 99.3 4.1E-11 9E-16 105.2 12.5 105 77-183 22-147 (188)
87 PRK04266 fibrillarin; Provisio 99.3 4.9E-11 1.1E-15 107.6 12.8 103 73-183 67-175 (226)
88 PRK01544 bifunctional N5-gluta 99.3 2.4E-11 5.3E-16 122.3 12.0 106 79-185 139-270 (506)
89 PRK07402 precorrin-6B methylas 99.3 8.9E-11 1.9E-15 104.1 14.0 110 68-185 30-143 (196)
90 PRK00312 pcm protein-L-isoaspa 99.3 6.3E-11 1.4E-15 106.4 13.2 105 68-183 68-174 (212)
91 COG2890 HemK Methylase of poly 99.3 4.9E-11 1.1E-15 111.1 12.5 122 61-186 94-240 (280)
92 TIGR02716 C20_methyl_CrtF C-20 99.3 7.2E-11 1.6E-15 112.1 13.4 116 68-185 139-255 (306)
93 PLN03075 nicotianamine synthas 99.3 9.5E-11 2.1E-15 108.6 13.8 106 78-185 123-234 (296)
94 PLN02336 phosphoethanolamine N 99.2 3.5E-11 7.5E-16 121.3 11.4 113 68-185 27-143 (475)
95 COG2263 Predicted RNA methylas 99.2 1.2E-10 2.7E-15 99.1 12.8 76 73-152 40-116 (198)
96 TIGR00091 tRNA (guanine-N(7)-) 99.2 4.7E-11 1E-15 105.7 10.8 106 78-184 16-132 (194)
97 PLN02585 magnesium protoporphy 99.2 2.3E-11 5E-16 114.9 9.2 100 77-181 143-247 (315)
98 PRK09328 N5-glutamine S-adenos 99.2 1E-10 2.2E-15 109.4 13.2 121 61-183 91-237 (275)
99 PLN02781 Probable caffeoyl-CoA 99.2 6.2E-11 1.3E-15 107.8 11.4 105 77-187 67-181 (234)
100 COG2519 GCD14 tRNA(1-methylade 99.2 1E-10 2.2E-15 104.4 12.3 109 69-185 85-196 (256)
101 TIGR00095 RNA methyltransferas 99.2 1.1E-10 2.3E-15 102.7 12.0 106 77-186 48-161 (189)
102 TIGR02072 BioC biotin biosynth 99.2 7.6E-11 1.6E-15 107.5 11.6 99 77-183 33-134 (240)
103 smart00138 MeTrc Methyltransfe 99.2 2.9E-11 6.3E-16 112.0 8.7 128 57-185 74-243 (264)
104 TIGR03704 PrmC_rel_meth putati 99.2 1.5E-10 3.3E-15 106.4 12.6 119 62-185 69-217 (251)
105 COG4106 Tam Trans-aconitate me 99.2 3.7E-11 8.1E-16 103.8 8.0 111 72-191 24-136 (257)
106 TIGR03534 RF_mod_PrmC protein- 99.2 2.1E-10 4.6E-15 105.6 13.5 117 64-183 74-216 (251)
107 PHA03412 putative methyltransf 99.2 1E-10 2.2E-15 104.4 10.1 103 78-186 49-165 (241)
108 PRK04457 spermidine synthase; 99.2 1.4E-10 3E-15 107.3 11.5 106 78-183 66-176 (262)
109 PRK14904 16S rRNA methyltransf 99.2 2.3E-10 4.9E-15 114.1 13.7 115 73-188 245-381 (445)
110 COG1092 Predicted SAM-dependen 99.2 1.1E-10 2.5E-15 112.3 10.9 113 77-189 216-341 (393)
111 PRK13255 thiopurine S-methyltr 99.2 1.5E-10 3.2E-15 104.0 11.0 100 77-181 36-152 (218)
112 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.9E-10 4.2E-15 106.7 12.0 113 75-188 68-203 (264)
113 COG2518 Pcm Protein-L-isoaspar 99.2 1.9E-10 4E-15 100.6 10.6 104 69-183 63-168 (209)
114 PF10672 Methyltrans_SAM: S-ad 99.2 2.2E-10 4.8E-15 106.2 11.7 111 77-187 122-241 (286)
115 PTZ00146 fibrillarin; Provisio 99.2 5.7E-10 1.2E-14 103.1 14.1 113 63-183 114-236 (293)
116 PRK07580 Mg-protoporphyrin IX 99.2 5.1E-10 1.1E-14 101.7 13.8 101 77-181 62-163 (230)
117 PRK06202 hypothetical protein; 99.2 2.4E-10 5.2E-15 104.1 11.5 105 66-175 48-159 (232)
118 PRK10901 16S rRNA methyltransf 99.2 2.9E-10 6.3E-15 112.7 13.0 115 73-189 239-377 (427)
119 PRK14902 16S rRNA methyltransf 99.2 2.8E-10 6.2E-15 113.4 12.8 115 73-188 245-383 (444)
120 TIGR03587 Pse_Me-ase pseudamin 99.2 2.4E-10 5.2E-15 101.7 11.0 96 77-182 42-140 (204)
121 PRK14903 16S rRNA methyltransf 99.2 3.2E-10 6.9E-15 112.2 12.9 114 74-188 233-370 (431)
122 PRK11188 rrmJ 23S rRNA methylt 99.2 3.1E-10 6.8E-15 101.5 11.6 97 76-183 49-164 (209)
123 PRK13943 protein-L-isoaspartat 99.2 5.4E-10 1.2E-14 105.8 13.5 104 69-182 71-178 (322)
124 PRK14901 16S rRNA methyltransf 99.1 3.6E-10 7.9E-15 112.2 12.8 114 74-188 248-388 (434)
125 PRK11088 rrmA 23S rRNA methylt 99.1 3.1E-10 6.8E-15 105.9 11.5 90 78-183 85-180 (272)
126 PRK14121 tRNA (guanine-N(7)-)- 99.1 4.7E-10 1E-14 107.8 12.9 107 76-183 120-234 (390)
127 PF03602 Cons_hypoth95: Conser 99.1 2E-10 4.3E-15 100.3 9.1 106 77-185 41-154 (183)
128 smart00650 rADc Ribosomal RNA 99.1 5.1E-10 1.1E-14 96.8 11.6 106 70-183 5-112 (169)
129 PRK03522 rumB 23S rRNA methylu 99.1 5.4E-10 1.2E-14 106.4 12.8 113 66-186 161-276 (315)
130 PRK00811 spermidine synthase; 99.1 5.1E-10 1.1E-14 104.8 12.0 108 78-185 76-192 (283)
131 TIGR03438 probable methyltrans 99.1 5.9E-10 1.3E-14 105.4 12.5 119 65-186 52-179 (301)
132 PF01135 PCMT: Protein-L-isoas 99.1 3.3E-10 7.2E-15 100.8 9.8 106 67-182 61-170 (209)
133 TIGR00563 rsmB ribosomal RNA s 99.1 7E-10 1.5E-14 110.0 12.9 117 73-189 233-373 (426)
134 COG0742 N6-adenine-specific me 99.1 1.2E-09 2.6E-14 94.0 12.6 121 67-187 30-157 (187)
135 COG4976 Predicted methyltransf 99.1 2.5E-11 5.5E-16 105.7 1.9 136 36-185 83-226 (287)
136 KOG2904 Predicted methyltransf 99.1 7.9E-10 1.7E-14 98.9 11.3 123 62-185 129-286 (328)
137 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.4E-09 3.1E-14 108.3 14.0 113 63-184 282-400 (443)
138 cd02440 AdoMet_MTases S-adenos 99.1 1.1E-09 2.3E-14 85.3 9.9 100 81-183 1-103 (107)
139 PLN02476 O-methyltransferase 99.1 1E-09 2.2E-14 101.3 11.0 105 77-187 117-231 (278)
140 PF01596 Methyltransf_3: O-met 99.1 6.8E-10 1.5E-14 98.5 9.3 107 77-189 44-160 (205)
141 PLN02672 methionine S-methyltr 99.1 1E-09 2.2E-14 117.5 11.8 136 57-193 96-287 (1082)
142 PHA03411 putative methyltransf 99.0 1E-09 2.2E-14 100.3 9.6 100 78-183 64-182 (279)
143 COG4122 Predicted O-methyltran 99.0 1.4E-09 2.9E-14 96.6 10.0 107 76-188 57-170 (219)
144 PF10294 Methyltransf_16: Puta 99.0 1E-09 2.2E-14 95.2 9.0 103 76-181 43-153 (173)
145 TIGR02085 meth_trns_rumB 23S r 99.0 2.1E-09 4.6E-14 104.6 12.2 111 66-184 221-334 (374)
146 PF08704 GCD14: tRNA methyltra 99.0 2.9E-09 6.3E-14 96.8 11.1 109 67-183 29-145 (247)
147 TIGR00479 rumA 23S rRNA (uraci 99.0 6.1E-09 1.3E-13 103.6 13.4 113 63-183 277-395 (431)
148 PLN02366 spermidine synthase 99.0 7.6E-09 1.6E-13 97.5 13.1 113 77-189 90-211 (308)
149 PF02475 Met_10: Met-10+ like- 99.0 3.8E-09 8.2E-14 93.1 10.4 110 62-180 87-198 (200)
150 KOG1541 Predicted protein carb 99.0 2.8E-09 6.1E-14 92.5 9.2 99 78-183 50-159 (270)
151 TIGR00417 speE spermidine synt 99.0 8.6E-09 1.9E-13 96.0 13.2 108 78-185 72-187 (270)
152 TIGR00438 rrmJ cell division p 99.0 3.5E-09 7.6E-14 93.2 9.6 97 76-183 30-145 (188)
153 KOG2899 Predicted methyltransf 98.9 4.8E-09 1E-13 92.4 9.6 108 76-185 56-210 (288)
154 PF03291 Pox_MCEL: mRNA cappin 98.9 8.3E-09 1.8E-13 98.1 11.9 106 78-183 62-185 (331)
155 PLN02589 caffeoyl-CoA O-methyl 98.9 5.5E-09 1.2E-13 95.2 9.5 107 77-189 78-195 (247)
156 PRK01581 speE spermidine synth 98.9 9E-09 1.9E-13 97.7 11.2 108 77-184 149-268 (374)
157 PRK03612 spermidine synthase; 98.9 6.5E-09 1.4E-13 105.4 10.8 110 77-186 296-417 (521)
158 PTZ00338 dimethyladenosine tra 98.9 1.2E-08 2.5E-13 95.8 11.1 84 68-153 26-110 (294)
159 KOG3010 Methyltransferase [Gen 98.9 1.9E-09 4.1E-14 95.1 5.3 98 80-182 35-135 (261)
160 TIGR02081 metW methionine bios 98.9 1.5E-08 3.2E-13 89.7 10.6 89 78-177 13-105 (194)
161 PRK14896 ksgA 16S ribosomal RN 98.9 1.7E-08 3.6E-13 93.4 10.6 83 66-153 17-100 (258)
162 COG1041 Predicted DNA modifica 98.8 1.9E-08 4.1E-13 94.3 10.7 118 65-185 184-311 (347)
163 KOG1501 Arginine N-methyltrans 98.8 9.7E-09 2.1E-13 97.3 8.7 221 103-361 391-625 (636)
164 PRK11727 23S rRNA mA1618 methy 98.8 3E-08 6.6E-13 93.6 11.8 80 78-158 114-202 (321)
165 KOG2361 Predicted methyltransf 98.8 8.4E-09 1.8E-13 91.0 7.1 106 81-189 74-188 (264)
166 PF01170 UPF0020: Putative RNA 98.8 3.7E-08 8E-13 85.9 11.2 120 63-183 13-150 (179)
167 PRK13256 thiopurine S-methyltr 98.8 2.8E-08 6.1E-13 89.1 10.6 105 77-183 42-162 (226)
168 PRK04338 N(2),N(2)-dimethylgua 98.8 1.9E-08 4.1E-13 97.7 10.2 97 79-183 58-157 (382)
169 PF05724 TPMT: Thiopurine S-me 98.8 1E-08 2.3E-13 92.0 7.3 115 65-182 25-153 (218)
170 PRK00274 ksgA 16S ribosomal RN 98.8 2.6E-08 5.7E-13 92.8 9.7 81 68-153 32-114 (272)
171 KOG1975 mRNA cap methyltransfe 98.8 2.3E-08 4.9E-13 91.6 8.3 109 76-184 115-237 (389)
172 TIGR00478 tly hemolysin TlyA f 98.8 2.8E-08 6.1E-13 89.5 8.6 50 66-115 63-113 (228)
173 PF07021 MetW: Methionine bios 98.8 2.9E-08 6.4E-13 85.6 8.1 88 77-175 12-103 (193)
174 COG2521 Predicted archaeal met 98.8 8E-09 1.7E-13 90.5 4.5 121 62-182 116-243 (287)
175 TIGR02143 trmA_only tRNA (urac 98.7 1.1E-07 2.5E-12 91.7 11.8 109 64-183 184-310 (353)
176 COG2520 Predicted methyltransf 98.7 8.7E-08 1.9E-12 90.6 10.3 99 77-182 187-287 (341)
177 PRK04148 hypothetical protein; 98.7 2E-07 4.3E-12 76.2 10.9 76 66-150 4-83 (134)
178 KOG3191 Predicted N6-DNA-methy 98.7 2.8E-07 6E-12 77.9 11.7 102 78-182 43-166 (209)
179 PRK05031 tRNA (uracil-5-)-meth 98.7 1.7E-07 3.7E-12 90.9 12.2 110 63-183 192-319 (362)
180 KOG0820 Ribosomal RNA adenine 98.7 1.2E-07 2.6E-12 85.1 9.9 86 65-152 45-131 (315)
181 PF01739 CheR: CheR methyltran 98.7 6.5E-08 1.4E-12 85.2 8.1 128 56-185 5-176 (196)
182 PF02390 Methyltransf_4: Putat 98.7 1.8E-07 3.8E-12 82.7 10.6 103 80-183 19-132 (195)
183 KOG3420 Predicted RNA methylas 98.7 5.5E-08 1.2E-12 79.0 6.5 82 69-152 39-122 (185)
184 COG2265 TrmA SAM-dependent met 98.7 1.8E-07 3.8E-12 92.1 11.5 119 59-185 274-397 (432)
185 PLN02823 spermine synthase 98.7 2.2E-07 4.7E-12 88.6 11.7 106 78-183 103-219 (336)
186 PF02527 GidB: rRNA small subu 98.7 4.9E-07 1.1E-11 78.8 12.7 99 81-187 51-151 (184)
187 PF05891 Methyltransf_PK: AdoM 98.7 5.5E-08 1.2E-12 85.5 6.8 105 79-185 56-162 (218)
188 COG3897 Predicted methyltransf 98.6 1E-07 2.2E-12 81.6 7.9 104 68-179 69-173 (218)
189 PF00891 Methyltransf_2: O-met 98.6 3.5E-07 7.5E-12 83.8 12.1 106 70-185 92-200 (241)
190 COG0421 SpeE Spermidine syntha 98.6 3.2E-07 6.9E-12 85.1 11.4 111 80-190 78-196 (282)
191 TIGR00755 ksgA dimethyladenosi 98.6 2.5E-07 5.3E-12 85.4 9.8 81 67-152 18-102 (253)
192 COG0116 Predicted N6-adenine-s 98.6 7E-07 1.5E-11 85.1 12.6 122 63-185 176-345 (381)
193 TIGR00308 TRM1 tRNA(guanine-26 98.6 3.8E-07 8.2E-12 88.3 11.0 97 79-183 45-146 (374)
194 PLN02232 ubiquinone biosynthes 98.6 1.5E-07 3.3E-12 80.5 7.1 78 105-185 1-82 (160)
195 PF06080 DUF938: Protein of un 98.6 3.1E-07 6.7E-12 80.4 9.0 104 81-185 28-142 (204)
196 COG0030 KsgA Dimethyladenosine 98.6 5.1E-07 1.1E-11 82.2 10.4 93 56-157 12-107 (259)
197 KOG2940 Predicted methyltransf 98.5 1.6E-07 3.5E-12 82.1 5.7 99 79-183 73-173 (325)
198 PRK11933 yebU rRNA (cytosine-C 98.5 1E-06 2.2E-11 87.7 12.1 114 75-189 110-247 (470)
199 COG0357 GidB Predicted S-adeno 98.5 8.8E-07 1.9E-11 78.6 10.1 135 40-182 24-166 (215)
200 PF09445 Methyltransf_15: RNA 98.5 2.7E-07 5.8E-12 78.3 6.5 72 80-152 1-77 (163)
201 PF05958 tRNA_U5-meth_tr: tRNA 98.5 7.6E-07 1.6E-11 86.0 10.5 93 62-157 181-291 (352)
202 COG1189 Predicted rRNA methyla 98.5 6.3E-07 1.4E-11 79.5 8.7 106 65-182 66-176 (245)
203 COG1352 CheR Methylase of chem 98.5 8.3E-07 1.8E-11 81.6 9.8 129 55-185 70-242 (268)
204 PF01564 Spermine_synth: Sperm 98.5 9.2E-07 2E-11 81.0 9.9 107 78-184 76-191 (246)
205 PF12147 Methyltransf_20: Puta 98.4 3.8E-06 8.3E-11 76.7 12.7 112 77-188 134-253 (311)
206 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.8E-06 4E-11 90.8 12.2 117 63-180 174-343 (702)
207 PF05219 DREV: DREV methyltran 98.4 7.3E-07 1.6E-11 80.3 7.6 94 78-185 94-189 (265)
208 PRK10611 chemotaxis methyltran 98.4 8.3E-07 1.8E-11 82.7 8.2 124 57-185 97-263 (287)
209 COG3963 Phospholipid N-methylt 98.4 1.7E-06 3.6E-11 72.3 8.9 111 65-183 35-155 (194)
210 KOG1663 O-methyltransferase [S 98.4 2.2E-06 4.8E-11 75.6 10.1 108 76-189 71-188 (237)
211 COG0220 Predicted S-adenosylme 98.4 3E-06 6.5E-11 76.2 10.5 103 80-183 50-163 (227)
212 PF05148 Methyltransf_8: Hypot 98.3 2.6E-06 5.6E-11 74.4 8.4 88 77-185 71-159 (219)
213 KOG1661 Protein-L-isoaspartate 98.3 2.2E-06 4.9E-11 74.2 7.8 97 76-181 80-190 (237)
214 PF04816 DUF633: Family of unk 98.3 5.8E-06 1.3E-10 73.4 10.0 95 82-181 1-98 (205)
215 PF03141 Methyltransf_29: Puta 98.3 8.2E-07 1.8E-11 86.7 4.5 121 63-188 98-223 (506)
216 PF07942 N2227: N2227-like pro 98.2 1.7E-05 3.7E-10 72.9 12.3 100 78-181 56-199 (270)
217 PF08123 DOT1: Histone methyla 98.2 8.7E-06 1.9E-10 72.2 10.0 108 70-181 34-155 (205)
218 PRK00536 speE spermidine synth 98.1 1.7E-05 3.8E-10 72.8 10.4 103 77-190 71-177 (262)
219 KOG3045 Predicted RNA methylas 98.1 1.2E-05 2.6E-10 71.9 8.6 86 77-185 179-265 (325)
220 PRK00050 16S rRNA m(4)C1402 me 98.1 8E-06 1.7E-10 76.4 7.8 81 69-152 10-98 (296)
221 KOG2187 tRNA uracil-5-methyltr 98.1 3.9E-06 8.4E-11 82.0 5.8 78 60-139 365-443 (534)
222 KOG2915 tRNA(1-methyladenosine 98.1 3.4E-05 7.3E-10 69.6 11.1 104 68-179 95-204 (314)
223 PF01728 FtsJ: FtsJ-like methy 98.1 5.4E-06 1.2E-10 72.4 5.8 94 78-182 23-137 (181)
224 PRK11760 putative 23S rRNA C24 98.1 3E-05 6.5E-10 73.0 10.5 87 76-177 209-296 (357)
225 PF00398 RrnaAD: Ribosomal RNA 98.1 1.4E-05 2.9E-10 74.2 8.1 84 65-152 17-105 (262)
226 PF13679 Methyltransf_32: Meth 98.0 2.1E-05 4.6E-10 65.7 8.3 74 77-150 24-105 (141)
227 PRK01544 bifunctional N5-gluta 98.0 4.4E-05 9.5E-10 77.3 10.4 105 78-183 347-461 (506)
228 COG0144 Sun tRNA and rRNA cyto 97.9 0.00015 3.2E-09 70.2 12.9 117 72-189 150-293 (355)
229 PRK10742 putative methyltransf 97.9 8E-05 1.7E-09 67.3 10.3 87 69-156 77-176 (250)
230 COG0293 FtsJ 23S rRNA methylas 97.9 3.4E-05 7.3E-10 67.7 6.9 95 77-182 44-157 (205)
231 PF05971 Methyltransf_10: Prot 97.9 9.4E-05 2E-09 68.9 10.3 74 79-153 103-186 (299)
232 TIGR01444 fkbM_fam methyltrans 97.9 4.2E-05 9.1E-10 63.8 7.3 57 81-138 1-59 (143)
233 PF09243 Rsm22: Mitochondrial 97.9 0.00016 3.5E-09 67.4 11.7 107 68-176 23-133 (274)
234 PF02384 N6_Mtase: N-6 DNA Met 97.9 8.1E-05 1.8E-09 70.8 9.7 114 68-181 36-180 (311)
235 PF13578 Methyltransf_24: Meth 97.8 9.1E-06 2E-10 64.3 2.5 98 83-184 1-105 (106)
236 PHA01634 hypothetical protein 97.8 9.7E-05 2.1E-09 58.9 8.1 72 76-151 26-99 (156)
237 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00012 2.6E-09 68.5 9.6 114 74-188 81-223 (283)
238 KOG3178 Hydroxyindole-O-methyl 97.8 0.00013 2.7E-09 68.7 9.2 97 80-185 179-276 (342)
239 KOG2730 Methylase [General fun 97.8 3.1E-05 6.7E-10 67.7 4.4 98 78-179 94-197 (263)
240 KOG3201 Uncharacterized conser 97.7 1.4E-05 3E-10 66.4 1.9 114 65-181 16-137 (201)
241 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 3.5E-05 7.5E-10 70.5 4.5 108 76-183 54-198 (256)
242 PF01269 Fibrillarin: Fibrilla 97.7 0.00054 1.2E-08 60.7 11.5 113 63-183 55-177 (229)
243 PF03059 NAS: Nicotianamine sy 97.7 0.0005 1.1E-08 63.5 11.4 103 79-183 121-229 (276)
244 COG0500 SmtA SAM-dependent met 97.7 0.00055 1.2E-08 56.8 10.7 99 82-186 52-157 (257)
245 COG4262 Predicted spermidine s 97.6 0.00029 6.4E-09 66.1 8.8 113 80-192 291-415 (508)
246 TIGR02987 met_A_Alw26 type II 97.5 0.00027 5.9E-09 72.2 8.3 75 78-153 31-121 (524)
247 TIGR03439 methyl_EasF probable 97.5 0.0017 3.6E-08 61.6 12.4 112 68-183 68-196 (319)
248 PF06962 rRNA_methylase: Putat 97.5 0.00053 1.2E-08 56.5 7.7 82 103-185 1-93 (140)
249 KOG1269 SAM-dependent methyltr 97.4 0.00033 7.1E-09 67.5 6.6 106 77-185 109-216 (364)
250 KOG4058 Uncharacterized conser 97.4 0.00061 1.3E-08 55.9 7.1 106 71-183 65-171 (199)
251 COG2384 Predicted SAM-dependen 97.3 0.0027 5.8E-08 56.0 10.3 92 79-175 17-111 (226)
252 KOG1709 Guanidinoacetate methy 97.2 0.0031 6.7E-08 55.3 9.9 104 77-185 100-207 (271)
253 PF04989 CmcI: Cephalosporin h 97.2 0.0024 5.1E-08 56.3 9.3 121 56-186 14-149 (206)
254 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0014 3E-08 63.8 8.2 98 79-183 50-153 (377)
255 COG1889 NOP1 Fibrillarin-like 97.2 0.0036 7.9E-08 54.4 9.6 114 62-183 57-179 (231)
256 KOG2352 Predicted spermine/spe 97.1 0.0026 5.6E-08 62.5 9.4 99 81-182 51-159 (482)
257 KOG1122 tRNA and rRNA cytosine 97.1 0.0041 8.9E-08 59.8 10.5 115 74-189 237-376 (460)
258 PF01861 DUF43: Protein of unk 97.1 0.012 2.5E-07 53.0 12.7 99 73-178 39-142 (243)
259 KOG1227 Putative methyltransfe 97.0 0.0003 6.6E-09 64.4 2.0 97 78-181 194-293 (351)
260 KOG3987 Uncharacterized conser 97.0 0.00016 3.5E-09 62.6 0.1 92 78-183 112-206 (288)
261 KOG4589 Cell division protein 97.0 0.0036 7.8E-08 53.6 8.0 96 76-182 67-182 (232)
262 KOG2798 Putative trehalase [Ca 97.0 0.0095 2E-07 55.2 11.2 120 60-183 125-295 (369)
263 COG5459 Predicted rRNA methyla 97.0 0.0022 4.8E-08 60.1 6.9 114 68-183 103-224 (484)
264 KOG1331 Predicted methyltransf 96.8 0.00073 1.6E-08 61.8 2.7 95 78-182 45-141 (293)
265 TIGR00006 S-adenosyl-methyltra 96.8 0.0095 2.1E-07 56.0 10.0 82 69-152 11-100 (305)
266 PF04672 Methyltransf_19: S-ad 96.7 0.0086 1.9E-07 54.9 8.9 106 80-187 70-193 (267)
267 KOG2671 Putative RNA methylase 96.6 0.0026 5.7E-08 59.5 4.5 76 76-152 206-292 (421)
268 PF07091 FmrO: Ribosomal RNA m 96.6 0.012 2.5E-07 53.4 8.5 83 64-150 93-177 (251)
269 PF11968 DUF3321: Putative met 96.6 0.0061 1.3E-07 53.9 6.5 83 80-179 53-139 (219)
270 KOG1099 SAM-dependent methyltr 96.5 0.0075 1.6E-07 53.4 6.3 96 75-181 37-160 (294)
271 PF04445 SAM_MT: Putative SAM- 96.4 0.012 2.5E-07 53.1 7.4 85 70-155 65-162 (234)
272 COG4798 Predicted methyltransf 96.4 0.01 2.2E-07 51.3 6.4 113 73-186 43-168 (238)
273 KOG2920 Predicted methyltransf 96.3 0.0037 8.1E-08 57.3 3.6 107 76-185 114-235 (282)
274 KOG2793 Putative N2,N2-dimethy 96.1 0.033 7.1E-07 50.7 8.9 99 78-179 86-194 (248)
275 PF03141 Methyltransf_29: Puta 96.0 0.011 2.4E-07 58.4 5.3 105 80-189 367-472 (506)
276 COG1063 Tdh Threonine dehydrog 95.9 0.015 3.3E-07 56.2 5.9 94 77-183 167-268 (350)
277 cd00315 Cyt_C5_DNA_methylase C 95.8 0.02 4.3E-07 53.5 6.0 65 81-152 2-70 (275)
278 PRK09424 pntA NAD(P) transhydr 95.7 0.057 1.2E-06 54.6 9.2 95 77-183 163-284 (509)
279 KOG1253 tRNA methyltransferase 95.6 0.0068 1.5E-07 59.5 2.4 102 78-186 109-218 (525)
280 COG1064 AdhP Zn-dependent alco 95.5 0.07 1.5E-06 50.9 8.5 92 76-185 164-260 (339)
281 COG1867 TRM1 N2,N2-dimethylgua 95.4 0.073 1.6E-06 50.7 8.4 97 79-183 53-153 (380)
282 KOG1562 Spermidine synthase [A 95.1 0.055 1.2E-06 49.9 6.2 112 78-189 121-241 (337)
283 PF11599 AviRa: RRNA methyltra 94.9 0.4 8.7E-06 42.4 10.8 105 78-182 51-212 (246)
284 KOG1596 Fibrillarin and relate 94.9 0.081 1.8E-06 47.3 6.6 99 73-183 151-260 (317)
285 COG1568 Predicted methyltransf 94.9 0.099 2.1E-06 47.8 7.3 77 75-153 149-230 (354)
286 cd08283 FDH_like_1 Glutathione 94.8 0.063 1.4E-06 52.6 6.3 106 74-183 180-305 (386)
287 COG3129 Predicted SAM-dependen 94.7 0.057 1.2E-06 48.0 4.9 75 78-153 78-162 (292)
288 PRK09880 L-idonate 5-dehydroge 94.6 0.17 3.7E-06 48.6 8.7 95 76-183 167-265 (343)
289 KOG3115 Methyltransferase-like 94.5 0.12 2.5E-06 45.2 6.5 103 78-181 60-180 (249)
290 KOG2078 tRNA modification enzy 94.5 0.015 3.3E-07 56.0 1.2 87 43-139 223-311 (495)
291 KOG0024 Sorbitol dehydrogenase 94.4 0.089 1.9E-06 49.3 5.8 94 76-183 167-272 (354)
292 COG0275 Predicted S-adenosylme 94.0 0.44 9.6E-06 44.4 9.5 83 68-152 13-104 (314)
293 PRK11524 putative methyltransf 93.7 0.24 5.3E-06 46.4 7.6 46 76-122 206-252 (284)
294 PF05711 TylF: Macrocin-O-meth 93.6 0.63 1.4E-05 42.5 9.8 124 59-187 55-215 (248)
295 PF00145 DNA_methylase: C-5 cy 93.6 0.11 2.5E-06 49.3 5.2 64 81-152 2-69 (335)
296 PF01795 Methyltransf_5: MraW 93.5 0.16 3.4E-06 47.9 5.8 81 70-152 12-101 (310)
297 PF03269 DUF268: Caenorhabditi 93.4 0.049 1.1E-06 45.8 2.0 96 79-183 2-110 (177)
298 PRK13699 putative methylase; P 93.2 0.42 9.2E-06 43.2 7.9 46 76-122 161-207 (227)
299 PF01555 N6_N4_Mtase: DNA meth 93.1 0.25 5.4E-06 44.1 6.4 42 76-118 189-231 (231)
300 PF07757 AdoMet_MTase: Predict 92.6 0.22 4.7E-06 39.0 4.4 32 78-110 58-89 (112)
301 TIGR03366 HpnZ_proposed putati 92.4 0.36 7.8E-06 44.9 6.7 95 76-183 118-217 (280)
302 TIGR00561 pntA NAD(P) transhyd 92.4 0.41 9E-06 48.4 7.3 93 77-181 162-281 (511)
303 cd08281 liver_ADH_like1 Zinc-d 92.3 0.3 6.5E-06 47.5 6.3 97 74-183 187-289 (371)
304 TIGR00027 mthyl_TIGR00027 meth 92.2 1.2 2.7E-05 41.1 9.8 125 60-186 64-199 (260)
305 KOG2198 tRNA cytosine-5-methyl 92.0 1.3 2.8E-05 42.5 9.7 114 74-188 151-300 (375)
306 TIGR03451 mycoS_dep_FDH mycoth 92.0 0.32 6.9E-06 47.1 6.0 96 75-183 173-275 (358)
307 TIGR00675 dcm DNA-methyltransf 91.9 0.19 4.1E-06 47.9 4.1 64 82-152 1-67 (315)
308 PRK01747 mnmC bifunctional tRN 91.8 0.62 1.4E-05 49.2 8.3 104 78-181 57-203 (662)
309 TIGR01202 bchC 2-desacetyl-2-h 91.7 0.58 1.3E-05 44.3 7.3 84 78-183 144-230 (308)
310 COG0286 HsdM Type I restrictio 91.7 0.78 1.7E-05 46.5 8.5 86 68-153 176-273 (489)
311 cd08239 THR_DH_like L-threonin 91.4 0.46 9.9E-06 45.4 6.3 95 75-182 160-260 (339)
312 cd08230 glucose_DH Glucose deh 91.3 0.69 1.5E-05 44.6 7.5 92 77-183 171-268 (355)
313 KOG0821 Predicted ribosomal RN 91.1 0.79 1.7E-05 40.6 6.7 97 38-140 14-111 (326)
314 cd08237 ribitol-5-phosphate_DH 90.9 1.1 2.3E-05 43.1 8.4 91 76-183 161-255 (341)
315 cd00401 AdoHcyase S-adenosyl-L 90.5 1.9 4.1E-05 42.6 9.6 87 77-184 200-289 (413)
316 PLN02740 Alcohol dehydrogenase 90.2 1.9 4.2E-05 42.0 9.6 45 74-118 194-241 (381)
317 PF02636 Methyltransf_28: Puta 90.1 1.5 3.2E-05 40.3 8.1 68 79-150 19-101 (252)
318 PF07279 DUF1442: Protein of u 90.0 4.6 9.9E-05 35.9 10.5 101 77-185 40-149 (218)
319 PRK11524 putative methyltransf 89.8 0.36 7.9E-06 45.2 3.9 54 129-183 9-79 (284)
320 PRK10309 galactitol-1-phosphat 89.7 0.75 1.6E-05 44.1 6.2 97 75-183 157-259 (347)
321 KOG2651 rRNA adenine N-6-methy 89.6 1.2 2.5E-05 42.8 7.0 39 80-119 155-195 (476)
322 PF02737 3HCDH_N: 3-hydroxyacy 89.5 2 4.3E-05 37.3 8.1 100 81-189 1-119 (180)
323 COG0270 Dcm Site-specific DNA 89.5 0.64 1.4E-05 44.5 5.4 67 80-152 4-75 (328)
324 PF06859 Bin3: Bicoid-interact 89.0 0.16 3.6E-06 39.9 0.7 43 144-186 1-46 (110)
325 KOG2912 Predicted DNA methylas 89.0 1.2 2.6E-05 41.7 6.4 69 83-152 107-186 (419)
326 COG0686 Ald Alanine dehydrogen 88.9 1.5 3.3E-05 41.0 7.1 95 79-182 168-266 (371)
327 cd05188 MDR Medium chain reduc 88.9 1.5 3.3E-05 39.8 7.3 93 77-183 133-231 (271)
328 KOG3924 Putative protein methy 88.6 1.4 3.1E-05 42.5 6.8 109 70-182 184-306 (419)
329 PF05206 TRM13: Methyltransfer 88.5 5.4 0.00012 36.8 10.5 65 77-141 17-87 (259)
330 PRK13699 putative methylase; P 88.0 0.46 1E-05 43.0 3.1 53 129-182 2-70 (227)
331 cd08254 hydroxyacyl_CoA_DH 6-h 87.8 1.2 2.6E-05 42.3 6.0 94 76-183 163-262 (338)
332 PRK05854 short chain dehydroge 87.8 4.3 9.3E-05 38.4 9.8 76 76-152 11-101 (313)
333 COG3510 CmcI Cephalosporin hyd 87.3 2.5 5.4E-05 36.8 6.9 120 57-189 52-185 (237)
334 PRK12475 thiamine/molybdopteri 87.2 1.5 3.1E-05 42.3 6.2 74 77-150 22-122 (338)
335 PRK10458 DNA cytosine methylas 87.1 3.3 7.1E-05 41.7 8.7 59 79-140 88-147 (467)
336 KOG1201 Hydroxysteroid 17-beta 87.0 3.9 8.4E-05 38.2 8.5 73 76-152 35-122 (300)
337 cd08285 NADP_ADH NADP(H)-depen 86.7 1.2 2.6E-05 42.8 5.4 95 75-182 163-264 (351)
338 PLN02827 Alcohol dehydrogenase 86.5 3.7 8.1E-05 40.0 8.8 95 75-182 190-293 (378)
339 cd08232 idonate-5-DH L-idonate 86.2 4.2 9.2E-05 38.6 8.9 90 77-182 164-260 (339)
340 COG2933 Predicted SAM-dependen 86.2 1.7 3.7E-05 39.6 5.6 87 76-177 209-296 (358)
341 TIGR02356 adenyl_thiF thiazole 86.0 2.2 4.9E-05 37.7 6.3 34 77-110 19-54 (202)
342 COG1062 AdhC Zn-dependent alco 85.9 2.1 4.6E-05 40.7 6.3 47 74-120 181-230 (366)
343 COG1255 Uncharacterized protei 85.4 5 0.00011 31.8 7.1 59 80-150 15-76 (129)
344 KOG0022 Alcohol dehydrogenase, 85.1 2.2 4.7E-05 40.1 5.9 44 76-119 190-236 (375)
345 PRK07688 thiamine/molybdopteri 85.0 2 4.3E-05 41.3 5.9 74 77-150 22-122 (339)
346 TIGR02822 adh_fam_2 zinc-bindi 85.0 5.8 0.00013 37.8 9.2 88 75-183 162-253 (329)
347 cd08278 benzyl_alcohol_DH Benz 85.0 1.7 3.7E-05 42.1 5.6 90 76-182 184-283 (365)
348 COG4301 Uncharacterized conser 84.9 15 0.00033 33.5 10.7 102 78-183 78-192 (321)
349 PF04072 LCM: Leucine carboxyl 84.3 1.7 3.7E-05 37.7 4.7 108 61-169 60-181 (183)
350 TIGR02819 fdhA_non_GSH formald 84.2 2.1 4.6E-05 42.0 5.9 101 75-183 182-298 (393)
351 cd00757 ThiF_MoeB_HesA_family 83.7 3.2 6.9E-05 37.5 6.4 74 77-150 19-117 (228)
352 PRK08644 thiamine biosynthesis 83.7 4.4 9.6E-05 36.2 7.2 73 78-150 27-123 (212)
353 PRK15001 SAM-dependent 23S rib 83.6 7.7 0.00017 37.9 9.3 92 81-181 47-139 (378)
354 PF06460 NSP13: Coronavirus NS 83.4 6.4 0.00014 36.0 7.9 111 60-182 42-167 (299)
355 TIGR00518 alaDH alanine dehydr 82.8 2.7 5.8E-05 41.0 5.9 38 77-115 165-205 (370)
356 cd01492 Aos1_SUMO Ubiquitin ac 82.5 4.8 0.0001 35.5 6.8 74 78-151 20-117 (197)
357 PF00107 ADH_zinc_N: Zinc-bind 82.5 0.31 6.7E-06 39.4 -0.7 82 88-186 1-91 (130)
358 PF03686 UPF0146: Uncharacteri 82.4 5.4 0.00012 32.3 6.4 70 66-150 4-76 (127)
359 PF10354 DUF2431: Domain of un 82.4 7.4 0.00016 33.3 7.7 100 84-184 2-125 (166)
360 COG1565 Uncharacterized conser 82.3 5.1 0.00011 38.5 7.2 45 78-122 77-131 (370)
361 cd08231 MDR_TM0436_like Hypoth 82.2 9.2 0.0002 36.8 9.4 94 77-183 176-279 (361)
362 cd08233 butanediol_DH_like (2R 81.9 3.4 7.3E-05 39.7 6.2 97 74-183 168-271 (351)
363 PRK06035 3-hydroxyacyl-CoA deh 81.9 9.1 0.0002 35.8 8.9 93 80-181 4-118 (291)
364 PRK09260 3-hydroxybutyryl-CoA 81.6 7 0.00015 36.6 8.0 99 80-186 2-119 (288)
365 PF03492 Methyltransf_7: SAM d 81.4 20 0.00042 34.5 11.1 106 78-183 16-182 (334)
366 PLN02586 probable cinnamyl alc 81.3 9.9 0.00022 36.7 9.3 91 77-183 182-277 (360)
367 TIGR02354 thiF_fam2 thiamine b 81.3 12 0.00026 33.1 8.9 34 77-110 19-54 (200)
368 cd01065 NAD_bind_Shikimate_DH 81.2 15 0.00032 30.4 9.2 81 66-152 6-89 (155)
369 cd05278 FDH_like Formaldehyde 81.1 3.3 7.1E-05 39.5 5.8 94 76-182 165-265 (347)
370 PRK07819 3-hydroxybutyryl-CoA 80.6 7.6 0.00017 36.4 7.9 97 80-185 6-122 (286)
371 PF03721 UDPG_MGDP_dh_N: UDP-g 80.6 6.5 0.00014 34.3 6.9 99 81-183 2-119 (185)
372 PRK06139 short chain dehydroge 80.1 12 0.00025 35.9 9.1 73 77-152 5-92 (330)
373 PRK07063 short chain dehydroge 80.0 10 0.00022 34.4 8.5 74 77-151 5-93 (260)
374 COG1748 LYS9 Saccharopine dehy 80.0 5.1 0.00011 39.2 6.6 68 80-152 2-76 (389)
375 TIGR03201 dearomat_had 6-hydro 80.0 8.8 0.00019 36.8 8.4 43 75-118 163-208 (349)
376 PRK07530 3-hydroxybutyryl-CoA 79.9 16 0.00036 34.1 10.0 98 80-186 5-121 (292)
377 PRK08293 3-hydroxybutyryl-CoA 79.9 10 0.00022 35.5 8.5 95 80-182 4-118 (287)
378 TIGR00936 ahcY adenosylhomocys 79.6 15 0.00032 36.3 9.7 85 77-183 193-281 (406)
379 PRK06197 short chain dehydroge 79.5 15 0.00033 34.3 9.7 76 76-152 13-103 (306)
380 PRK05808 3-hydroxybutyryl-CoA 79.4 18 0.0004 33.5 10.1 98 80-186 4-120 (282)
381 cd08240 6_hydroxyhexanoate_dh_ 79.4 5.4 0.00012 38.1 6.7 90 77-182 174-272 (350)
382 PRK07066 3-hydroxybutyryl-CoA 79.4 11 0.00024 35.9 8.6 93 80-180 8-115 (321)
383 TIGR02818 adh_III_F_hyde S-(hy 79.2 6 0.00013 38.4 7.0 45 74-118 181-228 (368)
384 cd01487 E1_ThiF_like E1_ThiF_l 78.8 8.1 0.00018 33.3 6.9 30 81-110 1-32 (174)
385 PF01488 Shikimate_DH: Shikima 78.7 4.9 0.00011 33.0 5.3 71 75-151 8-82 (135)
386 PF02254 TrkA_N: TrkA-N domain 78.7 8.8 0.00019 30.1 6.7 58 83-150 2-68 (116)
387 cd05285 sorbitol_DH Sorbitol d 78.6 6.6 0.00014 37.5 7.0 96 74-182 158-263 (343)
388 PRK05476 S-adenosyl-L-homocyst 78.4 15 0.00033 36.4 9.5 85 77-183 210-298 (425)
389 TIGR02825 B4_12hDH leukotriene 78.4 5.8 0.00013 37.5 6.5 96 73-183 133-236 (325)
390 cd05279 Zn_ADH1 Liver alcohol 78.4 6.7 0.00014 37.9 7.0 95 74-182 179-283 (365)
391 PF11899 DUF3419: Protein of u 77.9 7.3 0.00016 38.1 7.0 44 72-116 29-73 (380)
392 cd08236 sugar_DH NAD(P)-depend 77.7 7.1 0.00015 37.1 6.9 93 75-183 156-257 (343)
393 cd08261 Zn_ADH7 Alcohol dehydr 77.6 4.2 9E-05 38.7 5.3 95 74-182 155-256 (337)
394 COG0604 Qor NADPH:quinone redu 77.6 5.3 0.00011 38.2 5.9 96 73-183 137-240 (326)
395 cd08265 Zn_ADH3 Alcohol dehydr 77.5 6.1 0.00013 38.5 6.5 96 75-182 200-305 (384)
396 PRK08589 short chain dehydroge 77.4 18 0.00039 33.2 9.4 73 77-152 4-90 (272)
397 PRK05708 2-dehydropantoate 2-r 77.2 12 0.00025 35.5 8.1 94 80-183 3-103 (305)
398 KOG2352 Predicted spermine/spe 77.2 2.7 5.9E-05 41.8 3.8 104 79-183 296-415 (482)
399 TIGR03693 ocin_ThiF_like putat 77.0 14 0.0003 38.2 8.8 73 78-150 128-210 (637)
400 PF10237 N6-adenineMlase: Prob 77.0 44 0.00094 28.5 10.6 106 64-185 13-124 (162)
401 cd08294 leukotriene_B4_DH_like 76.1 5.3 0.00011 37.7 5.5 95 74-183 139-240 (329)
402 PRK05867 short chain dehydroge 76.0 14 0.00031 33.3 8.2 73 77-152 7-94 (253)
403 PRK05690 molybdopterin biosynt 75.9 9.7 0.00021 34.8 6.9 34 77-110 30-65 (245)
404 cd01488 Uba3_RUB Ubiquitin act 75.9 10 0.00022 35.7 7.1 70 81-150 1-94 (291)
405 PRK12548 shikimate 5-dehydroge 75.7 27 0.00059 32.7 10.1 89 63-152 110-207 (289)
406 cd08263 Zn_ADH10 Alcohol dehyd 75.7 6.5 0.00014 38.0 6.1 92 76-183 185-286 (367)
407 PRK05876 short chain dehydroge 75.7 17 0.00036 33.6 8.6 73 77-152 4-91 (275)
408 PLN03154 putative allyl alcoho 75.6 5.5 0.00012 38.3 5.5 96 74-183 154-257 (348)
409 PLN02494 adenosylhomocysteinas 75.4 12 0.00026 37.6 7.8 96 67-183 241-340 (477)
410 PRK08223 hypothetical protein; 75.4 11 0.00023 35.4 7.1 74 77-150 25-123 (287)
411 cd08279 Zn_ADH_class_III Class 75.4 7.8 0.00017 37.4 6.6 92 75-182 179-280 (363)
412 TIGR02437 FadB fatty oxidation 75.3 13 0.00027 39.8 8.5 100 80-188 314-432 (714)
413 PRK06914 short chain dehydroge 75.2 17 0.00036 33.4 8.5 72 79-151 3-88 (280)
414 cd08255 2-desacetyl-2-hydroxye 75.1 14 0.0003 33.9 7.9 93 74-182 93-188 (277)
415 PRK08339 short chain dehydroge 75.0 17 0.00037 33.2 8.4 74 77-152 6-93 (263)
416 cd01483 E1_enzyme_family Super 74.9 14 0.0003 30.4 7.1 70 81-150 1-95 (143)
417 cd08286 FDH_like_ADH2 formalde 74.6 8.2 0.00018 36.8 6.5 94 76-182 164-264 (345)
418 PRK07035 short chain dehydroge 74.6 17 0.00038 32.7 8.3 73 77-152 6-93 (252)
419 PRK08306 dipicolinate synthase 74.6 22 0.00048 33.5 9.1 86 76-181 149-238 (296)
420 PRK05225 ketol-acid reductoiso 74.6 4.3 9.4E-05 40.4 4.4 94 76-187 33-134 (487)
421 COG3315 O-Methyltransferase in 74.6 9.7 0.00021 35.9 6.7 122 60-184 75-209 (297)
422 PRK07062 short chain dehydroge 74.4 18 0.00038 33.0 8.4 75 77-152 6-95 (265)
423 PRK06172 short chain dehydroge 74.2 19 0.00041 32.5 8.4 73 77-152 5-92 (253)
424 PLN03209 translocon at the inn 74.1 12 0.00027 38.5 7.7 76 74-151 75-166 (576)
425 PRK08862 short chain dehydroge 74.1 18 0.00039 32.4 8.2 73 77-152 3-91 (227)
426 cd08234 threonine_DH_like L-th 74.0 23 0.0005 33.4 9.4 93 74-182 155-255 (334)
427 cd08293 PTGR2 Prostaglandin re 74.0 5 0.00011 38.3 4.7 89 80-182 156-252 (345)
428 KOG2013 SMT3/SUMO-activating c 73.8 5 0.00011 39.8 4.5 73 78-150 11-109 (603)
429 PRK05597 molybdopterin biosynt 73.6 11 0.00025 36.4 7.1 74 77-150 26-124 (355)
430 PRK11730 fadB multifunctional 73.4 17 0.00037 38.8 8.9 99 80-187 314-431 (715)
431 PRK06124 gluconate 5-dehydroge 73.3 20 0.00044 32.3 8.5 72 77-151 9-95 (256)
432 PRK06128 oxidoreductase; Provi 73.3 40 0.00087 31.4 10.7 73 77-152 53-142 (300)
433 cd05281 TDH Threonine dehydrog 73.1 9.6 0.00021 36.3 6.5 93 77-182 162-260 (341)
434 PF03712 Cu2_monoox_C: Copper 73.0 9.3 0.0002 32.3 5.6 34 326-360 73-106 (156)
435 PLN02545 3-hydroxybutyryl-CoA 72.8 29 0.00062 32.5 9.5 99 80-187 5-122 (295)
436 KOG1205 Predicted dehydrogenas 72.8 21 0.00044 33.4 8.2 75 77-152 10-99 (282)
437 PRK11154 fadJ multifunctional 72.8 19 0.00042 38.4 9.1 99 80-187 310-428 (708)
438 PRK08324 short chain dehydroge 72.7 27 0.00059 37.0 10.3 72 77-152 420-506 (681)
439 PF02558 ApbA: Ketopantoate re 72.5 13 0.00028 30.7 6.5 86 82-182 1-99 (151)
440 PRK07806 short chain dehydroge 72.5 66 0.0014 28.7 11.6 104 77-183 4-133 (248)
441 PRK09242 tropinone reductase; 72.4 22 0.00048 32.1 8.5 74 77-151 7-95 (257)
442 PRK06130 3-hydroxybutyryl-CoA 72.2 23 0.0005 33.4 8.8 94 80-181 5-112 (311)
443 TIGR02441 fa_ox_alpha_mit fatt 72.0 14 0.00031 39.5 7.9 100 80-188 336-454 (737)
444 KOG0725 Reductases with broad 72.0 36 0.00078 31.6 9.8 76 76-152 5-97 (270)
445 PRK06194 hypothetical protein; 72.0 23 0.0005 32.6 8.6 73 77-152 4-91 (287)
446 PLN02178 cinnamyl-alcohol dehy 71.7 30 0.00065 33.7 9.7 90 77-183 177-272 (375)
447 PRK12549 shikimate 5-dehydroge 71.7 45 0.00098 31.1 10.4 86 62-151 110-199 (284)
448 PF05430 Methyltransf_30: S-ad 71.2 3.6 7.7E-05 33.4 2.5 54 129-182 33-88 (124)
449 PRK08328 hypothetical protein; 71.2 17 0.00036 32.9 7.2 32 78-109 26-59 (231)
450 KOG2539 Mitochondrial/chloropl 71.2 4.6 0.0001 40.0 3.7 106 76-182 198-313 (491)
451 PF00106 adh_short: short chai 71.1 20 0.00043 29.8 7.4 70 80-151 1-87 (167)
452 PRK08213 gluconate 5-dehydroge 71.1 25 0.00053 31.9 8.5 73 77-152 10-97 (259)
453 PRK08703 short chain dehydroge 71.1 33 0.00072 30.5 9.3 59 77-137 4-66 (239)
454 PRK07677 short chain dehydroge 70.8 22 0.00049 32.0 8.1 71 79-152 1-86 (252)
455 PLN02514 cinnamyl-alcohol dehy 70.7 23 0.0005 34.1 8.6 92 77-183 179-274 (357)
456 PRK08303 short chain dehydroge 70.7 30 0.00065 32.6 9.1 73 77-152 6-103 (305)
457 KOG1208 Dehydrogenases with di 70.2 38 0.00083 32.2 9.7 75 77-152 33-122 (314)
458 PRK08945 putative oxoacyl-(acy 70.1 30 0.00065 31.0 8.8 74 76-151 9-99 (247)
459 TIGR00853 pts-lac PTS system, 70.1 21 0.00045 27.3 6.5 53 80-151 4-57 (95)
460 cd05284 arabinose_DH_like D-ar 70.0 13 0.00029 35.2 6.7 91 76-182 165-264 (340)
461 PRK05866 short chain dehydroge 69.9 25 0.00055 32.8 8.4 72 77-151 38-124 (293)
462 PF07991 IlvN: Acetohydroxy ac 69.9 12 0.00026 31.8 5.5 91 78-185 3-96 (165)
463 PRK07109 short chain dehydroge 69.7 28 0.0006 33.3 8.8 73 77-152 6-93 (334)
464 PRK07478 short chain dehydroge 69.6 28 0.0006 31.4 8.5 73 77-152 4-91 (254)
465 PRK07890 short chain dehydroge 69.6 28 0.00061 31.3 8.5 73 77-152 3-90 (258)
466 PRK07411 hypothetical protein; 69.5 12 0.00027 36.7 6.4 73 78-150 37-134 (390)
467 PRK09291 short chain dehydroge 69.5 29 0.00062 31.2 8.6 70 79-151 2-80 (257)
468 PRK08762 molybdopterin biosynt 69.2 15 0.00032 35.9 6.9 34 77-110 133-168 (376)
469 PRK07417 arogenate dehydrogena 69.0 23 0.00049 32.9 7.8 88 81-186 2-92 (279)
470 COG0059 IlvC Ketol-acid reduct 68.9 21 0.00045 33.6 7.2 91 77-185 16-110 (338)
471 PRK07453 protochlorophyllide o 68.8 29 0.00063 32.7 8.7 72 78-152 5-91 (322)
472 cd08300 alcohol_DH_class_III c 68.8 16 0.00035 35.3 7.1 96 75-183 183-287 (368)
473 cd08295 double_bond_reductase_ 68.7 13 0.00027 35.5 6.2 94 74-182 147-249 (338)
474 COG0863 DNA modification methy 68.7 21 0.00045 33.3 7.6 48 75-123 219-267 (302)
475 PRK09186 flagellin modificatio 68.5 27 0.00059 31.4 8.2 74 78-152 3-91 (256)
476 PF02826 2-Hacid_dh_C: D-isome 68.5 5.9 0.00013 34.2 3.5 90 75-181 32-124 (178)
477 PRK06522 2-dehydropantoate 2-r 68.4 27 0.00059 32.5 8.4 91 81-182 2-98 (304)
478 PRK06113 7-alpha-hydroxysteroi 68.2 30 0.00065 31.2 8.4 72 77-151 9-95 (255)
479 cd08287 FDH_like_ADH3 formalde 68.2 11 0.00025 35.7 5.8 95 75-182 165-266 (345)
480 PRK07791 short chain dehydroge 68.0 41 0.00088 31.2 9.4 73 77-152 4-100 (286)
481 cd08242 MDR_like Medium chain 67.8 41 0.00088 31.5 9.5 90 74-182 151-243 (319)
482 PF05050 Methyltransf_21: Meth 67.8 11 0.00024 31.4 5.0 52 84-135 1-60 (167)
483 PRK07904 short chain dehydroge 67.6 27 0.00059 31.7 8.0 73 78-151 7-94 (253)
484 cd08301 alcohol_DH_plants Plan 67.5 17 0.00036 35.2 6.9 44 75-118 184-230 (369)
485 cd00755 YgdL_like Family of ac 67.5 18 0.00039 32.8 6.5 33 78-110 10-44 (231)
486 cd08296 CAD_like Cinnamyl alco 67.5 17 0.00037 34.5 6.8 94 75-182 160-257 (333)
487 PRK07097 gluconate 5-dehydroge 67.3 33 0.00071 31.2 8.5 73 77-152 8-95 (265)
488 PRK06125 short chain dehydroge 67.3 32 0.0007 31.1 8.4 74 77-152 5-89 (259)
489 PRK06196 oxidoreductase; Provi 67.3 32 0.0007 32.4 8.6 69 77-152 24-107 (315)
490 PLN02989 cinnamyl-alcohol dehy 67.0 24 0.00052 33.2 7.8 72 78-151 4-84 (325)
491 cd08277 liver_alcohol_DH_like 67.0 18 0.00038 35.0 6.9 43 75-117 181-226 (365)
492 TIGR00692 tdh L-threonine 3-de 66.8 11 0.00023 35.9 5.3 94 77-183 160-260 (340)
493 PRK08217 fabG 3-ketoacyl-(acyl 66.8 34 0.00073 30.6 8.4 73 77-152 3-90 (253)
494 PRK07831 short chain dehydroge 66.7 36 0.00078 30.9 8.6 74 77-152 15-105 (262)
495 cd08256 Zn_ADH2 Alcohol dehydr 66.3 12 0.00027 35.7 5.7 92 75-182 171-272 (350)
496 PRK09072 short chain dehydroge 66.3 33 0.00072 31.1 8.3 70 78-151 4-87 (263)
497 cd01484 E1-2_like Ubiquitin ac 66.2 24 0.00052 32.0 7.1 70 81-150 1-97 (234)
498 PRK07523 gluconate 5-dehydroge 66.2 33 0.00071 30.9 8.2 73 77-152 8-95 (255)
499 PRK12826 3-ketoacyl-(acyl-carr 66.1 38 0.00082 30.2 8.6 73 77-152 4-91 (251)
500 PRK06249 2-dehydropantoate 2-r 65.8 22 0.00048 33.6 7.2 92 80-183 6-105 (313)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-62 Score=448.99 Aligned_cols=325 Identities=42% Similarity=0.709 Sum_probs=297.1
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHH
Q 016314 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHA 116 (391)
Q Consensus 37 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a 116 (391)
....+.||++|+.+..|+.||+|.+|+.+|+.+|.++...+++++|||+|||||++++++|++|+++|+|||.|.+++.|
T Consensus 19 ~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a 98 (346)
T KOG1499|consen 19 MTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFA 98 (346)
T ss_pred cchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHH
Confidence 34667899999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016314 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 195 (391)
++.+..|++++.|+++++.++++.+| +++|+|+||||||++..|.++++++.+..++|+|||.++|+.++++++++.+.
T Consensus 99 ~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~ 178 (346)
T KOG1499|consen 99 RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDD 178 (346)
T ss_pred HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999875
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016314 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
. ...+.+.+|+ ++|||||+++.+ ....++.++.+.+++++++|+.+.++|+.++..+++
T Consensus 179 ~------~~~~~i~fW~-------~Vygfdms~~~~--------~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~ 237 (346)
T KOG1499|consen 179 S------YKDDKIGFWD-------DVYGFDMSCIKK--------IAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDL 237 (346)
T ss_pred h------hhhhhcCccc-------cccccchhhhhh--------hhhcccceeccChhHhcccceeeEEeeeeeeeccce
Confidence 2 3456678895 999999999954 344568899999999999999999999999999999
Q ss_pred cceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEE
Q 016314 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSM 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~ 355 (391)
.++..|++.++ +++.+|||++|||+.|.... +...+.+||+|. .+.|||+|+||.|+.|+.|+.|+.|.+++.+
T Consensus 238 -~F~s~f~l~v~-r~~~i~g~v~yFDv~F~~~~---~~~~~~fST~P~-~p~THWKQtVfyl~~p~~v~~ge~i~g~it~ 311 (346)
T KOG1499|consen 238 -SFTSPFKLKVT-RNGYLHAFVAYFDVEFTGCH---GKKRLGFSTSPS-SPYTHWKQTVFYLENPLTVKEGEDITGTITM 311 (346)
T ss_pred -eeccceEEEEc-cCceEEEEEEEEEEeeccCC---CCCcceeecCCC-CCCceeeeEEEEecCccceecCceEEEEEEE
Confidence 69999999999 99999999999999997651 126799999995 8999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEEEEEEEeccccccCCcccceee
Q 016314 356 TRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (391)
.++.+|+|.+++.+.|+.++. +..-+...++|-
T Consensus 312 ~~~~~~~R~l~~~l~~~~~~~-~~~~~~~~~~y~ 344 (346)
T KOG1499|consen 312 KPNKKNNRDLDISLSLNFKGQ-GLCSFSESDSYP 344 (346)
T ss_pred eeCCCCCccceEEEEEecCCc-cccccccccccc
Confidence 999999999999999999998 443444444443
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=5.2e-51 Score=367.22 Aligned_cols=318 Identities=37% Similarity=0.615 Sum_probs=283.5
Q ss_pred cccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHH
Q 016314 35 DKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSD 114 (391)
Q Consensus 35 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~ 114 (391)
.++.....||..|+++..+.+|+.|.+|+..|.++|.++...++++.|||+|||+|+++++++++|+++|+|||.|+|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq 213 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ 213 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeeccc
Q 016314 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 194 (391)
+|++.++.|.+.++|.++.|.++++++|+++|+||||+|++.+.+|.++++.+.+. ++|+|.|.++|....+.++|..+
T Consensus 214 yA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsD 292 (517)
T KOG1500|consen 214 YARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSD 292 (517)
T ss_pred HHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccch
Confidence 99999999999999999999999999999999999999999999999999999987 99999999999999999999976
Q ss_pred CcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccc
Q 016314 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDD 274 (391)
Q Consensus 195 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~ 274 (391)
. +.+.+......+|.. .+.||+|++.+..... +-|+.+|.++.+++.-+...+ ....+||.....++
T Consensus 293 E---~Ly~E~~nkAnFWyQ-----q~fyGVdLt~L~g~a~----~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEed 359 (517)
T KOG1500|consen 293 E---QLYVEQFNKANFWYQ-----QNFYGVDLTPLYGSAH----QEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEED 359 (517)
T ss_pred H---HHHHHHHhhhhhhhh-----hccccccchhhhhhhh----hhhhccccccccccceeeccc-hHhhhhhhhcccch
Confidence 4 445555667788975 6899999999855332 347789999998887655544 66789999999999
Q ss_pred ccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEE
Q 016314 275 IREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~ 354 (391)
+..+...+++.+. ..|.+||+++|||+.|.++ .-.+.++|+| ..+.|||.|..+.|..|+.|++|++|++++.
T Consensus 360 lh~i~iPlkF~~~-~~g~iHGLAfWFDV~F~GS-----~~~~wlsTap-~apltHwyqvrCll~~Pi~v~aGq~ltGr~~ 432 (517)
T KOG1500|consen 360 LHEIDIPLKFHAL-QCGRIHGLAFWFDVLFDGS-----TVQVWLSTAP-TAPLTHWYQVRCLLSQPIFVKAGQTLTGRLL 432 (517)
T ss_pred heeecccceehhh-hhcceeeeeeEEEEEeccc-----eEEEccCCCC-CCCcccceeeeeeccCchhhhcCCeeeeeEE
Confidence 9778888899888 8899999999999999876 4457899999 5899999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEEEEEEEec
Q 016314 355 MTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 355 ~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+..+.. .+|+|.+.+.++.
T Consensus 433 LiA~~~--QSY~i~i~l~~~~ 451 (517)
T KOG1500|consen 433 LIANSR--QSYDITITLSAKM 451 (517)
T ss_pred EEEccc--cceeEEEEEEeee
Confidence 988775 4788888777654
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=2e-44 Score=352.90 Aligned_cols=274 Identities=32% Similarity=0.509 Sum_probs=209.8
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC--------CCCEEEEECCcccHHHHHHHHcC-----CCeEEEEech-HHHHHHHHHH
Q 016314 55 EMLSDRVRMDAYFNSIFQNKHHF--------QGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~--------~~~~VLDlGcG~G~ls~~~a~~g-----~~~V~avD~s-~~~~~a~~~~ 120 (391)
.+.+|..+|+.|.+||.+++... ++++|||||||+|.|+.++++++ +.+|+|||.| .+...+++++
T Consensus 155 ~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 155 VFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 45689999999999998765321 35789999999999999999886 5799999999 5565666777
Q ss_pred HHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016314 121 KANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 121 ~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
+.|+++++|+++++|++++.+|+++|+||||+||+++.+| ..+.++.++.|+|||+|++||..++.|++|+.+..+.+.
T Consensus 235 ~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 235 NANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp HHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred HhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 9999999999999999999999999999999999999998 456679999999999999999999999999987532111
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccc-eeEEEEEcCCCCc--ccccc
Q 016314 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTA-AVVKNIDCSTATV--DDIRE 277 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~dl~~~~~--~~~~~ 277 (391)
+..|. . ...+..|.+..+++...++.+ ..+++|++.+... +....
T Consensus 314 -------~~~~~-------~------------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~ 361 (448)
T PF05185_consen 314 -------VRNWW-------N------------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNS 361 (448)
T ss_dssp -------HHHHH-------G------------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSE
T ss_pred -------HHhhc-------c------------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhh
Confidence 11111 0 011223556666666778888 8899998887662 23336
Q ss_pred eeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC---CCCCCccceEEecCCccccCCCCEEEEEEE
Q 016314 278 VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST---YNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354 (391)
Q Consensus 278 ~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~---~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~ 354 (391)
+...+++.+. ++|++|||++||++.|++ +|.|||+|.. .+++||+|++|||++|+.|++|++|++++
T Consensus 362 r~~~~~F~i~-~~g~vhGfagwFd~~Ly~--------~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i- 431 (448)
T PF05185_consen 362 RSSELEFKIK-RDGVVHGFAGWFDAVLYG--------DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHI- 431 (448)
T ss_dssp EEEEEEEEBS-SSEEEEEEEEEEEEEEEC--------SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEE-
T ss_pred eeeeEEEeeC-CCcEEEEEEEEEEEEeeC--------CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEE-
Confidence 7888999998 999999999999999964 5999999952 26899999999999999999999998665
Q ss_pred EEeCCCCCeeeEEEEEEEEec
Q 016314 355 MTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 355 ~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+|+.+++| |||||.|++
T Consensus 432 -~R~~~~~~---vWYEW~v~s 448 (448)
T PF05185_consen 432 -WRKTDDRK---VWYEWSVES 448 (448)
T ss_dssp -EEECCSTC---EEEEEEEEE
T ss_pred -EEEcCCCc---EEEEEEEeC
Confidence 77888888 999999874
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.98 E-value=9.4e-32 Score=255.79 Aligned_cols=288 Identities=22% Similarity=0.326 Sum_probs=222.6
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC-----C--CCEEEEECCcccHHHHHHHHc---CC--CeEEEEech-HHHHHHHHHHH
Q 016314 55 EMLSDRVRMDAYFNSIFQNKHHF-----Q--GKTVLDVGTGSGILAIWSAQA---GA--RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcG~G~ls~~~a~~---g~--~~V~avD~s-~~~~~a~~~~~ 121 (391)
.+-.|.+.|..|.+||..++... + -.+|+-+|+|.|.+.....++ -. -+++|||.+ .++-.... .+
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RN 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hc
Confidence 34578999999999998775432 1 246889999999986554443 21 268999999 55444433 55
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016314 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
...++++|+++.+|++.+..| ++.|++|||++|.+.++|- -+..|+.+.++|||+|+.||..++.|.+|+.+..+
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l--- 491 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL--- 491 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH---
Confidence 567788899999999999987 9999999999999999984 46679999999999999999999999999987532
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016314 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
|+...+. . +...| ..+.+..++.-..|++|+.+++|......++--.+...
T Consensus 492 ----------~q~v~a~-~-----~~~~f-------------e~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~ 542 (649)
T KOG0822|consen 492 ----------YQEVKAT-N-----DPNAF-------------EAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSK 542 (649)
T ss_pred ----------HHHHHhc-C-----Ccccc-------------ccceEEEecceeecCCCCceeEEecCCcccccccccce
Confidence 3322111 0 11222 23556667777778889999999887654433224555
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeC
Q 016314 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRS 358 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~ 358 (391)
..+|++. .+|.+|||++|||+.| +++|.||+.|.+ +.+.+|++++|||++|+.|..|++|++.| +|.
T Consensus 543 s~eF~~~-~~~~lHGFaGYFd~~L--------YkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~--wR~ 611 (649)
T KOG0822|consen 543 SVEFKVK-SNGVLHGFAGYFDAVL--------YKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHF--WRC 611 (649)
T ss_pred eEEEecC-CCceEeecchhhhhhh--------hheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEE--EEE
Confidence 6677777 9999999999999999 568999999974 35689999999999999999999999655 888
Q ss_pred CCCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016314 359 KENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 359 ~~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
.++.+ |||||.|+ .++ .+.=+..|++|++
T Consensus 612 ~d~~k---VWYEW~v~~~~~l~~~~~s~iHN~~Grsy~~ 647 (649)
T KOG0822|consen 612 VDSTK---VWYEWSVESFIYLMKPSSSEIHNPNGRSYSM 647 (649)
T ss_pred eCCce---eEEEEEeeeeecccCCCcccccCCCCceeec
Confidence 88888 99999998 455 4446778888875
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.94 E-value=9.8e-26 Score=220.19 Aligned_cols=296 Identities=19% Similarity=0.252 Sum_probs=197.0
Q ss_pred hcCChHhHHHHHHHHHhcCCCC---------------------------------CCCEEEEECCcccHHHHHHHHc---
Q 016314 56 MLSDRVRMDAYFNSIFQNKHHF---------------------------------QGKTVLDVGTGSGILAIWSAQA--- 99 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDlGcG~G~ls~~~a~~--- 99 (391)
+-+|...|+.|.++|.+++... ...+|+-+|+|.|.|.-.+.++
T Consensus 645 FEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~ 724 (1072)
T PTZ00357 645 FERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSA 724 (1072)
T ss_pred HcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHH
Confidence 4578899999999888775210 0136899999999985544443
Q ss_pred -CCC-eEEEEech-HHHHHHHHH-HHHcCC-------CCcEEEEEcccccCCCC------------CcccEEEEcccccc
Q 016314 100 -GAR-KVYAVEAT-KMSDHARTL-VKANNL-------QDVVEVIEGSVEDIVLP------------EKVDVIISEWMGYF 156 (391)
Q Consensus 100 -g~~-~V~avD~s-~~~~~a~~~-~~~~~~-------~~~v~~~~~d~~~~~~~------------~~~D~Ivs~~~~~~ 156 (391)
|.+ +|+|||.| ..+...+.+ .....+ .++|+++..|++.+..+ +++|+||||++|.+
T Consensus 725 ~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 725 LGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred cCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 322 79999999 644443333 233345 34699999999998543 27999999999999
Q ss_pred ccCcchHHHHHHHHhccccC----Ce-------EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccc
Q 016314 157 LLRESMFDSVICARDRWLKP----TG-------VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVD 225 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~Lkp----gG-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~d 225 (391)
.++|- -+..|+.+.+.||+ +| +.||..++.|++|+.+..+.+..... ...|+-
T Consensus 805 GDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~---------------~~~glt 868 (1072)
T PTZ00357 805 GDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA---------------AVKGLT 868 (1072)
T ss_pred ccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh---------------hhcccc
Confidence 99984 45568888888875 55 58999999999999886443221100 000000
Q ss_pred cccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcc----------------cccceeeEEEEEEEec
Q 016314 226 MSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVD----------------DIREVRSKFLSSIRGE 289 (391)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~----------------~~~~~~~~~~~~~~~~ 289 (391)
..... .... .......+.+..++....|+.|+++++|.+...... .....+..+.|++. .
T Consensus 869 vP~p~--c~~~-haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~-~ 944 (1072)
T PTZ00357 869 VPPPG--CHDH-HAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVP-P 944 (1072)
T ss_pred cCCcc--cccc-chhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecC-C
Confidence 00000 0000 000112345666666666788999999988654421 11134567788888 9
Q ss_pred CceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecC---CccccCCCC---------EEEEEEEE
Q 016314 290 GTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFR---PSVRVSEGD---------DLNVSFSM 355 (391)
Q Consensus 290 ~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~---~p~~v~~g~---------~l~~~~~~ 355 (391)
++++|||++||++.|+++.. ...+.|||.|.+ ..+-+|++.+|||+ ++..++.|+ .|.+.+..
T Consensus 945 d~vlHGFAGYFdAvLYkDVt---~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~R 1021 (1072)
T PTZ00357 945 CGRCCGLAGYFSAVLYQSAT---APATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDR 1021 (1072)
T ss_pred CcceeeeeeEEEEEeecCCC---ccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeee
Confidence 99999999999999975310 012789999963 34679999999998 555566665 66666655
Q ss_pred EeCCCCCeeeEEEEEEEEeccc
Q 016314 356 TRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
..+.+.+| |||||.|.-.+
T Consensus 1022 r~~~~e~r---VwYew~v~~~~ 1040 (1072)
T PTZ00357 1022 RTSLAEQR---VWYEWSVTYGD 1040 (1072)
T ss_pred ccccccce---EEEEEEEeech
Confidence 55557888 99999986554
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=191.01 Aligned_cols=290 Identities=22% Similarity=0.225 Sum_probs=205.9
Q ss_pred HhhcCChHhHHHHHHHHHhcCCCCC-----C-CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC
Q 016314 54 KEMLSDRVRMDAYFNSIFQNKHHFQ-----G-KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ 126 (391)
Q Consensus 54 ~~~l~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~ 126 (391)
..||+|..|+.+|+..|+..+...+ + ..|||||+|||+|+++++++|+..|+|+|.- +|.+.|+++..+||+.
T Consensus 36 ~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 36 LDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred HHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 4799999999999999887765432 2 3689999999999999999999999999999 9999999999999999
Q ss_pred CcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchhhc
Q 016314 127 DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDY 204 (391)
Q Consensus 127 ~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~ 204 (391)
++|++|.....++... .+.|+++.+.+..-+..|+.++++-++..+++++|...+|..++.|++++++.++..
T Consensus 116 dkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~----- 190 (636)
T KOG1501|consen 116 DKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN----- 190 (636)
T ss_pred cceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh-----
Confidence 9999999998888654 469999998888888888899999999999999999999999999999999875442
Q ss_pred cccccchhhhhh-cCcccccccc------ccCCCcchhhhhhhhcccCceeec-CCCCccccceeEEEEEcCC-C-Cccc
Q 016314 205 EGALDDWYSFLK-ETKTYYGVDM------SVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCST-A-TVDD 274 (391)
Q Consensus 205 ~~~~~~w~~~~~-~~~~~~g~dl------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~p~~~~~~dl~~-~-~~~~ 274 (391)
|+.+.. ..+...|..+ +|+--+... + ....+.+ +.-++|+++..++.+||.. . ...+
T Consensus 191 ------~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~-----d--~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~ 257 (636)
T KOG1501|consen 191 ------LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ-----D--SQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSE 257 (636)
T ss_pred ------hhccccccccccCCcccCCCccccCCCchhHH-----H--HHHhhcchhhheeecCcceeEEeecchhhhcchh
Confidence 322211 1112222221 122110000 0 0111222 2236899999999999983 1 1112
Q ss_pred ccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCC--------CCccceEEecC--CccccC
Q 016314 275 IREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--------THWGQQVFLFR--PSVRVS 344 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~--------~hW~q~~~~l~--~p~~v~ 344 (391)
. +. .+..... .+|++..+..|||++|+. ...+.+..+|.+... .||.|++++++ +...+.
T Consensus 258 ~-~~--~r~~va~-~Sg~~~~~l~wwdi~mD~------~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~i~ 327 (636)
T KOG1501|consen 258 I-EE--LRPPVAV-HSGPLRSNLLWWDISMDQ------FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNRIH 327 (636)
T ss_pred h-hh--hcCcccc-cccchhheeeeeeeeecc------CcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCcee
Confidence 2 11 2233344 789999999999999976 356778888864432 49999998887 334444
Q ss_pred CCCEEEEEEEEEeCCCCCeeeEEEEEEEEeccc
Q 016314 345 EGDDLNVSFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 345 ~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
.+...-.-+.. +-+|.++..+.++.+.
T Consensus 328 ~~ss~~~v~~~------H~~l~i~~~~h~~~~~ 354 (636)
T KOG1501|consen 328 NVSSLMTVFSY------HLWLYIYRTDHYHCHL 354 (636)
T ss_pred eccceEEEeee------eeeeEEeeeeeecccc
Confidence 44332222221 2255666666666555
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=2.3e-18 Score=154.44 Aligned_cols=142 Identities=23% Similarity=0.294 Sum_probs=121.1
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHH
Q 016314 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDH 115 (391)
Q Consensus 38 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~ 115 (391)
.....+|+..+..|+..+.+..-.....|++++...+...+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence 44567888888888886544445556678888777766668999999999999999999987 55689999999 99999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 116 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++++...+..+ |+++++|+++++++ ++||+|.+ .+.+.+-.+.+.+|++++|+|||||+++..
T Consensus 91 a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 91 AREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred HHHHhhccCccc-eEEEEechhhCCCCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 999999988877 99999999999998 89999996 677777778999999999999999977643
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=9.7e-18 Score=151.91 Aligned_cols=144 Identities=25% Similarity=0.272 Sum_probs=82.8
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HH
Q 016314 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KM 112 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~ 112 (391)
+...-...|+..+..|+..+-+..-.....|++.+.+.....++.+|||+|||||.++..+++. + ..+|+++|+| .|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3444567888888888774333333445566666666666678899999999999999998876 3 2489999999 99
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.|+++++..+.. +|+++++|+++++++ ++||+|+| .+.+.+-.+....++++.|+|||||.+++.
T Consensus 85 L~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 85 LEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 99999999988776 599999999999987 89999997 455555556788999999999999998754
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=7.4e-17 Score=129.68 Aligned_cols=107 Identities=29% Similarity=0.358 Sum_probs=87.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEEEEcc-c
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEW-M 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~D~Ivs~~-~ 153 (391)
|+.+|||||||+|.+++.+++. ...+|+|+|+| .|++.|++++...+..++|+++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999993 34479999999 99999999998888888899999999 5555568899999966 2
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
...+........+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2212222456788999999999999998764
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=7.3e-16 Score=142.65 Aligned_cols=148 Identities=20% Similarity=0.122 Sum_probs=107.4
Q ss_pred cccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H
Q 016314 35 DKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K 111 (391)
Q Consensus 35 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~ 111 (391)
.-......+|+..+..|+...-.........|++.+.+.+...++.+|||+|||+|.++..+++. +. .+|+|+|+| +
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ 109 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE 109 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 33444567899999888863222111123445555555555567889999999999999988875 42 489999999 9
Q ss_pred HHHHHHHHHHH--cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 112 MSDHARTLVKA--NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 112 ~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.|+++... .....+++++++|+++++++ ++||+|++.. .+++-.+...+++++.|+|||||.+++...
T Consensus 110 ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 110 QLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999876532 22223599999999998877 6899999843 333334678899999999999999876543
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.65 E-value=4.3e-16 Score=137.47 Aligned_cols=106 Identities=27% Similarity=0.365 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++++|||+|||-|+|+..+|+.|+ .|+|+|++ ++++.|+..+.++++. |++.+..++++... ++||+|+| .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~c---m 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTC---M 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEE---h
Confidence 6889999999999999999999997 79999999 9999999999999987 88999999988665 89999999 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
..+.+-.+...++..+.+++||||.++++..+-.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 2233445677899999999999999998876633
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=5.7e-15 Score=139.64 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++.+|||||||+|.++..+++.|+ +|+|||.+ +|++.|++++...+...+++++++|++++..+ ++||+|+|.-
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-- 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-- 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh--
Confidence 3567999999999999999998887 79999999 99999998877766655699999999988655 7899999932
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.+-.+...++..+.++|||||.+++...
T Consensus 207 -vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 207 -VIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred -HHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 233334567899999999999999987744
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.62 E-value=8.5e-15 Score=133.33 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=108.2
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHH
Q 016314 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a 116 (391)
...+|+..+..|+...-.........|++.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 355777777777764333333345666677777776667899999999999999999876 3 3489999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++++..++. +++++++|+.+++++ ++||+|++.. .+.+......+++.+.++|+|||.+++.
T Consensus 87 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 87 RQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred HHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9998887774 599999999887765 7899999743 2333345678899999999999998754
No 14
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.61 E-value=5.9e-15 Score=128.39 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.+++...++.++||||||.|..++++|+.|. .|+|+|.| ..++.+++.++..+++ |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556788999999999999999999999 69999999 8999999999999987 99999999998888899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|..+..++..+ ..+.+++.+...++|||++++.
T Consensus 99 ~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEE
Confidence 997666666655 5788999999999999997763
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=7e-15 Score=130.46 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=89.1
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++++.+++.+ +++...|+.++.++++||+|+|.
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~ 102 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILST 102 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEe
Confidence 33445678999999999999999999987 79999999 99999999999888854 89999999887777889999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+.+++. ......++..+.++|+|||.++.
T Consensus 103 ~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 103 VVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cchhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 5433332 33578899999999999998653
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=1.3e-14 Score=126.61 Aligned_cols=101 Identities=28% Similarity=0.375 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..++.+|||+|||+|.+++.++..+ ..+|+|+|.| .|++.++++++++++.+ ++++++|+.++...++||+|+|+.+
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~ 118 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRAL 118 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhh
Confidence 3458899999999999999988764 3589999999 99999999999988865 9999999998755589999999641
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..++.+++.+.++|+|||.+++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 135567888899999999998653
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=5.9e-15 Score=130.73 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=87.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++. +++...|+....++++||+|
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEE
Confidence 33344445668999999999999999999987 79999999 9999999998888875 78888888766666789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++..+.+.+. ......+++.+.++|+|||++++
T Consensus 99 ~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 99 FSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEecccccCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 9965433332 23577889999999999998554
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.2e-14 Score=122.00 Aligned_cols=105 Identities=32% Similarity=0.430 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
++.+|||+|||+|.++..+++ . ...+|+|+|+| .|++.|+++++.+++. +++++++|+.+++ ++++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 568999999999999999994 3 24589999999 9999999999999998 5999999999976 447999999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+. .+......+++.+.++|+++|++++....
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 32 33345678899999999999999876554
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=4.1e-14 Score=123.80 Aligned_cols=100 Identities=30% Similarity=0.369 Sum_probs=85.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++. ...+|+++|.+ .|++.|+++++.+++++ ++++++|+.++...++||+|+++.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc--
Confidence 3789999999999999988874 44589999999 99999999999999876 9999999988766678999998542
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..++.++..+.++|+|||.+++...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2467789999999999999886643
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.9e-14 Score=134.84 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=88.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++. ++ +|+|||+| .|++.|+++++.+++.++++++++|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 46789999999999999999986 55 89999999 99999999999988877899999999998766 79999998332
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
. .+-.+...++.++.++|||||.+++..
T Consensus 196 ~---~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 G---EHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred h---hccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2 222346788999999999999988753
No 21
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=1e-13 Score=122.41 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=110.2
Q ss_pred hhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech
Q 016314 41 ANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT 110 (391)
Q Consensus 41 ~~y~~~~~~~~~~~~~l~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~------~~V~avD~s 110 (391)
..-|++++..|+. ++|... ...|.+.....+...++.+|||++||||-++..+.+. +. ++|+.+|+|
T Consensus 63 ~~vF~~vA~~YD~---mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din 139 (296)
T KOG1540|consen 63 HHVFESVAKKYDI---MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN 139 (296)
T ss_pred HHHHHHHHHHHHH---HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC
Confidence 3456666666655 555443 3457777777777788899999999999999988876 33 689999999
Q ss_pred -HHHHHHHHHHHHcCCCCc--EEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 111 -KMSDHARTLVKANNLQDV--VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+|+..+++++++.++... +.++.+|.++++++ ..||..++ .+.+-+-.+++..+++++|+|||||+|.
T Consensus 140 p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 140 PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999988888765 99999999999998 89999985 5555555668889999999999999876
No 22
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=2.3e-14 Score=133.35 Aligned_cols=109 Identities=32% Similarity=0.422 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
..-.+++.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+. ...+. ..
T Consensus 149 ~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~ 223 (295)
T PF06325_consen 149 RLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VE 223 (295)
T ss_dssp HHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CC
T ss_pred HHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-cc
Confidence 3334455555 35778999999999999999999999999999999 8999999999999999877663 22222 12
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|++|++... +..+...+.++|+|||.+|++
T Consensus 224 ~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 224 GKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp S-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred ccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 89999999886543 456778888999999999875
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.56 E-value=2.3e-14 Score=124.11 Aligned_cols=104 Identities=29% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.|+++++.|++.+ ++++..|..+...+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6689999999999999999998765 79999999 99999999999999988 999999987754458999999987522
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEc
Q 016314 156 FLLR--ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~--e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.... ...+..++....++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 2221 12467888889999999999864
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=3e-14 Score=110.39 Aligned_cols=93 Identities=29% Similarity=0.424 Sum_probs=75.7
Q ss_pred EEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCc
Q 016314 83 LDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE 160 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e 160 (391)
||+|||+|..+..+++.+..+|+++|++ ++++.++++....+ +.++++|+++++++ ++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999955589999999 99999998776543 67999999999887 899999995433333
Q ss_pred chHHHHHHHHhccccCCeEEEc
Q 016314 161 SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.....+++++.|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4688999999999999999874
No 25
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.9e-14 Score=131.40 Aligned_cols=109 Identities=31% Similarity=0.380 Sum_probs=86.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+++.+.. .++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++...++.-..+.......++||
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4444443 4789999999999999999999999999999999 889999999999998753333333333333336999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+||+|.+.. .+..+...+.++|||||++|.+-
T Consensus 232 vIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 232 VIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 999987543 35577888999999999999764
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=7.4e-14 Score=129.40 Aligned_cols=115 Identities=27% Similarity=0.322 Sum_probs=87.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+.+...+|.+|||||||.|.+++.+++. |+ +|+||.+| +..+.|++.++..|+.+++++...|.++++ .+||
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD 129 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFD 129 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCC
Confidence 4556667789999999999999999999998 87 79999999 999999999999999999999999999875 4899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.|+|-.+..... ....+.+++.+.++|+|||.++....+.
T Consensus 130 ~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 130 RIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 999943322222 2357889999999999999998765443
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=5.3e-14 Score=130.03 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=86.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.++..+++.|. +|+++|+| +|++.|++++...++.++++++++|+.++. .+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3567999999999999999999986 79999999 999999999999888777999999998864 2478999998543
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+ .....++..+.++|||||.+++.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2222 34567899999999999998754
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=1e-13 Score=131.95 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=88.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+...+...++++|||||||+|.++..+++.|+.+|+|+|+| .|+..++...+..+...++.++.+|+++++.+++||+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~ 192 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT 192 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence 445555557789999999999999999999998889999999 7876655444333333459999999999877789999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|..+ +.+..++..++..+++.|+|||.+++.
T Consensus 193 V~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999432 223345778899999999999999875
No 29
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=2e-14 Score=127.73 Aligned_cols=121 Identities=22% Similarity=0.330 Sum_probs=92.0
Q ss_pred ChHhHHHHHHHHHhcCCC-CC------CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc--
Q 016314 59 DRVRMDAYFNSIFQNKHH-FQ------GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-- 128 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~-~~------~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-- 128 (391)
+..|....++-+...... .+ |.+|||+|||+|+++..+|+.|+ .|+|||.+ +|++.|++..+.+...+.
T Consensus 63 n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~ 141 (282)
T KOG1270|consen 63 NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAI 141 (282)
T ss_pred cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhcccc
Confidence 455555555555544421 23 47899999999999999999998 79999999 999999999666554443
Q ss_pred ---EEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 129 ---VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 ---v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++.+.+++.+. ++||.|+| ...+.+-.++..++..+.++|||+|.+++...
T Consensus 142 ~y~l~~~~~~~E~~~--~~fDaVvc---sevleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 142 AYRLEYEDTDVEGLT--GKFDAVVC---SEVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ceeeehhhcchhhcc--cccceeee---HHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 777888877765 56999999 22344445788999999999999999886643
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.52 E-value=1.7e-13 Score=129.09 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.++...+...++++|||||||+|.++..++..|+.+|+|+|+| .|+..++...+..+...++.++..++.+++...+||
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD 190 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence 3455555667889999999999999999998888889999999 888765443332222345889999999887667899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|+|..+.++ -..+..++..+++.|+|||.+++..
T Consensus 191 ~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999543222 2456778999999999999998764
No 31
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.51 E-value=2e-14 Score=120.88 Aligned_cols=136 Identities=29% Similarity=0.403 Sum_probs=118.4
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016314 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 52 ~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
.|.++|.|..|...|..+|.+.. ...+.|+|+|+|++++.+|++ +++|+|||.+ ...++|.+++.-+|..+ ++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~e 83 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-WE 83 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-eE
Confidence 45677999999999999998864 368999999999999999998 7899999999 88999999988888765 99
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016314 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 131 ~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 195 (391)
++.+|.++..+ +..|+|+|+.+...+..|...+ ++.++..+|+.++.+||.....-+.|++..
T Consensus 84 vv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 84 VVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 99999999988 7899999999988888776544 566666799999999999998888888653
No 32
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.51 E-value=7.5e-14 Score=125.43 Aligned_cols=108 Identities=28% Similarity=0.413 Sum_probs=90.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Ivs~ 151 (391)
....+|||||||+|.+++++|++ ...+|++||++ .+++.|+++++.|+++++|+++++|+.++... .+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34689999999999999999998 54689999999 99999999999999999999999999987533 569999999
Q ss_pred cccccccCc----------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 152 WMGYFLLRE----------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e----------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+. |+-... ..++.+++...++|||||.+.+...
T Consensus 123 PP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 84 332221 2477888999999999999876543
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=1.5e-13 Score=125.65 Aligned_cols=116 Identities=30% Similarity=0.312 Sum_probs=97.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.++..+|.+|||||||-|.+++.+|+. |. +|+|+++| ++.+.+++.++..|++.+|+++..|.+++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--ccc
Confidence 45666678889999999999999999999998 56 79999999 999999999999999988999999999986 459
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
|-|||--|-.....+ ..+.++..++++|+|||.++....+.
T Consensus 139 DrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 139 DRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecC
Confidence 999994433333333 47889999999999999988665443
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.50 E-value=3.1e-13 Score=123.39 Aligned_cols=144 Identities=24% Similarity=0.266 Sum_probs=105.7
Q ss_pred ccccchhhhhhhhhhhhhH-hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-H
Q 016314 36 KEVDFANYFCTYAFLYHQK-EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-K 111 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~-~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~ 111 (391)
+..+...+|+.++..|+.. .... ......+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLS-FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHh-cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 3445577888887777641 1111 11223344444444444567899999999999999999886 3689999999 9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 112 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 112 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++.+++++..+++..+++++.+|+.+...+ ++||+|++. +.+.+-..+..++..+.++|+|||.+++.
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~---~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA---FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe---cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 9999999987766666799999999887654 789999973 33334445788899999999999998754
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=1.6e-13 Score=129.00 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|.| .+++.++++++.+++. +++...|+....++++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~--v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLN--IRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEechhcccccCCccEEEEcchhh
Confidence 4556999999999999999999987 79999999 9999999999988883 899999988776678999999976544
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++.. .....++..+.++|+|||++++
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEE
Confidence 4432 3577889999999999998654
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=5.2e-13 Score=123.15 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=84.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016314 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+++++++ ++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCc
Confidence 34444555444568999999999999999988876 79999999 99999887642 157889999988766 68
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+|... +.+..++..++.++.++|+|||.+++.
T Consensus 104 fD~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 104 FDLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 999998542 334446788999999999999999865
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=3.7e-13 Score=123.76 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=87.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++..++..++++++++|+.+++++ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 36789999999999999888772 23489999999 99999999999888877799999999987654 699999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+++.. .....+++.+.+.|||||.+++..
T Consensus 134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4444432 245788999999999999998764
No 38
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=3.3e-13 Score=109.21 Aligned_cols=104 Identities=34% Similarity=0.468 Sum_probs=84.8
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEEEEcccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~Ivs~~~~ 154 (391)
|.+|||+|||+|.+++.+++.+..+++++|++ ..++.|+.++..+++.++++++++|+.+.. + .++||+|++++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP- 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP- 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC-
Confidence 46899999999999999999985699999999 899999999999999888999999998875 3 389999999874
Q ss_pred ccccC------cchHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLLR------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.... ......+++.+.++|+|||.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 32211 123567889999999999998754
No 39
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=4.4e-13 Score=115.37 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=83.0
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.++...-.++||+|||.|.++..+|... .+++++|+| ..++.|+++... .+ .|++++.|+.+..++++||+||+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCCCCCeeEEEEe
Confidence 3444455789999999999999999885 489999999 899999988764 33 499999999998777999999886
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
-+.|++.....+..+++.+...|+|||.+|+..
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 668888766678889999999999999999864
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.44 E-value=2.4e-12 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=85.0
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCccc
Q 016314 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVD 146 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D 146 (391)
...+...++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.+++.+ ++++.+|.... ..+++||
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCC
Confidence 33344455789999999999999999987 34589999999 99999999999888764 89999887652 2237899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|++... ......+++.+.++|+|||.+++..+
T Consensus 91 ~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGS------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCc------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9998431 12346889999999999999987643
No 41
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.44 E-value=1.4e-12 Score=122.49 Aligned_cols=100 Identities=30% Similarity=0.425 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++++|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 4678999999999999999999988899999999 99999999999999987788887764332 24789999997642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..++..+.++|+|||.++++
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 23456788899999999999865
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=125.97 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=87.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcc
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+....+.+|||+|||+|.+++.+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.....+.+|
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~f 299 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 299 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCE
Confidence 4444444445699999999999999999874 3489999999 9999999999988754 2589999988654334689
Q ss_pred cEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+|++..+... .......++....++|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999987433221 1223567888899999999998766
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=3.3e-13 Score=106.46 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=74.9
Q ss_pred EEEECCcccHHHHHHHHcC---C-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc-c-c
Q 016314 82 VLDVGTGSGILAIWSAQAG---A-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE-W-M 153 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g---~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~-~-~ 153 (391)
|||+|||+|..+..+++.. . .+++++|+| +|++.+++.....+. +++++++|+.+++.. ++||+|+|. . +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998873 2 589999999 999999999988766 499999999997644 799999993 3 3
Q ss_pred cccccCcchHHHHHHHHhccccCCe
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
.+ .....+..+++.+.++|+|||
T Consensus 79 ~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC--CCHHHHHHHHHHHHHHhCCCC
Confidence 33 344568899999999999998
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=8.5e-13 Score=122.03 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=81.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. .++++++|+.++...++||+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~ 92 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDV 92 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceE
Confidence 3444555677899999999999999998872 2379999999 999988652 27899999988754479999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|..+.+++ .+...++..+.++|||||.+++.
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9995533332 35678899999999999998875
No 45
>PRK14967 putative methyltransferase; Provisional
Probab=99.43 E-value=2.1e-12 Score=116.89 Aligned_cols=105 Identities=30% Similarity=0.342 Sum_probs=84.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.++.+|+++|++ .+++.++++++.+++. ++++++|+.+....++||+|++++ .
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~np-P 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNP-P 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECC-C
Confidence 35678999999999999999998877689999999 9999999999888763 899999987753347899999986 2
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e-------------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|....+ ..+..+++.+.++|||||++++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 332211 12456788889999999998854
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.43 E-value=2.3e-12 Score=116.35 Aligned_cols=136 Identities=24% Similarity=0.233 Sum_probs=99.9
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHH
Q 016314 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHART 118 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~ 118 (391)
+.|+..+..|+..++.........+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .+++.+++
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~ 82 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKK 82 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHH
Confidence 456666666666543322222334555555555455788999999999999999988865 389999999 89898888
Q ss_pred HHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 119 LVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 119 ~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.. ...+++++.+|+.+...+ ++||+|++. +.+.+...+..+++.+.++|+|||.++..
T Consensus 83 ~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~---~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 83 KSE---LPLNIEFIQADAEALPFEDNSFDAVTIA---FGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred Hhc---cCCCceEEecchhcCCCCCCcEEEEEEe---eeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 765 334589999999887654 689999973 33344456778999999999999998864
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=1.5e-12 Score=113.80 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++++.++.. ++++.+|+.+.. +++||+|++++..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc-CCcccEEEECCCC
Confidence 34567899999999999999999887 89999999 9999999999988764 899999987654 4689999997632
Q ss_pred ccccC------------------cchHHHHHHHHhccccCCeEEEccc
Q 016314 155 YFLLR------------------ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~------------------e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+.... ...+..+++.+.++|+|||.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 21111 0124677888999999999987653
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=1.3e-12 Score=124.17 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=93.4
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016314 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+..+..|++ ++......+.+.+.+.+.... .++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++
T Consensus 79 ~y~~lA~~YD~--~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 79 FYRFLSIVYDH--IINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred EccceeeecCC--CeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh
Confidence 56666777776 122222233444433333222 35689999999999999888775 44589999999 999999887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... .+++++.+|+.+++++ +.||+|++... +.+..+...+++++.++|+|||.+++.
T Consensus 157 ~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~---L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 157 EPL----KECKIIEGDAEDLPFPTDYADRYVSAGS---IEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred hhc----cCCeEEeccHHhCCCCCCceeEEEEcCh---hhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 642 2388999999988765 68999998432 222224567899999999999998753
No 49
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=1.3e-12 Score=119.57 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|+++++..+...+++++++|+.+++++ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 36679999999999999988875 23479999999 99999999988776666699999999988764 689998854
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+++.. .....+++.+.+.|+|||.+++...
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 3333322 2457889999999999999987653
No 50
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=1e-12 Score=118.97 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=89.1
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016314 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
....|+..+..|+....+........|++.+.+.+. ..++.+|||||||||.++..+++....+|+|+|+| +|++.|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a 90 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN 90 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence 356788888888764322111112233333322211 12467999999999999999988732389999999 999998
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCe
Q 016314 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
++. ..++++|+++++++ ++||+|++.. .+.+-.+++.+++++.|+|||..
T Consensus 91 ~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 91 LVA---------DDKVVGSFEALPFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Hhc---------cceEEechhhCCCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 753 23568899988876 7999999843 34444567889999999999953
No 51
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.42 E-value=1.3e-12 Score=121.00 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=86.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|..+..+++....+|+++|+| .|++.|+++... .++++++.+|+.+.+++ ++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 33445567789999999999999988877522389999999 999999987654 24599999999887766 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.....+. .......+++.+.++|||||.+++...
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9983211111 112567899999999999999987543
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.41 E-value=3e-12 Score=119.82 Aligned_cols=107 Identities=26% Similarity=0.301 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.+++.++++++++|+.+...+++||+|+|++. |
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP-y 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP-Y 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC-C
Confidence 45789999999999999999863 3489999999 9999999999999988789999999865322358999999863 2
Q ss_pred ccc-----------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 156 FLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
... ++ .....++..+.++|+|||.+++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 11 1235678888899999999987654
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=3.5e-12 Score=113.84 Aligned_cols=109 Identities=28% Similarity=0.277 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
....+.+.+...++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 3444555555567789999999999999888875 2 3489999999 99999999999998877799999999774333
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+||+|++.... ..+...+.+.|+|||++++.
T Consensus 140 ~~~fD~Ii~~~~~---------~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAA---------STIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCc---------chhhHHHHHhcCcCcEEEEE
Confidence 689999985421 12234567889999998753
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=1.4e-12 Score=118.10 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=85.0
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
++|||||||+|.++..+++.. ..+|+++|+| .+++.|++++...++.++++++..|+.+.+.+++||+|++..+.+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~- 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH- 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh-
Confidence 479999999999999988863 3489999999 9999999999999998889999999976655688999998432222
Q ss_pred cCcchHHHHHHHHhccccCCeEEEccc
Q 016314 158 LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
......+++.+.++|+|||.+++..
T Consensus 80 --~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 --IKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2346789999999999999998654
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=5.9e-12 Score=110.80 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=84.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||+|||+|.+++.+++.+ ..+|+++|++ .+++.|+++++.+++.+ ++++.+|... .++++||+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~-~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI-ELPGKADA 100 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh-hcCcCCCE
Confidence 3344444577899999999999999998874 3589999999 99999999999888754 9999998753 34578999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++.... ..+..+++.+.++|+|||.++..
T Consensus 101 v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 101 IFIGGSG------GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred EEECCCc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 9984321 13567788889999999998864
No 56
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=2e-12 Score=119.80 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=83.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++..+++||
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD 95 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD 95 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence 3444445567789999999999999998876 34589999999 9999988764 23889999998876557999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|....+ +-.+...++..+.++|+|||.+++.
T Consensus 96 ~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999954322 2234678899999999999998875
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=5.1e-12 Score=112.26 Aligned_cols=107 Identities=23% Similarity=0.350 Sum_probs=86.2
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcc
Q 016314 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKV 145 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 145 (391)
...+...++.+|||+|||+|.+++.+++. + ..+|+++|.+ .+++.|+++++.+++.++++++.+|..+. ...++|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 34455678899999999999999998875 3 3589999999 99999999999998766799999998764 223689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|.|++.. ....+..+++.+.++|+|||.++..
T Consensus 113 D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 113 DRIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CEEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 9999742 1124677899999999999998854
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.39 E-value=3.4e-12 Score=119.14 Aligned_cols=105 Identities=32% Similarity=0.392 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
..++.+|||||||+|..++.+++. +. .+|+++|++ .|++.|+++....++. +++++.+|+++++++ +.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEc
Confidence 457899999999999988877765 54 379999999 9999999999888875 489999999988765 689999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.+. ......+++.+.++|||||.+++..
T Consensus 154 ~v~~~---~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINL---SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccC---CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 54332 2345678999999999999998754
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.39 E-value=3.8e-12 Score=117.17 Aligned_cols=94 Identities=39% Similarity=0.524 Sum_probs=77.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+.+.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-
Confidence 4678999999999999999998888789999999 99999999999998865555544432 79999996532
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..++..+.++|||||.+++.
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13456788899999999999875
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=4.8e-12 Score=113.90 Aligned_cols=106 Identities=24% Similarity=0.193 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CC
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ .+++.|+++++.+++.+ ++++++|..+... ..
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence 3454555567889999999999999999988742 369999999 99999999999999854 9999999976533 26
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|+++... ..+.+.+.+.|+|||+++..
T Consensus 146 ~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 89999975321 12334566789999998754
No 61
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=5.8e-12 Score=119.02 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=83.7
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
.+|||+|||+|.+++.+++.. ..+|+++|+| .+++.|+++++.+++.++++++++|+.+...+++||+|+|++. |..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP-yi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP-YVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC-CCC
Confidence 689999999999999998873 3489999999 9999999999999988789999999866332368999999862 211
Q ss_pred c-----------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 158 L-----------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 158 ~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
. ++ .....++..+.++|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 11 1235678888899999999987644
No 62
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=108.89 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=88.1
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE----ccc
Q 016314 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS----EWM 153 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs----~~~ 153 (391)
+|||||||.|.+...+++.|.. ..+|+|.| ++++.|+.+++++++++.|+|.+.|+.+.. ++++||+|+- +.+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 8999999999999999998764 49999999 999999999999999999999999998854 3489999985 222
Q ss_pred ccccc-CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 154 GYFLL-RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 154 ~~~l~-~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.-... ...-+..++..+.++|+|||++++..+++..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 11111 1122456788889999999999998887654
No 63
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=7.6e-12 Score=112.22 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|+++++..++.+ ++++++|......+ .
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCcCC
Confidence 34445555678899999999999999988876 32 489999999 99999999999988754 99999998765433 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|++... . ..+...+.+.|||||+++..
T Consensus 145 ~fD~I~~~~~---~------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAA---G------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCC---c------ccchHHHHHhhCCCcEEEEE
Confidence 8999998431 1 12233456689999998754
No 64
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.36 E-value=9.5e-12 Score=116.74 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016314 63 MDAYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 63 ~~~~~~~i~~~~-~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
++.+...+...+ ...+..+|||+|||+|.+++.+++... .+|+|+|+| .+++.|+++++.+++.++++++++|+.+.
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc
Confidence 445554443332 122236899999999999999998743 489999999 99999999999999877799999998764
Q ss_pred CCCCcccEEEEcccccccc-----------Cc------------chHHHHHHHHhccccCCeEEEccccee
Q 016314 140 VLPEKVDVIISEWMGYFLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
....+||+|+|++. |... ++ .....++..+.++|+|||.+++.....
T Consensus 178 ~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 178 LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 32248999999752 2211 11 134567788889999999998776543
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.36 E-value=5.9e-12 Score=112.13 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCC--CC-CcccEEEEc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIV--LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~-~~~D~Ivs~ 151 (391)
++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++++.+++. +++++++|+ ..+. ++ +.||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999998876 33479999999 9999999999988874 499999999 6654 43 789999985
Q ss_pred ccccccc--C---cchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLL--R---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~--~---e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....... + ......+++.+.++|+|||.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 3221110 0 012467899999999999999865
No 66
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.36 E-value=1.3e-11 Score=111.56 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=86.8
Q ss_pred HHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 66 YFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
+.+.+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+| .|+..|+++...++..+++++.++|+.++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 3344444433 35678999999999999999998876 79999999 999999999988877666999999998875
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|++..+-+... ...+..++..+.+++++++++.+.
T Consensus 118 ~~fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CCcCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7899999832222221 234667788888888877766543
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=7.4e-12 Score=126.11 Aligned_cols=107 Identities=24% Similarity=0.239 Sum_probs=84.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++.. +...+++++++|+.+.+++ ++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 3345678999999999999998888633379999999 99999988765 3344699999999888765 689999994
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ +.+-.+...++..+.++|||||.+++...
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 32 22223567899999999999999987643
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.34 E-value=7.9e-12 Score=125.92 Aligned_cols=108 Identities=19% Similarity=0.346 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEE
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs 150 (391)
..++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++....+. ++.++++|+.+++ ++ ++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998888775 34489999999 999999988766553 3889999998865 33 78999998
Q ss_pred cccccccc----------CcchHHHHHHHHhccccCCeEEEcccc
Q 016314 151 EWMGYFLL----------RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~----------~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+.+.+. ....+..+++++.++|||||.+++...
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65332211 123567889999999999999987543
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.34 E-value=1e-11 Score=113.72 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+...+...+|++|||||||.|..+..++++|++.|+|+|.+ ......+......+.+..+.++...+++++..+.||+
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDT 185 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCE
Confidence 455566678999999999999999999999999999999999 5444433333333333335555566777765689999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+| |+-+-+ ....-..|..++..|+|||.+|+.
T Consensus 186 VF~--MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 186 VFS--MGVLYH-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEE--eeehhc-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 999 443332 334556788899999999998855
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=1.1e-11 Score=118.55 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=84.5
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016314 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
...+......+|||+|||+|.++..+++.+. .+|+++|+| .+++.|+++++.+++. .+++..|+... .+++||+|
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fDlI 265 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFDMI 265 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCccEE
Confidence 3333333345899999999999999998743 489999999 9999999999999876 57778887653 35789999
Q ss_pred EEccccccccC--cchHHHHHHHHhccccCCeEEEcc
Q 016314 149 ISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~--e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|++.-+.... ......++..+.++|+|||.+++.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 99874322111 134678899999999999998764
No 71
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=9.4e-12 Score=121.24 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=89.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||+|||+|.+++.++..|+.+|+++|.| .+++.|+++++.|++. ++++++++|+.++. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3578999999999999998887788899999999 9999999999999986 46999999998752 135899999
Q ss_pred EccccccccCcc-------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 150 SEWMGYFLLRES-------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+++.. +..... ....++....++|+|||.++.+.++...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 99853 332221 2344555677999999999987665443
No 72
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.32 E-value=7.9e-12 Score=107.12 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=80.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCC-CC-CcccEEEEccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIV-LP-EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~-~~~D~Ivs~~~~~ 155 (391)
..||++|||||..-.+.--....+|+++|++ .|-+.|.+.++++...+ ++ |++++.++++ ++ .++|+||+- .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~T---l 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCT---L 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEE---E
Confidence 4689999999987655543333489999999 99999999998885544 65 9999999987 44 899999994 4
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++...+....|+++.|+|+|||++++-
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4555567788899999999999998864
No 73
>PRK08317 hypothetical protein; Provisional
Probab=99.32 E-value=2.7e-11 Score=110.44 Aligned_cols=117 Identities=23% Similarity=0.274 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
..+++.+.+.+...++.+|||+|||+|.++..+++.. ..+|+++|.+ .+++.|+++... ...+++++..|+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC
Confidence 3445555566666778999999999999999988863 3589999999 899999887332 2345899999998876
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++ ++||+|++..+ +.+..+...+++.+.++|+|||.+++...
T Consensus 83 ~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 55 78999998433 22223567889999999999999887653
No 74
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.31 E-value=4.7e-13 Score=105.11 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=59.8
Q ss_pred EEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEEccccccc
Q 016314 83 LDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~Ivs~~~~~~l 157 (391)
||||||+|.++..+++. ...+++++|+| .|++.|+++.......+ ...+..+..+ ...+++||+|++..+-+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888887 33489999999 99988888888876543 3344433333 2223699999984433333
Q ss_pred cCcchHHHHHHHHhccccCCeEE
Q 016314 158 LRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
.++..+++.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999975
No 75
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=2.6e-11 Score=107.06 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=80.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.+++.++..++.+|+++|.+ .+++.|+++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4568999999999999997766677799999999 9999999999999876 4999999987642 1257999999985
Q ss_pred cccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016314 154 GYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
|. .+....+++.+. .+|+|+++++++..
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223344455443 45889998886644
No 76
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.31 E-value=6.2e-12 Score=107.41 Aligned_cols=107 Identities=25% Similarity=0.262 Sum_probs=75.8
Q ss_pred HHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-C
Q 016314 65 AYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-L 141 (391)
Q Consensus 65 ~~~~~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~ 141 (391)
.+.+.+.+... ..++.+|||||||+|.++..+++.|. +|+++|++ .+++. . . +.....+..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----~-~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----N-VVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----T-SEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----h-hhhhhhhhhhhhcc
Confidence 33444444433 46778999999999999999999988 89999999 77766 1 1 233332222322 2
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++||+|+|..+ +.+-.++..+++.+.++|||||.+++....
T Consensus 76 ~~~fD~i~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDV---LEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESS---GGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHH---HhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 389999999433 333336889999999999999999876443
No 77
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=2e-11 Score=116.98 Aligned_cols=115 Identities=24% Similarity=0.276 Sum_probs=91.9
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
...++.......++.+|||+|||+|.+++.++..++ +|+|+|++ .|+..|+++++.+++.+ +.++++|+.+++.+ +
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444444456788999999999999998888776 79999999 99999999999999887 89999999998765 7
Q ss_pred cccEEEEcccccccc----Cc---chHHHHHHHHhccccCCeEEEcc
Q 016314 144 KVDVIISEWMGYFLL----RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~----~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|++++. |... .+ .....+++.+.++|+|||.++..
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 8999999863 2211 11 22577889999999999987754
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=2.3e-11 Score=117.45 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=91.3
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016314 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+.....++.+.+.+...+. ++.+|||+|||+|.+++.+++. ...+|+|+|+| .|++.|+++++.++. +++++++
T Consensus 232 LIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred cCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 3344456666666655432 4569999999999999988875 44589999999 999999999998875 4999999
Q ss_pred ccccCCC--CCcccEEEEccccccccCc-----------------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 135 SVEDIVL--PEKVDVIISEWMGYFLLRE-----------------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~--~~~~D~Ivs~~~~~~l~~e-----------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+.+... .++||+|+|++. |....+ .....+++.+.++|+|||.+++...
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred chhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9876433 358999999873 322111 1234666777889999999876544
No 79
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.31 E-value=4e-11 Score=102.52 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
..+......+...++.+++|||||||.+++.++..+ ..+|+|+|.+ ++++..++|+++.+.++ ++++.++.-+.-..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcC
Confidence 334445566777899999999999999999999764 4489999999 99999999999999765 99999999876333
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.++|.|+. +-. ..++.+++.+...|||||+++....+
T Consensus 100 ~~~~daiFI---GGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 100 LPSPDAIFI---GGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CCCCCEEEE---CCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 37999985 222 34678899999999999999976554
No 80
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.30 E-value=4.4e-11 Score=108.25 Aligned_cols=135 Identities=28% Similarity=0.340 Sum_probs=98.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016314 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
+++.+..++....+ +..+.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .+++.+++++.
T Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 12 WWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 44444444443322 4556555555555432234578999999999999999988876 69999999 89999999888
Q ss_pred HcCCCCcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 122 ANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.++.. ++++...|+.++... ++||+|++.. .+.+......+++.+.++|+|||.+++..
T Consensus 89 ~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 89 KDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 77653 388999998876543 7899999843 23333456788999999999999987643
No 81
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.6e-11 Score=111.35 Aligned_cols=115 Identities=27% Similarity=0.317 Sum_probs=88.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016314 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
-+.+.+.+....+.+|||+|||.|.+++.+++.. ..+|+-+|.| .+++.|+++++.|++++. .++..|..+-- .++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-ccc
Confidence 3456666666666699999999999999999985 4589999999 899999999999999864 67777765533 359
Q ss_pred ccEEEEccccccccCc--chHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e--~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|||++.-+-.... .....++....+.|++||.+.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 9999999843322111 12347888899999999987654
No 82
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.30 E-value=3.8e-11 Score=109.42 Aligned_cols=111 Identities=29% Similarity=0.386 Sum_probs=87.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 144 (391)
+.+.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+.. ++++..++.++. .+++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcCCC
Confidence 3454444456788999999999999999998876 69999999 8999999888777663 788888888764 3378
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++.. .+.+......++..+.++|+|||.+++..
T Consensus 115 fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCME---MLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhh---HhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999843 23333456788999999999999988653
No 83
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.30 E-value=1.2e-11 Score=129.36 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=88.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC--CCCcccEEEEccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999999999999889999999 9999999999999997 57999999987642 2468999999874
Q ss_pred cccccC---------cchHHHHHHHHhccccCCeEEEcccc
Q 016314 154 GYFLLR---------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~---------e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++... ......++..+.++|+|||.++++.+
T Consensus 618 -~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 -TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32221 12345677778899999999887644
No 84
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=2.7e-11 Score=108.45 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 141 (391)
.++.+|||+|||.|..+.++|++|. +|+|+|+| .+++.+.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3567999999999999999999999 69999999 888865432 221 2348999999998764
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ++||.|+.......+ .......+++.+.++|||||.+++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2 679999874322222 3345677899999999999976543
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.28 E-value=2.9e-11 Score=117.73 Aligned_cols=108 Identities=26% Similarity=0.293 Sum_probs=84.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+.+...++.+|||||||+|.++..+++. |. +|+|+|+| ++++.|+++++ ++. +++...|..++ +++||
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l--~~~fD 230 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL--NGQFD 230 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc--CCCCC
Confidence 3444455667899999999999999999886 55 89999999 99999998874 332 88888898776 47899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.|+|..+..... ...+..+++.+.++|||||.+++..
T Consensus 231 ~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999854322221 2346788999999999999988753
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=4.1e-11 Score=105.24 Aligned_cols=105 Identities=34% Similarity=0.465 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
.++++|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++..+++.++ +.++++|+.+...+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p- 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP- 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC-
Confidence 4678999999999999999998864 89999999 999999999998888654 8899999877443468999998653
Q ss_pred cccc-------------------CcchHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLL-------------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~-------------------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... ....+..++..+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2110 0112566788999999999988754
No 87
>PRK04266 fibrillarin; Provisional
Probab=99.28 E-value=4.9e-11 Score=107.59 Aligned_cols=103 Identities=22% Similarity=0.211 Sum_probs=78.6
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCccc
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVD 146 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D 146 (391)
.+...++.+|||+|||+|.++..+++. +..+|+|+|.+ .|++.+.++++.. .+|.++.+|+.+. .++++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 355668899999999999999999987 33479999999 8999887776643 3389999998752 2346799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+++... ......++..+.++|||||.+++.
T Consensus 144 ~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99985321 112234678899999999998875
No 88
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.28 E-value=2.4e-11 Score=122.33 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=82.9
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|+++++.+++.++++++++|+.+....++||+|+|++. |.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPP-Yi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPP-YI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCC-CC
Confidence 468999999999999988765 44589999999 9999999999999988789999999865332368999999762 22
Q ss_pred ccC------------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 157 LLR------------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
... | .....++..+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 211 1 1234567778899999999987644
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=8.9e-11 Score=104.12 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=84.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCC
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~ 143 (391)
..+...+...++.+|||+|||+|.++..+++. ...+|+++|.+ .+++.|+++++.+++.+ ++++.+|+.+. . ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhCCC
Confidence 34455555567789999999999999998875 33589999999 99999999999988854 99999998652 1 223
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+|.++.+. ...+..+++.+.++|+|||.++....
T Consensus 109 ~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 467766532 12456788999999999999887643
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.27 E-value=6.3e-11 Score=106.40 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|+++++..++.+ ++++++|..+...+ ++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCc
Confidence 3444555566789999999999999998888754 89999999 99999999999988866 99999998654223 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|++... ...+.+.+.+.|+|||.++..
T Consensus 146 D~I~~~~~---------~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAA---------APEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CEEEEccC---------chhhhHHHHHhcCCCcEEEEE
Confidence 99998431 122344567889999998754
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.9e-11 Score=111.12 Aligned_cols=122 Identities=26% Similarity=0.342 Sum_probs=88.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..++.+.+.+......... +|||||||||.+++.++..+. ..|+|+|+| .+++.|++++..+++ .++.++++|..+
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~ 171 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE 171 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc
Confidence 3455555554422222222 799999999999999999864 389999999 999999999999998 556777776554
Q ss_pred CCCCCcccEEEEccccccccC-----------c------------chHHHHHHHHhccccCCeEEEcccce
Q 016314 139 IVLPEKVDVIISEWMGYFLLR-----------E------------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 139 ~~~~~~~D~Ivs~~~~~~l~~-----------e------------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
- ..++||+||||+ .|.... | .....++....++|+|||.+++....
T Consensus 172 ~-~~~~fDlIVsNP-PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 172 P-LRGKFDLIVSNP-PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred c-cCCceeEEEeCC-CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 2 235999999987 343322 1 13456677788999999988876553
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.26 E-value=7.2e-11 Score=112.13 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=89.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.+.+.....++.+|||||||+|.++..+++.. ..+++++|...+++.++++++..++.++|+++.+|+.+..++ .+|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCC
Confidence 344444545566899999999999999999874 347999998788999999999999988999999999875554 479
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|++..+.+.. .+.....+++.+.+.|+|||++++...
T Consensus 218 ~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98753222222 222346789999999999999987653
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=99.26 E-value=9.5e-11 Score=108.61 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHH-HHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016314 78 QGKTVLDVGTGSGIL-AIWSA-QA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~l-s~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
++++|+|||||.|.+ ++.++ ++ ...+++++|.+ ++++.|++.++. .++.++|+|..+|+.+.... ++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998754 34444 33 34479999999 999999999964 88888999999999886433 789999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.++- ......+++.+.+.|+|||.++...+
T Consensus 203 ALi~~d--k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 ALVGMD--KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccc--cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 432221 13568899999999999999997753
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=3.5e-11 Score=121.26 Aligned_cols=113 Identities=21% Similarity=0.381 Sum_probs=86.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-C
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++. ++...+++++++|+.. ++++ +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 3444555555678999999999999999998854 89999999 899876553 2223458999999964 3444 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|+|..+.+++.. ..+..+++.+.++|||||++++...
T Consensus 103 ~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8999999765444433 2467889999999999999987654
No 95
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-10 Score=99.11 Aligned_cols=76 Identities=38% Similarity=0.501 Sum_probs=67.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
......+++|+|+|||||.|++.++-.|+++|+|+|++ ++++.+++++.+ +...|+++.+|+.++. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 44567889999999999999999999999999999999 999999999998 3345999999999986 569999998
Q ss_pred c
Q 016314 152 W 152 (391)
Q Consensus 152 ~ 152 (391)
+
T Consensus 116 P 116 (198)
T COG2263 116 P 116 (198)
T ss_pred C
Confidence 6
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=4.7e-11 Score=105.69 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~Ivs~ 151 (391)
...+|||||||+|.++..+++.. ..+|+|+|++ .+++.|++++...++. +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 45689999999999999888873 3479999999 9999999999988886 4999999998653 33 589999985
Q ss_pred cccccccC-----cchHHHHHHHHhccccCCeEEEccc
Q 016314 152 WMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~-----e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
........ .-....++..+.++|||||.+++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 42211110 0112568899999999999987653
No 97
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=2.3e-11 Score=114.86 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCCCcccEEEEc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++++..+. ...+++...|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3578999999999999999999886 79999999 999999998876421 12478988998765 4789999984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+..++..+ ....++..+.+ +.++|.++
T Consensus 220 ~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 322222222 23455666654 45666655
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=109.36 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=88.8
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|++++. +....+++++.+|+.+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE 169 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence 3445556655544444567899999999999999999874 4589999999 99999999987 3344569999999865
Q ss_pred CCCCCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcc
Q 016314 139 IVLPEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~~~~D~Ivs~~~~~~l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+++||+|++++. |.... + .....++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 433478999999763 22110 0 12356677778999999998874
No 99
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=6.2e-11 Score=107.83 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~D 146 (391)
.+.++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++++++.++|+++.+|+.+.- ..++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 46789999999999988887765 35589999999 999999999999999989999999997741 126899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|+.+.- ......++..+.++|+|||+++....-+
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9998642 1234567888889999999988765443
No 100
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1e-10 Score=104.40 Aligned_cols=109 Identities=28% Similarity=0.297 Sum_probs=95.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.|.......++.+|||.|+|+|.++..+|++ | ..+|+..|+. +.++.|++|++..++.++|++..+|+.+...++.|
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v 164 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV 164 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence 4666677889999999999999999999986 4 3689999999 99999999999999999999999999998877899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|.|+.+.. +...+++.+...|+|||.+++..+
T Consensus 165 Dav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 165 DAVFLDLP--------DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred CEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 99998653 456788899999999998875444
No 101
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.1e-10 Score=102.72 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=82.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--C-CcccEEEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--P-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~--~-~~~D~Ivs 150 (391)
.++.+|||++||+|.+++.++.+|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . + . ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999899999999 99999999999999887799999999553 1 1 1 24788888
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEcccce
Q 016314 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~~~ 186 (391)
++. |.. .....++..+ ..+|+++|+++.....
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 773 322 1233334433 4689999988876543
No 102
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.23 E-value=7.6e-11 Score=107.51 Aligned_cols=99 Identities=27% Similarity=0.365 Sum_probs=79.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+|+++|++ .++..+++... .++.++.+|+.+.+++ ++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 3457899999999999999998753 468999999 88888877654 2488999999988755 78999998543
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+..+...++..+.++|+|||.+++.
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 333345778999999999999998865
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=2.9e-11 Score=111.98 Aligned_cols=128 Identities=18% Similarity=0.261 Sum_probs=87.4
Q ss_pred cCChHhHHHHHHHHHhc----CCCCCCCEEEEECCcccH----HHHHHHHcCC------CeEEEEech-HHHHHHHHHHH
Q 016314 57 LSDRVRMDAYFNSIFQN----KHHFQGKTVLDVGTGSGI----LAIWSAQAGA------RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~----~~~~~~~~VLDlGcG~G~----ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~~ 121 (391)
..|....+.+.+.+... ....++.+|||+|||+|. +++.+++.+. .+|+|+|+| .|++.|++.+.
T Consensus 74 fR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y 153 (264)
T smart00138 74 FRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIY 153 (264)
T ss_pred cCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCC
Confidence 44454555555443321 112345799999999995 6777776522 379999999 99999987531
Q ss_pred H----cC----------------------CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccc
Q 016314 122 A----NN----------------------LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWL 174 (391)
Q Consensus 122 ~----~~----------------------~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L 174 (391)
. .+ +.++|+|.+.|+.+.+++ ++||+|+|..+..++. ......++..+.+.|
T Consensus 154 ~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 154 PERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred CHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 0 01 224589999999987664 8999999944322222 234668999999999
Q ss_pred cCCeEEEcccc
Q 016314 175 KPTGVMYPSHA 185 (391)
Q Consensus 175 kpgG~~i~~~~ 185 (391)
+|||.+++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999987543
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.21 E-value=1.5e-10 Score=106.44 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 62 RMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
.++.+.+.+...+.. ....+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555554443322 23458999999999999998875 33489999999 99999999998876 4788899876
Q ss_pred CC---CCCcccEEEEcccccccc------------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 139 IV---LPEKVDVIISEWMGYFLL------------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~---~~~~~D~Ivs~~~~~~l~------------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.. ..++||+|++++. |... ++ ..+..++....++|+|||.+++...
T Consensus 145 ~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 1357999999873 3211 00 1245777788899999999886643
No 105
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.21 E-value=3.7e-11 Score=103.83 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=87.9
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016314 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
..+.......|.|||||+|..+..++++ +...|+|+|.| +|++.|++..- + ++|..+|+.++..+.+.|+|+
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~-~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D-ATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C-CceecccHhhcCCCCccchhh
Confidence 3445556688999999999999999987 44589999999 99998866532 2 899999999999889999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEee
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAP 191 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~ 191 (391)
++.....+. +-..++..+...|.|||.+-.........|
T Consensus 98 aNAvlqWlp---dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 98 ANAVLQWLP---DHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhhhhhhcc---ccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 976544443 345678888889999999887766655543
No 106
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.21 E-value=2.1e-10 Score=105.57 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
+.+...+...+. ..+.+|||+|||+|.++..+++. ...+|+++|++ .+++.|++++..+++. +++++++|+.+...
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc
Confidence 344444444332 24568999999999999999987 33489999999 9999999999998886 49999999977433
Q ss_pred CCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcc
Q 016314 142 PEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++||+|++++. +.... + .....+++.+.++|+|||.+++.
T Consensus 152 ~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 478999999763 22110 0 01236678889999999998864
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=99.19 E-value=1e-10 Score=104.44 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.+.+|||+|||+|.+++.+++. ...+|+|+|++ .+++.|+++.. .+.++++|+....+.++||+|||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999988874 23489999999 89999997652 2789999998766667999999988
Q ss_pred ccccccCc---------chHHHHHHHHhccccCCeEEEcccce
Q 016314 153 MGYFLLRE---------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~l~~e---------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.-.-.... .....++....+++++|+.|+|...-
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 42211111 12455777777888999988877543
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=1.4e-10 Score=107.27 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~Ivs~~~ 153 (391)
++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+..++++++.+|..++ ..+++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4678999999999999988776 44589999999 99999999887665556799999998764 23468999998754
Q ss_pred ccc-ccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYF-LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~-l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... ....-....+++.+.+.|+|||++++.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 111112367899999999999999874
No 109
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.3e-10 Score=114.06 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=89.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ |+++++|+.++..+++||+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEE
Confidence 344567889999999999999888875 23489999999 99999999999999864 999999998876457899999
Q ss_pred Ecccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016314 150 SEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...... ... ....++..+.++|+|||+++...+++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 875322110 001 123578889999999999998777654
No 110
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=112.26 Aligned_cols=113 Identities=25% Similarity=0.285 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
.+|++|||+-|-||.+++.+|..||++|+.||+| ..++.|+++++.|++. .++.++++|+.++- -.++||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4589999999999999999999999999999999 9999999999999985 45899999997752 225999999
Q ss_pred EccccccccC------cchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 150 SEWMGYFLLR------ESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.++..+.-.. ..+...++..+.++|+|||+++.+.+....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 9985443221 124566777788999999999988776544
No 111
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=1.5e-10 Score=104.03 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 141 (391)
.++.+|||+|||.|..++.+|+.|. +|+|||+| .+++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567999999999999999999999 69999999 77776532 2332 2458999999998854
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. ..||+|+...+...+ .......++..+.++|+|||+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 579999974432333 33456788999999999998644
No 112
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=1.9e-10 Score=106.67 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=87.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016314 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+++.+ |++++.|...+... ++||.|++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEE
Confidence 4467889999999999999988875 2 3489999999 99999999999999865 99999998876433 67999999
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016314 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 ~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
++..+... .+. ....++....++|||||+++.+.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 76433210 011 123578888899999999986666543
No 113
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.9e-10 Score=100.59 Aligned_cols=104 Identities=24% Similarity=0.288 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.+.+.+...++.+|||||||+|..+..+|+... +|+.+|.. +..+.|+++.+..|+.| |.++++|-..-..+ .+||
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence 455566678899999999999999999999855 89999999 99999999999999987 99999998764333 8999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.|+...-. ...++.++ ..|++||+++.-
T Consensus 141 ~I~Vtaaa-----~~vP~~Ll----~QL~~gGrlv~P 168 (209)
T COG2518 141 RIIVTAAA-----PEVPEALL----DQLKPGGRLVIP 168 (209)
T ss_pred EEEEeecc-----CCCCHHHH----HhcccCCEEEEE
Confidence 99874311 11234444 458999998744
No 114
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.17 E-value=2.2e-10 Score=106.15 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC----CCCCcccEEEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI----VLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~D~Ivs 150 (391)
.++++|||+-|-||.+++.++..||++|+.||.| .+++.|+++++.|+++ ++++++..|+.+. .-.++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3678999999999999999999999999999999 9999999999999986 5799999998763 12369999999
Q ss_pred ccccccccC---cchHHHHHHHHhccccCCeEEEccccee
Q 016314 151 EWMGYFLLR---ESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 151 ~~~~~~l~~---e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++..+.-.. +.+...++..+.++|+|||.++.+.++.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 986443221 1245567777889999999988776543
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.17 E-value=5.7e-10 Score=103.05 Aligned_cols=113 Identities=22% Similarity=0.186 Sum_probs=79.9
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016314 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
...+..+|..- +...++.+|||||||+|.++..+++. + ..+|+|||++ .|.+.+.+.++.. .+|.++.+|+
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34555566432 34567889999999999999999987 3 3489999999 7665555544332 2388899998
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +.+.+|+|+++.. .. .....++..+.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva----~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA----QP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC----Cc-chHHHHHHHHHHhccCCCEEEEE
Confidence 6531 2368999999763 11 23445566788999999999873
No 116
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=5.1e-10 Score=101.70 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+++|+| .|++.|+++....+..+++.+..+|+... .++||+|++..+.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhh
Confidence 4678999999999999999999887 69999999 99999999998888766799999995432 37899999843221
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.. ....+..+++.+.+++++++++.
T Consensus 139 ~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 11 22346677888877765555443
No 117
>PRK06202 hypothetical protein; Provisional
Probab=99.17 E-value=2.4e-10 Score=104.14 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
+...+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| .|++.|+++...++ +++...+...+
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc
Confidence 3333333333346689999999999998887753 32 379999999 99999988765443 55555555555
Q ss_pred CCC-CcccEEEEccccccccCcchHHHHHHHHhcccc
Q 016314 140 VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 140 ~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lk 175 (391)
..+ ++||+|+|..+-+.+.. ..+..+++++.++++
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d-~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDD-AEVVRLLADSAALAR 159 (232)
T ss_pred cccCCCccEEEECCeeecCCh-HHHHHHHHHHHHhcC
Confidence 443 79999999654333322 235678999999887
No 118
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=2.9e-10 Score=112.71 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=88.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccE
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++.+. .+|+|+|.+ .+++.++++++.+++. ++++++|+.++. . +++||.
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCE
Confidence 34456789999999999999999988743 489999999 9999999999999875 789999998753 2 367999
Q ss_pred EEEcccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 148 IISEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|++++...... ... ....++..+.++|||||.++...+++..
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99876422110 011 1246788889999999999977765543
No 119
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=2.8e-10 Score=113.43 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=88.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccE
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ |+++++|+.++. ++++||+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCE
Confidence 344467789999999999999998886 34589999999 99999999999999876 999999998763 3378999
Q ss_pred EEEcccccccc------------Ccch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016314 148 IISEWMGYFLL------------RESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~l~------------~e~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|++++..+... .+.. ...++..+.++|||||.++.+.+++.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 99976422110 0011 23578888999999999986655544
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.16 E-value=2.4e-10 Score=101.74 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.++..+++. +..+++|+|+| .|++.|+++.. .++++++|+.+ +++ ++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 35678999999999999998886 44589999999 99999987532 26788899887 443 79999999654
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+++. ...+..+++++.++++ +.+++
T Consensus 115 L~hl~-p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 115 LIHIN-PDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred hhhCC-HHHHHHHHHHHHhhcC--cEEEE
Confidence 44443 2356788888888873 34443
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=3.2e-10 Score=112.19 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.++.+ ++++++|..++. ..++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 34567889999999999999988876 24589999999 99999999999999865 899999998764 24789999
Q ss_pred EEccccccccC---c----------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016314 149 ISEWMGYFLLR---E----------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~---e----------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...+.... . .....++....++|||||.++.+.+++.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99764322211 0 0124568888899999999998877744
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.16 E-value=3.1e-10 Score=101.47 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C-CCc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-PEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~-~~~ 144 (391)
..++.+|||||||+|.++..+++.. . .+|+|||+++|. .+.+ ++++++|+.+.. + +++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCCC
Confidence 3567899999999999999888873 2 489999999631 2233 899999998853 3 378
Q ss_pred ccEEEEccccccccCc--c------hHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFLLRE--S------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e--~------~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+|+...+..... . ....+++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999997643332211 0 1246788999999999998863
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.15 E-value=5.4e-10 Score=105.82 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
.+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.+++.+ +.++++|..+...+ .+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCC
Confidence 344444556778999999999999999988632 369999999 99999999999998854 89999998765433 67
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
||+|++.. . ...+...+.+.|+|||.++.
T Consensus 150 fD~Ii~~~---g------~~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 150 YDVIFVTV---G------VDEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ccEEEECC---c------hHHhHHHHHHhcCCCCEEEE
Confidence 99999742 1 11223345678999998765
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=3.6e-10 Score=112.24 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=89.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----C-CCcc
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----L-PEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~ 145 (391)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ |+++++|..++. . .++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44567899999999999999988876 2 3489999999 99999999999999976 999999998764 2 3689
Q ss_pred cEEEEcccccccc----Cc--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016314 146 DVIISEWMGYFLL----RE--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 146 D~Ivs~~~~~~l~----~e--------~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|.|+++...+... .. . ....++..+.++|||||+++...++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999876432211 00 0 135778888999999999997776654
No 125
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.15 E-value=3.1e-10 Score=105.85 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+..+|||+|||+|.++..+++.. ..+|+|+|+| .|++.|+++. ..+.++++|+.+++++ ++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 45789999999999998887652 1269999999 9999887642 2388999999988776 789999983
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. +..+.++.|+|||||.++..
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEEEE
Confidence 21 12356788999999999853
No 126
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.15 E-value=4.7e-10 Score=107.81 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEE
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs 150 (391)
...+..+||||||+|.++..+|+.. ...++|+|++ .++..|.+++..+++.+ +.++++|+..+ .++ +.+|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEE
Confidence 3456799999999999999999873 3479999999 99999999999999976 99999999764 233 78999997
Q ss_pred ccccccccCc---chHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.......-.. -....++..+.|+|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4322111000 01367899999999999998764
No 127
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.14 E-value=2e-10 Score=100.28 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=79.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++.+|||+-||||.+++.++.+||++|+.||.+ ..+...+++++..+..++++++..|....- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 999999999999998888999999965431 2479999999
Q ss_pred ccccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016314 151 EWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
++. |.... ....++..+. .+|+++|.++....
T Consensus 121 DPP-Y~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP-YAKGL--YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S-TTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC-cccch--HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 873 33221 1245555554 89999999887643
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=5.1e-10 Score=96.84 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=77.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
+.+.+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.+++++.. .++++++++|+.++.++ .++|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 4444455667899999999999999999985 489999999 899999988754 23599999999998766 46999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++++. |... ...+..++.. ..+.++|.+++.
T Consensus 81 vi~n~P-y~~~-~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLP-YNIS-TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEECCC-cccH-HHHHHHHHhc--CCCcceEEEEEE
Confidence 999863 3321 2233444332 224577777655
No 129
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.13 E-value=5.4e-10 Score=106.42 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 142 (391)
+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|.+ .+++.|+++++.+++. +++++++|+.++.. .
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcC
Confidence 333334443334578999999999999999999875 89999999 9999999999999984 59999999987642 2
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++||+|++++.-.. ....+++.+.+ ++|+++++.+...
T Consensus 239 ~~~D~Vv~dPPr~G-----~~~~~~~~l~~-~~~~~ivyvsc~p 276 (315)
T PRK03522 239 EVPDLVLVNPPRRG-----IGKELCDYLSQ-MAPRFILYSSCNA 276 (315)
T ss_pred CCCeEEEECCCCCC-----ccHHHHHHHHH-cCCCeEEEEECCc
Confidence 57999999875222 22233333333 5677766655443
No 130
>PRK00811 spermidine synthase; Provisional
Probab=99.13 E-value=5.1e-10 Score=104.79 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C--CCcEEEEEcccccCC--CCCcccEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L--QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
++++||+||||+|.++..+++. +..+|++||++ .+++.|++.....+ . .++++++.+|...+. ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 67789999999 99999999876432 2 456999999987753 237899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016314 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++.......... ....+++.+++.|+|||+++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 976433221111 135678889999999999886544
No 131
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.13 E-value=5.9e-10 Score=105.44 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 140 (391)
.+...|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++......-+|.++++|+.+ +.
T Consensus 52 ~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 52 RHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 3334444443 256789999999999999988874 2479999999 9999998887653322237889999987 34
Q ss_pred CCCcc---cE--EEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 141 LPEKV---DV--IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~---D~--Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++..+ +. +++....+.+ .......+++.+.+.|+|||.+++....
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhcccccCCeEEEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 44333 33 3332212222 2334678899999999999999875443
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.12 E-value=3.3e-10 Score=100.79 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=76.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016314 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||||||+|.++..+++. |.. +|++||.. .+++.|+++++..++.+ |+++++|...-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccccC
Confidence 344556666789999999999999999999987 432 69999999 89999999999988865 99999998764322
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+||.|++.. .. . ..... +.+.|++||+++.
T Consensus 140 apfD~I~v~~---a~-~-~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTA---AV-P-EIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESS---BB-S-S--HH----HHHTEEEEEEEEE
T ss_pred CCcCEEEEee---cc-c-hHHHH----HHHhcCCCcEEEE
Confidence 7899999843 11 1 12233 4456899999874
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.11 E-value=7e-10 Score=110.01 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=88.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccE
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.++...+.+..+|...... .++||.
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 344567899999999999999998886 44589999999 9999999999999987445557777765442 368999
Q ss_pred EEEcccccc--ccC-cc----------------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 148 IISEWMGYF--LLR-ES----------------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~--l~~-e~----------------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+++..... ... .. ....++....++|||||.++.+.+++..
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 998754222 111 00 1356788889999999999988777653
No 134
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.2e-09 Score=93.96 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=90.2
Q ss_pred HHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC
Q 016314 67 FNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL 141 (391)
Q Consensus 67 ~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~ 141 (391)
++++...+. ...+.++||+-+|||.+++.++.+|+.+++.||.+ ......+++++..++...++++..|.... ..
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 344444443 27899999999999999999999999999999999 99999999999999888899999998854 22
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
. ++||+|+.++.-.....+.....+.-.-..+|+|+|.+++.....
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 3 359999998842211111111111212458999999998776544
No 135
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=2.5e-11 Score=105.65 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=92.4
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-H
Q 016314 36 KEVDFANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-K 111 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~ 111 (391)
.....+..|+.|++..++. |-|+.. .....+.|... ..-+=+++||||||||+.+..+... +.+++|+|+| .
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~--LVdkL~Y~vP~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~n 158 (287)
T COG4976 83 PSAYVETLFDQYAERFDHI--LVDKLGYSVPELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISEN 158 (287)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHHhcCccHHHHHHHHHhc-cCCccceeeecccCcCcccHhHHHH-HhhccCCchhHH
Confidence 3344577899999888774 333332 23334444433 2222479999999999999888766 4589999999 9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 112 MSDHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 112 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.|.++--. + ++.+.+...+ ..+++||+|++ +.+.|. +.++.++.....+|+|||.+.++.-
T Consensus 159 Ml~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 159 MLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchhhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEec
Confidence 99888764321 1 3334444332 22489999998 454444 4678889999999999999987743
No 136
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=7.9e-10 Score=98.94 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCC---CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016314 62 RMDAYFNSIFQNKH---HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~~~---~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
.++.|.+++.+.+. ..++..+||+|||+|.+++.++.. +...|+|||.| .++..|.+|++++++.+++.+++-++
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 45667666665543 234568999999999999888765 66689999999 89999999999999999999997766
Q ss_pred ccC---C--C-CCcccEEEEccccccccCc------------------------chHHHHHHHHhccccCCeEEEcccc
Q 016314 137 EDI---V--L-PEKVDVIISEWMGYFLLRE------------------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~---~--~-~~~~D~Ivs~~~~~~l~~e------------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.- + + .+++|+++|++ .|....+ ..+-.++.-..|.|+|||.+.+...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCC-CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 542 1 2 27999999987 3432211 0133445566799999998876643
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=1.4e-09 Score=108.33 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
++.+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|+| .|++.|+++++.+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 455555565655556778999999999999999998864 89999999 99999999999999865 999999987632
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ---~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+ .++||+|++++.-.. +..+++.+.+ ++|+++++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 257999999874222 1233455544 58888877653
No 138
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.07 E-value=1.1e-09 Score=85.28 Aligned_cols=100 Identities=33% Similarity=0.387 Sum_probs=78.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccccccc
Q 016314 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~~~~l 157 (391)
+|||+|||+|.++..+++....+++++|.+ .++..+++...... ..+++++.+|+.+... +.++|+|+++.+....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888656689999999 88888876444333 3458999999988763 4789999986543321
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016314 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......++..+.+.|+|+|.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345778889999999999998865
No 139
>PLN02476 O-methyltransferase
Probab=99.07 E-value=1e-09 Score=101.28 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~D 146 (391)
.+.++||||||++|..++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+|..+.- + .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45789999999999999999985 2 3379999999 899999999999999999999999987641 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|+.+.- ......+++.+.++|+|||+++....-+
T Consensus 197 ~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 197 FAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 9998652 2345677888889999999988765543
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.06 E-value=6.8e-10 Score=98.51 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~-~~~~D 146 (391)
.+.++||+|||++|.-++.+|+. + ..+|+.+|.+ +.++.|++++++.|+.++|+++.+|..+.- . .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 45689999999999999999986 2 2489999999 899999999999999999999999987641 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 9997541 223456777788999999998877654433
No 141
>PLN02672 methionine S-methyltransferase
Probab=99.05 E-value=1e-09 Score=117.53 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=97.0
Q ss_pred cCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC-------
Q 016314 57 LSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ------- 126 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~------- 126 (391)
+.-...++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.|+++
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 3334456666666433211 1245789999999999999998874 4589999999 9999999999987642
Q ss_pred --------CcEEEEEcccccCCCC--CcccEEEEccccccccCc------------------------------------
Q 016314 127 --------DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRE------------------------------------ 160 (391)
Q Consensus 127 --------~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e------------------------------------ 160 (391)
++|+++++|+.+.... .+||+|||++. |+...+
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred ccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 4699999999775422 36999999873 332110
Q ss_pred chHHHHHHHHhccccCCeEEEcccceeEEeecc
Q 016314 161 SMFDSVICARDRWLKPTGVMYPSHARMWVAPIR 193 (391)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~ 193 (391)
.....++....++|+|||.+++..+.-....+.
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 012456677788999999999887766555443
No 142
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=1e-09 Score=100.31 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=74.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
...+|||+|||+|.+++.+++. +..+|+++|++ .|++.|+++. .+++++++|+.++....+||+|++++.-+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCcc
Confidence 3568999999999999888775 34589999999 9999988753 13899999999876567899999987332
Q ss_pred cccCcc---------------h--HHHHHHHHhccccCCeEEEcc
Q 016314 156 FLLRES---------------M--FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~---------------~--~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+..+. . +..++.....+|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 221110 0 345566667788888866554
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=96.60 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=87.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---CCCcccEE
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV---LPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~---~~~~~D~I 148 (391)
....++||+||++.|.-++++|.. . ..+++.||.+ ++++.|+++.++.|+.++|+++. +|..+.- ..++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 346789999999999999999987 2 3589999999 99999999999999999999999 5776642 24899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+.+. .....+.+++.+.++|+|||+++....-+.
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9753 122456788888999999999887765444
No 144
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.03 E-value=1e-09 Score=95.24 Aligned_cols=103 Identities=30% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEcccccCC-----CCCcccE
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--LQDVVEVIEGSVEDIV-----LPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~~D~ 147 (391)
..++++|||||||+|+.++.+++. +..+|++.|.++.++.++.+++.|+ ...++.+...|..+-. .+.+||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 467899999999999999999999 7779999999988899999999987 5666888887754411 1268999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
|++ ...+..+...+.++..+.++|+++|.++
T Consensus 123 Ila---sDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 123 ILA---SDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEE---ES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred EEE---ecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 998 2333445678889999999999998844
No 145
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.03 E-value=2.1e-09 Score=104.59 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 142 (391)
+.+.+...+...++.+|||+|||+|.+++.++..+. +|+|||++ .+++.|+++++.+++. +++++.+|+.++.. .
T Consensus 221 l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~ 298 (374)
T TIGR02085 221 LYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQM 298 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcC
Confidence 333333333334567999999999999999998774 89999999 9999999999999986 59999999977532 2
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+||+|+.++.-. +....+++.+.+ ++|+++++.+.
T Consensus 299 ~~~D~vi~DPPr~-----G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 SAPELVLVNPPRR-----GIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CCCCEEEECCCCC-----CCcHHHHHHHHh-cCCCeEEEEEe
Confidence 5699999998532 222344555533 68888777653
No 146
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.00 E-value=2.9e-09 Score=96.76 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--
Q 016314 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-- 141 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 141 (391)
...|...+...+|.+|||.|+|+|.++..+++. | ..+|+..|.. +.++.|+++++..++.++|++.+.|+.+-.+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 346777788899999999999999999999987 3 4589999999 9999999999999999889999999965322
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcc
Q 016314 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPS 183 (391)
Q Consensus 142 --~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L-kpgG~~i~~ 183 (391)
...+|.|+.++.. +..++..+.+.| ++||.+...
T Consensus 109 ~~~~~~DavfLDlp~--------Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 ELESDFDAVFLDLPD--------PWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T-TTSEEEEEEESSS--------GGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccCcccEEEEeCCC--------HHHHHHHHHHHHhcCCceEEEE
Confidence 3679999987642 223466667779 899987743
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.98 E-value=6.1e-09 Score=103.64 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
.+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ ++|+|+|++ .+++.|+++++.+++.+ ++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHH
Confidence 34444455555544566899999999999999999875 489999999 99999999999999864 999999997631
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ..+||+|+.++.-.. ....+++.+.+ ++|+++++.+
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 1 246999999874322 22345555443 7888876654
No 148
>PLN02366 spermidine synthase
Probab=98.97 E-value=7.6e-09 Score=97.52 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=84.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCC--C-CCcccEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~-~~~~D~I 148 (391)
.+.++||+||||.|.++..+++. +..+|+.||++ .+++.|++..... ++ .++++++.+|....- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34689999999999999999988 35689999999 8999999987542 23 347999999976542 2 3689999
Q ss_pred EEccccccccCc-chHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 149 ISEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 149 vs~~~~~~l~~e-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+++......... -.-..+++.+++.|+|||+++......+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 997643221111 11356788899999999999876554443
No 149
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.97 E-value=3.8e-09 Score=93.09 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016314 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
|+..-+..|.+. ..++.+|||+.||.|.+++.+|+. .+++|+|+|++ ..++.++++++.|+++++|.++++|.+++
T Consensus 87 rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 87 RLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp GGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred ccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 333334445554 357899999999999999999984 35589999999 89999999999999999999999999998
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016314 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
.....+|-|++++.... ..++....+++++||++
T Consensus 165 ~~~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LPEGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred cCccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 65689999998654322 23566677888999875
No 150
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.97 E-value=2.8e-09 Score=92.51 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=73.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-CcccEEEEcccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~D~Ivs~~~~ 154 (391)
+..-|||||||+|+.+..+...|. .++|+|+| .|++.|.+.--+ -.++.+|+-+ +++. +.||-+||...-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 79999999 999999872211 3677888864 4544 899999883322
Q ss_pred ccccCc--------chHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLLRE--------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+++. .-+..++..++..|++|+..++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 222221 12556778889999999988765
No 151
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.97 E-value=8.6e-09 Score=95.98 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=80.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccC--CCCCcccEEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDI--VLPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~D~Ivs 150 (391)
.+++||+||||+|.++..+++.. ..+|+++|++ .+++.|++.....+ + ..+++++.+|..+. ..+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34699999999999998888875 6689999999 89999998875432 1 24588888887663 12478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016314 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.......... ....+++.+.+.|+|||+++....
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76432211111 135678889999999999987644
No 152
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=3.5e-09 Score=93.23 Aligned_cols=97 Identities=26% Similarity=0.346 Sum_probs=68.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. +..+|+++|++++. .. .+++++++|+.+.. .+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 457899999999999999888776 34479999999422 11 23788888887642 23 67
Q ss_pred ccEEEEcccccc-ccC-c------chHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYF-LLR-E------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~-l~~-e------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+++...+. ..+ . .....++..+.++|+|||.+++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999998642111 100 0 12367888899999999998864
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=4.8e-09 Score=92.39 Aligned_cols=108 Identities=20% Similarity=0.376 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-----CC----------------------
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-----LQ---------------------- 126 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-----~~---------------------- 126 (391)
.+.++.+|||||.+|.+++.+|+. |+..|.|+|++ ..+..|+++++..- ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 467789999999999999999987 88899999999 89999999875321 00
Q ss_pred -------C-------cEEEEEcccccCCCCCcccEEEEc----cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 127 -------D-------VVEVIEGSVEDIVLPEKVDVIISE----WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 127 -------~-------~v~~~~~d~~~~~~~~~~D~Ivs~----~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ +..+...|+.++. ..+||+|+|= |+.-. .++.-+..++..+.++|.|||++|....
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLN-wgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLN-WGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecc-cccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 0 1111112222111 2689999982 22212 2233478899999999999999986543
No 154
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.93 E-value=8.3e-09 Score=98.14 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccCC-----CC
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~-----~~ 142 (391)
++.+|||||||.|.-.....+++.++++|+|++ ..++.|+++.+.. ...-...++.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999887777777888899999999 8999998887321 11123677888875431 12
Q ss_pred --CcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 --EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+||+|-|-. |.|....+.....++..+...|+|||+||-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4999999954 7888888888888999999999999999844
No 155
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=5.5e-09 Score=95.19 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C------CCcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~ 145 (391)
.+.++||+||+++|.-++.+|+. + -.+|+.+|.+ +..+.|++++++.|+.++|+++.++..+.- + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45689999999999999999886 2 2389999999 899999999999999999999999987741 1 2589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 99997541 223456677778999999998876554443
No 156
>PRK01581 speE spermidine synthase; Validated
Probab=98.92 E-value=9e-09 Score=97.70 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH-----HHcCC-CCcEEEEEcccccCC--CCCccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV-----KANNL-QDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~~~--~~~~~D 146 (391)
...++||+||||+|.....+.+.. ..+|++||++ +|++.|++.. ....+ .++++++.+|..++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345799999999999988888874 5689999999 9999999621 11222 457999999998752 237899
Q ss_pred EEEEcccccccc--CcchHHHHHHHHhccccCCeEEEccc
Q 016314 147 VIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|++++...... ..-.-..+++.+++.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999986432211 11112567888999999999987653
No 157
>PRK03612 spermidine synthase; Provisional
Probab=98.91 E-value=6.5e-09 Score=105.40 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHH--HH---cCCC-CcEEEEEcccccCC--CCCccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLV--KA---NNLQ-DVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~--~~---~~~~-~~v~~~~~d~~~~~--~~~~~D 146 (391)
.++++|||||||+|..+..+++.+. .+|++||++ ++++.|+++. .. ..++ ++++++.+|.++.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3568999999999999999988854 699999999 9999999832 21 1222 46999999998742 347999
Q ss_pred EEEEccccccccC--cchHHHHHHHHhccccCCeEEEcccce
Q 016314 147 VIISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivs~~~~~~l~~--e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+|+++........ .-....+++.+++.|+|||+++.....
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999864322110 111245788889999999999876543
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=95.79 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.|.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++...+..++++++++|+.+..+ .++|
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d 103 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD 103 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence 3455555556788999999999999999998865 79999999 9999999998877755679999999988765 4789
Q ss_pred EEEEccc
Q 016314 147 VIISEWM 153 (391)
Q Consensus 147 ~Ivs~~~ 153 (391)
+|++++.
T Consensus 104 ~VvaNlP 110 (294)
T PTZ00338 104 VCVANVP 110 (294)
T ss_pred EEEecCC
Confidence 9999863
No 159
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.89 E-value=1.9e-09 Score=95.09 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=70.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~~~l 157 (391)
+.++|+|||+|.-++.+|.. +++|+|+|+| .|++.|++.-...-.....++...++.++.- ++++|+|+| ..++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~---Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA---AQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehh---hhhH
Confidence 38999999999878888887 6789999999 9999888754332222223444444555432 489999998 3333
Q ss_pred cCcchHHHHHHHHhccccCCe-EEEc
Q 016314 158 LRESMFDSVICARDRWLKPTG-VMYP 182 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG-~~i~ 182 (391)
++- +++.+.+.++|+||++| ++.+
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 333 57889999999999887 4443
No 160
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.87 E-value=1.5e-08 Score=89.68 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CC-CcccEEEEccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV-LP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~-~~~D~Ivs~~~ 153 (391)
++.+|||+|||+|.++..+++.....++|+|++ ++++.|++ . .++++++|+.+ +. ++ ++||+|+|...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 567999999999999998887644478999999 88877753 1 26888888876 32 33 68999999542
Q ss_pred cccccCcchHHHHHHHHhccccCC
Q 016314 154 GYFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
+.+-.+...+++++.+.++++
T Consensus 85 ---l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 85 ---LQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred ---hHcCcCHHHHHHHHHHhCCeE
Confidence 222234667778777766543
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.86 E-value=1.7e-08 Score=93.44 Aligned_cols=83 Identities=29% Similarity=0.448 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..+.|.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .|++.+++++.. .++++++++|+.++.++ .
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~-~ 91 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP-E 91 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch-h
Confidence 344455555556789999999999999999999865 89999999 999999987754 23599999999987764 5
Q ss_pred ccEEEEccc
Q 016314 145 VDVIISEWM 153 (391)
Q Consensus 145 ~D~Ivs~~~ 153 (391)
+|.|++++.
T Consensus 92 ~d~Vv~NlP 100 (258)
T PRK14896 92 FNKVVSNLP 100 (258)
T ss_pred ceEEEEcCC
Confidence 899999874
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.9e-08 Score=94.32 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~ 142 (391)
.+.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|++-|+.|.+..++.+ ..++.. |++.++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4445555555567889999999999999999999999 79999999 99999999999998876 555555 99999988
Q ss_pred C-cccEEEEccccccccC-------cchHHHHHHHHhccccCCeEEEcccc
Q 016314 143 E-KVDVIISEWMGYFLLR-------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~-~~D~Ivs~~~~~~l~~-------e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ .+|.|++++. |.-.. +.....+++.+...|++||.+++...
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 4999999873 33221 23466778888999999998876544
No 163
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.84 E-value=9.7e-09 Score=97.29 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=137.3
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc--cccccCcc-hHHHHHHHHhccccCCe
Q 016314 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM--GYFLLRES-MFDSVICARDRWLKPTG 178 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~--~~~l~~e~-~~~~~l~~~~~~LkpgG 178 (391)
+++-.+.+ .....-.++.-...+.+ ++.+..=+ ..+++.|+++.+++ .....+.. .+-.....++..+.|+-
T Consensus 391 ~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~ 466 (636)
T KOG1501|consen 391 KRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDEL 466 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCce
Confidence 45555666 33333344444444433 33333221 22345687776653 11222221 11223455667889999
Q ss_pred EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhh---hhhhcccCceeecCCCCc
Q 016314 179 VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQ---KKYYLQTSLWSNLHPDQV 255 (391)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 255 (391)
.+.|..+.+.+.|.. +...+++..+...+.|||++.|.++..... +.....+++|+ ++...
T Consensus 467 ~V~P~~~~L~Ai~~k--------------F~DL~~I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWE--Y~~~~ 530 (636)
T KOG1501|consen 467 RVEPHMGVLKAIPEK--------------FEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWE--YAGIV 530 (636)
T ss_pred eeccccchhhhhhHH--------------HHHHHhhcccccccccceeeehhHHHHhhchhhhhhhccchhhh--ccCee
Confidence 999999988886663 233456777788999999999966443210 01111246666 67888
Q ss_pred cccceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCC-------CCCCC
Q 016314 256 IGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS-------TYNGT 328 (391)
Q Consensus 256 ls~p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~-------~~~~~ 328 (391)
+++|.++++|++......+ +..+.+. +.+.-||+.+|++++|.+ +.|||+-. ..+..
T Consensus 531 ~~d~~eIL~F~~~~~V~~Q------k~~V~i~-~~~sS~A~~mWME~~~~~---------~nLSTGLL~~~~~G~~~WN~ 594 (636)
T KOG1501|consen 531 KGDAVEILRFPIDGRVSSQ------KCVVNID-NMSSSNAIPMWMEWEFGG---------INLSTGLLSISSAGVPEWNK 594 (636)
T ss_pred cCCceeEEEeccCCccccc------eeEEEcc-CCCccccceeeEEeeeCc---------eeecccceeecCCCCcccCc
Confidence 9999999999998755433 3556667 999999999999999964 55555431 14567
Q ss_pred CccceEEecCCccccCCCCEEEEEEEEEeCCCC
Q 016314 329 HWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKEN 361 (391)
Q Consensus 329 hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~ 361 (391)
|.||+||++..-+ .-.-++.+.+.+.++..+
T Consensus 595 ~~KQ~VYF~~t~L--~~~ksl~~~~~F~~~TGD 625 (636)
T KOG1501|consen 595 GYKQGVYFPITAL--RNDKSLCLHALFDKSTGD 625 (636)
T ss_pred cccceeEEEhHHh--CCCceEEEEEEEcCCCCc
Confidence 9999999874444 333467777777666543
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=3e-08 Score=93.58 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEE-cccccCC-----CCCcccEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIE-GSVEDIV-----LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~-----~~~~~D~I 148 (391)
++.+|||||||+|.+...++.. ...+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4578999999999776665543 33379999999 9999999999999 7988898865 3333321 13689999
Q ss_pred EEcccccccc
Q 016314 149 ISEWMGYFLL 158 (391)
Q Consensus 149 vs~~~~~~l~ 158 (391)
+|++. |+..
T Consensus 194 vcNPP-f~~s 202 (321)
T PRK11727 194 LCNPP-FHAS 202 (321)
T ss_pred EeCCC-CcCc
Confidence 99984 4433
No 165
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=8.4e-09 Score=90.98 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=78.3
Q ss_pred EEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEEc
Q 016314 81 TVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIISE 151 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Ivs~ 151 (391)
+||+||||.|.....+.+-.. -+|+++|.| .+++..+++...+. .++.....|+..-. .++.+|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 799999999998888877633 279999999 88888887766553 33555555554432 22789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+...+..+ ....+++.+.++|||||.+++.++..+-
T Consensus 152 FvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 544444444 3567899999999999999988776654
No 166
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=3.7e-08 Score=85.87 Aligned_cols=120 Identities=24% Similarity=0.303 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC-e---------EEEEech-HHHHHHHHHHHHcCCCCcEEE
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR-K---------VYAVEAT-KMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~-~---------V~avD~s-~~~~~a~~~~~~~~~~~~v~~ 131 (391)
.+....++.......++..|||--||+|.+.+.++..+.. . ++|+|++ .+++.|+++++..++.+.|.+
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 3455666776666677889999999999999988776321 2 7899999 999999999999999988999
Q ss_pred EEcccccCCC-CCcccEEEEccccccc--cC----cchHHHHHHHHhccccCCeEEEcc
Q 016314 132 IEGSVEDIVL-PEKVDVIISEWMGYFL--LR----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 132 ~~~d~~~~~~-~~~~D~Ivs~~~~~~l--~~----e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.|+.++++ .+.+|+||+++. |.. .. +.....+++.+.++|++...++..
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EecchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999999984 489999999873 332 11 123456678888999995544433
No 167
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=2.8e-08 Score=89.12 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=78.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH------H-c----CCCCcEEEEEcccccCCCC--
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK------A-N----NLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~------~-~----~~~~~v~~~~~d~~~~~~~-- 142 (391)
.++.+||+.|||.|.-+.++|+.|. +|+|+|+| ..++.+.+... . + --...|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3568999999999999999999999 59999999 77776644210 0 0 0013499999999998631
Q ss_pred --CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 --EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|+-... .+.....+...+.+.+.++|+|||.++..
T Consensus 121 ~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 58999876432 22334456788899999999999987643
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.82 E-value=1.9e-08 Score=97.73 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=79.1
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~~ 155 (391)
+.+|||++||+|.+++.++.. ++.+|+++|++ .+++.++++++.|++.+ ++++++|+..+.. .++||+|+.++.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 468999999999999998775 66689999999 99999999999999875 7899999877533 4679999998742
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+++...+.++++|++.++
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234566655668999998877
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=1e-08 Score=91.95 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-c------C----CCCcEEEE
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-N------N----LQDVVEVI 132 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~------~----~~~~v~~~ 132 (391)
.+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . . -..+|+++
T Consensus 25 ~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 25 ALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 33344443 3345667999999999999999999998 79999999 777776432211 0 0 02358999
Q ss_pred EcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 133 EGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 133 ~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++|+.++... ++||+|.=-..- +.....+-..+.+.+.++|+|||.++.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred EcccccCChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 9999998654 579999964432 233445678889999999999999543
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=2.6e-08 Score=92.83 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=65.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-c
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-V 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 145 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.++++... ++++++++|+.+++++.- .
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 3444455556778999999999999999999976 89999999 999999886642 359999999999876532 5
Q ss_pred cEEEEccc
Q 016314 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivs~~~ 153 (391)
|.||+++.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 89999863
No 171
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.77 E-value=2.3e-08 Score=91.64 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEcccccC------CCCC
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSVEDI------VLPE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~------~~~~ 143 (391)
..++..++|+|||-|.-.+..-++|..+++++|++ -.++.|+++.+...-.. .+.|+.+|.... +.+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 35678899999999998888888999999999999 78888887765321111 278999987543 2233
Q ss_pred -cccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 144 -KVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 -~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+||+|-|-. +.|....+.....++..+.+.|+|||+||=..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 499999853 56666666667888999999999999998443
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.76 E-value=2.8e-08 Score=89.48 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
+..++.......++++|||+|||+|.++..+++.|+++|+|+|++ .|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 334444433346788999999999999999999999899999999 67754
No 173
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.76 E-value=2.9e-08 Score=85.58 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~ 152 (391)
.++.+|||||||.|.+...+.+.-..+.+|+|++ +.+..+.+ +| +.++++|+.+- .++ ++||.||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIl-- 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVIL-- 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEeh--
Confidence 4689999999999999888887544479999999 65544432 33 78999999763 244 89999986
Q ss_pred ccccccCcchHHHHHHHHhcccc
Q 016314 153 MGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~Lk 175 (391)
...+..-..+..+++++.|+-+
T Consensus 82 -sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 -SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred -HhHHHhHhHHHHHHHHHHHhcC
Confidence 3333333446677777755533
No 174
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.75 E-value=8e-09 Score=90.49 Aligned_cols=121 Identities=24% Similarity=0.260 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhc--CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccc
Q 016314 62 RMDAYFNSIFQN--KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVE 137 (391)
Q Consensus 62 r~~~~~~~i~~~--~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~ 137 (391)
+.+-|.+++.+. ....++.+|||.+.|-|..++.++++||.+|+.+|.+ ..++.|.-|=-..++ +..|+++.+|+.
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 344455555443 2334689999999999999999999999999999999 888776543211111 124899999998
Q ss_pred cC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 138 DI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 138 ~~--~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++ .++ ++||+|+.++.-+.+..+-.-..+.+++.|+|+|||.++-
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 86 344 7899999998766665655567888999999999999874
No 175
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.72 E-value=1.1e-07 Score=91.72 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 141 (391)
+.+.+.+.+.+.. .+.+|||++||+|.+++.+++.. ++|+|||.+ ++++.|+++++.+++.+ ++++.+|+.++..
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHH
Confidence 3334444444322 23469999999999999888764 589999999 99999999999999865 9999999877421
Q ss_pred ----------C------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 142 ----------P------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ----------~------~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. .++|+|+.++.-. +....+++.+.+ |+++++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 0 1379999988532 223445555433 66666654
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=8.7e-08 Score=90.58 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=83.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.+|.+|||+-||.|.+++.+|+.|..+|+|+|+| ..+++++++++.|++.+.|+.+++|.+++... +.+|-|++..+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 4589999999999999999999998779999999 89999999999999999999999999998766 88999997432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. ...++....+.+++||++-.
T Consensus 266 --~~----a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 --KS----AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred --Cc----chhhHHHHHHHhhcCcEEEE
Confidence 21 23456666677888987653
No 177
>PRK04148 hypothetical protein; Provisional
Probab=98.70 E-value=2e-07 Score=76.21 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++ + +.++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH
Confidence 44556666655567899999999997 8999999887 79999999 766666543 2 78999999887655
Q ss_pred -CcccEEEE
Q 016314 143 -EKVDVIIS 150 (391)
Q Consensus 143 -~~~D~Ivs 150 (391)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.8e-07 Score=77.95 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..+.+||||||+|..+-++++. +.....++|+| .+++..++.++.|+.. +..++.|+..--.++++|+++-++ +
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNP-P 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNP-P 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECC-C
Confidence 3578999999999999988886 34478899999 8888889999888865 889999987754458999999876 3
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEc
Q 016314 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e-------------------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|....+ ...+.++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 332211 1256777888888999998653
No 179
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.69 E-value=1.7e-07 Score=90.86 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
.+.+.+.+...+.. .+.+|||++||+|.+++.+++. +++|+|||.+ .+++.|+++++.+++. +++++.+|+.++-
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444444322 2357999999999999988876 5589999999 9999999999999986 4999999987641
Q ss_pred -C---------------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 141 -L---------------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~---------------~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ..+||+|+.++.- . +..+.++..+.+ ++++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~----G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-A----GLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-C----CCcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999999853 2 223344554433 56665544
No 180
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.68 E-value=1.2e-07 Score=85.13 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
...+.|.......+...||++|.|||.++..+.++|+ +|+|+|++ .|+....++++-...+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3445566666677889999999999999999999987 79999999 99999999888777778899999999888765
Q ss_pred cccEEEEcc
Q 016314 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivs~~ 152 (391)
.||++|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999976
No 181
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.68 E-value=6.5e-08 Score=85.20 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=77.3
Q ss_pred hcCChHhHHHHHHHHHh-cCCC---CCCCEEEEECCccc----HHHHHHHHc---CC---CeEEEEech-HHHHHHHHHH
Q 016314 56 MLSDRVRMDAYFNSIFQ-NKHH---FQGKTVLDVGTGSG----ILAIWSAQA---GA---RKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~-~~~~---~~~~~VLDlGcG~G----~ls~~~a~~---g~---~~V~avD~s-~~~~~a~~~~ 120 (391)
++.|....+.+.+.+.. .+.. .+..+|+..||+|| .+++.+.+. .. -+|+|+|+| .+++.|++-+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~ 84 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGI 84 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTE
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCC
Confidence 34556666677776662 3221 23478999999999 466666662 12 279999999 8998886522
Q ss_pred --------------HHc-------C------CCCcEEEEEccccc-CCCCCcccEEEE-ccccccccCcchHHHHHHHHh
Q 016314 121 --------------KAN-------N------LQDVVEVIEGSVED-IVLPEKVDVIIS-EWMGYFLLRESMFDSVICARD 171 (391)
Q Consensus 121 --------------~~~-------~------~~~~v~~~~~d~~~-~~~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~~ 171 (391)
++. . +.++|+|.+.|+.+ .+..++||+|+| +.+-|+ .+.....+++.+.
T Consensus 85 Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 85 YPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLH 162 (196)
T ss_dssp EEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS---HHHHHHHHHHHG
T ss_pred CCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe--CHHHHHHHHHHHH
Confidence 000 0 12469999999988 333489999999 444444 3345688999999
Q ss_pred ccccCCeEEEcccc
Q 016314 172 RWLKPTGVMYPSHA 185 (391)
Q Consensus 172 ~~LkpgG~~i~~~~ 185 (391)
+.|+|||.+++...
T Consensus 163 ~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 163 RSLKPGGYLFLGHS 176 (196)
T ss_dssp GGEEEEEEEEE-TT
T ss_pred HHcCCCCEEEEecC
Confidence 99999999987644
No 182
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.67 E-value=1.8e-07 Score=82.67 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=75.3
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEEEEccc
Q 016314 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~Ivs~~~ 153 (391)
..+||||||.|.+.+.+|+. .-..++|||+. ..+..|.+.+...++.| +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999888887 44579999999 88888988888889876 99999998773 23488998886433
Q ss_pred cccccCc-----chHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFLLRE-----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e-----~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....-.. -.-+.++..+.+.|+|||.+.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 2222111 12467888999999999988654
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.5e-08 Score=78.98 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.|.......+|++++|||||+|.++..++-.++..|.|+|+. ++++.+.+++....++ +.++++|+.++.+. +.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEe
Confidence 345556678899999999999999988877788899999999 9999999999988776 79999999998766 7899
Q ss_pred EEEEcc
Q 016314 147 VIISEW 152 (391)
Q Consensus 147 ~Ivs~~ 152 (391)
..+.++
T Consensus 117 taviNp 122 (185)
T KOG3420|consen 117 TAVINP 122 (185)
T ss_pred eEEecC
Confidence 999875
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.8e-07 Score=92.08 Aligned_cols=119 Identities=24% Similarity=0.282 Sum_probs=92.2
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016314 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
+...++.+...+.+.+...++.+|||+-||.|.+++.+|+... +|+|+|++ ++++.|+++++.|++.| ++|+.++.+
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHH
Confidence 3455666666666666667788999999999999999997644 89999999 99999999999999988 999999999
Q ss_pred cCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 138 DIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 138 ~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++... ..+|+|+.++.-..+. ..+++.+.+ ++|..+++++..
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGAD-----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCCC-----HHHHHHHHh-cCCCcEEEEeCC
Confidence 87433 4789999988654432 345555543 567766665533
No 185
>PLN02823 spermine synthase
Probab=98.66 E-value=2.2e-07 Score=88.62 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||.||+|.|.++..+.+. +..+|++||++ .+++.|++....++ + .++++++.+|...+- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988886 56789999999 99999999875432 2 457999999988752 2378999999
Q ss_pred cccccc---ccCcchHHHHHH-HHhccccCCeEEEcc
Q 016314 151 EWMGYF---LLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~---l~~e~~~~~~l~-~~~~~LkpgG~~i~~ 183 (391)
+..... ....-.-..+++ .+++.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 853221 011011235666 788999999998765
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.65 E-value=4.9e-07 Score=78.81 Aligned_cols=99 Identities=29% Similarity=0.379 Sum_probs=79.6
Q ss_pred EEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016314 81 TVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~ 158 (391)
+++|||+|.|.-++.+|-. ...+++.+|.+ .-+...+..+...+++| ++++++++++.....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhc----
Confidence 7999999999988888776 34479999999 88888899999999986 99999999994445899999997653
Q ss_pred CcchHHHHHHHHhccccCCeEEEccccee
Q 016314 159 RESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.+..++.-+.++|++||.++...+..
T Consensus 126 ---~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 126 ---PLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp ---SHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 35677888899999999988765543
No 187
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.65 E-value=5.5e-08 Score=85.49 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 156 (391)
..++||.|+|.|..+..+.-.-+.+|..||+. ..++.|++..... .....++.+..++++.++ .+||+|.+.|...+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 47899999999999986654457799999999 9999998765441 123468899999998765 79999999986555
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|..+ ++-.+|..++..|+|+|.|++-..
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence 5444 688899999999999998886543
No 188
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=1e-07 Score=81.64 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.|..+.....+++|||+|+|+|+.++.++++|++.|++.|+. -....++-|++.|+.. |.+...|... .+..+|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CCccee
Confidence 4566666677899999999999999999999999999999999 6777788889999976 8899888776 357899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+|+. +........-..++. +.+.|+..|.
T Consensus 145 l~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 145 LLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred EEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 9987 222222223344555 4444555543
No 189
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.64 E-value=3.5e-07 Score=83.78 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=77.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.......+.++|+|||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -++|. +|++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D~~ 162 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-ADVY 162 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ESEE
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-ccce
Confidence 344444445579999999999999998887 3337999999877777776 467999999998 45666 9999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCC--eEEEcccc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPT--GVMYPSHA 185 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~Lkpg--G~~i~~~~ 185 (391)
+...+.+.+.. .....+|+.+++.|+|| |++++...
T Consensus 163 ~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 97444444333 34678899999999999 99887644
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.63 E-value=3.2e-07 Score=85.14 Aligned_cols=111 Identities=22% Similarity=0.209 Sum_probs=87.1
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEEcc
Q 016314 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
++||-||-|.|..+..+.+.. ..+++.||++ .+++.+++...... . ..+++++.+|..++- .+++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999985 5689999999 99999999875432 2 368999999988763 336899999976
Q ss_pred ccccccCcch-HHHHHHHHhccccCCeEEEcccceeEEe
Q 016314 153 MGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~l~~e~~-~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 190 (391)
.......+.. -..+++.+++.|+++|+++......+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5443222211 3578899999999999999886665554
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.60 E-value=2.5e-07 Score=85.44 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016314 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++++ .+
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~ 92 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DF 92 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-Hc
Confidence 33444555556778999999999999999999876 69999999 999998877643 24599999999987764 56
Q ss_pred c---EEEEcc
Q 016314 146 D---VIISEW 152 (391)
Q Consensus 146 D---~Ivs~~ 152 (391)
| +|++++
T Consensus 93 d~~~~vvsNl 102 (253)
T TIGR00755 93 PKQLKVVSNL 102 (253)
T ss_pred CCcceEEEcC
Confidence 6 888876
No 192
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.58 E-value=7e-07 Score=85.08 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---------------------------------------- 102 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~---------------------------------------- 102 (391)
.+....+|.......++..++|--||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 5667778888777778889999999999999998877531
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc--ccCcchHH----HHHHHHhccc
Q 016314 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF--LLRESMFD----SVICARDRWL 174 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~--l~~e~~~~----~~l~~~~~~L 174 (391)
.++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+ +.+|+||||+. |. +..+.... .+.+.+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 37799999 99999999999999999999999999999877 89999999983 43 22332333 3334445666
Q ss_pred cCCeEEEcccc
Q 016314 175 KPTGVMYPSHA 185 (391)
Q Consensus 175 kpgG~~i~~~~ 185 (391)
+.-+..|+...
T Consensus 335 ~~ws~~v~tt~ 345 (381)
T COG0116 335 AGWSRYVFTTS 345 (381)
T ss_pred cCCceEEEEcc
Confidence 66666665544
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.58 E-value=3.8e-07 Score=88.26 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=80.8
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~ 153 (391)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|++.+ ++++++|+..+.. ..+||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999987 78899999999 99999999999998864 8999999887632 267999998873
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ....+++.+.+.++++|.+.+.
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1235677777888999988766
No 194
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=1.5e-07 Score=80.53 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=60.6
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016314 105 YAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
+|+|+| +|++.|+++.+..+ ..++|+++++|+.+++++ ++||+|++. +.+.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234599999999999876 689999983 33443346788999999999999998
Q ss_pred Ecccc
Q 016314 181 YPSHA 185 (391)
Q Consensus 181 i~~~~ 185 (391)
++...
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 76533
No 195
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.56 E-value=3.1e-07 Score=80.40 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=79.2
Q ss_pred EEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016314 81 TVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~Iv 149 (391)
+|||||||||..+..+|++-. -+..-.|.+ ......+..+...++++....+..|+.+-.. ++.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998733 356677888 6656777777777877655666667665421 25899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|..|.++..++ ....++....++|++||.++..-.
T Consensus 108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCC
Confidence 97666776665 568899999999999999885543
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.1e-07 Score=82.17 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=74.2
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016314 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+|.|..- .+.|.......++..|||||+|.|.++..+++.++ +|+|+|++ .++...++... ..++++++++
T Consensus 12 FL~d~~v----~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~ 83 (259)
T COG0030 12 FLIDKNV----IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVING 83 (259)
T ss_pred cccCHHH----HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeC
Confidence 4555533 45566666666789999999999999999999977 69999999 88888887765 2345999999
Q ss_pred ccccCCCCC--cccEEEEccccccc
Q 016314 135 SVEDIVLPE--KVDVIISEWMGYFL 157 (391)
Q Consensus 135 d~~~~~~~~--~~D~Ivs~~~~~~l 157 (391)
|+...+++. .++.||+++ .|..
T Consensus 84 DaLk~d~~~l~~~~~vVaNl-PY~I 107 (259)
T COG0030 84 DALKFDFPSLAQPYKVVANL-PYNI 107 (259)
T ss_pred chhcCcchhhcCCCEEEEcC-CCcc
Confidence 999998886 789999987 4443
No 197
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=82.11 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 156 (391)
...++||||+.|.+...+...|..+++-+|.| .|++.++.. +.+++. +..+.+|-+.+++. +++|+|++.+ .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhcccccccchhhhhhhh---h
Confidence 36799999999999999998888899999999 999888763 345544 67788898888876 8999999843 4
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++|.++++..+..++..|||+|.||-.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 556667888888899999999998743
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.51 E-value=1e-06 Score=87.71 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016314 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||++||.|.=+..+|.. +...|+|+|++ .-+..+++++++.|+.+ |.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 3468899999999999988888775 23489999999 88999999999999976 889999987753 347899999
Q ss_pred Eccccccc--c--Cc---------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 150 SEWMGYFL--L--RE---------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l--~--~e---------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+...... . .. .....+|....++|||||+++-+.+++.-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 86643321 1 10 01246777888999999999988887543
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=8.8e-07 Score=78.56 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=96.2
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC---CCC--CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HH
Q 016314 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH---HFQ--GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KM 112 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~---~~~--~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~ 112 (391)
-..|++.........+........+.|.+.+...+. ..+ +++++|||+|.|.-++.+|-. ...+|+-+|.. .-
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk 103 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK 103 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence 344555444443333333334445566665554332 122 589999999999998887743 33369999999 88
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+...+....+.+++| ++++++.++++....+ ||+|+|..+. .+..+..-+..++++||.++.
T Consensus 104 ~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 104 IAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchh
Confidence 888999999999977 9999999999875444 9999997653 356677778899999998764
No 200
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.49 E-value=2.7e-07 Score=78.28 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~Ivs~~ 152 (391)
.+|+|+.||.|..++.+|+.+. +|+|||++ ..++.|+.+++-.|..++|+++++|+.++... . .+|+|++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999855 89999999 89999999999999999999999999886322 2 289999865
No 201
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.49 E-value=7.6e-07 Score=86.00 Aligned_cols=93 Identities=27% Similarity=0.321 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016314 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
-++.+.+.+.+.+...++ .|||+-||.|.+++.+|+... +|+|||.+ .+++.|+++++.|++.+ ++|+.+++.++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 345555556666655555 799999999999999998755 89999999 99999999999999976 999998776541
Q ss_pred C----------------C-CcccEEEEccccccc
Q 016314 141 L----------------P-EKVDVIISEWMGYFL 157 (391)
Q Consensus 141 ~----------------~-~~~D~Ivs~~~~~~l 157 (391)
. . ..+|+|+.++.-.++
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 1 268999998864444
No 202
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=6.3e-07 Score=79.46 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcE-EEEEcccccCCC-
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVV-EVIEGSVEDIVL- 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~- 141 (391)
.+..++...--..+++++||||+-||.++..+.+.||++|+|+|.. ..+..--+. ..+| .+-..+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 4445565554467899999999999999999999999999999998 544332211 1224 344456666543
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 --~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+..|+++|+. .+. .+..++..+..+++|++.+++
T Consensus 140 ~~~~~~d~~v~Dv-SFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV-SFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe-ehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 36789999975 222 467888899999999997764
No 203
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.48 E-value=8.3e-07 Score=81.61 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=89.5
Q ss_pred hhcCChHhHHHHHHHHHhcCC-CC--CCCEEEEECCccc----HHHHHHHHcCC------CeEEEEech-HHHHHHHHHH
Q 016314 55 EMLSDRVRMDAYFNSIFQNKH-HF--QGKTVLDVGTGSG----ILAIWSAQAGA------RKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~-~~--~~~~VLDlGcG~G----~ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~ 120 (391)
.++.++...+.+.+.+...+. .. ..-+|+.+||+|| .+++.+.+.+. -+|+|+|++ .+++.|+.-+
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 456677777777776664321 12 2568999999999 46777777642 379999999 8999886522
Q ss_pred HH-----cC-----------------------CCCcEEEEEcccccCC-CCCcccEEEE-ccccccccCcchHHHHHHHH
Q 016314 121 KA-----NN-----------------------LQDVVEVIEGSVEDIV-LPEKVDVIIS-EWMGYFLLRESMFDSVICAR 170 (391)
Q Consensus 121 ~~-----~~-----------------------~~~~v~~~~~d~~~~~-~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~ 170 (391)
-. .+ +...|.|-..|+..-. .++.||+|+| +.|-|+ .+.....++...
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF--d~~~q~~il~~f 227 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF--DEETQERILRRF 227 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee--CHHHHHHHHHHH
Confidence 11 11 1234777777776655 5688999999 555444 334567889999
Q ss_pred hccccCCeEEEcccc
Q 016314 171 DRWLKPTGVMYPSHA 185 (391)
Q Consensus 171 ~~~LkpgG~~i~~~~ 185 (391)
...|+|||.+++-..
T Consensus 228 ~~~L~~gG~LflG~s 242 (268)
T COG1352 228 ADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHhCCCCEEEEccC
Confidence 999999999886543
No 204
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.47 E-value=9.2e-07 Score=81.05 Aligned_cols=107 Identities=24% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCC---CCcEEEEEcccccC--CCCC-cccEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNL---QDVVEVIEGSVEDI--VLPE-KVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~--~~~~-~~D~Iv 149 (391)
+.++||-||-|.|..+..+.+.. ..+|++||++ .+++.|++....... .++++++.+|...+ ...+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998874 5689999999 899999997765322 35799999999775 2235 899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016314 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.......... ....+++.+++.|+|+|+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 976542211111 23578899999999999988654
No 205
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.43 E-value=3.8e-06 Score=76.71 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~I 148 (391)
...-+||||.||.|...+-+... . ..+|...|.| ..++..++.+++.|+++.++|.++|+.+.. +....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999887766654 3 3589999999 889999999999999998899999987742 22457887
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+...+.-.......+...+..+.+.+.|||++|.....++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 7644322222223466678889999999999997665444
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.43 E-value=1.8e-06 Score=90.77 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcC-----------------------------------------
Q 016314 63 MDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAG----------------------------------------- 100 (391)
Q Consensus 63 ~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~g----------------------------------------- 100 (391)
.+.+..++...... .++..++|-+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 45666777766554 457899999999999988876521
Q ss_pred --CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEccccccc--cCcchHHHHHHHHhc
Q 016314 101 --ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWMGYFL--LRESMFDSVICARDR 172 (391)
Q Consensus 101 --~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Ivs~~~~~~l--~~e~~~~~~l~~~~~ 172 (391)
..+++|+|++ .+++.|++++..+|+.+.|++.++|+.++..+ +++|+|++|+ .|.. ..+..+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP-PYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNP-PYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECC-CCcCccCchHHHHHHHHHHHH
Confidence 1259999999 99999999999999998899999999987654 4699999997 3332 222234444444333
Q ss_pred ccc---CCeEE
Q 016314 173 WLK---PTGVM 180 (391)
Q Consensus 173 ~Lk---pgG~~ 180 (391)
.|+ +|+.+
T Consensus 333 ~lk~~~~g~~~ 343 (702)
T PRK11783 333 RLKQQFGGWNA 343 (702)
T ss_pred HHHHhCCCCeE
Confidence 333 66554
No 207
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.42 E-value=7.3e-07 Score=80.35 Aligned_cols=94 Identities=28% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~ 155 (391)
...++||||+|.|..+..++.. .++|++.|.| .|.. +.++.|+ +++. ..++. .+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~----~vl~--~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGF----TVLD--IDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCC----eEEe--hhhhhccCCceEEEee---hh
Confidence 4478999999999999999887 4579999999 7744 3444443 3332 22232 2368999998 23
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+..-..+..+++.+++.|+|+|++|+...
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 344445678899999999999999886543
No 208
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.41 E-value=8.3e-07 Score=82.67 Aligned_cols=124 Identities=18% Similarity=0.251 Sum_probs=83.2
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCccc----HHHHHHHHcC-----CCeEEEEech-HHHHHHHHHHH-----
Q 016314 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG----ILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLVK----- 121 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G----~ls~~~a~~g-----~~~V~avD~s-~~~~~a~~~~~----- 121 (391)
+.|....+.+.+.+... ...-+|+..||.|| .+++.+.+.. .-+|+|+|+| .+++.|++-+-
T Consensus 97 FRd~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~ 173 (287)
T PRK10611 97 FREAHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEEL 173 (287)
T ss_pred cCCcHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHH
Confidence 34444444444443221 22369999999999 4666666642 1279999999 89999876420
Q ss_pred -------------H-----cC-------CCCcEEEEEcccccCCC--CCcccEEEEcc-ccccccCcchHHHHHHHHhcc
Q 016314 122 -------------A-----NN-------LQDVVEVIEGSVEDIVL--PEKVDVIISEW-MGYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 122 -------------~-----~~-------~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~ 173 (391)
. .+ +.+.|+|.+.|+.+.+. .++||+|+|.. +.|+ .......++..+.+.
T Consensus 174 r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 174 KTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DKTTQERILRRFVPL 251 (287)
T ss_pred hcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHH
Confidence 0 01 23468888889887443 38999999943 3333 233578899999999
Q ss_pred ccCCeEEEcccc
Q 016314 174 LKPTGVMYPSHA 185 (391)
Q Consensus 174 LkpgG~~i~~~~ 185 (391)
|+|||.++....
T Consensus 252 L~pgG~L~lG~s 263 (287)
T PRK10611 252 LKPDGLLFAGHS 263 (287)
T ss_pred hCCCcEEEEeCc
Confidence 999999876643
No 209
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.41 E-value=1.7e-06 Score=72.33 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
...+.+...+....+.-|||+|.|||.++..+.++|. ..++++|.| +......+... .++++.+|..++.
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHH
Confidence 3345566666667788999999999999999999874 479999999 88776665432 2789999998875
Q ss_pred -C----CCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 141 -L----PEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~----~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ...||.|+|-. +..+.. ..-..+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~--~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPM--HRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcH--HHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 26799999953 222222 23456788888889999988744
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=2.2e-06 Score=75.55 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC-CCcc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL-PEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~-~~~~ 145 (391)
....+++||||.-||.-++..|.+ --.+|+++|++ ...+.+.+..+..|..++|++++++..+. .. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 356789999999999988888876 22379999999 89999999999999999999999987663 11 3789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+++.+. +.......+..+.++||+||+++.....+..
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999743 1112235677778999999998877665555
No 211
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=3e-06 Score=76.24 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=78.6
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~Ivs~~~ 153 (391)
..+||||||.|.+...+|+.. -..++|||+. ..+..|.+.+.+.++.| +.+++.|+..+- .+ ++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999988888874 4479999999 88899999999999963 999999998752 23 48888876332
Q ss_pred ccccc--C---cchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFLL--R---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~--~---e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....- + .-..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 22111 1 112467888999999999998754
No 212
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.31 E-value=2.6e-06 Score=74.38 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=52.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
.++.+|.|+|||.+.++..+. .+. +|...|+-. .| -.++.+|+..++++ +.+|++|+-+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n-----~~Vtacdia~vPL~~~svDv~VfcL--- 130 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN-----PRVTACDIANVPLEDESVDVAVFCL--- 130 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS-----TTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC-----CCEEEecCccCcCCCCceeEEEEEh---
Confidence 345799999999999985543 233 599999852 11 14677999999988 8999998732
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.|-+ ..+..++.+..|+|||||.+.+...
T Consensus 131 SLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 131 SLMG-TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp ---S-S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhC-CCcHHHHHHHHheeccCcEEEEEEe
Confidence 1112 2467789999999999999776543
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-06 Score=74.24 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCC--eEEEEech-HHHHHHHHHHHHcC--------C-CCcEEEEEcccccCCCC
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA-GAR--KVYAVEAT-KMSDHARTLVKANN--------L-QDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~--~V~avD~s-~~~~~a~~~~~~~~--------~-~~~v~~~~~d~~~~~~~ 142 (391)
..+|.+.||+|+|||.|+.++++. |+. .+.|||.- +.++.+++++.+.- + ...+.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 578999999999999999988865 332 34899998 99999999887643 1 13478899999987655
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+||.|.+ +.. ...+.+++...|++||.++
T Consensus 160 ~a~YDaIhv---GAa------a~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHV---GAA------ASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEE---ccC------ccccHHHHHHhhccCCeEE
Confidence 89999997 311 1122333444577777655
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.28 E-value=5.8e-06 Score=73.35 Aligned_cols=95 Identities=28% Similarity=0.360 Sum_probs=66.5
Q ss_pred EEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccccc
Q 016314 82 VLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLL 158 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~ 158 (391)
|.||||-.|.+++.+.+.|. .+|+|+|++ .-++.|+++++.+++.++|+++.+|-.+.-.+ +..|+||...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 68999999999999999974 479999999 88999999999999999999999996653333 448998876665442
Q ss_pred CcchHHHHHHHHhccccCCeEEE
Q 016314 159 RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...++.+....++....+|
T Consensus 80 ----I~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEE
T ss_pred ----HHHHHHhhHHHhccCCeEE
Confidence 4556666555554443444
No 215
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.26 E-value=8.2e-07 Score=86.73 Aligned_cols=121 Identities=16% Similarity=0.251 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCC--CCC--CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 63 MDAYFNSIFQNKHH--FQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~--~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
-..|.+.|.+.+.. ..+ .++||+|||+|.++..+...+.. +..+-.+..-+...+.+.+.|+...+.+ .-...
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRGvpa~~~~--~~s~r 174 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERGVPAMIGV--LGSQR 174 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcCcchhhhh--hcccc
Confidence 35677777776654 222 57999999999999999988652 3333332111222233344555422221 12356
Q ss_pred CCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 139 IVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 139 ~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
++++ ..||+|-|.-.. ..+...-..++-++.|+|+|||+++.+....+
T Consensus 175 LPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 175 LPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 6777 899999983211 11111113467788999999999998877776
No 216
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.23 E-value=1.7e-05 Score=72.86 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----cC----------------------------
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----NN---------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----~~---------------------------- 124 (391)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-...-.... +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347899999999999999999999 69999999 886554443321 00
Q ss_pred -------CCCcEEEEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 125 -------LQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 -------~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...++....||+.++-.+ ++||+|++ .++++....+-.+++.+.++|||||+.|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 012355556666665333 58999997 4666666667788999999999999766
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.23 E-value=8.7e-06 Score=72.25 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=61.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHH-HcCCCeEEEEech-HHHHHHHHHH-------HHcCC-CCcEEEEEcccccC
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSA-QAGARKVYAVEAT-KMSDHARTLV-------KANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~d~~~~ 139 (391)
|.+.+...++.+.+|||||.|...+.+| ..+.++++|||+. ...+.|+... +..+. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 3344556678999999999999877655 4588789999998 6666554432 23333 24588999998764
Q ss_pred CCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 140 VLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+.. ...|+|+++.. ...+ .+..-+.....-||+|.++|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~---~F~~-~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT---CFDP-DLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHGHC-SEEEE--T---TT-H-HHHHHHHHHHTTS-TT-EEE
T ss_pred HhHhhhhcCCCEEEEecc---ccCH-HHHHHHHHHHhcCCCCCEEE
Confidence 321 46899998542 2233 34444566667789998877
No 218
>PRK00536 speE spermidine synthase; Provisional
Probab=98.14 E-value=1.7e-05 Score=72.80 Aligned_cols=103 Identities=21% Similarity=0.021 Sum_probs=76.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCCCCCcccEEEEcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
...++||-||.|.|.....+.++.. +|+-||++ .+++.+++..... ++ +.+++++.. +.+. ..++||+||++.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 3458999999999999999999864 89999999 8999999854321 22 346777752 2221 137899999975
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 190 (391)
+ . -+.+.+.+++.|+|||+++....+.+..
T Consensus 148 ~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 148 E----P----DIHKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred C----C----ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence 3 1 1456788899999999999887766653
No 219
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.13 E-value=1.2e-05 Score=71.91 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
....+|.|+|||-+.++. .. ...|+..|+-. .+ -.++.+|+.+++++ +++|++|+-+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------~~-----~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------VN-----ERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec----------CC-----CceeeccccCCcCccCcccEEEeeH---
Confidence 345789999999988765 22 22688888741 11 46788999999888 8999988622
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+-.. .+..++.+++|+|++||.+.+...
T Consensus 237 SLMgt-n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 237 SLMGT-NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred hhhcc-cHHHHHHHHHHHhccCceEEEEeh
Confidence 11122 467889999999999998655433
No 220
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.12 E-value=8e-06 Score=76.35 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCC
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPE 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~ 143 (391)
.+.+.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .+++.|++.+.. .++++++++|+.++. +++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc
Confidence 34444555677899999999999999999884 3589999999 999999987754 356999999998863 222
Q ss_pred ---cccEEEEcc
Q 016314 144 ---KVDVIISEW 152 (391)
Q Consensus 144 ---~~D~Ivs~~ 152 (391)
++|.|+.++
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 799999865
No 221
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.9e-06 Score=81.99 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=67.2
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..--+.+...|.+......++.+||+.||||.+++.+|+. +++|+|||++ +.++.|+++++.||+.| .+|+++-.++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3445566677888877778899999999999999999865 6689999999 99999999999999987 9999997666
Q ss_pred C
Q 016314 139 I 139 (391)
Q Consensus 139 ~ 139 (391)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 5
No 222
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=3.4e-05 Score=69.63 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=82.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 142 (391)
..|...+...+|.+|++-|+|+|.++.+++++ .-.+++..|.. .-.+.|++..+..++.+++++.+.|+...-+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 45667777889999999999999999999997 23589999999 78899999999999999999999999876543
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016314 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
..+|.|+.++.... + .++ .+.+.||.+|.
T Consensus 175 s~~aDaVFLDlPaPw---~-AiP----ha~~~lk~~g~ 204 (314)
T KOG2915|consen 175 SLKADAVFLDLPAPW---E-AIP----HAAKILKDEGG 204 (314)
T ss_pred ccccceEEEcCCChh---h-hhh----hhHHHhhhcCc
Confidence 68999998764322 2 223 23346777663
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.09 E-value=5.4e-06 Score=72.39 Aligned_cols=94 Identities=31% Similarity=0.366 Sum_probs=58.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C---CCc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L---PEK 144 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~---~~~ 144 (391)
++.+||||||++|.++..+.+.+ ..+|+|+|+..+ ... ..+..+++|+.+.. + .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999997 568999999843 111 22677777765431 1 158
Q ss_pred ccEEEEccccccccC----c----chHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLR----E----SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~----e----~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|+|+........ + ......+..+..+|+|||.++.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 999999873222111 1 1122233344577999998774
No 224
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.07 E-value=3e-05 Score=73.00 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~ 154 (391)
..++.++|||||++|.++..+++.|+ +|+|||...|.... .. ..+|+.+.+|...... .+.+|+++|+...
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 35789999999999999999999999 89999976654332 12 2348888888776654 5789999998742
Q ss_pred ccccCcchHHHHHHHHhccccCC
Q 016314 155 YFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
.+..+.+-+.++|..|
T Consensus 281 -------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 -------KPARVAELMAQWLVNG 296 (357)
T ss_pred -------CHHHHHHHHHHHHhcC
Confidence 2445666677788776
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=1.4e-05 Score=74.21 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
...+.|.+.+...++..|||||+|+|.++..+++.+ ++|+++|.+ .+++..++... ...+++++++|+.++..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 344445555555578999999999999999999998 589999999 88888887654 2345999999999987654
Q ss_pred ----cccEEEEcc
Q 016314 144 ----KVDVIISEW 152 (391)
Q Consensus 144 ----~~D~Ivs~~ 152 (391)
....|++++
T Consensus 93 ~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 93 LLKNQPLLVVGNL 105 (262)
T ss_dssp HCSSSEEEEEEEE
T ss_pred hhcCCceEEEEEe
Confidence 566788765
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.05 E-value=2.1e-05 Score=65.74 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=58.9
Q ss_pred CCCCEEEEECCcccHHHHHHHH-----cCCCeEEEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCCCcccEE
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQ-----AGARKVYAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~-----~g~~~V~avD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
.+...|+|+|||.|.++..++. ....+|++||.+ ..++.|.++.+..+ +..++++..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5568999999999999999998 433489999999 88899998888877 545577887777665444667788
Q ss_pred EE
Q 016314 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 76
No 227
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.97 E-value=4.4e-05 Score=77.30 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+..+||||||.|-+...+|+.. -..++|+|+. ..+..|.+.+...++.| +.++..|+..+. ++ +++|-|....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45789999999999998888874 3479999999 77777777778888876 888888875432 33 7799888743
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016314 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~--~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....- +. -.-+.+++.+.++|+|||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 322211 11 12467888999999999987654
No 228
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00015 Score=70.16 Aligned_cols=117 Identities=21% Similarity=0.162 Sum_probs=88.0
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-C
Q 016314 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-E 143 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~ 143 (391)
..+...+|.+|||+.++.|.=+..+|+... ..|+|+|.+ .-+...++++++.|+.+ +.+++.|...+. .. +
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccC
Confidence 345567889999999999988777777632 357999999 88999999999999988 788888876542 12 3
Q ss_pred cccEEEEcccccccc---------Cc----------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 144 KVDVIISEWMGYFLL---------RE----------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~---------~e----------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+||.|+.+....... +. .....+|....++|||||.++.+.+++..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 699999876433211 00 12356788889999999999988887654
No 229
>PRK10742 putative methyltransferase; Provisional
Probab=97.93 E-value=8e-05 Score=67.30 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc------C--CCCcEEEEEcccc
Q 016314 69 SIFQNKHHFQGK--TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN------N--LQDVVEVIEGSVE 137 (391)
Q Consensus 69 ~i~~~~~~~~~~--~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~~ 137 (391)
.|.++....++. +|||+-+|+|..++.++..|++ |+++|.+ .+....++.++.. + +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 344444455665 8999999999999999999995 9999999 7777777777663 2 2256999999987
Q ss_pred cCC--CCCcccEEEEcccccc
Q 016314 138 DIV--LPEKVDVIISEWMGYF 156 (391)
Q Consensus 138 ~~~--~~~~~D~Ivs~~~~~~ 156 (391)
++- .+..||+|..++|...
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCC
Confidence 752 3357999999987433
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=3.4e-05 Score=67.69 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=65.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Ccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-~~~ 145 (391)
.++.+|+|||+-.|.++..+++. +. ..|+|||+.+|-. ..+ |.++++|+++-. ++ .++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------IPG-VIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------CCC-ceEEeeeccCccHHHHHHHHcCCCCc
Confidence 35689999999999999999987 33 2499999985421 223 899999998753 23 457
Q ss_pred cEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016314 146 DVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+|+|+......... ......++-...+|+|||.++.
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 999998754221111 1123345555789999998874
No 231
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.89 E-value=9.4e-05 Score=68.93 Aligned_cols=74 Identities=28% Similarity=0.363 Sum_probs=48.6
Q ss_pred CCEEEEECCccc-HHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEccccc-C----CC-CCcccEE
Q 016314 79 GKTVLDVGTGSG-ILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVED-I----VL-PEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcG~G-~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~----~~-~~~~D~I 148 (391)
..++||||||.. +..+..++. |. +++|.|++ ..++.|+++++.| +++++|+++...-.. + .. .+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 358999999986 456665554 66 79999999 8999999999999 999999998764322 1 11 2689999
Q ss_pred EEccc
Q 016314 149 ISEWM 153 (391)
Q Consensus 149 vs~~~ 153 (391)
+|++.
T Consensus 182 mCNPP 186 (299)
T PF05971_consen 182 MCNPP 186 (299)
T ss_dssp EE---
T ss_pred ecCCc
Confidence 99884
No 232
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.88 E-value=4.2e-05 Score=63.84 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=50.0
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
++||+|||.|.++..+++.+.. +|+++|++ .+.+.++++++.|++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999988654 89999999 99999999999998865 8888877655
No 233
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.87 E-value=0.00016 Score=67.42 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..|......+...+|||+|||+|.-...+... ...+++++|.| .|++.++..++................+...-.+
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP 102 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC
Confidence 34444455677789999999999765555443 35589999999 9999999887654321111111111111111134
Q ss_pred ccEEEEc-cccccccCcchHHHHHHHHhccccC
Q 016314 145 VDVIISE-WMGYFLLRESMFDSVICARDRWLKP 176 (391)
Q Consensus 145 ~D~Ivs~-~~~~~l~~e~~~~~~l~~~~~~Lkp 176 (391)
.|+|++. .++... . .....+++.+-..+++
T Consensus 103 ~DLvi~s~~L~EL~-~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 103 DDLVIASYVLNELP-S-AARAELVRSLWNKTAP 133 (274)
T ss_pred CcEEEEehhhhcCC-c-hHHHHHHHHHHHhccC
Confidence 5999983 222222 2 3455666666555555
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.86 E-value=8.1e-05 Score=70.83 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~ 137 (391)
+.+.+.+...++.+|+|-.||+|.+...+.+. ...+++|+|++ .++..|+.++...+.... ..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 44445555566778999999999998777762 34489999999 888888877766665432 458888875
Q ss_pred cCCC---CCcccEEEEccccccc--cCc----------------chHHHHHHHHhccccCCeEEE
Q 016314 138 DIVL---PEKVDVIISEWMGYFL--LRE----------------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~---~~~~D~Ivs~~~~~~l--~~e----------------~~~~~~l~~~~~~LkpgG~~i 181 (391)
.... ..+||+|++++.-... ... ..-..++..+.+.|+++|++.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 5432 2689999998631111 000 011235566678899999754
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.85 E-value=9.1e-06 Score=64.31 Aligned_cols=98 Identities=30% Similarity=0.448 Sum_probs=43.4
Q ss_pred EEECCcccHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEccccc
Q 016314 83 LDVGTGSGILAIWSAQA----GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGY 155 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~----g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~ 155 (391)
||||+..|..+..+++. +..+++++|.....+.+++.+++.++.++++++.++..+. .++ +++|+|+.+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999888777764 2237999999943556666666677777899999998765 233 7899999865211
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
. ......+..+.+.|+|||++++..
T Consensus 81 ~----~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 Y----EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp H----HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred H----HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 234445777788999999998764
No 236
>PHA01634 hypothetical protein
Probab=97.85 E-value=9.7e-05 Score=58.92 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
..++++|+|||++.|-.++.++-.||++|+++|++ .+.+..+++++.+.+=++..-. + +++-. ++||+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccccCCCcceEEEE
Confidence 46789999999999999999999999999999999 8889999988877543322111 1 23222 789988863
No 237
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.80 E-value=0.00012 Score=68.53 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=86.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 147 (391)
+...++..|||+.++.|.=+..+++. +...|+|.|++ .-+...+.++++.|..+ +.++..|..... ....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccch
Confidence 34568899999999999988887776 24589999999 88899999999999876 777778887762 2246999
Q ss_pred EEEcccccccc--C----------cc-------hHHHHHHHHhccc----cCCeEEEcccceeE
Q 016314 148 IISEWMGYFLL--R----------ES-------MFDSVICARDRWL----KPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~l~--~----------e~-------~~~~~l~~~~~~L----kpgG~~i~~~~~~~ 188 (391)
|+.+....... . +. ....+|+...+++ ||||+++.+.+++.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 99876433321 0 01 1346677888999 99999998877664
No 238
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.78 E-value=0.00013 Score=68.71 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=75.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~ 158 (391)
...+|+|.|.|.++..+... +.+|-+++.. +.+..++.... .| |+.+.+|+.+- .| +-|+|+.-|+.+.+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC-CcCeEEEEeecccCC
Confidence 78999999999998888874 5579999999 66555554443 33 78888998775 43 567999988777766
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccc
Q 016314 159 RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ ++..+|+.++..|+|+|.++....
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 65 577899999999999999876544
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.75 E-value=3.1e-05 Score=67.71 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEEc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~Ivs~ 151 (391)
...+|+|.-||.|.-++..|..++ .|++||++ --+..|+.+++-.|++++|+|++||+.++- +. ..+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999988888887777 79999999 789999999999999999999999998862 22 345677643
Q ss_pred cccccccCcchHHHHHHHHhccccCCeE
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+ -+.+.+-+..-+..+..+++|.|.
T Consensus 173 p---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 P---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred C---CCCCcchhhhhhhhhhhhcchhHH
Confidence 2 122222222223344556666643
No 240
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=1.4e-05 Score=66.42 Aligned_cols=114 Identities=16% Similarity=0.288 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccC
Q 016314 65 AYFNSIFQNKHHFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDI 139 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~ 139 (391)
+....+.+......++.||++|.| +|+-++++|.. ..+.|...|-+ ..++..++....|.... ++.++.-+...-
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 333445554445667899999999 47777777765 55689999999 88888888887763322 122222222111
Q ss_pred ---CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 140 ---VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ---~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.....||+|+| ..++.....-.++.+.+.++|+|.|..+
T Consensus 96 qsq~eq~tFDiIla---ADClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 96 QSQQEQHTFDIILA---ADCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHHHhhCcccEEEe---ccchhHHHHHHHHHHHHHHHhCccccee
Confidence 12258999998 3334444456788899999999999854
No 241
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.73 E-value=3.5e-05 Score=70.46 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------C-----------C
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----------------Q-----------D 127 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----------------~-----------~ 127 (391)
..++.++||||||+-+.....|..-+++|+..|.+ ...+..++-++..+- . .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 45678999999999776555555556689999998 666555444432210 0 1
Q ss_pred cE-EEEEcccccCC-------CCCcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 128 VV-EVIEGSVEDIV-------LPEKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ~v-~~~~~d~~~~~-------~~~~~D~Ivs~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.| .++.+|+.+.. +|.++|+|++-.... .-.........++.+.++|||||.+|..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 23 47788887742 234699999843211 1112234566778888999999998854
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.71 E-value=0.00054 Score=60.66 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=73.4
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016314 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
...+..+|..- +...+|.+||-||+.+|.....++.. | -..|+|||.| ...+.....+++. .+|-.+.+|+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA 131 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA 131 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence 34556666543 34567899999999999988888875 4 4479999999 5544444445443 3377778888
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +-+.+|+|+++.. .. .....+...+..+||+||.+++.
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa----Qp-~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA----QP-DQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S----ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCC----Ch-HHHHHHHHHHHhhccCCcEEEEE
Confidence 7642 2278999999752 12 23556667777899999998865
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.67 E-value=0.0005 Score=63.51 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHH-HHHHHHc-CC-CeEEEEech-HHHHHHHHHHH-HcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016314 79 GKTVLDVGTGSGIL-AIWSAQA-GA-RKVYAVEAT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcG~G~l-s~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~ 152 (391)
.++|+=||||.=.+ ++.+++. +. ..|.++|++ +.++.+++.++ ..++..+++|+.+|..+.... ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999998555 4556654 32 369999999 89999999888 677888899999999877544 7899998633
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+- .........++..+.+.++||+.++..
T Consensus 201 lV--g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LV--GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hc--ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 21 111224678999999999999988865
No 244
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.66 E-value=0.00055 Score=56.79 Aligned_cols=99 Identities=26% Similarity=0.300 Sum_probs=65.2
Q ss_pred EEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCCC--cccEEEEcccc
Q 016314 82 VLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLPE--KVDVIISEWMG 154 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~--~~D~Ivs~~~~ 154 (391)
++|+|||+|... .+++... ..++++|.+ .++..++.......... +.++..+... +++.. .+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444322 269999999 88877554443221111 6788888776 55553 79999432211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+. .. ....+..+.+.|+|+|.++.....
T Consensus 130 ~~---~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HL---LP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hc---CC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 11 567788899999999988766444
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.60 E-value=0.00029 Score=66.12 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=83.0
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH--H---HcCC-CCcEEEEEcccccCCC--CCcccEEE
Q 016314 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV--K---ANNL-QDVVEVIEGSVEDIVL--PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~--~~~~D~Iv 149 (391)
.+||-+|.|.|+-...+.+.. ..+|+-||.+ +|++.++++. . .+.+ +.+++++..|..++-- .+.||.||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 689999999999999999984 7799999999 9999988432 2 1222 3479999999888632 27999999
Q ss_pred EccccccccCcc--hHHHHHHHHhccccCCeEEEcccceeEEeec
Q 016314 150 SEWMGYFLLRES--MFDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 150 s~~~~~~l~~e~--~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 192 (391)
.+.....-.... .-..+...+++.|+++|.++......|..|-
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 876433222111 1234556677899999999988777776543
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.53 E-value=0.00027 Score=72.21 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC---------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGA---------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL 141 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~---------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~ 141 (391)
...+|||.+||+|.+...+++... ..++|+|++ .++..++.++...+. ..+.+...|.... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 346899999999999888776421 368999999 888999888876651 1255665654321 11
Q ss_pred CCcccEEEEccc
Q 016314 142 PEKVDVIISEWM 153 (391)
Q Consensus 142 ~~~~D~Ivs~~~ 153 (391)
.++||+||+++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999884
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.49 E-value=0.0017 Score=61.64 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccC-
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDI- 139 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~- 139 (391)
..|...+ .++..++|+|||+|.-+..+.++ + ..+.++||+| ++++.+.+.+....++. .+.-+++|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3444443 35568999999999765443332 1 2369999999 99999988887333433 244488888653
Q ss_pred ---CC---CCcccEEEEccccccccCc--chHHHHHHHHhc-cccCCeEEEcc
Q 016314 140 ---VL---PEKVDVIISEWMGYFLLRE--SMFDSVICARDR-WLKPTGVMYPS 183 (391)
Q Consensus 140 ---~~---~~~~D~Ivs~~~~~~l~~e--~~~~~~l~~~~~-~LkpgG~~i~~ 183 (391)
+. +....+++. +++.+.+- .....+++.+.+ .|+||+.+++.
T Consensus 146 ~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 234567766 33332221 224577888888 99999988764
No 248
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.47 E-value=0.00053 Score=56.54 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=58.8
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC-cccEEEEccccccccCcch-------HHHHHHHHh
Q 016314 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE-KVDVIISEWMGYFLLRESM-------FDSVICARD 171 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~-~~D~Ivs~~~~~~l~~e~~-------~~~~l~~~~ 171 (391)
+|+|.|+. ++++..+++.++.++.+++++++.+-+++.. ++ ++|+++-++ ||....+.. .-..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 9999999999999998899999988777642 34 899999875 777665421 223466667
Q ss_pred ccccCCeEEEcccc
Q 016314 172 RWLKPTGVMYPSHA 185 (391)
Q Consensus 172 ~~LkpgG~~i~~~~ 185 (391)
++|+|||++++..+
T Consensus 80 ~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 80 ELLKPGGIITIVVY 93 (140)
T ss_dssp HHEEEEEEEEEEE-
T ss_pred HhhccCCEEEEEEe
Confidence 89999999886533
No 249
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.40 E-value=0.00033 Score=67.49 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++..++|+|||.|..+...+..+...+++++.+ -.+..+........+.++..++.+|+.+.+++ ..||.+-+ .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~---l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF---L 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE---E
Confidence 4566899999999999999998876689999999 66666666666666766667788888887766 78999987 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
....+......++.+++|.++|||.++....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 2334445677889999999999999886544
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00061 Score=55.90 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=77.3
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016314 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
...+...+..+.+|||+|.|.+.+.+++.|....+|+|.+ =.+.+++-.+-+.++.....|...|+..+++. .|..++
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vv 143 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVV 143 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEE
Confidence 4444455656799999999999999999998789999999 67788888888888888899999998887663 444443
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ...|..++.+-+++..-|..+..++-+
T Consensus 144 i------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 144 I------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred E------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 2 112334555556665556667666643
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.29 E-value=0.0027 Score=56.04 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccEEEEccccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Ivs~~~~~ 155 (391)
+..+.||||-.+.|...+.+.+ +..+++.|++ .-++.|.+++.++++.+++++..+|.... .....+|+|+...||-
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 4459999999999999999885 5689999999 88999999999999999999999998553 3335899998766654
Q ss_pred cccCcchHHHHHHHHhcccc
Q 016314 156 FLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~Lk 175 (391)
.+ ...++++....|+
T Consensus 97 ~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 97 TL-----IREILEEGKEKLK 111 (226)
T ss_pred HH-----HHHHHHHhhhhhc
Confidence 32 3445555444444
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0031 Score=55.27 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+|.+||+||-|-|+..-++.++...+=+.||.. ..++..++..-. -.++|.++.+..++.. ++ +.||-|.-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec
Confidence 6789999999999999999988877778889999 777665543311 1245788887766642 33 7899999755
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ ...| ++..+.+.+.++|||+|++-....
T Consensus 178 y~--e~yE-dl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 178 YS--ELYE-DLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hh--hHHH-HHHHHHHHHhhhcCCCceEEEecC
Confidence 32 2333 566778888999999998765433
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.22 E-value=0.0024 Score=56.30 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=64.1
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcE
Q 016314 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----A-GARKVYAVEAT-KMSDHARTLVKANNLQDVV 129 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~----~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v 129 (391)
+++.+...-.|.+.|-+. +++.|+++|.-.|.-+++.|. . +..+|++||++ .. ..++..+...+.++|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCce
Confidence 345566666677766654 668999999999876666554 2 34589999996 42 223334445566789
Q ss_pred EEEEcccccCC-------C--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 130 EVIEGSVEDIV-------L--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 130 ~~~~~d~~~~~-------~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++++||..+.. . +....+|+-+. .-.++..+ ..|+....++++|+++|+.+..
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~~hvl-~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS---SHTHEHVL-AELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHH-HHHHHHHHT--TT-EEEETSHH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC---CccHHHHH-HHHHHhCccCCCCCEEEEEecc
Confidence 99999987652 1 12344666443 22223333 4466688999999998876554
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.18 E-value=0.0014 Score=63.77 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC--CCCcccEEEEcc
Q 016314 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
+.+|||.=+|+|+=++..++. +..+|++-|+| ++++.++++++.|++++ ++++.+.|+..+- ..+.||+|=.++
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 468999999999999887776 67799999999 99999999999999998 7999999988764 458999998776
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++. ...+++...+.++.||.+.+.
T Consensus 130 fGS-------p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 FGS-------PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------ccHhHHHHHHHhhcCCEEEEe
Confidence 543 346788888889999988755
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0036 Score=54.36 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016314 62 RMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
+...+..+|..- ++..++.+||=||+-+|.-...++.- |...|||||.| .+.......+++. +++-.+.+|+
T Consensus 57 ~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA 133 (231)
T COG1889 57 RRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDA 133 (231)
T ss_pred chhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeeccc
Confidence 345566666543 34567899999999999987777775 65579999999 6544444444332 3367777888
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +-+.+|+|..+... .+...-+......+||++|.+++.
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEE
Confidence 7642 22789999986521 123455667778999999977654
No 256
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0026 Score=62.48 Aligned_cols=99 Identities=16% Similarity=0.309 Sum_probs=73.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH-HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc-cccc
Q 016314 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR-TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYF 156 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~-~~~~ 156 (391)
++|-+|||.--++..+-+.|...|+-+|.| -.+..+. .+++.+ .-..+...|+..+.++ ++||+|+-.. +...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCccccc
Confidence 899999999999999999999999999999 4443333 222222 2278999999999888 8999999843 3333
Q ss_pred ccCcch------HHHHHHHHhccccCCeEEEc
Q 016314 157 LLRESM------FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 157 l~~e~~------~~~~l~~~~~~LkpgG~~i~ 182 (391)
+..+.. ....+..+.++|++||+.+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 333322 34557778899999998653
No 257
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.12 E-value=0.0041 Score=59.78 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 147 (391)
+...+|.+|||+.+-.|.=+..+|.. +-..|+|.|.+ .-+.....++.+.|+.+ ..+...|..+++ ++++||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence 44568899999999998766555554 44479999999 88999999999999876 566667776653 3458999
Q ss_pred EEEcccccc--ccCc-----------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 148 IISEWMGYF--LLRE-----------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~--l~~e-----------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+.+..... +... .....++.....++++||+++-+.+++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 997654333 1111 12345566677899999999988887765
No 258
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.12 E-value=0.012 Score=53.02 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=58.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccE
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 147 (391)
......|++||-||-.. +.|+.+|-. ..++|+.+|++ .+++..++.+++.|++ |+.++.|+++--++ ++||+
T Consensus 39 ~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 39 ERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp HTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred hcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence 33457899999999776 445554443 45689999999 9999999999999998 99999999884222 89999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCe
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
+++++. +-+ .-+..++......||..|
T Consensus 116 f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred EEeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 999884 322 234556666666777655
No 259
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0003 Score=64.38 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=77.2
Q ss_pred CCCEEEEECCcccHHHH-HHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~-~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.+.+|.|+-+|-|.+++ ++..+||+.|+|+|.+ ..++..+++++.|+..++..++.+|.+...+....|-|.. +-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL---GL 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL---GL 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee---cc
Confidence 45789999999999999 8899999999999999 8999999999999988888888999888877788898874 44
Q ss_pred cccCcchHHHHHHHHhccccCCeE-EE
Q 016314 156 FLLRESMFDSVICARDRWLKPTGV-MY 181 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~-~i 181 (391)
....+.-..... ++|+|.|- ++
T Consensus 271 lPSse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 271 LPSSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred ccccccchHHHH----HHhhhcCCcEE
Confidence 444444444333 45666544 44
No 260
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.02 E-value=0.00016 Score=62.61 Aligned_cols=92 Identities=26% Similarity=0.316 Sum_probs=61.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-ccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS-EWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs-~~~~~ 155 (391)
.+.++||+|+|.|-++..++.. ..+|+|.|.| .|....+++ ++. .+..+. -....-++|+|.| +.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn-Vl~~~e----w~~t~~k~dli~clNlL-- 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN-VLTEIE----WLQTDVKLDLILCLNLL-- 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc-eeeehh----hhhcCceeehHHHHHHH--
Confidence 3479999999999999988866 4479999999 887765542 221 111111 1112247999998 333
Q ss_pred cccCcchHHHHHHHHhccccC-CeEEEcc
Q 016314 156 FLLRESMFDSVICARDRWLKP-TGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~Lkp-gG~~i~~ 183 (391)
..--+.-.+++.+..+|+| +|.+|..
T Consensus 180 --DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 --DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred --HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 2223456778888889999 7887754
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.0036 Score=53.64 Aligned_cols=96 Identities=25% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-ccccC--------CCC-C
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG-SVEDI--------VLP-E 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~-~ 143 (391)
..++.+|||+||..|.++..+.+. ....|.|||+-... .. ..++++++ |+++. .+| .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence 357899999999999999999887 24479999985211 11 12566666 66653 134 6
Q ss_pred cccEEEEcccccc-----ccCcch---HHHHHHHHhccccCCeEEEc
Q 016314 144 KVDVIISEWMGYF-----LLRESM---FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivs~~~~~~-----l~~e~~---~~~~l~~~~~~LkpgG~~i~ 182 (391)
++|+|+|+....- ..+... ..+++.-....++|+|.++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 8999999764321 111111 12233333467789998774
No 262
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0095 Score=55.21 Aligned_cols=120 Identities=22% Similarity=0.172 Sum_probs=73.5
Q ss_pred hHhHHHHHHHHHhcCCCC-------CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-
Q 016314 60 RVRMDAYFNSIFQNKHHF-------QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE- 130 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~-------~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~- 130 (391)
..|...|...|.+.-... ...+||-=|||.|.|+..++..|. .+-|=|.| -|+-...=.+..-..++.++
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 455555555554443222 246899999999999999999998 47888998 67544332221111112111
Q ss_pred --E------------------------------------EEcccccCCCC----CcccEEEEccccccccCcchHHHHHH
Q 016314 131 --V------------------------------------IEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVIC 168 (391)
Q Consensus 131 --~------------------------------------~~~d~~~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~ 168 (391)
+ ..||+.+.-.. +.||+|+. .++.......-.+++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHH
Confidence 1 22333332111 36999986 355554445566789
Q ss_pred HHhccccCCeEEEcc
Q 016314 169 ARDRWLKPTGVMYPS 183 (391)
Q Consensus 169 ~~~~~LkpgG~~i~~ 183 (391)
.+.+.|||||+.|--
T Consensus 281 tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 281 TIYKILKPGGVWINL 295 (369)
T ss_pred HHHHhccCCcEEEec
Confidence 999999999987743
No 263
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0022 Score=60.09 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=66.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED--IVLP- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~- 142 (391)
..+......+..++|||+|.|.|.-...+-.. -.+.++.+|.|..+...-..+.+|-...+......|+.. ++++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 34444456677789999999988765444433 234688888885555544445555443333333444433 2233
Q ss_pred -CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 -EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..|++++. +...+. .+..+...++.+..++.|||.+++.
T Consensus 183 ad~ytl~i~--~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 183 ADLYTLAIV--LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cceeehhhh--hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 55666654 222222 2233455778888899999988754
No 264
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.84 E-value=0.00073 Score=61.77 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=70.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
.+..+||+|||.|-.... .....+.++|.+ ..+..|++. +...+..+|+..++.+ ..||.+++..+-+
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 478999999999855321 122368999999 777666542 1125777898888776 8999999976666
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016314 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++....--..+++++.+.|+|||..++
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 666665667889999999999998664
No 265
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.81 E-value=0.0095 Score=56.01 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=64.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C
Q 016314 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 141 (391)
.+.+.+...++..++|.=+|.|..+..+++. +..+|+|+|.+ .+++.|++..+.. .+++++++++..++. .
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 3444555567889999999999999998876 34689999999 8999998887654 457999999988752 1
Q ss_pred C-CcccEEEEcc
Q 016314 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivs~~ 152 (391)
+ .++|.|+.++
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 2 5799999865
No 266
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.74 E-value=0.0086 Score=54.92 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=65.1
Q ss_pred CEEEEECCcc--cHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------------CC
Q 016314 80 KTVLDVGTGS--GILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------------VL 141 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~~ 141 (391)
...||||||- -.....+|+. ...+|+-||.+ -.+.+++.....+.- ....++++|+++. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 6799999994 2234555554 34489999999 677888888766532 2478999999874 23
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.+++-+++...+. ++..+.....++..+...|.||.+++++..+.
T Consensus 149 ~rPVavll~~vLh-~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVLH-FVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-GG-GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeeec-cCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 3566666666554 44454568899999999999999999886653
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.59 E-value=0.0026 Score=59.47 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHH-------HHHHHHHHcCCCC-cEEEEEcccccCCCC--Cc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSD-------HARTLVKANNLQD-VVEVIEGSVEDIVLP--EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~~~--~~ 144 (391)
..+|+.|.|=--|||.+...+|..|+ .|+|.|++ .++. ..+.+.+++|... -+.++.+|...-.+- ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 46789999999999999999999999 79999999 7765 2466777877543 256777887765443 68
Q ss_pred ccEEEEcc
Q 016314 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivs~~ 152 (391)
||.|||++
T Consensus 285 fDaIvcDP 292 (421)
T KOG2671|consen 285 FDAIVCDP 292 (421)
T ss_pred eeEEEeCC
Confidence 99999987
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.59 E-value=0.012 Score=53.36 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
+.+.+.+...+ .+..+|+|||||.=.+++...... ...++|+|++ .+++...+.....+.. .++...|...-..
T Consensus 93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 44444444432 236899999999988888655442 2389999999 9999999998888876 6666668776655
Q ss_pred CCcccEEEE
Q 016314 142 PEKVDVIIS 150 (391)
Q Consensus 142 ~~~~D~Ivs 150 (391)
+...|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 688999986
No 269
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.58 E-value=0.0061 Score=53.87 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=58.4
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~~~~ 155 (391)
.++|||||=+..... ...+.-.|++||++.. + -.+.+.|+.+.++| ++||+|++.++-.
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~--------------~-~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ--------------H-PGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC--------------C-CCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 689999997544322 2234446999999730 0 35667788777654 7999999977655
Q ss_pred cccCcchHHHHHHHHhccccCCeE
Q 016314 156 FLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+......--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 554444556788889999999998
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0075 Score=53.36 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=65.4
Q ss_pred CCCCC-CEEEEECCcccHHHHHHHHcC--------C--CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016314 75 HHFQG-KTVLDVGTGSGILAIWSAQAG--------A--RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 75 ~~~~~-~~VLDlGcG~G~ls~~~a~~g--------~--~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 140 (391)
+.++| ++|+||.+..|.++..+++.- . ++|++||+..|+- ++. |.-+++|++...
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHH
Confidence 34455 689999999999999988751 1 1399999986542 333 788889998753
Q ss_pred -----CC-CcccEEEEccccccc-cCc-------chHHHHHHHHhccccCCeEEE
Q 016314 141 -----LP-EKVDVIISEWMGYFL-LRE-------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 -----~~-~~~D~Ivs~~~~~~l-~~e-------~~~~~~l~~~~~~LkpgG~~i 181 (391)
+. ++.|+|||+...... .++ ..+...|.-...+|||||.|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 33 699999997543221 111 112334455578999999987
No 271
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.41 E-value=0.012 Score=53.08 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=48.6
Q ss_pred HHhcCCCCCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHH---HHHHHHHHHcCCC-----CcEEEEEccccc
Q 016314 70 IFQNKHHFQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMS---DHARTLVKANNLQ-----DVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~--~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~---~~a~~~~~~~~~~-----~~v~~~~~d~~~ 138 (391)
+.++....++ .+|||.-+|-|.-++.+|..|+ +|+++|.| -+. ..+.++....... .+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 3444444444 4899999999999999998898 69999999 433 3333344333221 369999999887
Q ss_pred C-CC-CCcccEEEEccccc
Q 016314 139 I-VL-PEKVDVIISEWMGY 155 (391)
Q Consensus 139 ~-~~-~~~~D~Ivs~~~~~ 155 (391)
+ .. ..+||+|..++|..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCCHSS--SEEEE--S--
T ss_pred HHhhcCCCCCEEEECCCCC
Confidence 5 32 37999999998743
No 272
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.37 E-value=0.01 Score=51.33 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=72.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEechHHHHH-------HHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMSDH-------ARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~-~V~avD~s~~~~~-------a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
.....++.+|+|+=.|.|.++..++.. |++ .|++.-..+.... .+...++....| ++.+-.+...+..++
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq 121 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQ 121 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCC
Confidence 345678899999999999999998886 432 6877655422111 111122222223 677777777766668
Q ss_pred cccEEEEcccccccc----CcchHHHHHHHHhccccCCeEEEcccce
Q 016314 144 KVDVIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~----~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+.|++......+.++ +......+..++.+.|||||++++....
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 888887643222222 2334677788889999999998766543
No 273
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0037 Score=57.32 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH-------HHHHHH--HcCCCCcEEEEEcccccCCC--CC
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH-------ARTLVK--ANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~-------a~~~~~--~~~~~~~v~~~~~d~~~~~~--~~ 143 (391)
...+++|||+|||+|+.++.+...|+..+...|.| ..++. +...+. .+....-..+++....+..+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35789999999999999999999987789999988 65521 111111 11111112333331112221 13
Q ss_pred --cccEEEEccccccccCcchHHHH-HHHHhccccCCeEEEcccc
Q 016314 144 --KVDVIISEWMGYFLLRESMFDSV-ICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 --~~D~Ivs~~~~~~l~~e~~~~~~-l~~~~~~LkpgG~~i~~~~ 185 (391)
.||+|.+.-..|... .+..+ ...+..+++++|+++...-
T Consensus 194 ~~~ydlIlsSetiy~~~---~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID---SLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccchhhhhhhhhhhCcc---hhhhhHhhhhhhcCCccchhhhhhH
Confidence 788887632233322 23333 4555678888887765433
No 274
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.15 E-value=0.033 Score=50.65 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHH-----cCCCCcEEEEEcccccCC----CCCc-ccE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA-----NNLQDVVEVIEGSVEDIV----LPEK-VDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~~~----~~~~-~D~ 147 (391)
+...||++|+|+|..++.+|......|.-.|..........+... +++...+.+...+..+.. .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998644478888887444433333322 333323444443332221 1133 899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeE
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
|++.- ....+.....++..+..+|..+++
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~ 194 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGT 194 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCe
Confidence 99832 222334455666777778888883
No 275
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.96 E-value=0.011 Score=58.39 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=66.7
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcccccccc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~~l~ 158 (391)
..|+|..+|.|.++..+.+... -|.-|=.... .-....+-..|+ |-+.+.=.+.++ .|..||+|-++.+.....
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~-~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~ 441 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSG-PNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLYK 441 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCC-CCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhhhhc
Confidence 6899999999999998887653 1222211100 011122333444 444443334443 458999999976544444
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 159 RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
..-.+..++-++.|.|+|+|.+|+.+....+
T Consensus 442 ~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 442 DRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred ccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 4455788899999999999999987655443
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.87 E-value=0.015 Score=56.24 Aligned_cols=94 Identities=28% Similarity=0.295 Sum_probs=60.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-cc----ccCCCCCcccEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SV----EDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~~~~~~~~D~I 148 (391)
.++.+|+-+|||+ |+++..+++. |+++|+++|.+ .-++.|++..... .+..... +. .++.-...+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEE
Confidence 3445999999997 9998887776 88999999999 7788887643211 0111111 11 111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+= ..+ ....+....++++|+|.++..
T Consensus 243 ie-~~G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IE-AVG--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EE-CCC--------CHHHHHHHHHHhcCCCEEEEE
Confidence 84 122 123566667889999998744
No 277
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.79 E-value=0.02 Score=53.51 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=50.3
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016314 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~Ivs~~ 152 (391)
+|+|+.||.|.++.-+.++|.+.|.++|++ .+++..+.+.. + .++.+|+.++.. ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 589999999999999999999889999999 66665555432 1 256778877643 35799999754
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.68 E-value=0.057 Score=54.60 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----------CC--
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----------IV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~-- 140 (391)
.++.+|+-+|||. |+.++.+|+. |+ .|+++|.+ +.++.+++ .|. +++..+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcchh
Confidence 4688999999997 8888887776 88 79999999 66666554 332 211111100 00
Q ss_pred ---------CC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 141 ---------LP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---------~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ ..+|+||.-. ..........+.+...+.+||||.++..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 3699999732 1111111223346777889999998754
No 279
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.0068 Score=59.51 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---CCcccEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~D~Iv 149 (391)
++.+|||.=|++|+-++..|+. |..+|+|-|.+ ..++..+++++.|+..+.++.-+.|+..+- . ...||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999999988886 67789999999 899999999999999888888888876642 2 27899998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.++.+. ...+|+...+.++.||++....-.
T Consensus 189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cCCCCC-------ccHHHHHHHHHhhcCCEEEEEecc
Confidence 766543 346788888889999988765433
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.50 E-value=0.07 Score=50.86 Aligned_cols=92 Identities=27% Similarity=0.283 Sum_probs=60.1
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-cccCC-CCCcccEEEE
Q 016314 76 HFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-VEDIV-LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~-~~~~~D~Ivs 150 (391)
..++++|+-+|+| .|.+++.+|++ |+ +|+++|.+ +-++.|++.-.. .++... ..... ..+.+|+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEE
Confidence 4578999999998 34677888884 86 89999999 778877775432 333322 11111 1245999986
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
-. . ...+....+.|+++|.++..-.
T Consensus 236 tv----~------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 236 TV----G------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred CC----C------hhhHHHHHHHHhcCCEEEEECC
Confidence 22 1 2234455677999999886543
No 281
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.073 Score=50.72 Aligned_cols=97 Identities=26% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~ 154 (391)
..+|||.=+|||+=++..+.. +..+|+.-|+| .+.+.+++|++.|...+ ..+++.|...+-.. ..||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 689999999999999888876 55489999999 99999999999994433 67777887665333 789999877654
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.- ..++++..+.++.+|++-+.
T Consensus 132 SP-------aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 SP-------APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC-------chHHHHHHHHhhcCCEEEEE
Confidence 32 34677777778889987654
No 282
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.10 E-value=0.055 Score=49.92 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCCC-CcEEEEEcccccC--CC-CCcccEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNLQ-DVVEVIEGSVEDI--VL-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~~--~~-~~~~D~Iv 149 (391)
..++||-||-|.|......+++ ....+.-+|+. ..++..++.... .++. .+|.+.-||-..+ .. .++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999888777776 33468899999 777877776544 2332 3588888886544 12 37999999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+.-......+. -...++..+.+.||++|+++...-.+|+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 865333332222 1356677788999999998866554443
No 283
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.95 E-value=0.4 Score=42.38 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCEEEEECCcccHHHHHHHH-c--CCCeEEEEech-HHHHHHHHHHHHcC-----------------------------
Q 016314 78 QGKTVLDVGTGSGILAIWSAQ-A--GARKVYAVEAT-KMSDHARTLVKANN----------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~-~--g~~~V~avD~s-~~~~~a~~~~~~~~----------------------------- 124 (391)
.+-++.|-.||+|.+.-.+.- + ..+.|+|-|++ ++++.|++|.....
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 346899999999986443332 2 23479999999 99999988874211
Q ss_pred ------------CCCcEEEEEcccccC------CCCCcccEEEEccc-cccccCcc-----hHHHHHHHHhccccCCeEE
Q 016314 125 ------------LQDVVEVIEGSVEDI------VLPEKVDVIISEWM-GYFLLRES-----MFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 125 ------------~~~~v~~~~~d~~~~------~~~~~~D~Ivs~~~-~~~l~~e~-----~~~~~l~~~~~~LkpgG~~ 180 (391)
-.....+.+.|+.+. ......|+|+.++. +....|++ ....++..+...|-+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 111256777777763 23345799999762 44444554 3678899999999555555
Q ss_pred Ec
Q 016314 181 YP 182 (391)
Q Consensus 181 i~ 182 (391)
.+
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 284
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.94 E-value=0.081 Score=47.34 Aligned_cols=99 Identities=26% Similarity=0.258 Sum_probs=61.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HH----HHHHHHHHHHcCCCCcEEEEEcccccCC----C
Q 016314 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KM----SDHARTLVKANNLQDVVEVIEGSVEDIV----L 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~ 141 (391)
.++..++.+||=||+++|.....++.. |. .-|||||.| .. +..|+++ .+|-.|..|++... +
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee
Confidence 455678999999999999876666665 32 259999998 32 2333321 22556666776642 1
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-.-+|+|+++... .+. ...+.-....+||+||.++++
T Consensus 224 VgmVDvIFaDvaq----pdq-~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQ----PDQ-ARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCC----chh-hhhhhhhhhhhhccCCeEEEE
Confidence 1467888886532 111 112222346789999998865
No 285
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.94 E-value=0.099 Score=47.78 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEE
Q 016314 75 HHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Iv 149 (391)
..+.|+.|+-+| -.-+.++.++--| +++|..||++ ..+....+.+++.|+++ ++.+.-|+++.-+. .+||+++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeee
Confidence 356788999999 4446666665544 6789999999 89999999999999976 89998899884222 7999999
Q ss_pred Eccc
Q 016314 150 SEWM 153 (391)
Q Consensus 150 s~~~ 153 (391)
.++.
T Consensus 227 TDPp 230 (354)
T COG1568 227 TDPP 230 (354)
T ss_pred cCch
Confidence 9774
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.76 E-value=0.063 Score=52.64 Aligned_cols=106 Identities=22% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-c----ccCCCCCcc
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-V----EDIVLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~----~~~~~~~~~ 145 (391)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. +. ..+.....+ . .++.....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3445778999999987 8888777776 76579999998 7777776542 11 112221111 1 111112469
Q ss_pred cEEEEccccc------------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGY------------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~------------~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+...-+. .+....+....+....+.|+++|.++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 9998622100 0111111234567777889999988754
No 287
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.65 E-value=0.057 Score=48.04 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=53.6
Q ss_pred CCCEEEEECCcccHHHHH--HHHcCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC------CCcccE
Q 016314 78 QGKTVLDVGTGSGILAIW--SAQAGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~--~a~~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~------~~~~D~ 147 (391)
++.++||||.|.-.+--. .-..|. +.+|.|++ ..++.|+.++..| +++..|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999997543222 222366 69999999 8899999999998 787778776654332211 278999
Q ss_pred EEEccc
Q 016314 148 IISEWM 153 (391)
Q Consensus 148 Ivs~~~ 153 (391)
.+|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999873
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.59 E-value=0.17 Score=48.61 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~ 151 (391)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ +-++.|++ .|....+..-..++.++.. .+.+|+|+.-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 34688999999874 6677777776 77789999998 66665554 3432111111112222111 1358988852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+. ...+....++|+++|.++..
T Consensus 243 -~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 -SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 121 12344556788999998754
No 289
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.55 E-value=0.12 Score=45.22 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=61.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcC-------CCCcEEEEEcccccCCCC----Cc
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANN-------LQDVVEVIEGSVEDIVLP----EK 144 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~-------~~~~v~~~~~d~~~~~~~----~~ 144 (391)
+.-.+.|||||-|.|.+.++-... .-+.|.|+- ...++.++++.... +. ++.++..+....... ++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchhhccchhhhcc
Confidence 345689999999999999888743 468999999 88888888877654 22 255655554332111 11
Q ss_pred cc-EEEEcccccccc----CcchHHHHHHHHhccccCCeEEE
Q 016314 145 VD-VIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D-~Ivs~~~~~~l~----~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+ ..++-+-.++.. +.-....++....-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 11 111111011110 00112456666777899999876
No 290
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.54 E-value=0.015 Score=56.04 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016314 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
|=-.|+..|+..+......|... . ..+|..|-|+-||.|.+++.+++.+. +|++-|.+ +++++.+.+++
T Consensus 223 Fk~DfskVYWnsRL~~Eherlsg-------~--fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEHERLSG-------L--FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIK 292 (495)
T ss_pred EEEecceEEeeccchhHHHHHhh-------c--cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhcc
Confidence 33446777766444444433322 1 35678899999999999999999985 89999999 99999999999
Q ss_pred HcCCCCc-EEEEEcccccC
Q 016314 122 ANNLQDV-VEVIEGSVEDI 139 (391)
Q Consensus 122 ~~~~~~~-v~~~~~d~~~~ 139 (391)
.|.+... |+++..|..++
T Consensus 293 lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccccchhheeeecccHHHH
Confidence 9998776 88888887664
No 291
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.38 E-value=0.089 Score=49.28 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-c-cccC------CCC-C
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-S-VEDI------VLP-E 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~~------~~~-~ 143 (391)
...+.+||-+|+|. |++++.+|++ |+++|+.+|.+ .-++.|++. |... +..... + ..++ ... .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~~-~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GATV-TDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCeE-EeeccccccHHHHHHHHHhhcccc
Confidence 35688999999997 9999999998 99999999999 888888873 3221 111111 1 1111 112 4
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+.+.-. . .+..++.....++++|.++..
T Consensus 242 ~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 242 QPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCCeEEEcc---C------chHHHHHHHHHhccCCEEEEe
Confidence 588887511 1 233455556678999996644
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.02 E-value=0.44 Score=44.38 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 140 (391)
+.+...+...++...+|.--|.|..+..+.+.. ..+++|+|.+ .+++.|++.....+ +++++++.++.++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 344455666778999999999999998888774 3579999999 99999999887765 56999999887763
Q ss_pred -CC-CcccEEEEcc
Q 016314 141 -LP-EKVDVIISEW 152 (391)
Q Consensus 141 -~~-~~~D~Ivs~~ 152 (391)
.. +++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 11 6889998764
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=93.74 E-value=0.24 Score=46.39 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..+|..|||--||+|..++.+.+.|- +.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46889999999999999999998877 79999999 899999998754
No 294
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.65 E-value=0.63 Score=42.54 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH---c-C--CCeEEEEech----------------------
Q 016314 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ---A-G--ARKVYAVEAT---------------------- 110 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~---~-g--~~~V~avD~s---------------------- 110 (391)
...|...+..++...+...-...|+|+||-.|..+++++. . + .+++++.|.=
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 4667777888887776444446799999999977665433 1 2 3468887631
Q ss_pred -H----HHHHHHHHHHHcCC-CCcEEEEEcccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 111 -K----MSDHARTLVKANNL-QDVVEVIEGSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~----~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~--~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. ..+..++++...++ .++++++.|.+.+.-. + +++-++-.+. . ..+ .....|..++..|.|||++|
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lYe-sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LYE-STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---chH-HHHHHHHHHHhhcCCCeEEE
Confidence 0 12223333333443 4579999999876422 1 4444444322 1 112 24556888889999999999
Q ss_pred ccccee
Q 016314 182 PSHARM 187 (391)
Q Consensus 182 ~~~~~~ 187 (391)
+.....
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 987765
No 295
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.57 E-value=0.11 Score=49.27 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=49.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016314 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~Ivs~~ 152 (391)
+++|+-||.|.+++-+.++|...|.|+|++ .+.+.-+.+.. ....+|+.++.. ++.+|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 689999999999999999998889999999 66665555542 778889988753 23699999743
No 296
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.53 E-value=0.16 Score=47.93 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=56.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C-
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L- 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~- 141 (391)
+.+.+...++..++|.--|.|..+..+.+. +..+|+|+|.+ .+++.|+++.... .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 344444567789999999999999998876 44689999999 8888888766543 567999999988762 2
Q ss_pred -CCcccEEEEcc
Q 016314 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
..++|-|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 26899999864
No 297
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.38 E-value=0.049 Score=45.75 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEcccc-cC-CCCCcccEEEE-ccc
Q 016314 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--MSDHARTLVKANNLQDVVEVIEGSVE-DI-VLPEKVDVIIS-EWM 153 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~--~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~D~Ivs-~~~ 153 (391)
+++++-+|+..=-.-.++.++||++|+.||.++ .-+..+.++ ..+...|+. ++ ...++||.+.| ..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 578899999977777778888999999999873 111111111 112222221 11 22378998877 122
Q ss_pred cccc--------cCcchHHHHHHHHhccccCCeEEEcc
Q 016314 154 GYFL--------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l--------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.. ...+++.. +..++++|||||.+++.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEE
Confidence 1211 12234444 56678999999998754
No 298
>PRK13699 putative methylase; Provisional
Probab=93.17 E-value=0.42 Score=43.21 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..+|..|||--||+|..+..+.+.|- +.+|+|++ ...+.|.++++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35789999999999999999998877 69999999 888888888765
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.11 E-value=0.25 Score=44.10 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
..+|..|||--||+|..+.++.+.|- +.+|+|++ ...+.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46789999999999999999999877 79999999 88887764
No 300
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.60 E-value=0.22 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s 110 (391)
+.....|||||.|+|.-.+.+.|. +=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345789999999999999999998 47888864
No 301
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.43 E-value=0.36 Score=44.94 Aligned_cols=95 Identities=24% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--cccccCCCCCcccEEEE
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~D~Ivs 150 (391)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.|++ .+....+.... ..+.++.....+|+++-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 34788999999875 6666666665 77669999988 55555544 33321111100 00111111246898874
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
- .+. ...+....+.|+++|.++..
T Consensus 194 ~-~G~--------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 F-SGA--------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred C-CCC--------hHHHHHHHHHhcCCCEEEEe
Confidence 1 111 22345556788999998744
No 302
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.37 E-value=0.41 Score=48.40 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=55.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--------------- 138 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------------- 138 (391)
.++.+||-+|+|. |..+..+++. |+ .|+++|.+ ..++.++. .+. +++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 3568999999997 7777776665 87 59999999 65554443 232 222222211
Q ss_pred --------CC-CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 139 --------IV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 --------~~-~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+. .-..+|+|++-.+ ........-+.++..+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 0156999987432 1112122234555677899999876
No 303
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.35 E-value=0.3 Score=47.53 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCC--CCCcccE
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIV--LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~D~ 147 (391)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ +-++.+++ .|....+.....+.. .+. .++.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3445778899999874 6666666665 77679999988 66665543 343211111111111 110 1236899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+-- .+. ...+....+.|+++|.++..
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEEE
Confidence 8841 111 12344455678999998743
No 304
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.15 E-value=1.2 Score=41.05 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=79.2
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 016314 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVE 137 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~ 137 (391)
..|...+.+.+.+.+... ...|+.||||-=.-...+......+++=+|.-++++.-++.+.+.+. ..+..++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 345555666666655332 34699999997555554432211245555555677777777776543 345888988986
Q ss_pred c-C-------CC-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 138 D-I-------VL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 138 ~-~-------~~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+ + .+ +...-++++|.+.+++..+ ....++..+.....||+.++++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEecc
Confidence 2 1 01 1345688888876666544 5778888888877799888876433
No 305
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.05 E-value=1.3 Score=42.46 Aligned_cols=114 Identities=18% Similarity=0.023 Sum_probs=69.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC---CC--eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------
Q 016314 74 KHHFQGKTVLDVGTGSGILAIWSAQAG---AR--KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------- 140 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g---~~--~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 140 (391)
+...++.+|||+.+-.|.=+..+.++. .. .|+|=|.+ .-+...+.......- ..+.+...|+..++
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 345688999999999998776666652 12 69998988 555555554433322 22444444433221
Q ss_pred --CC-CcccEEEEcccccc--ccCc------------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016314 141 --LP-EKVDVIISEWMGYF--LLRE------------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 141 --~~-~~~D~Ivs~~~~~~--l~~e------------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.. ..||-|+|+..... .... ...-.++..-.++||+||.++-+.+++.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 11 57999999653221 1100 0122456666799999999998877653
No 306
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.04 E-value=0.32 Score=47.06 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc----cCCCCCcccE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE----DIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+++|+++|.+ .-.+.+++ .|....+.....+.. +......+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 345788999999865 6666667776 77679999988 65555543 343211111111111 1111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+- ..+. ...+....+.|+++|+++..
T Consensus 249 vid-~~g~--------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VID-AVGR--------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEE-CCCC--------HHHHHHHHHHhccCCEEEEE
Confidence 884 2121 12244455688999998754
No 307
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.93 E-value=0.19 Score=47.93 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=47.8
Q ss_pred EEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016314 82 VLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+. ++ .++.+|+.++... ..+|+++.-+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999998778899999 6555555443 22 4456788887532 4689998743
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.82 E-value=0.62 Score=49.18 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEech----HHH-----------HHHHHHHHH-----cC
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEAT----KMS-----------DHARTLVKA-----NN 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-------g~------~~V~avD~s----~~~-----------~~a~~~~~~-----~~ 124 (391)
+.-+|||+|=|+|+..+.+.+. .. -+++++|.. +-+ ..+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999865554421 11 278999963 111 112222211 12
Q ss_pred C------CC--cEEEEEcccccCC--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 125 L------QD--VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ~------~~--~v~~~~~d~~~~~--~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+ .+ .++++.+|+++.- +...+|+++.+.+...-..+---..++..+.++++|||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 3567778887642 23579999988765433333234678999999999999887
No 309
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.71 E-value=0.58 Score=44.27 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016314 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+- ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid-~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYD-ASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEE-CCC
Confidence 567899999875 7777777775 88778888887 555544421 1 11 11110 1246898884 222
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ...++...++|+++|+++..
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEE
Confidence 1 12355566789999998744
No 310
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.66 E-value=0.78 Score=46.48 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016314 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
+.|.+.+...+..+|.|-.||+|.+...+++. + ...++|.|++ .....|+.+.--+++...+...++|...-+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 34444444445579999999999876665554 2 2469999999 899999999988887643566666654322
Q ss_pred -----CCCcccEEEEccc
Q 016314 141 -----LPEKVDVIISEWM 153 (391)
Q Consensus 141 -----~~~~~D~Ivs~~~ 153 (391)
..++||.|++++.
T Consensus 256 ~~~~~~~~~~D~viaNPP 273 (489)
T COG0286 256 HDDKDDKGKFDFVIANPP 273 (489)
T ss_pred ccccCCccceeEEEeCCC
Confidence 1267999999774
No 311
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.42 E-value=0.46 Score=45.44 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCCCCcccEE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~D~I 148 (391)
...++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 445688999998864 5566666665 77569999988 65555543 3432111111111 1111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+--. + . ...+....+.|+++|.++.
T Consensus 236 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 236 IECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 8421 1 1 1233444567899998874
No 312
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.28 E-value=0.69 Score=44.61 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEec---h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEA---T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
.++.+||-+|+|. |.++..++++ |+ +|++++. + +-.+.+ ++.|... +.....+..+......+|+|+-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhhhhhcCCCCEEEE
Confidence 4678999999875 7777777776 77 6999986 4 333333 3444321 1111111111111256898875
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-. + . ...+....+.|+++|.++..
T Consensus 245 ~~-g----~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 AT-G----V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred Cc-C----C----HHHHHHHHHHccCCcEEEEE
Confidence 21 1 1 12455566789999988743
No 313
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.13 E-value=0.79 Score=40.64 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=65.1
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016314 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 38 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
-+-...|.--+...-..++|.|..-++ .|.+......+.-|.+||.|.|.++..+..+|+.+...||++ ..+.-.
T Consensus 14 Re~i~lYRLqA~K~LSQNfLMD~~lT~----KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L 89 (326)
T KOG0821|consen 14 REIIKLYRLQAAKQLSQNFLMDLRLTD----KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL 89 (326)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHHHH----HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH
Confidence 333445544444444445566554333 344555556778899999999999999999998889999988 666655
Q ss_pred HHHHHHcCCCCcEEEEEcccccCC
Q 016314 117 RTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+...+... .+..+.++|+..+.
T Consensus 90 Q~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 90 QMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHhhcCC--cceEEeccccceeh
Confidence 55544433 34778888876653
No 314
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.94 E-value=1.1 Score=43.09 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
..++.+||-+|||. |.++..+++ .|+.+|+++|.+ +-++.|++ .+. ...+ .+ +.....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~-~~---~~~~~g~d~viD- 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI-DD---IPEDLAVDHAFE- 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh-hh---hhhccCCcEEEE-
Confidence 35688999999985 666666555 356689999998 66666653 111 1111 11 111124898884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+. . ..+..+....++|+++|+++..
T Consensus 229 ~~G~----~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGG----R-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCC----C-ccHHHHHHHHHhCcCCcEEEEE
Confidence 2221 0 1123455566789999998743
No 315
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.54 E-value=1.9 Score=42.62 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=53.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
.++++|+-+|+|. |.....+++. |+ +|+++|.+ .-+..|++ .|. +.+ +..+. -..+|+|+.-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~--v~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA--VKEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH--HcCCCEEEECC-
Confidence 5789999999997 7666655554 88 79999998 54444443 343 222 12221 14689998621
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+ ....+-....+.+++||+++...
T Consensus 266 G-------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 G-------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 1 11222233467899999887543
No 316
>PLN02740 Alcohol dehydrogenase-like
Probab=90.21 E-value=1.9 Score=42.05 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
....++.+||-+|+|. |.++..+|+. |+++|+++|.+ +-++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3456788999999875 6666666665 77679999998 66666644
No 317
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.14 E-value=1.5 Score=40.32 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCEEEEECCcccHHHHHHHHc-C--------CCeEEEEech-HHHHHHHHHHHHc-----CCCCcEEEEEcccccCCCCC
Q 016314 79 GKTVLDVGTGSGILAIWSAQA-G--------ARKVYAVEAT-KMSDHARTLVKAN-----NLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g--------~~~V~avD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 143 (391)
..+|+|+|+|+|.++.-+.+. . ..+++.||.| .+.+..++.+... ....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 368999999999998887764 1 1379999999 7776666665442 233446663 3444442
Q ss_pred cccEEEE
Q 016314 144 KVDVIIS 150 (391)
Q Consensus 144 ~~D~Ivs 150 (391)
..-+|++
T Consensus 95 ~~~~iia 101 (252)
T PF02636_consen 95 FPGFIIA 101 (252)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 3456666
No 318
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.02 E-value=4.6 Score=35.90 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=60.8
Q ss_pred CCCCEEEEECCccc----HHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCCC-CcccE
Q 016314 77 FQGKTVLDVGTGSG----ILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVLP-EKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcG~G----~ls~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~-~~~D~ 147 (391)
..-+.++++.|+-| .+++.+|. + |. +++.|-.. ..+...++.+...++.+.++|+.++.. ++-.. ..+|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF 118 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDF 118 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCE
Confidence 34467888865533 33444333 3 44 68888887 666677777777788777899998843 33222 68999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++.+. - .++....+|+.+. +.|.|.++....
T Consensus 119 ~vVDc---~--~~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 119 VVVDC---K--REDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EEEeC---C--chhHHHHHHHHhc--cCCCceEEEEec
Confidence 98643 1 1222225666543 556676665433
No 319
>PRK11524 putative methyltransferase; Provisional
Probab=89.82 E-value=0.36 Score=45.22 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEccccccccC--------------cchHHHHHHHHhccccCCeEEEcc
Q 016314 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLR--------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~~--------------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+++++|+.++ .++ +++|+|++++. |.... ...+..++..+.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57899998885 334 78999999873 32210 012356788999999999998865
No 320
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.73 E-value=0.75 Score=44.14 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=53.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~I 148 (391)
...++.+||-.|+|. |.++..+|++ |++.|++++.+ +..+.+++ .|....+.....+.. +......+|.+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 345678999999875 6666666665 77668999988 65555433 333211111111111 11112457734
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.|..+. ...+....++|+++|.++..
T Consensus 233 v~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3333221 22455556788999998754
No 321
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.62 E-value=1.2 Score=42.84 Aligned_cols=39 Identities=33% Similarity=0.597 Sum_probs=31.3
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016314 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..|.|+|.|.|.++.+++-. |. +|+|||-| ...+.|++.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 78999999999999888765 55 79999999 555555443
No 322
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.53 E-value=2 Score=37.28 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=61.6
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--------cCCC--------CcEEEEEcccccCCC
Q 016314 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--------NNLQ--------DVVEVIEGSVEDIVL 141 (391)
Q Consensus 81 ~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--------~~~~--------~~v~~~~~d~~~~~~ 141 (391)
+|.-||+|+ | .++..++.+|. +|+.+|.+ +.++.+++.++. ..+. .++++ ..|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467789987 4 46777788888 79999999 888777766554 1111 23443 3455544
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
...|+|+=.. .........++..+.+++.|+.+|.-...++-.
T Consensus 77 -~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 77 -VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp -CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred -hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 3689988422 222234678899999999999987766555444
No 323
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.46 E-value=0.64 Score=44.55 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=50.5
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~Ivs~~ 152 (391)
.+++|+-||.|.+.+-+.++|..-+.++|++ ..++.-+.+... ..++..|+.++... . ++|+|+.-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5799999999999999999998889999999 555544444322 46677788776433 2 799999743
No 324
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.97 E-value=0.16 Score=39.86 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred cccEEEEcccc---ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 144 KVDVIISEWMG---YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 144 ~~D~Ivs~~~~---~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+||+|+|=.+. +.-.++.-+..+++.+..+|+|||.+|+....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 58999993221 11112334788999999999999999976443
No 325
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.96 E-value=1.2 Score=41.72 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=48.7
Q ss_pred EEECCcccHHH-HH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCCCcccEEEEc
Q 016314 83 LDVGTGSGILA-IW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLPEKVDVIISE 151 (391)
Q Consensus 83 LDlGcG~G~ls-~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~~~~D~Ivs~ 151 (391)
+|||+|...+- +. +.+.+. ...|+|+. .....|..++.+|++...|.+++...... .....||.+.|+
T Consensus 107 iDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 79998875442 22 222344 68899999 67899999999999999888887643221 112459999998
Q ss_pred c
Q 016314 152 W 152 (391)
Q Consensus 152 ~ 152 (391)
+
T Consensus 186 P 186 (419)
T KOG2912|consen 186 P 186 (419)
T ss_pred C
Confidence 7
No 326
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.92 E-value=1.5 Score=41.04 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=64.1
Q ss_pred CCEEEEECCcc-cHHHHHHH-HcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016314 79 GKTVLDVGTGS-GILAIWSA-QAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~-G~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
..+|.-||.|. |..+..+| ..|+ .|+.+|.| +-++...... ..++..+-....++... .+.|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 45678888886 65554444 3467 79999999 7655554433 23477777777666544 78999998432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
......+.-+.+++.+.+|||.+++-
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEEE
Confidence 33444555667777888999998773
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.86 E-value=1.5 Score=39.79 Aligned_cols=93 Identities=28% Similarity=0.402 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~Ivs 150 (391)
.++.+||..|+|+ |.....+++. |. +|++++.+ ...+.+++ .+....+.....+... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 5788999999996 6666666665 64 79999988 65555543 2221111111111100 111357999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. + . ........+.|+++|.++..
T Consensus 208 ~~-~----~----~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 208 AV-G----G----PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CC-C----C----HHHHHHHHHhcccCCEEEEE
Confidence 32 1 1 02344455678899988743
No 328
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.62 E-value=1.4 Score=42.50 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH-------HHHcCC-CCcEEEEEcccccC
Q 016314 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL-------VKANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~-------~~~~~~-~~~v~~~~~d~~~~ 139 (391)
+.+.+...++..-.|+|.|.|.+..++|.. +.+.-+|+|+. ...+.|..+ .+..|- .+.++.+++++.+.
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 334455677889999999999987766554 66677888886 444444332 233343 34588999888764
Q ss_pred C----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 140 V----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
. +....++|+++.+ ...+. +..=+..+..-+++|.++|-
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fdp~-L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFDPE-LKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCCHH-HHHhhHHHHhhCCCcceEec
Confidence 3 2267899997543 22222 22223355566788888773
No 329
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.52 E-value=5.4 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=42.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC------CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016314 77 FQGKTVLDVGTGSGILAIWSAQAG------ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g------~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
.++..++|+|||.|.|+.++++.- ...++.||-...-..+...+........++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 456789999999999999998863 23789999862111233333333211236777788888754
No 330
>PRK13699 putative methylase; Provisional
Probab=87.97 E-value=0.46 Score=42.98 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc-----C-----c---chHHHHHHHHhccccCCeEEEc
Q 016314 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL-----R-----E---SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~-----~-----e---~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++++++|..++ .++ +++|+|+.++. |... . . .-+...+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46788998775 455 89999999873 4321 0 0 1245678889999999998764
No 331
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.79 E-value=1.2 Score=42.27 Aligned_cols=94 Identities=28% Similarity=0.334 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEEE
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~Iv 149 (391)
..++.+||..|+|. |..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+.. .......+|+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 45677888888763 7777777775 66 69999988 66665543 343211111110110 011225789888
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... + ....+....+.|+++|.++..
T Consensus 238 d~~-g--------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFV-G--------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECC-C--------CHHHHHHHHHHhhcCCEEEEE
Confidence 521 1 123455667889999998754
No 332
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.77 E-value=4.3 Score=38.45 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016314 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999988775 4555667787 78888887 545444444433221224888999987752
Q ss_pred CCCcccEEEEcc
Q 016314 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
..+++|++|.+.
T Consensus 90 ~~~~iD~li~nA 101 (313)
T PRK05854 90 EGRPIHLLINNA 101 (313)
T ss_pred hCCCccEEEECC
Confidence 125689999854
No 333
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.33 E-value=2.5 Score=36.79 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=70.6
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016314 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----AG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~----~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
++.....-.|++.|-+ .+...|+++|.-.|..+++.|. .| ..+|.++|++ .-++-+... ...|.
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~ 121 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDIL 121 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeE
Confidence 3444455555555543 4567899999988876666554 35 2379999999 544332221 13499
Q ss_pred EEEcccccCCC-------C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016314 131 VIEGSVEDIVL-------P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 131 ~~~~d~~~~~~-------~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
++.++..+... . +.--+.+| +......+. .-..++...++|.-|-+++..+..+--
T Consensus 122 f~egss~dpai~eqi~~~~~~y~kIfvi--lDsdHs~~h-vLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 122 FIEGSSTDPAIAEQIRRLKNEYPKIFVI--LDSDHSMEH-VLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCcEEEE--ecCCchHHH-HHHHHHHhhhHhhcCceEEEecccccC
Confidence 99999887632 1 12233333 122111222 223366677899999988876655443
No 334
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.22 E-value=1.5 Score=42.29 Aligned_cols=74 Identities=26% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEE
Q 016314 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEATK----------------------MSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 132 (391)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+|+.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 367778888988999998751 123344455444333336666
Q ss_pred EcccccC---CCCCcccEEEE
Q 016314 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6555321 11267999987
No 335
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.09 E-value=3.3 Score=41.66 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016314 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
.-+++|+-||.|.+++-+-++|...|.++|++ .+.+.-+.+... ......+.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 35899999999999999998998888999999 544444433210 111345566776654
No 336
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.97 E-value=3.9 Score=38.20 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------C
Q 016314 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------L 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 141 (391)
...|+.||-=|.|+|+ ++..+|+.|+ ++...|++ +......+.++++| ++....+|+.+.+ -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4568899999999985 6888899999 79999999 66666666666655 4888888887652 1
Q ss_pred C-CcccEEEEcc
Q 016314 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivs~~ 152 (391)
. +.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 2 6899999854
No 337
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.71 E-value=1.2 Score=42.77 Aligned_cols=95 Identities=26% Similarity=0.354 Sum_probs=54.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |..+..+|+. |+.+|++++.+ +..+.+++ .+....+.....+. ..+.....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 445678899888763 5666666665 77679999988 55555543 34321111111111 11111246899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+... + . ...+....+.|+++|+++.
T Consensus 239 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 239 VIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88511 1 1 1235556677899998873
No 338
>PLN02827 Alcohol dehydrogenase-like
Probab=86.50 E-value=3.7 Score=40.02 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=53.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccccc-CC--CCCccc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVED-IV--LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~~--~~~~~D 146 (391)
...++.+||-.|+|. |.+++.+|++ |+..|++++.+ +..+.|+ ..|....+.... .+... +. ..+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 346788999999875 6666666665 87679999987 6555553 344421111111 01111 10 123689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~ 182 (391)
+|+- ..+. ...+....++|+++ |.++.
T Consensus 266 ~vid-~~G~--------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFE-CVGD--------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEE-CCCC--------hHHHHHHHHhhccCCCEEEE
Confidence 8874 1121 12344455678898 98874
No 339
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.24 E-value=4.2 Score=38.63 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCC-CCcccEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVL-PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~-~~~~D~Iv 149 (391)
.++.+||..|||. |..+..+++. |+.+|++++.+ +..+.+++ .+.. .++..+ ...+.. ...+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 3788899998875 5666666665 77579999988 65554443 2332 222211 112211 24589998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
... + . ...+....+.|+++|.++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 521 1 0 1234555678899999874
No 340
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.17 E-value=1.7 Score=39.65 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~ 154 (391)
..++....|+|+..|.++-.+.+.+- .|++||...|...... . ..|+-...|-..+.+ +.+.|-.||+.+.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d----t---g~v~h~r~DGfk~~P~r~~idWmVCDmVE 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD----T---GQVTHLREDGFKFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc----c---cceeeeeccCcccccCCCCCceEEeehhc
Confidence 35678899999999999999999987 7999998776543332 2 337888888877766 4889999997642
Q ss_pred ccccCcchHHHHHHHHhccccCC
Q 016314 155 YFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
....+-..+..+|..|
T Consensus 281 -------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 -------KPARVAALIAKWLVNG 296 (358)
T ss_pred -------CcHHHHHHHHHHHHcc
Confidence 1234444455666665
No 341
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.00 E-value=2.2 Score=37.71 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016314 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 44 5677888899899999865
No 342
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.93 E-value=2.1 Score=40.68 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=37.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHH
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~ 120 (391)
....++.+|.-+|||. |+-++.-|+. |+.+++|||++ .-++.|++.-
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG 230 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG 230 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC
Confidence 3455788999999986 7777776664 99999999999 7788777643
No 343
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.41 E-value=5 Score=31.83 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=44.6
Q ss_pred CEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEE
Q 016314 80 KTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs 150 (391)
.+|.++|-|.=. .+..++++|. .|+++|+++. ++. ..++++..|+.+.... +..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 479999998643 5677888897 6999999831 111 2288999999886654 78999998
No 344
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.13 E-value=2.2 Score=40.13 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..+|.+|.-+|+|. |+...+-+++ ||++++|||+| +-.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 45788999999987 6666666665 99999999999 777766654
No 345
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.03 E-value=2 Score=41.35 Aligned_cols=74 Identities=31% Similarity=0.310 Sum_probs=45.6
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech----------------------HHHHHHHHHHHHcCCCCcEEEE
Q 016314 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT----------------------KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s----------------------~~~~~a~~~~~~~~~~~~v~~~ 132 (391)
....+||-+|||. | .++..++++|..+++.+|.+ .-++.|++.+++.+-.-.++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999994 4 35677888899899999974 1223334444433322235555
Q ss_pred EcccccC---CCCCcccEEEE
Q 016314 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 5554331 11267999987
No 346
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.01 E-value=5.8 Score=37.80 Aligned_cols=88 Identities=20% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS- 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs- 150 (391)
...++.+||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.|++ .|... ++. ..+. ..+.+|+++-
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEEC
Confidence 456788999999864 5555666665 77 69999988 55555544 44332 111 1111 1245786653
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.. ...+....+.|+++|.++..
T Consensus 231 ~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 231 APA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 111 12355556789999998753
No 347
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.01 E-value=1.7 Score=42.11 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---c----ccCCCCCcc
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---V----EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~----~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.++..+|++ |+.+|++++.+ ...+.+++ .+.. .++..+ . .... ...+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~~ 255 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCCC
Confidence 45678899888764 6666666665 88779999988 55554443 2321 222211 1 1112 3568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+|+... + .. ..+....+.|+++|.++.
T Consensus 256 d~vld~~-g----~~----~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 256 DYALDTT-G----VP----AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred cEEEECC-C----Cc----HHHHHHHHHhccCCEEEE
Confidence 9988521 1 11 234555677899998874
No 348
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=15 Score=33.48 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHH-HHHHHHHc-CCCCcEEEEEcccccC--CCCCcccE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDH-ARTLVKAN-NLQDVVEVIEGSVEDI--VLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~-a~~~~~~~-~~~~~v~~~~~d~~~~--~~~~~~D~ 147 (391)
.+...+|+|+|+..=+..+.++ | ..+.+.||+| .+++. |++..... +++ |.-+++|.+.. .+|+.---
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAELPRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcccCCCeE
Confidence 4688999999998766555544 3 3479999999 76654 55554443 333 66677776542 22322222
Q ss_pred EEE---ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 148 IIS---EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs---~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++ ..++.+... ....++..+...|+||-.+++-
T Consensus 156 l~~flGStlGN~tp~--e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPG--ECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChH--HHHHHHHHHHhcCCCcceEEEe
Confidence 222 233433332 3567899999999999988755
No 349
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=84.30 E-value=1.7 Score=37.72 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHhcCCCCCC-CEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccc
Q 016314 61 VRMDAYFNSIFQNKHHFQG-KTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSV 136 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~-~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 136 (391)
.|...+.+.+.+.+...++ ..|+.||||-=.....+... +..+++=+|..++++.-++.+...+.. ...+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 3444444555555433344 48999999987777777764 233566666667777777776665321 2245788888
Q ss_pred ccCC---------C-CCcccEEEEccccccccCcchHHHHHHH
Q 016314 137 EDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICA 169 (391)
Q Consensus 137 ~~~~---------~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~ 169 (391)
.+.. + +...-++++|.+...+..+ ....+++.
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHH
Confidence 7631 1 2556788888866665544 34445543
No 350
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.18 E-value=2.1 Score=42.04 Aligned_cols=101 Identities=23% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc----ccCCCCCc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----EDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~~~~~~~ 144 (391)
...++.+||-.|+|. |.++..+|++ |++.|+++|.+ +-++.|++ .|.. .+... +. .++.....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCC
Confidence 345678888888875 6666666665 88767777887 55555554 3431 12211 11 11111246
Q ss_pred ccEEEEccccccc------cCcchHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+++-- .+.-. .........++...++++++|.++..
T Consensus 255 ~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 8988852 22110 00011123566666789999998753
No 351
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.71 E-value=3.2 Score=37.48 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=45.4
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEec-------------------h-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016314 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEA-------------------T-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~-------------------s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
....+|+-+|||. | ..+..+++.|..+++.+|. . .-++.+.+.+++.+..-+|+.+..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 3457899999994 4 3567788889988888853 2 234445555554433223566555
Q ss_pred ccccCC---CCCcccEEEE
Q 016314 135 SVEDIV---LPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~~---~~~~~D~Ivs 150 (391)
.+..-. +-..+|+||+
T Consensus 99 ~i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 99 RLDAENAEELIAGYDLVLD 117 (228)
T ss_pred eeCHHHHHHHHhCCCEEEE
Confidence 542211 1156999997
No 352
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.68 E-value=4.4 Score=36.16 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-------------------HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016314 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-------------------KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 78 ~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
+..+|+-+|||. | .++..+++.|..+++.+|.+ .-++.+.+++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 557899999995 4 46777888899889988875 12333444444433232355554444
Q ss_pred ccCC---CCCcccEEEE
Q 016314 137 EDIV---LPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~---~~~~~D~Ivs 150 (391)
.... +-..+|+||.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 3311 1157999985
No 353
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.56 E-value=7.7 Score=37.90 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=62.4
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEccccccccC
Q 016314 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~ 159 (391)
.||-++-.-|-++..++..+...+ .|.--.-...+++++.|++... ++++. ..+ ++++.+|+|+.-+ .-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~-~~~~~~d~vl~~~----PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLD--STA-DYPQQPGVVLIKV----PKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeec--ccc-cccCCCCEEEEEe----CCC
Confidence 689999999999999996654211 2322233456778899988643 44442 222 3457799998633 222
Q ss_pred cchHHHHHHHHhccccCCeEEE
Q 016314 160 ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 160 e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...+...+..+.+.|.||+.+|
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEE
Confidence 2456777888899999999976
No 354
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=83.37 E-value=6.4 Score=35.97 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=55.2
Q ss_pred hHhHHHHHHHHHh-cCCCCCCCEEEEECCcc--cH--HHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEE
Q 016314 60 RVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGS--GI--LAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 60 ~~r~~~~~~~i~~-~~~~~~~~~VLDlGcG~--G~--ls~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~~ 132 (391)
-..+....+.|.. .+....+.+||.+|+|+ |. -+..+.+--+. .++-.|+.+.+ . +.-..+
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------S-----Da~~~~ 109 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------S-----DADQSI 109 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEE
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------c-----ccCCce
Confidence 4445555566644 23334568999999986 32 23334443222 45555554321 1 223567
Q ss_pred EcccccCCCCCcccEEEEcccc--------ccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 133 EGSVEDIVLPEKVDVIISEWMG--------YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 133 ~~d~~~~~~~~~~D~Ivs~~~~--------~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+|.+.+.++.++|+|+|+.-. .....+.-...+..-++.-|+-||.+.+
T Consensus 110 ~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 110 VGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp ES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred eccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 7899998888999999998641 1122233355566666778899998764
No 355
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.80 E-value=2.7 Score=41.01 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHH
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~ 115 (391)
.++.+|+-+|+|. |..+...++ .|+ +|+++|.+ +-++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQ 205 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 3557799999984 665555444 487 69999998 54433
No 356
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.46 E-value=4.8 Score=35.48 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 016314 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 135 (391)
.+.+||-+|||. | ..+..++..|.++++.+|.. +. ++.+++.+++.+..-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999985 3 34566777899999999854 11 23344444444333235555544
Q ss_pred cccCC--CCCcccEEEEc
Q 016314 136 VEDIV--LPEKVDVIISE 151 (391)
Q Consensus 136 ~~~~~--~~~~~D~Ivs~ 151 (391)
+.+.. +-..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 43321 11689999973
No 357
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.45 E-value=0.31 Score=39.41 Aligned_cols=82 Identities=28% Similarity=0.338 Sum_probs=50.7
Q ss_pred cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCcccEEEEcccccccc
Q 016314 88 GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 88 G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~~D~Ivs~~~~~~l~ 158 (391)
|.|.++..+|++ | .+|+++|.+ .-++.+++ .|.. .++..+-.+ +.....+|+|+--. +
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-G---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESS-S----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEec-C----
Confidence 468888888887 7 589999999 66555543 4422 333322221 11124799998411 1
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016314 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
-...++....+|+++|.++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESST
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEcc
Confidence 134566677889999998865443
No 358
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.42 E-value=5.4 Score=32.34 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 142 (391)
+.+.|.+. ....+|+++|-|.=. .+..++++|. .|+++|+++. .+. .| +.++..|+.+..+.
T Consensus 4 ~a~~ia~~---~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARL---NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHH---S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHH
T ss_pred HHHHHHHh---CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHh
Confidence 44555543 234599999999743 5777888897 7999999932 122 22 78888998886544
Q ss_pred CcccEEEE
Q 016314 143 EKVDVIIS 150 (391)
Q Consensus 143 ~~~D~Ivs 150 (391)
+..|+|.|
T Consensus 69 ~~a~lIYS 76 (127)
T PF03686_consen 69 EGADLIYS 76 (127)
T ss_dssp TTEEEEEE
T ss_pred cCCcEEEE
Confidence 78999998
No 359
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=82.35 E-value=7.4 Score=33.30 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=57.7
Q ss_pred EECCcccHHHHHHHHc-C-CCeEEEEech---HHHHH---HHHHHHHcCCCCcEEEE-EcccccCC--C---CCcccEEE
Q 016314 84 DVGTGSGILAIWSAQA-G-ARKVYAVEAT---KMSDH---ARTLVKANNLQDVVEVI-EGSVEDIV--L---PEKVDVII 149 (391)
Q Consensus 84 DlGcG~G~ls~~~a~~-g-~~~V~avD~s---~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~--~---~~~~D~Iv 149 (391)
-||-|.=.++..+++. + ...++|.-.. +..+. +..+++...-.+ ++++ ..|+..+. . ..+||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEE
Confidence 3566666677777776 4 5567776554 22221 234443331112 3333 34666653 1 27899999
Q ss_pred Eccccccc----------cCcchHHHHHHHHhccccCCeEEEccc
Q 016314 150 SEWMGYFL----------LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l----------~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
-+...... .+...+..++..+.++|+++|.+.+..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 76532220 112346778888999999999887653
No 360
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.30 E-value=5.1 Score=38.48 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcC---------CCeEEEEech-HHHHHHHHHHHH
Q 016314 78 QGKTVLDVGTGSGILAIWSAQAG---------ARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g---------~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
....+++||.|+|.++..+.+.. +.++..||+| +....-+++.+.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44689999999999977665531 4589999999 666555555543
No 361
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=82.20 E-value=9.2 Score=36.77 Aligned_cols=94 Identities=26% Similarity=0.329 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCCccc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~D 146 (391)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ +....++ ..+....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3778888888753 5555555655 77679999877 5444333 34442211111111 11111125689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+... +. ...+....+.|+++|.++..
T Consensus 252 ~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEAS-GH--------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECC-CC--------hHHHHHHHHHhccCCEEEEE
Confidence 998521 11 12344555788999988743
No 362
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.91 E-value=3.4 Score=39.65 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=53.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCccc
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D 146 (391)
....++.+||-.|+|. |.++..+++. |+.+|++++.+ +..+.+++ .+....+.....+. .+......+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 3445678898888753 4555555555 77679999887 65555543 24321111111111 1111113599
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++-.. +. ...+....+.|+++|.++..
T Consensus 244 ~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 244 VSFDCA-GV--------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEEECC-CC--------HHHHHHHHHhccCCCEEEEE
Confidence 998521 10 12345556778999987743
No 363
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.89 E-value=9.1 Score=35.84 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=55.7
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN----------NL---------QDVVEVIEGSVE 137 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 137 (391)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899995 4 46677777887 79999999 7777665543321 11 0112221 1221
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. -...|+|+-.. .........++..+.+.++++.+++
T Consensus 82 ~---~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 15689888532 1121235677777888888887665
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.59 E-value=7 Score=36.55 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cC-CC--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NN-LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~~ 140 (391)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+.+.+.. .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3588899985 3 45666777787 69999999 777766543221 11 00 012222 222211
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
-...|+|+.-.. ........++..+.+.++++.++.....+
T Consensus 79 -~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 156899985321 11122345667777788888766554444
No 365
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.38 E-value=20 Score=34.49 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=53.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------C--C-------CeEEEEech--HHHHHHHHHHHH----cCCCC-cEEEEE
Q 016314 78 QGKTVLDVGTGSGILAIWSAQA--------G--A-------RKVYAVEAT--KMSDHARTLVKA----NNLQD-VVEVIE 133 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--------g--~-------~~V~avD~s--~~~~~a~~~~~~----~~~~~-~v~~~~ 133 (391)
+.-+|+|+||.+|..++.+... . . -+|+--|.- +.-...+..-.. ....+ -+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3368999999999887766432 0 0 157777753 332222211111 00111 033444
Q ss_pred cccccCCCC-CcccEEEEc----cccccc---cC-----------------------------cchHHHHHHHHhccccC
Q 016314 134 GSVEDIVLP-EKVDVIISE----WMGYFL---LR-----------------------------ESMFDSVICARDRWLKP 176 (391)
Q Consensus 134 ~d~~~~~~~-~~~D~Ivs~----~~~~~l---~~-----------------------------e~~~~~~l~~~~~~Lkp 176 (391)
+.+..--+| ++.|+++|- |+.... .. ..++..+|+.+.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 555543344 899999982 222110 00 12456778888889999
Q ss_pred CeEEEcc
Q 016314 177 TGVMYPS 183 (391)
Q Consensus 177 gG~~i~~ 183 (391)
||++++.
T Consensus 176 GG~mvl~ 182 (334)
T PF03492_consen 176 GGRMVLT 182 (334)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 9999865
No 366
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.34 E-value=9.9 Score=36.74 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEEc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~D~Ivs~ 151 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.... .+++.|.. .++. .+...+. ..+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~---~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDE---AINRLGAD---SFLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhh---HHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEE-
Confidence 4678898899875 6777777776 77 68888877 42221 12233432 1221 1111110 1135898884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+ . ...+....+.|+++|.++..
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEe
Confidence 222 1 12344556789999998743
No 367
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.29 E-value=12 Score=33.07 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=26.7
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016314 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s 110 (391)
.+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3557899999995 4 36777888898889888865
No 368
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=81.22 E-value=15 Score=30.44 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 66 YFNSIFQNKHHFQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
+.+++.+.....++++|+-+|||. | .++..+++.|...|+.+|.+ +..+...+...... +.....+..+. .
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~ 79 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--L 79 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--c
Confidence 445555543335678999999973 2 23333444554579999988 54433332222111 11122233222 2
Q ss_pred CcccEEEEcc
Q 016314 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+.+|+|++..
T Consensus 80 ~~~Dvvi~~~ 89 (155)
T cd01065 80 AEADLIINTT 89 (155)
T ss_pred ccCCEEEeCc
Confidence 6799999843
No 369
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=81.11 E-value=3.3 Score=39.48 Aligned_cols=94 Identities=23% Similarity=0.422 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~I 148 (391)
..++.+||..|+|. |..++.+|++ |..+|++++.+ ...+.+++ .+....+.....+. ......+.+|++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 44678888887753 5566666665 65578898777 55554443 23211111111111 111112569998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+.. .+. ...+....+.|+++|.++.
T Consensus 241 ld~-~g~--------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 241 IEA-VGF--------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEc-cCC--------HHHHHHHHHHhhcCCEEEE
Confidence 852 111 1245555678899998873
No 370
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.65 E-value=7.6 Score=36.36 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=59.0
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCCC---------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNLQ---------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~~---------~~v~~~~~d~~~~~ 140 (391)
.+|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+++.+.+ .+.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 346777788888 79999999 877776655332 1110 11222 2333222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcccc
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPSHA 185 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L-kpgG~~i~~~~ 185 (391)
...|+|+-.. .........++..+.+.+ +|+.++.-...
T Consensus 83 --~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 --ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred --CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5789988522 223334556777788888 77776654433
No 371
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.56 E-value=6.5 Score=34.26 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHH------------HHHHcCCCCcEEEEEcccccCCCCCcc
Q 016314 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHART------------LVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+|--+|.|- |+ ++..+|+.|. +|+|+|++ +.++..++ .+++..-..+..+. .|.... ....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--hhcc
Confidence 466778885 53 5677888887 79999999 65544321 11111001122222 222221 1457
Q ss_pred cEEEE-ccccccccCc---chHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIIS-EWMGYFLLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs-~~~~~~l~~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+++. -+........ ..+..+++.+.+.|+++..++..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 77654 2222222222 23667788888889997766654
No 372
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.13 E-value=12 Score=35.90 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=50.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+. .+.++..|+.+.. .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 467899999987664 4555677788 69999988 666655555555443 3777888886531 1
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
.+++|++|.+.
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 15789998854
No 373
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.02 E-value=10 Score=34.40 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++..|+.+..-
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999987664 4555667788 69999988 6555555544442223347888888876420
Q ss_pred CCcccEEEEc
Q 016314 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
-+.+|++|.+
T Consensus 84 ~g~id~li~~ 93 (260)
T PRK07063 84 FGPLDVLVNN 93 (260)
T ss_pred hCCCcEEEEC
Confidence 1468998874
No 374
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.01 E-value=5.1 Score=39.18 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=46.3
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEEEEcc
Q 016314 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~Ivs~~ 152 (391)
.+||-||||. |. .+..+|+.+..+|+..|.+ +.++.+..... .+++.++.|+.+.+ +-..+|+||+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4689999975 44 3455677776689999999 65544443321 14889998988763 225679999744
No 375
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.98 E-value=8.8 Score=36.81 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 446788999999975 6676666766 77 69999988 66665543
No 376
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.92 E-value=16 Score=34.09 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=58.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------CC-C--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------NL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~~-~--------~~v~~~~~d~~~~~ 140 (391)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+.+.+..+ +. . .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 5688899986 3 45666777787 79999999 7766654433221 21 1 113322 233222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
...|+|+.-. .........++..+...++++.+++-...+
T Consensus 82 --~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5789888622 111123456677788889998877644333
No 377
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.86 E-value=10 Score=35.47 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=55.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC---------CcEEEEEcccccC
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ---------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 139 (391)
.+|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.++.. .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 2 35666777777 79999999 7777766543211 110 123322 233221
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
-...|+|+.... ........++..+...++++.++..
T Consensus 82 --~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 --VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 156898886331 1112345667777777877775543
No 378
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.60 E-value=15 Score=36.28 Aligned_cols=85 Identities=25% Similarity=0.286 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..+++|+-+|+|. |......++. |+ +|+++|.+ .....|+ ..|. .+. ++.+. -...|+||+-.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l~~aDVVItaT- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--AKIGDIFITAT- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--HhcCCEEEECC-
Confidence 5789999999997 6655555554 77 79999988 3222222 2232 222 22222 14679988621
Q ss_pred cccccCcchHHHHHH-HHhccccCCeEEEcc
Q 016314 154 GYFLLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~-~~~~~LkpgG~~i~~ 183 (391)
+ . ..++. .....+|+|++++..
T Consensus 259 G-------~-~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 259 G-------N-KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred C-------C-HHHHHHHHHhcCCCCcEEEEE
Confidence 1 1 22333 356788999987754
No 379
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.52 E-value=15 Score=34.34 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016314 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++||-.|+..|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++..|+.+...
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4567899999876554 3444566687 68888877 5444444433322112348888999876520
Q ss_pred -CCcccEEEEcc
Q 016314 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 14689998754
No 380
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.45 E-value=18 Score=33.54 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=57.6
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHH-------HHcCC-C--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLV-------KANNL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~~ 140 (391)
.+|--||+|. +.++..+++.|. +|+++|.+ +.++.+++.+ .+.+. . .++++. .|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~-- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD-- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3577889985 456777778887 79999999 7766544322 22221 1 023322 23222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
-+..|+|+-.. .........++..+.+.++|+.++.-....
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 15689887522 111122357788888889998877544443
No 381
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.44 E-value=5.4 Score=38.14 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----C--CCCCcccE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----I--VLPEKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~~~~~~D~ 147 (391)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ +..+.+++ .+.. .++..+-.+ + ..++.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCcE
Confidence 3678888888764 5555556665 88789999887 65555533 3331 222221111 1 01236899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++... +. ...+....+.|+++|.++.
T Consensus 247 vid~~-g~--------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 247 VIDFV-NN--------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EEECC-CC--------HHHHHHHHHHhhcCCeEEE
Confidence 88521 10 1235555677899998874
No 382
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.42 E-value=11 Score=35.93 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=56.5
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHH-------HcCCC-----CcEEEEEcccccCCCCCc
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK-------ANNLQ-----DVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~-------~~~~~-----~~v~~~~~d~~~~~~~~~ 144 (391)
++|--||+|+ | .++..++.+|. +|+..|.+ +.++.+++.+. +.++. .++++.. ++.+. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcC
Confidence 5788999995 3 46677778888 79999999 76665554332 12211 1223221 22211 156
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
.|+|+-.. .........++..+.+.++|+.+|
T Consensus 84 aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 84 ADFIQESA----PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred CCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 89888532 222234567788888999998743
No 383
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.24 E-value=6 Score=38.37 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
....++.+||-.|+|. |.++..+|++ |+.+|+++|.+ +.++.|++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3456788999999875 6666667765 77679999998 66666544
No 384
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.76 E-value=8.1 Score=33.27 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016314 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
+|+-+|||. |. .+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899994 54 5677888899889988865
No 385
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=78.74 E-value=4.9 Score=32.97 Aligned_cols=71 Identities=27% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE
Q 016314 75 HHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs 150 (391)
...++++||-||+|- |. ....++..|+++|+.+.-+ +-++ +.++..+ ...++++.. .++. ...++|+|++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~---~l~~~~~-~~~~~~~~~--~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAE---ALAEEFG-GVNIEAIPL--EDLEEALQEADIVIN 81 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHH---HHHHHHT-GCSEEEEEG--GGHCHHHHTESEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHH---HHHHHcC-ccccceeeH--HHHHHHHhhCCeEEE
Confidence 356789999999985 33 3445666699889999888 4333 3322221 112555543 3332 1268999998
Q ss_pred c
Q 016314 151 E 151 (391)
Q Consensus 151 ~ 151 (391)
-
T Consensus 82 a 82 (135)
T PF01488_consen 82 A 82 (135)
T ss_dssp -
T ss_pred e
Confidence 3
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.70 E-value=8.8 Score=30.09 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=35.5
Q ss_pred EEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEE
Q 016314 83 LDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIIS 150 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~Ivs 150 (391)
+-+|+| .++..+++. +...|+.+|.+ +.++.+++ .+ +.++.+|..+.. .. +++|.|++
T Consensus 2 vI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 2 VIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp EEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEE
Confidence 445555 555544443 33479999999 65554443 22 689999988752 12 68898887
No 387
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.64 E-value=6.6 Score=37.48 Aligned_cols=96 Identities=27% Similarity=0.322 Sum_probs=53.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCC
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~ 143 (391)
....++.+||-.|+|. |..+..+|+. |++.|++++.+ +..+.+++. +....+.....+ +.+.....
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCC
Confidence 4456788888888765 5666666665 77558888877 655555432 322111111111 11121124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+|+|+... + . ...+....+.|+++|.++.
T Consensus 234 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 234 GPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 1 1 1234555678899998774
No 388
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.43 E-value=15 Score=36.41 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..+++|+-+|+|. |......++ .|+ +|+.+|.+ .....|. ..|. ++. ++.+. -..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~----~v~--~l~ea--l~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF----RVM--TMEEA--AELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC----Eec--CHHHH--HhCCCEEEECC-
Confidence 5789999999996 544433333 477 79999988 4322221 1232 222 23332 14689998622
Q ss_pred cccccCcchHHHHHH-HHhccccCCeEEEcc
Q 016314 154 GYFLLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~-~~~~~LkpgG~~i~~ 183 (391)
+ . ..++. .....+|+|++++-.
T Consensus 276 G-------~-~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 276 G-------N-KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred C-------C-HHHHHHHHHhcCCCCCEEEEc
Confidence 1 1 12333 456778999977643
No 389
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.42 E-value=5.8 Score=37.51 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=54.5
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC---CCCCc
Q 016314 73 NKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI---VLPEK 144 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~---~~~~~ 144 (391)
.....++.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.++ ..|....+..... +..+. ..++.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCCCC
Confidence 334567889999985 357777777776 77 69998887 5544443 3444221111111 11110 11246
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|+- ..+ . ..+....+.|+++|.++..
T Consensus 208 vdvv~d-~~G----~-----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 208 YDCYFD-NVG----G-----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred eEEEEE-CCC----H-----HHHHHHHHHhCcCcEEEEe
Confidence 898884 211 1 1234556789999998843
No 390
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.36 E-value=6.7 Score=37.94 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=52.4
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--cc----ccCCCCCc
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SV----EDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~----~~~~~~~~ 144 (391)
....++.+||-.|+|. |.++..+|++ |+..|++++.+ +..+.+++ .+....+..... +. .++. ++.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-~~~ 253 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-DGG 253 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-CCC
Confidence 3445678888888764 5555555665 77678999877 65555533 333211211111 11 1111 356
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhcccc-CCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLK-PTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~~i~ 182 (391)
+|+|+. ..+. ...+....+.|+ ++|.++.
T Consensus 254 ~d~vid-~~g~--------~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 254 VDYAFE-VIGS--------ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CcEEEE-CCCC--------HHHHHHHHHHhccCCCEEEE
Confidence 899884 1111 123444456678 9998874
No 391
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.87 E-value=7.3 Score=38.10 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=30.4
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016314 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
+++...++.+||-|.+| |..++.++-.++++|+|||+| ..+...
T Consensus 29 ~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred HHhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHH
Confidence 44556788999999544 444444455677799999999 544443
No 392
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.71 E-value=7.1 Score=37.13 Aligned_cols=93 Identities=26% Similarity=0.335 Sum_probs=52.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCcc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~ 145 (391)
...++.+||..|+|. |..+..+|+. |...|++++.+ ...+.++ ..+.. .++..+ +........+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~---~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGAD---DTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCC---EEecCccccHHHHHHHhCCCCC
Confidence 345678898888765 5555556665 77559998877 5544443 23332 222211 1111112459
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+++... + . ...+....+.|+++|.++..
T Consensus 229 d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 229 DLVIEAA-G----S----PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 9998521 1 1 12345556778999987743
No 393
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.61 E-value=4.2 Score=38.68 Aligned_cols=95 Identities=27% Similarity=0.330 Sum_probs=53.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCccc
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D 146 (391)
....++.+||..|+|. |..+..+|+. |. +|+++..+ +..+.+++ .+....+.....+. ........+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 3456778999998764 6666666666 76 68888777 65555533 23221111111111 1111124689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+++... + . ...+..+.+.|+++|.++.
T Consensus 230 ~vld~~-g----~----~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 230 VVIDAT-G----N----PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred EEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 998621 1 1 1234555678899998773
No 394
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.57 E-value=5.3 Score=38.22 Aligned_cols=96 Identities=27% Similarity=0.287 Sum_probs=55.8
Q ss_pred cCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCc
Q 016314 73 NKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEK 144 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~--G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~ 144 (391)
.....++.+||-.|+.. |.+++.+|++ |+ .++++-.+ +-.+. +++.|-...|.+...|+.+ +.....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 34456689999998544 6777778876 77 45555555 43333 3444544334444444332 222247
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|+.-. + ...+....+.|+++|.++..
T Consensus 212 vDvv~D~v-G---------~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 212 VDVVLDTV-G---------GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred ceEEEECC-C---------HHHHHHHHHHhccCCEEEEE
Confidence 99998621 1 23344556778999988743
No 395
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=77.50 E-value=6.1 Score=38.53 Aligned_cols=96 Identities=23% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---c----cccCCCCCc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---S----VEDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d----~~~~~~~~~ 144 (391)
...++.+||-.|+|. |..++.+|+. |+.+|++++.+ +..+.++ ..+....+..... + +.++.....
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHhcCCCC
Confidence 345678888888764 5555555655 77679999887 5333333 3444221111110 1 111221246
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|+.. .+ . ....+....+.|+++|.++.
T Consensus 276 vDvvld~-~g----~---~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 276 ADIQVEA-AG----A---PPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCEEEEC-CC----C---cHHHHHHHHHHHHcCCEEEE
Confidence 8998852 11 1 11234455677889999874
No 396
>PRK08589 short chain dehydrogenase; Validated
Probab=77.45 E-value=18 Score=33.18 Aligned_cols=73 Identities=26% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.++.++...+.++..+ .++.++..|+.+.. .-
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467899999988764 4555667788 7999988732332233333332 24788888887641 11
Q ss_pred CcccEEEEcc
Q 016314 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
++.|++|.+.
T Consensus 81 g~id~li~~A 90 (272)
T PRK08589 81 GRVDVLFNNA 90 (272)
T ss_pred CCcCEEEECC
Confidence 4689998854
No 397
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.24 E-value=12 Score=35.49 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=53.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCCCcccEEEEcc
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.+|+-+|+|. |.++..+++.|. .|+.++-+ +.++..++ .+|+. .....+..........+.+|+|+.-.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 3689999996 567888888887 69999987 44433332 22321 00011110011111125799887522
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
=.+ .+...+..+..++.++..+++-
T Consensus 79 K~~------~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 79 KAY------DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CHH------hHHHHHHHHHhhCCCCCEEEEE
Confidence 111 2456677788888888876654
No 398
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=77.22 E-value=2.7 Score=41.78 Aligned_cols=104 Identities=18% Similarity=0.078 Sum_probs=64.3
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----C----CCCCcccEE
Q 016314 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----I----VLPEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~----~~~~~~D~I 148 (391)
+..+|-+|-|.|.+..++... +..+++|||+. .|++.|.+......-. +..+.-.|-.+ . +-...||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 467899999999988776554 54589999999 9999998876322111 11111122111 1 112579999
Q ss_pred EEccccccccC------cchHHHHHHHHhccccCCeEEEcc
Q 016314 149 ISEWMGYFLLR------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+.=+.-.+. +-....++..++..|.|.|.+++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 87432111111 112356777889999999998654
No 399
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=77.04 E-value=14 Score=38.21 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCEEEEECCcccH--HHHHHHHcCCCeEEEEech-HH--HH---HHHHHHHHcCCCCcEEEEEcccc-cCC-CCCcccE
Q 016314 78 QGKTVLDVGTGSGI--LAIWSAQAGARKVYAVEAT-KM--SD---HARTLVKANNLQDVVEVIEGSVE-DIV-LPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~--ls~~~a~~g~~~V~avD~s-~~--~~---~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~D~ 147 (391)
+..+|+-||.|... +...++..|..++.++|.+ .. +. ...+.+++.+-.-.++.+..... ++. .-+.+|+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~Di 207 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADW 207 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcE
Confidence 45689999999843 3455677798899999765 21 11 22333444222212344432111 111 1178999
Q ss_pred EEE
Q 016314 148 IIS 150 (391)
Q Consensus 148 Ivs 150 (391)
|++
T Consensus 208 Vi~ 210 (637)
T TIGR03693 208 VLY 210 (637)
T ss_pred EEE
Confidence 998
No 400
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.02 E-value=44 Score=28.47 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-
Q 016314 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V- 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 140 (391)
+.+.+.+.+.. ..+.+|+-|||=+-...+.-......+++..|.+ ... .. .+. .|+.-|.... .
T Consensus 13 ~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~--~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QF--GGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hc--CCc-ceEECCCCChhhh
Confidence 34445555432 3457999999977444443312233479999988 422 11 111 3444454432 1
Q ss_pred ---CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016314 141 ---LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ---~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.+++|+||+++. + ..+..+..+...++.++++++.+|...+
T Consensus 80 ~~~l~~~~d~vv~DPP-F--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPP-F--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhhcCCCceEEEECCC-C--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 2379999999883 2 3445666777777778888888876544
No 401
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.06 E-value=5.3 Score=37.65 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C--CCCCccc
Q 016314 74 KHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I--VLPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~~~~~D 146 (391)
....++.+||-.|+ |.|.+++.+|+. |+ +|++++.+ +..+.+++ .|....+.....+..+ + ..+..+|
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 34567889998884 346677767776 77 69999887 55555543 4442211111112111 1 0124689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+. ..+ ...+....+.|+++|.++..
T Consensus 214 ~vld-~~g---------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFD-NVG---------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEE-CCC---------HHHHHHHHHhhccCCEEEEE
Confidence 8884 211 12345556788999998743
No 402
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.02 E-value=14 Score=33.34 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++..|+.+..-
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999987764 4555667788 69999988 65555555444433 347788888866420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14789998743
No 403
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.92 E-value=9.7 Score=34.81 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=25.9
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016314 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
....+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3567899999984 44 5667788898888888754
No 404
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.87 E-value=10 Score=35.66 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=43.9
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
+||-+|||. |. +...++..|.++++.+|.+ + -++.|.+.+++....-+|+....++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 488999983 43 5666778898889888753 1 123344444443333346677777665
Q ss_pred CC--CCCcccEEEE
Q 016314 139 IV--LPEKVDVIIS 150 (391)
Q Consensus 139 ~~--~~~~~D~Ivs 150 (391)
.. +-.+||+|++
T Consensus 81 ~~~~f~~~fdvVi~ 94 (291)
T cd01488 81 KDEEFYRQFNIIIC 94 (291)
T ss_pred hhHHHhcCCCEEEE
Confidence 42 2268999997
No 405
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=75.73 E-value=27 Score=32.69 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHH---HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-CCCcEEEEEcccc
Q 016314 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGIL---AIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-LQDVVEVIEGSVE 137 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~l---s~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~ 137 (391)
...+...+.+.....+++++|-+|+| |.- +..+++.|+++|+.++.+ +..+.+++.++... ....+.+...|+.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~ 188 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLN 188 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechh
Confidence 44555666544334567899999997 542 233456788789998876 32333333332210 0011334444544
Q ss_pred cCC----CCCcccEEEEcc
Q 016314 138 DIV----LPEKVDVIISEW 152 (391)
Q Consensus 138 ~~~----~~~~~D~Ivs~~ 152 (391)
+.. .-..+|+||...
T Consensus 189 ~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 189 DTEKLKAEIASSDILVNAT 207 (289)
T ss_pred hhhHHHhhhccCCEEEEeC
Confidence 321 114679998743
No 406
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=75.70 E-value=6.5 Score=37.98 Aligned_cols=92 Identities=25% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCcc
Q 016314 76 HFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~~ 145 (391)
..++.+||-.|+| .|.++..+++. |+.+|++++.+ +..+.+++ .+.. .++..+..+ ......+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCCCC
Confidence 3567788877765 35555555555 77559999887 55554432 3332 222222111 1112569
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+... + .. ..+....+.|+++|.++..
T Consensus 258 d~vld~v-g----~~----~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 258 DVVVEAL-G----KP----ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CEEEEeC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 9998521 1 11 1344556789999988743
No 407
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.69 E-value=17 Score=33.61 Aligned_cols=73 Identities=25% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
++++++|-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+. ++.++..|+.+..-
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567889999988764 4555666788 69889888 555444444443332 37888888876420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 14689998754
No 408
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=75.63 E-value=5.5 Score=38.33 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-cccc-C--CCCCcc
Q 016314 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVED-I--VLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~--~~~~~~ 145 (391)
....++.+||-.|+ | .|.++..+|++ |+ +|++++.+ +..+.+++ ..|....+..... +..+ + ..++.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34567899999998 3 57777777776 77 69999887 55444432 2344321211111 2211 1 012468
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+- ..+ ...+....+.|+++|.++..
T Consensus 230 D~v~d-~vG---------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYFD-NVG---------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEEE-CCC---------HHHHHHHHHHhccCCEEEEE
Confidence 98884 212 12345556779999998743
No 409
>PLN02494 adenosylhomocysteinase
Probab=75.44 E-value=12 Score=37.60 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=53.3
Q ss_pred HHHHHhcCC-CCCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016314 67 FNSIFQNKH-HFQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 67 ~~~i~~~~~-~~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
.+.|.+.-. ...+++|+-+|+|. |......++ .|+ +|+++|.+ .-...|. ..+. .+. ++.+. -
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~----~vv--~leEa--l 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY----QVL--TLEDV--V 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC----eec--cHHHH--H
Confidence 344444422 25789999999996 554444444 477 79999988 3222222 2232 222 23222 1
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...|+|++.. + ....+.......+|+|++++-.
T Consensus 308 ~~ADVVI~tT-G-------t~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 308 SEADIFVTTT-G-------NKDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred hhCCEEEECC-C-------CccchHHHHHhcCCCCCEEEEc
Confidence 4689998621 1 1112224455679999988754
No 410
>PRK08223 hypothetical protein; Validated
Probab=75.43 E-value=11 Score=35.37 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEc
Q 016314 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
.++.+||-+|||- | ..+..++++|..+++.+|.+ +. ++.|++.+++.+-.-+|+.+..
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 3567899999994 4 46788899998888887753 21 2334444443332223555554
Q ss_pred ccccCC---CCCcccEEEE
Q 016314 135 SVEDIV---LPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~~---~~~~~D~Ivs 150 (391)
.+..-. +-..+|+|+.
T Consensus 105 ~l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVD 123 (287)
T ss_pred ccCccCHHHHHhCCCEEEE
Confidence 443321 1157999984
No 411
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.41 E-value=7.8 Score=37.38 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---c----ccCCCCCc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---V----EDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~----~~~~~~~~ 144 (391)
...++.+||-.|+|. |..+..+++. |+.+|++++.+ ...+.++ ..+.. .++..+ . ..+.....
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~g~~---~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RFGAT---HTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HhCCe---EEeCCCCccHHHHHHHHcCCCC
Confidence 345678888888753 5555556665 77569998887 5444443 23332 222221 1 11111256
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+++... + . ...+....+.|+++|.++.
T Consensus 252 vd~vld~~-~----~----~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 252 ADYAFEAV-G----R----AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCEEEEcC-C----C----hHHHHHHHHHhhcCCeEEE
Confidence 89888521 1 0 1234556677899998874
No 412
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.29 E-value=13 Score=39.78 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=63.9
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CC--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~ 140 (391)
++|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+++.+..+ + +. .+|++- .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 346777888888 79999999 8877766555321 1 10 123222 122111
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
...|+||=.. .........++.++.++++|+.+|.-+..++-
T Consensus 391 --~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~ 432 (714)
T TIGR02437 391 --DNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTIS 432 (714)
T ss_pred --cCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 5789988422 22223467889999999999987665444433
No 413
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.17 E-value=17 Score=33.43 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------CCc
Q 016314 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------PEK 144 (391)
Q Consensus 79 ~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~~ 144 (391)
++++|-.|+..|+ ++..+++.|+ +|++++.+ +.++...+.....+...++.++.+|+.+... -++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 5678999976553 3444566687 69999877 5444444444443444458899999877421 046
Q ss_pred ccEEEEc
Q 016314 145 VDVIISE 151 (391)
Q Consensus 145 ~D~Ivs~ 151 (391)
+|+|+..
T Consensus 82 id~vv~~ 88 (280)
T PRK06914 82 IDLLVNN 88 (280)
T ss_pred eeEEEEC
Confidence 7888874
No 414
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.07 E-value=14 Score=33.88 Aligned_cols=93 Identities=30% Similarity=0.328 Sum_probs=52.8
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
....++.+||-.|+|. |..+..+|++ |.++|++++.+ +..+.+++. +..+.+ +... ........+|+|+.
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~~~~~~d~vl~ 165 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEIGGRGADVVIE 165 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhhcCCCCCEEEE
Confidence 3455778898888875 6666666665 76459999988 665555542 311111 1110 01111256899985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. +. ...+....+.|+++|.++.
T Consensus 166 ~~-~~--------~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 AS-GS--------PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cc-CC--------hHHHHHHHHHhcCCcEEEE
Confidence 21 10 1234455667899998873
No 415
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.05 E-value=17 Score=33.25 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+.... ..++.++..|+.+..- -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 467899999988765 4566777788 69999988 55554444443221 2247888888876420 1
Q ss_pred CcccEEEEcc
Q 016314 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|+++.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4689888743
No 416
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=74.95 E-value=14 Score=30.36 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
+||-+|||. |. ++..+++.|..+++.+|.+ .-++.+++.+++....-+++.+...+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 478899984 54 5677888898889888743 1223334444443322234455444333
Q ss_pred C---CCCCcccEEEE
Q 016314 139 I---VLPEKVDVIIS 150 (391)
Q Consensus 139 ~---~~~~~~D~Ivs 150 (391)
. .+-.++|+|++
T Consensus 81 ~~~~~~~~~~diVi~ 95 (143)
T cd01483 81 DNLDDFLDGVDLVID 95 (143)
T ss_pred hhHHHHhcCCCEEEE
Confidence 2 12267999987
No 417
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.64 E-value=8.2 Score=36.75 Aligned_cols=94 Identities=23% Similarity=0.314 Sum_probs=51.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~I 148 (391)
..++.+||-.|+|. |..+..+++. |..+|++++.+ .....+++ .+....+.....+. ..+.....+|++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVV 239 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEE
Confidence 45677888788753 4444555554 74579999887 54444442 34322122221121 111122469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+... + . ...+..+.+.|+++|.++.
T Consensus 240 ld~~-g-------~-~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 240 IEAV-G-------I-PATFELCQELVAPGGHIAN 264 (345)
T ss_pred EECC-C-------C-HHHHHHHHHhccCCcEEEE
Confidence 8521 1 1 1235556678999999874
No 418
>PRK07035 short chain dehydrogenase; Provisional
Probab=74.62 E-value=17 Score=32.67 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=48.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|+++|+ ++..+++.|+ +|++++.+ +.++...+.+...+ ..+.++..|+.+..-
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457889999988875 4555666788 79999988 65554444444333 236778888765420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+++...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 14689988743
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.61 E-value=22 Score=33.49 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCCCCEEEEECCcc-cHHHHH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCCCCCcccEEEEc
Q 016314 76 HFQGKTVLDVGTGS-GILAIW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~D~Ivs~ 151 (391)
...+++|+-||+|. |..... +...|+ +|+++|.+ .....+ ...+. +++. .++.+. -..+|+|+.-
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~----~~~G~----~~~~~~~l~~~--l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI----TEMGL----SPFHLSELAEE--VGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH----HHcCC----eeecHHHHHHH--hCCCCEEEEC
Confidence 34689999999986 443333 344587 89999998 533332 33332 2221 111111 1579999973
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. .. ..+-+.....++|++.++
T Consensus 218 ~-p~--------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 218 I-PA--------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred C-Ch--------hhhhHHHHHcCCCCcEEE
Confidence 2 11 112233445678888766
No 420
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=74.58 E-value=4.3 Score=40.36 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCCCCEEEEECCcc-cHH-HHHHHHcCCCeEE-----EEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016314 76 HFQGKTVLDVGTGS-GIL-AIWSAQAGARKVY-----AVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~l-s~~~a~~g~~~V~-----avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
..++++|+-||||+ |.. ++-+...|...++ +||.+ +. .+++...|+. + .++.+. -.+.|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s----~~kA~~dGF~----v--~~~~Ea--~~~ADv 100 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRAS----WRKATENGFK----V--GTYEEL--IPQADL 100 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccch----HHHHHhcCCc----c--CCHHHH--HHhCCE
Confidence 35789999999997 441 1111222443222 33333 22 2334444542 1 233332 167999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
|+.-. ..+ ....+.+.+...||||..+.+++.-.
T Consensus 101 VviLl-----PDt-~q~~v~~~i~p~LK~Ga~L~fsHGFn 134 (487)
T PRK05225 101 VINLT-----PDK-QHSDVVRAVQPLMKQGAALGYSHGFN 134 (487)
T ss_pred EEEcC-----ChH-HHHHHHHHHHhhCCCCCEEEecCCce
Confidence 98722 112 23455578889999999998876643
No 421
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.57 E-value=9.7 Score=35.93 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=77.5
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccc
Q 016314 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSV 136 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 136 (391)
..|...+-+.+...+... -..|+-||||-=.-+-.+-. +. .+|+=+|.-++++.-++.++..+.. ..++++..|+
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 345555556666655433 47899999994222211111 22 2566666657888777777776632 2589999999
Q ss_pred ccCCC----------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016314 137 EDIVL----------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~~~----------~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++-.. +..--++++|.+..++..+ ....++..+..++.||-.++...
T Consensus 153 ~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~-~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 153 REDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEE-AVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cccchHHHHHhcCCCcCCCeEEEeccccccCCHH-HHHHHHHHHHHhCCCCceEEEec
Confidence 84321 2455678888876666554 57788999988888887766554
No 422
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.37 E-value=18 Score=32.96 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+....-..++.++..|+.+.. .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988764 4555666788 69999988 555544444433221224778888887642 0
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 14689988743
No 423
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.15 E-value=19 Score=32.48 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C---
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L--- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.++..+ .++.++.+|+.+.. .
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999987654 3445666687 69999988 55554444444433 34888889887641 0
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+|+...
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 14679999754
No 424
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.15 E-value=12 Score=38.53 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCCCCCCEEEEECCcccHHH----HHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-------CCcEEEEEcccccCCC
Q 016314 74 KHHFQGKTVLDVGTGSGILA----IWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls----~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-------~~~v~~~~~d~~~~~~ 141 (391)
.....+++||-.|+. |.++ ..+++.|+ +|+++..+ +-+....+.+....+ ..++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred cccCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 344567889988874 3333 33455577 69998887 544333332222111 1348899999987431
Q ss_pred ----CCcccEEEEc
Q 016314 142 ----PEKVDVIISE 151 (391)
Q Consensus 142 ----~~~~D~Ivs~ 151 (391)
-+.+|+||+.
T Consensus 153 I~~aLggiDiVVn~ 166 (576)
T PLN03209 153 IGPALGNASVVICC 166 (576)
T ss_pred HHHHhcCCCEEEEc
Confidence 1578998874
No 425
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.06 E-value=18 Score=32.38 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+. .+..+..|+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999986 5666777888 69999888 666555555544432 3566666765431
Q ss_pred CCCcccEEEEcc
Q 016314 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
+...+|+++.+.
T Consensus 80 ~g~~iD~li~na 91 (227)
T PRK08862 80 FNRAPDVLVNNW 91 (227)
T ss_pred hCCCCCEEEECC
Confidence 112789988854
No 426
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.05 E-value=23 Score=33.35 Aligned_cols=93 Identities=24% Similarity=0.269 Sum_probs=53.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----CCCCCcc
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----IVLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~ 145 (391)
....++.+||.+|+|. |..+..+++. |.++|++++.+ +..+.+++ .+.. .++..+-.+ ....+.+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCC
Confidence 3456778999998753 5555555655 66558888888 66555533 2322 222222111 1122579
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+++... + . ...+....+.|+++|.++.
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 9998521 1 0 1345555677899998874
No 427
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.97 E-value=5 Score=38.26 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=51.0
Q ss_pred CEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc----cCCCCCcccEEEEc
Q 016314 80 KTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE----DIVLPEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~D~Ivs~ 151 (391)
.+||-.|+ |.|..+..+|++ |+.+|++++.+ +..+.+++. .|....+.....++. ++. +..+|+|+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-~~gvd~vid- 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-PEGVDVYFD- 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-CCCceEEEE-
Confidence 78999986 357777777776 77579999887 544444432 343221111111111 111 246899984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
..+. . .+....+.|+++|.++.
T Consensus 231 ~~g~--------~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 231 NVGG--------E-ISDTVISQMNENSHIIL 252 (345)
T ss_pred CCCc--------H-HHHHHHHHhccCCEEEE
Confidence 2121 1 13445577999999874
No 428
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.79 E-value=5 Score=39.81 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=49.1
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 016314 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 135 (391)
++.+||-+|||- |. |...++..|..+|..||.. +. +..|++.+++..-.-++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 567899999984 54 4555666788888887753 21 33455555554433348888899
Q ss_pred cccCCCC----CcccEEEE
Q 016314 136 VEDIVLP----EKVDVIIS 150 (391)
Q Consensus 136 ~~~~~~~----~~~D~Ivs 150 (391)
+.+..++ ++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 8887554 67898875
No 429
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.58 E-value=11 Score=36.40 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEc
Q 016314 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
.++.+||-+|||. |. .+..++..|..+++.+|.+ ..++.|++.+++.+-.-+|+.+..
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3567899999995 43 5677888899888888754 123445555554433333555554
Q ss_pred ccccC---CCCCcccEEEE
Q 016314 135 SVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~---~~~~~~D~Ivs 150 (391)
.+..- .+-..+|+|+.
T Consensus 106 ~i~~~~~~~~~~~~DvVvd 124 (355)
T PRK05597 106 RLTWSNALDELRDADVILD 124 (355)
T ss_pred ecCHHHHHHHHhCCCEEEE
Confidence 44321 12267999997
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.37 E-value=17 Score=38.83 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=63.9
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CC--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~ 140 (391)
++|.-||+|+ ..++..+|.+|. .|+.+|.+ +.++.+++.+... + +. .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999998 346777888898 79999999 8877766554321 1 11 123332 232222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
...|+||=. ..........++..+.++++|+.+|.-+..++
T Consensus 391 --~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 --ERVDVVVEA----VVENPKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred --cCCCEEEec----ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 578988842 22222346788999999999998765544443
No 431
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.35 E-value=20 Score=32.30 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=47.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+..-
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 567899999976654 3444566688 79999988 65555544444443 337888888766420
Q ss_pred CCcccEEEEc
Q 016314 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
-+++|.++..
T Consensus 86 ~~~id~vi~~ 95 (256)
T PRK06124 86 HGRLDILVNN 95 (256)
T ss_pred cCCCCEEEEC
Confidence 1467888874
No 432
>PRK06128 oxidoreductase; Provisional
Probab=73.30 E-value=40 Score=31.43 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=44.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H--HHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K--MSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
.++++||-.|+..|+ ++..+++.|+ +|+.+..+ . ..+...+.++..+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 467899999976654 4555666788 57766543 2 2222333333333 347788889876420
Q ss_pred --CCcccEEEEcc
Q 016314 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 130 ~~~g~iD~lV~nA 142 (300)
T PRK06128 130 KELGGLDILVNIA 142 (300)
T ss_pred HHhCCCCEEEECC
Confidence 14689999754
No 433
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.09 E-value=9.6 Score=36.30 Aligned_cols=93 Identities=29% Similarity=0.329 Sum_probs=49.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc---ccCCCCCcccEEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV---EDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~D~Ivs 150 (391)
.++.+||-.|+|. |.++..+++. |..+|++++.+ +-.+.++ ..+....+.....+. .++...+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 4677888888754 5566666665 66568888665 4333333 233321111111111 12222257999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. + . ........+.|+++|.++.
T Consensus 238 ~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 238 MS-G----N----PKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CC-C----C----HHHHHHHHHHhccCCEEEE
Confidence 22 1 0 1234445577899998764
No 434
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=73.04 E-value=9.3 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCCCccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016314 326 NGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 326 ~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
+..+| |.+++|++|+.|.+||.|..+..+....+
T Consensus 73 ~dfn~-Q~~y~l~~~v~i~~GD~l~~~C~Ydns~~ 106 (156)
T PF03712_consen 73 YDFNW-QEFYPLKEPVTIPPGDTLRTECTYDNSDR 106 (156)
T ss_dssp TS-----S-EEEEEEEEE-TT-EEEEEEEEE-TT-
T ss_pred CCCcc-ceeEECCCceEecCCCEEEEEEEEeCCCC
Confidence 34566 77899999999999999999998876543
No 435
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.81 E-value=29 Score=32.48 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=57.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHH-------HcCC-C--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK-------ANNL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~-------~~~~-~--------~~v~~~~~d~~~~~ 140 (391)
++|--||+|. | .++..++++|. +|+++|.+ +.++.+++.+. +.+. . ..+.+ ..+...+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 4688899985 3 45666777786 79999999 77665544332 1111 0 01111 2222221
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
...|+|+.-. .........++..+...++++.+++-...++
T Consensus 82 --~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 82 --RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred --CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 5689988522 2222345567777778888888665444443
No 436
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.77 E-value=21 Score=33.41 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=51.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 142 (391)
..+++||-=||-+|+ ++..++++|++ ++-+-.. .-++...+.+++.+-.+++.++++|+.+.+. .
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 467899999999986 67778888985 5544444 5455543333333333369999999988631 1
Q ss_pred -CcccEEEEcc
Q 016314 143 -EKVDVIISEW 152 (391)
Q Consensus 143 -~~~D~Ivs~~ 152 (391)
+..|++|.+.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 7899999864
No 437
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.76 E-value=19 Score=38.38 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=62.7
Q ss_pred CEEEEECCcc-c-HHHHHHH-HcCCCeEEEEech-HHHHHHHHHHHHc-------C-CC--------CcEEEEEcccccC
Q 016314 80 KTVLDVGTGS-G-ILAIWSA-QAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQ--------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~ 139 (391)
++|.-||+|+ | .++..++ .+|. .|+.+|.+ +.++.+++++... + +. .+|++. .|...+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 6799999997 3 4566666 6787 79999999 8777766554321 1 11 123333 122211
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016314 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
...|+|+=. ..........++..+.++++|+.+|.-+..++
T Consensus 388 ---~~aDlViEa----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l 428 (708)
T PRK11154 388 ---KHADVVIEA----VFEDLALKQQMVAEVEQNCAPHTIFASNTSSL 428 (708)
T ss_pred ---ccCCEEeec----ccccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 578988842 22222346788999999999998776444443
No 438
>PRK08324 short chain dehydrogenase; Validated
Probab=72.71 E-value=27 Score=37.04 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=45.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L------ 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~------ 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+... ..+.++..|+.+.. +
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999975543 3444556688 79999998 5554444333221 34888888886642 0
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+.+|+||...
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 14689998743
No 439
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.54 E-value=13 Score=30.68 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=50.4
Q ss_pred EEEECCcc-cH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcc---------cccCC--CCCcccEE
Q 016314 82 VLDVGTGS-GI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGS---------VEDIV--LPEKVDVI 148 (391)
Q Consensus 82 VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d---------~~~~~--~~~~~D~I 148 (391)
|+-+|+|. |. ++..+++.|. +|+.+..+..++. .+..+ +++...+ ..... ...++|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 56788886 43 4566667677 7999998752221 33333 2332222 01111 12689998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+.-.=. .....+++.+.+++.++..+++
T Consensus 72 iv~vKa------~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAVKA------YQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-SSG------GGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEecc------cchHHHHHHHhhccCCCcEEEE
Confidence 862211 1356788889999999976654
No 440
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.50 E-value=66 Score=28.69 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=55.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.+++++|-.|+..|+ +...+++.|. +|+++..+ . ..+...+..+..+ .++.++.+|+.+...
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 456889999975543 3344455677 68887765 2 3333333333322 337888889876421
Q ss_pred -CCcccEEEEccccccc---cCc-------chHHHHHHHHhccccCCeEEEcc
Q 016314 142 -PEKVDVIISEWMGYFL---LRE-------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivs~~~~~~l---~~e-------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-+.+|+++...-.... ..+ .....+++.+.+.++.+|.++..
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0368988864311100 000 01234556666666666666543
No 441
>PRK09242 tropinone reductase; Provisional
Probab=72.44 E-value=22 Score=32.13 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+......-..++.++.+|+.+.. .
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999987654 4555666788 69999888 655544444433311234788888886631 0
Q ss_pred CCcccEEEEc
Q 016314 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
-+++|+|+..
T Consensus 86 ~g~id~li~~ 95 (257)
T PRK09242 86 WDGLHILVNN 95 (257)
T ss_pred cCCCCEEEEC
Confidence 1468998874
No 442
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.19 E-value=23 Score=33.36 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=52.0
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCC----------CCcEEEEEcccccCCCCCcc
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNL----------QDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~----------~~~v~~~~~d~~~~~~~~~~ 145 (391)
++|.-||+|. +.++..+++.|. +|+++|.+ +.++.+++.+.. .+. ..++++ ..|..+. -...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--~~~a 80 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA--VSGA 80 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH--hccC
Confidence 4688899986 345666777777 79999998 766666553221 110 011222 1222221 1468
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
|+|+.-. .........++..+..+++++.+++
T Consensus 81 DlVi~av----~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 81 DLVIEAV----PEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CEEEEec----cCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 9888522 1111234566777777777765544
No 443
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=72.01 E-value=14 Score=39.53 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=64.4
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC--------CcEEEEEcccccCC
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~--------~~v~~~~~d~~~~~ 140 (391)
++|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+.+.+..+ .+. .++++. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 346777788888 69999999 8887776655431 111 123322 122222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016314 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
...|+||= ...........++..+.++++|+.++.-+..++-
T Consensus 413 --~~aDlViE----Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 454 (737)
T TIGR02441 413 --KNADMVIE----AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALP 454 (737)
T ss_pred --ccCCeehh----hccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 57888873 2222334467889999999999987765544433
No 444
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=72.00 E-value=36 Score=31.57 Aligned_cols=76 Identities=26% Similarity=0.321 Sum_probs=55.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCC----------
Q 016314 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~---------- 140 (391)
.+.++++|--|..+|+ .+..+++.|+ +|+.++.+ +.++...+.....+. ..++..+.+|+.+.+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 4678999999998885 5678888999 69999988 766666555554444 345788888886531
Q ss_pred --CCCcccEEEEcc
Q 016314 141 --LPEKVDVIISEW 152 (391)
Q Consensus 141 --~~~~~D~Ivs~~ 152 (391)
+-++.|+++.+.
T Consensus 84 ~~~~GkidiLvnna 97 (270)
T KOG0725|consen 84 EKFFGKIDILVNNA 97 (270)
T ss_pred HHhCCCCCEEEEcC
Confidence 136899999854
No 445
>PRK06194 hypothetical protein; Provisional
Probab=71.99 E-value=23 Score=32.64 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=46.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.+|.+ +.++...+.+...+ .++.++.+|+.+...
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789988876553 3455666787 69999987 55544444333333 237889999876420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+|+...
T Consensus 81 ~g~id~vi~~A 91 (287)
T PRK06194 81 FGAVHLLFNNA 91 (287)
T ss_pred cCCCCEEEECC
Confidence 13579998843
No 446
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=71.71 E-value=30 Score=33.69 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HH-HHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KM-SDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~D~Ivs 150 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +. .+.+ +..|.. .++. .+...+. ....+|+|+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a----~~lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAI----DRLGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHH----HhCCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 4678899999874 6666667766 77 69999876 42 2333 334442 1221 1111110 1135888874
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
- .+ . ...+....+.|+++|.++..
T Consensus 249 ~-~G----~----~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 249 T-VS----A----EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C-CC----c----HHHHHHHHHhhcCCCEEEEE
Confidence 1 11 1 12344455778999998743
No 447
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=71.66 E-value=45 Score=31.14 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
....+...+.......++++|+-||||- |. ....+++.|+++|+.++.+ +-++...+.+.... .. +.+... .+
T Consensus 110 D~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~-~~-~~~~~~--~~ 185 (284)
T PRK12549 110 DWSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF-PA-ARATAG--SD 185 (284)
T ss_pred CHHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC-CC-eEEEec--cc
Confidence 3455666665543345678999999995 33 3344556788889999998 54433333332211 11 333221 11
Q ss_pred CC-CCCcccEEEEc
Q 016314 139 IV-LPEKVDVIISE 151 (391)
Q Consensus 139 ~~-~~~~~D~Ivs~ 151 (391)
+. ....+|+||.-
T Consensus 186 ~~~~~~~aDiVIna 199 (284)
T PRK12549 186 LAAALAAADGLVHA 199 (284)
T ss_pred hHhhhCCCCEEEEC
Confidence 11 11568999873
No 448
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=71.23 E-value=3.6 Score=33.38 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.2
Q ss_pred EEEEEcccccC--CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 129 VEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~~~~d~~~~--~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+++..+|+++. .+...+|+|.-+.+...-..+---..++..+.++++|||++.-
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 67778888663 2337899999877554333332346789999999999998763
No 449
>PRK08328 hypothetical protein; Provisional
Probab=71.22 E-value=17 Score=32.90 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=25.7
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEec
Q 016314 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEA 109 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~ 109 (391)
.+.+||-+|||. |. .+..+++.|..+++.+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999994 54 567788889999999984
No 450
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=71.20 E-value=4.6 Score=39.98 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHH--c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCC----CCccc
Q 016314 76 HFQGKTVLDVGTGSGILAIWSAQ--A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVL----PEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~--~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~----~~~~D 146 (391)
.+....++|+|.|.|.-.-.+.. . ....++.||.| .|...+.+..+. +-...-.++.. -+.+..+ .+.||
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCccccee
Confidence 34556788888886643322222 2 24578999999 998888776654 11100111111 1222211 25699
Q ss_pred EEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 147 VIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|.- +......+.-+.....-+.+..++|+.+++
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 999832 222222222233334445667788887653
No 451
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=71.13 E-value=20 Score=29.78 Aligned_cols=70 Identities=31% Similarity=0.319 Sum_probs=47.5
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCeEEEEech---HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016314 80 KTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT---KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 80 ~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 142 (391)
++||-.|+++|+ ++..+++.|+.+|+.+..+ +.++...+..+..+ .++.+++.|+.+.. ..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 468889988774 4666777777788888876 34444444444444 45999999976642 11
Q ss_pred CcccEEEEc
Q 016314 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivs~ 151 (391)
.++|++|+.
T Consensus 79 ~~ld~li~~ 87 (167)
T PF00106_consen 79 GPLDILINN 87 (167)
T ss_dssp SSESEEEEE
T ss_pred ccccccccc
Confidence 579999974
No 452
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=71.13 E-value=25 Score=31.86 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=47.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|+..|+ ++..+++.|+ +|+.++.+ +-++...+.+...+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999965443 2344455587 79999988 66655555554433 347888999876421
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|.|+...
T Consensus 87 ~~~id~vi~~a 97 (259)
T PRK08213 87 FGHVDILVNNA 97 (259)
T ss_pred hCCCCEEEECC
Confidence 14689988743
No 453
>PRK08703 short chain dehydrogenase; Provisional
Probab=71.10 E-value=33 Score=30.53 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.+...+- ..+.++..|+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~ 66 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLM 66 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeec
Confidence 457899999976553 3445566677 69999988 555444444433221 12455566654
No 454
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.75 E-value=22 Score=32.01 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------CC
Q 016314 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------PE 143 (391)
Q Consensus 79 ~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 143 (391)
++++|-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+.+...+ .++.++..|+.+... -+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678989987764 3455666788 79999988 55555544444332 348888888865310 14
Q ss_pred cccEEEEcc
Q 016314 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivs~~ 152 (391)
+.|++|...
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689988743
No 455
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.75 E-value=23 Score=34.07 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcc
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~ 152 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +....+. +..|... .+...+...+. ....+|+++--
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~---~~~Ga~~--~i~~~~~~~~~~~~~~~D~vid~- 251 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEAL---EHLGADD--YLVSSDAAEMQEAADSLDYIIDT- 251 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH---HhcCCcE--EecCCChHHHHHhcCCCcEEEEC-
Confidence 4678888888764 6666666766 76 58888776 4333332 2344321 11111111110 11358888741
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ . ...+....+.|+++|.++..
T Consensus 252 ~g----~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 252 VP----V----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CC----c----hHHHHHHHHHhccCCEEEEE
Confidence 11 1 12344455678999988754
No 456
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.67 E-value=30 Score=32.60 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H----------HHHHHHHHHHHcCCCCcEEEEEcccccCC--
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K----------MSDHARTLVKANNLQDVVEVIEGSVEDIV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~----------~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ . .++.+.+.+...+ .++.++..|+.+..
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHH
Confidence 567899999998775 3555666788 68888764 1 2222333333333 33677888887642
Q ss_pred ---------CCCcccEEEEcc
Q 016314 141 ---------LPEKVDVIISEW 152 (391)
Q Consensus 141 ---------~~~~~D~Ivs~~ 152 (391)
.-+++|++|.+.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 015789999864
No 457
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.20 E-value=38 Score=32.18 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=53.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
..+++++--|+-+|+ .+..+|.+|+ +|+-.--+ +..+.+.+.+.......++.+++.|+.++. .
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 456788888988875 3566778896 67777666 666666666666444556899999987762 1
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
..+.|++|.+.
T Consensus 112 ~~~ldvLInNA 122 (314)
T KOG1208|consen 112 EGPLDVLINNA 122 (314)
T ss_pred CCCccEEEeCc
Confidence 26789998753
No 458
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=70.14 E-value=30 Score=31.03 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=44.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016314 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
..++++||-.|+..|+ ++..+++.|+ +|++++.+ +.++...+.+...+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 3567899999975543 2344555677 79999988 555444444444332 23667777764221
Q ss_pred --CCCcccEEEEc
Q 016314 141 --LPEKVDVIISE 151 (391)
Q Consensus 141 --~~~~~D~Ivs~ 151 (391)
.-+++|.||..
T Consensus 87 ~~~~~~id~vi~~ 99 (247)
T PRK08945 87 EEQFGRLDGVLHN 99 (247)
T ss_pred HHHhCCCCEEEEC
Confidence 01468888874
No 459
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.09 E-value=21 Score=27.34 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016314 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~ 151 (391)
++|| +-||+|.-+-.+++ ..++.++++|++ +++...+..++.. ...+|+|+.-
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC
Confidence 4566 45888876655543 345556777876 7888888766532 2678999873
No 460
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=70.00 E-value=13 Score=35.15 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=50.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCccc
Q 016314 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~D 146 (391)
..++.+||-.|+|. |.+...+++. |..+|++++.+ +..+.++ ..+.. .++..+ +..+.....+|
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGAD---HVLNASDDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCc---EEEcCCccHHHHHHHHhCCCCCC
Confidence 34678899998664 4444555554 63479988877 5444443 33432 122211 11122124699
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+... + . ...+....+.|+++|.++.
T Consensus 238 vvld~~-g----~----~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 238 AVIDFV-G----S----DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred EEEEcC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 998521 1 0 1234555677899998874
No 461
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.93 E-value=25 Score=32.79 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=47.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.....+ ..+.++..|+.+...
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356889999987664 3445566677 79999988 65555444443333 237788888876420
Q ss_pred CCcccEEEEc
Q 016314 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
-+.+|+++..
T Consensus 115 ~g~id~li~~ 124 (293)
T PRK05866 115 IGGVDILINN 124 (293)
T ss_pred cCCCCEEEEC
Confidence 1478999874
No 462
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=69.91 E-value=12 Score=31.79 Aligned_cols=91 Identities=27% Similarity=0.360 Sum_probs=48.3
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016314 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++++|.-||.|+ |. .++-+.+.|..-+++..... ...++++..|+. + .++.+.- ...|+|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s---~s~~~A~~~Gf~----v--~~~~eAv--~~aDvV~~----- 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGS---ASWEKAKADGFE----V--MSVAEAV--KKADVVML----- 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTC---HHHHHHHHTT-E----C--CEHHHHH--HC-SEEEE-----
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCC---cCHHHHHHCCCe----e--ccHHHHH--hhCCEEEE-----
Confidence 578999999997 33 34556666884344544443 123445556653 1 2333321 56899885
Q ss_pred cccCcchHHHHH-HHHhccccCCeEEEcccc
Q 016314 156 FLLRESMFDSVI-CARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l-~~~~~~LkpgG~~i~~~~ 185 (391)
+..+.....++ +.+...|+||-.+++.+.
T Consensus 67 -L~PD~~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 67 -LLPDEVQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp --S-HHHHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred -eCChHHHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 22222344454 778889999999887755
No 463
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.73 E-value=28 Score=33.28 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+...
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456889999987664 3455667788 69999988 65555555555444 237888888866420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 83 ~g~iD~lInnA 93 (334)
T PRK07109 83 LGPIDTWVNNA 93 (334)
T ss_pred CCCCCEEEECC
Confidence 14789998754
No 464
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.64 E-value=28 Score=31.40 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=48.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++..|+.+...
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 356789999987764 4556667788 69999887 55555444444443 237888888866420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 81 ~~~id~li~~a 91 (254)
T PRK07478 81 FGGLDIAFNNA 91 (254)
T ss_pred cCCCCEEEECC
Confidence 14789988754
No 465
>PRK07890 short chain dehydrogenase; Provisional
Probab=69.64 E-value=28 Score=31.34 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=48.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ .-++.+.+.+...+ .++.++..|+.+...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 356889999987664 4555666788 79999988 55544444444333 347888888865421
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+|+...
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 14689998744
No 466
>PRK07411 hypothetical protein; Validated
Probab=69.53 E-value=12 Score=36.67 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=45.5
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 016314 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 135 (391)
...+||-+|||. |. .+..++..|..+++.+|.+ +. ++.|++.+++.+..-+|+.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 457899999994 43 6777888899888888754 22 22334444433333336666655
Q ss_pred cccCC---CCCcccEEEE
Q 016314 136 VEDIV---LPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~---~~~~~D~Ivs 150 (391)
+.... +-..+|+|+.
T Consensus 117 ~~~~~~~~~~~~~D~Vvd 134 (390)
T PRK07411 117 LSSENALDILAPYDVVVD 134 (390)
T ss_pred cCHHhHHHHHhCCCEEEE
Confidence 54321 1267999997
No 467
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.46 E-value=29 Score=31.24 Aligned_cols=70 Identities=27% Similarity=0.333 Sum_probs=43.9
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEE
Q 016314 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 79 ~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
+++||-.|++.|+ ++..+++.|+ +|+++..+ ..+...+......+. .+.++.+|+.+.. ....+|+|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 3578888886553 2344555677 68888877 544444444444333 3788888887642 124789998
Q ss_pred Ec
Q 016314 150 SE 151 (391)
Q Consensus 150 s~ 151 (391)
.+
T Consensus 79 ~~ 80 (257)
T PRK09291 79 NN 80 (257)
T ss_pred EC
Confidence 74
No 468
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.18 E-value=15 Score=35.89 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016314 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567899999984 54 5677888899899998874
No 469
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=68.97 E-value=23 Score=32.94 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=49.0
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016314 81 TVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
+|.-||+|. |.++..+++.|. +|+++|.+ +.++.+.+ .+. +.....+.. .-...|+|+.-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~---~~~~aDlVilavp---- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS---LLKDCDLVILALP---- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh---HhcCCCEEEEcCC----
Confidence 466788885 456666777776 79999998 65555443 222 211111211 1256898886321
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcccce
Q 016314 158 LRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
......+++.+...++++. ++.+..+
T Consensus 67 --~~~~~~~~~~l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 67 --IGLLLPPSEQLIPALPPEA-IVTDVGS 92 (279)
T ss_pred --HHHHHHHHHHHHHhCCCCc-EEEeCcc
Confidence 1223445666666677764 4444333
No 470
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=68.85 E-value=21 Score=33.59 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=58.7
Q ss_pred CCCCEEEEECCcccHH--HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016314 77 FQGKTVLDVGTGSGIL--AIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~l--s~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
.++++|.-||||+-.. ++-+...|..-++|+-.. .. -+++..+|+. ..++.+.. ...|+|+.
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----~~kA~~dGf~------V~~v~ea~--k~ADvim~--- 80 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----WKKAKEDGFK------VYTVEEAA--KRADVVMI--- 80 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----HHHHHhcCCE------eecHHHHh--hcCCEEEE---
Confidence 5788999999999544 455666688778888776 43 3445566653 22333322 57899875
Q ss_pred cccccCcchHHHHHH-HHhccccCCeEEEcccc
Q 016314 154 GYFLLRESMFDSVIC-ARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~-~~~~~LkpgG~~i~~~~ 185 (391)
.+..+ ....+.+ .+...|+.|..+.+.+.
T Consensus 81 --L~PDe-~q~~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 81 --LLPDE-QQKEVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred --eCchh-hHHHHHHHHhhhhhcCCceEEeccc
Confidence 12233 3444555 88899999988776644
No 471
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=68.77 E-value=29 Score=32.74 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CC
Q 016314 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LP 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 142 (391)
++++||-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+.+... ..++.++..|+.+.. ..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 56789999976653 3445566687 79999877 5444433333221 234888888987642 11
Q ss_pred CcccEEEEcc
Q 016314 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
.++|++|.+.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 3589999853
No 472
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=68.76 E-value=16 Score=35.30 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--cccc-C-C-CCCccc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SVED-I-V-LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~~-~-~-~~~~~D 146 (391)
...++.+||-+|+|. |.++..+|+. |+.+|++++.+ +.++.+++ .|....+..... +..+ + . ..+.+|
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCc
Confidence 345788999999864 5666666665 77679999998 66555543 343211111111 1111 0 0 123689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016314 147 VIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
+|+-- .+. ...+....+.|+++ |.++..
T Consensus 259 ~vid~-~g~--------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 259 YTFEC-IGN--------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EEEEC-CCC--------hHHHHHHHHhhccCCCeEEEE
Confidence 98841 111 12344445678886 877643
No 473
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=68.74 E-value=13 Score=35.46 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=53.7
Q ss_pred CCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccc----cCCCCCc
Q 016314 74 KHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVE----DIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~~~~~~ 144 (391)
....++.+||-.|+ |.|.++..+|+. |+ +|+++..+ +..+.+++. .|....+..-.. +.. ... +..
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-~~g 221 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-PNG 221 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-CCC
Confidence 34567899999987 346666666665 77 68888877 555544431 343221211111 211 111 246
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|+- ..+ . ..+....+.|+++|.++.
T Consensus 222 vd~v~d-~~g----~-----~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 222 IDIYFD-NVG----G-----KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred cEEEEE-CCC----H-----HHHHHHHHHhccCcEEEE
Confidence 898884 212 1 234455677999999874
No 474
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.72 E-value=21 Score=33.29 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=41.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016314 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
...++..|||--+|+|.....+.+.|- +.+++|++ ...+.+.++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 357889999999999999999988876 69999999 8888888887654
No 475
>PRK09186 flagellin modification protein A; Provisional
Probab=68.53 E-value=27 Score=31.38 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=45.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016314 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 142 (391)
++++||-.|++.|+ ++..+++.|+ +|+++..+ +.++.+.+.+....-...+.++.+|+.+..- -
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56889999986653 3455666687 69998877 5554444444322112336777888876420 0
Q ss_pred CcccEEEEcc
Q 016314 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|++|...
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3489998754
No 476
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.46 E-value=5.9 Score=34.17 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCCCCEEEEECCcc-cHH-HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016314 75 HHFQGKTVLDVGTGS-GIL-AIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~l-s~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
....+++|.-+|+|. |.- +..+...|. +|+++|.+ .... .....+ + ...++.++- ...|+|+..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell--~~aDiv~~~ 98 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE----GADEFG----V--EYVSLDELL--AQADIVSLH 98 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH----HHHHTT----E--EESSHHHHH--HH-SEEEE-
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh----hccccc----c--eeeehhhhc--chhhhhhhh
Confidence 356789999999985 543 333333477 89999999 5332 122211 2 222444432 568999863
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
... .......+ =.+....+|+|.+||
T Consensus 99 ~pl-t~~T~~li---~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 99 LPL-TPETRGLI---NAEFLAKMKPGAVLV 124 (178)
T ss_dssp SSS-STTTTTSB---SHHHHHTSTTTEEEE
T ss_pred hcc-ccccceee---eeeeeeccccceEEE
Confidence 311 11111111 122345688998777
No 477
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.44 E-value=27 Score=32.55 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=49.7
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC---CcEEEEEcccccCCCCCcccEEEEcccc
Q 016314 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ---DVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 81 ~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
+|+-||+|. | .++..+++.|. +|+.++.+ +.++..+ ..++. ........-..+....+.+|+|+.-.-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 588899986 3 45666777776 69999986 5443332 22331 1111000001111101678988863211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
..+..++..+...+.++..++.
T Consensus 77 ------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 77 ------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ------ccHHHHHHHHhhhcCCCCEEEE
Confidence 1356677777777877766654
No 478
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=68.23 E-value=30 Score=31.25 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=46.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|+.+|+ ++..+++.|+ +|+.++.+ +.++.+.+..+..+ .++.++..|+.+..-
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999987764 3445666788 68888877 55554444443332 237788888876420
Q ss_pred CCcccEEEEc
Q 016314 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
.+++|+++..
T Consensus 86 ~~~~d~li~~ 95 (255)
T PRK06113 86 LGKVDILVNN 95 (255)
T ss_pred cCCCCEEEEC
Confidence 1468988874
No 479
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.16 E-value=11 Score=35.73 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=51.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc----cccCCCCCcccE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS----VEDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~~~~~~~D~ 147 (391)
...++..||-.|||. |.....+|++ |++.|++++.+ .-.+.++ ..+....+.....+ +..+.....+|+
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~ 240 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR----EFGATDIVAERGEEAVARVRELTGGVGADA 240 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCceEecCCcccHHHHHHHhcCCCCCCE
Confidence 345677777788764 5555666665 77668999877 4333333 33432111111111 111112246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++.-. + . ...+....+.|+++|.++.
T Consensus 241 il~~~-g----~----~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 241 VLECV-G----T----QESMEQAIAIARPGGRVGY 266 (345)
T ss_pred EEECC-C----C----HHHHHHHHHhhccCCEEEE
Confidence 88511 1 1 2345556677899998874
No 480
>PRK07791 short chain dehydrogenase; Provisional
Probab=68.03 E-value=41 Score=31.20 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=45.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech----------HHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT----------KMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s----------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++..|+.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAA 80 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHH
Confidence 567899999998875 4555677788 58777643 22222222233322 23778888887641
Q ss_pred --------CCCcccEEEEcc
Q 016314 141 --------LPEKVDVIISEW 152 (391)
Q Consensus 141 --------~~~~~D~Ivs~~ 152 (391)
.-+++|++|.+.
T Consensus 81 ~~~~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHHHHhcCCCCEEEECC
Confidence 115789998753
No 481
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.84 E-value=41 Score=31.48 Aligned_cols=90 Identities=22% Similarity=0.223 Sum_probs=50.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016314 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
....++.+||-.|+|. |..+..+++. |+ +|++++.+ +..+.+++ .+....+ +.......+.+|+++.
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~~-----~~~~~~~~~~~d~vid 220 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVETVL-----PDEAESEGGGFDVVVE 220 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcEEe-----CccccccCCCCCEEEE
Confidence 3455778899888653 4444444444 77 49999888 66666654 3432111 1111122257999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. + . ...+....+.|+++|.++.
T Consensus 221 ~~-g----~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 221 AT-G----S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 21 1 1 1234444567899998874
No 482
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=67.81 E-value=11 Score=31.41 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=29.1
Q ss_pred EECCccc--HHHHHHH--HcC-CCeEEEEech-HHHHHHHHH--HHHcCCCCcEEEEEcc
Q 016314 84 DVGTGSG--ILAIWSA--QAG-ARKVYAVEAT-KMSDHARTL--VKANNLQDVVEVIEGS 135 (391)
Q Consensus 84 DlGcG~G--~ls~~~a--~~g-~~~V~avD~s-~~~~~a~~~--~~~~~~~~~v~~~~~d 135 (391)
|||++.| .....++ ..+ ..+|+++|++ ...+..+++ +..+...+.+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 4444433 332 3479999999 777888877 5555443335555433
No 483
>PRK07904 short chain dehydrogenase; Provisional
Probab=67.62 E-value=27 Score=31.71 Aligned_cols=73 Identities=26% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HH-HHHHHHHHHHcCCCCcEEEEEcccccCC-----C----C-
Q 016314 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KM-SDHARTLVKANNLQDVVEVIEGSVEDIV-----L----P- 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~- 142 (391)
.+++||-.|++.|+ ++..+++.|..+|++++.+ +- ++.+.+.++..+- .+++++..|+.+.. . .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHhc
Confidence 45789999997764 3334455553379999887 43 5544444444432 24889999986642 1 1
Q ss_pred CcccEEEEc
Q 016314 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivs~ 151 (391)
+..|+++.+
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 478988863
No 484
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.54 E-value=17 Score=35.17 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-.|+|. |.++..+|+. |+.+|++++.+ +..+.+++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 456788999998764 5566666665 77679999988 66665543
No 485
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=67.52 E-value=18 Score=32.78 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016314 78 QGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
.+.+||-+|||. |. .+..+++.|..+++.+|..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999984 54 4667888899899988854
No 486
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=67.47 E-value=17 Score=34.46 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=51.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCCCcccEEEE
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLPEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~Ivs 150 (391)
...++.+||-.|+|. |..+..++++ |+ +|++++.+ +..+.+++ .+....+.....+..+ +.....+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 456778999999754 5555556665 77 69999888 65555533 3332111111111111 100135788884
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. +. ...+....+.|+++|.++.
T Consensus 235 ~~-g~--------~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 235 TA-PN--------AKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CC-Cc--------hHHHHHHHHHcccCCEEEE
Confidence 11 10 1234455677899998774
No 487
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=67.32 E-value=33 Score=31.24 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+..+..+ .++.++.+|+.+..-
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999988764 4555667788 58888877 55555555454433 247888899876420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|...
T Consensus 85 ~~~id~li~~a 95 (265)
T PRK07097 85 VGVIDILVNNA 95 (265)
T ss_pred CCCCCEEEECC
Confidence 14689998743
No 488
>PRK06125 short chain dehydrogenase; Provisional
Probab=67.28 E-value=32 Score=31.10 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=47.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 145 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+.... ..++.++..|+.+.. .-+++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 357899999987653 3455666788 79999988 65554444443321 223778888886532 11578
Q ss_pred cEEEEcc
Q 016314 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivs~~ 152 (391)
|++|...
T Consensus 83 d~lv~~a 89 (259)
T PRK06125 83 DILVNNA 89 (259)
T ss_pred CEEEECC
Confidence 9988743
No 489
>PRK06196 oxidoreductase; Provisional
Probab=67.26 E-value=32 Score=32.37 Aligned_cols=69 Identities=28% Similarity=0.322 Sum_probs=44.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+. .+.++.+|+.+.. .
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 457899999976553 3444555687 69998887 54443333222 1678888887652 1
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
.+++|++|.+.
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 15789998854
No 490
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=67.01 E-value=24 Score=33.25 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=41.4
Q ss_pred CCCEEEEECCcccHHHHH----HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEE
Q 016314 78 QGKTVLDVGTGSGILAIW----SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~----~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~I 148 (391)
.+++||-.|+ +|.++.. +++.|. +|+++..+ .............+...+++++.+|+.+... -..+|+|
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 3578998884 4555444 444577 68777655 3222222222222222458899999987531 1468988
Q ss_pred EEc
Q 016314 149 ISE 151 (391)
Q Consensus 149 vs~ 151 (391)
+..
T Consensus 82 ih~ 84 (325)
T PLN02989 82 FHT 84 (325)
T ss_pred EEe
Confidence 873
No 491
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=67.00 E-value=18 Score=35.00 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=30.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHH
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHAR 117 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~ 117 (391)
...++.+||-.|+|. |.++..+|++ |+.+|++++.+ .-.+.++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 456788999998864 5566666665 77679999988 6555554
No 492
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=66.82 E-value=11 Score=35.93 Aligned_cols=94 Identities=28% Similarity=0.320 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEEE
Q 016314 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~Iv 149 (391)
.++.+||-.|+|. |..+..++++ |.+.|++++.+ ...+.+++ .+....+.....+. .++...+.+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 4677787777652 4555555555 76558888766 44443332 33321111111121 1111125689998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... + . ...+....+.|+++|.++..
T Consensus 236 d~~-g----~----~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 236 EMS-G----A----PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred ECC-C----C----HHHHHHHHHhhcCCCEEEEE
Confidence 521 1 1 12345556778999987643
No 493
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.81 E-value=34 Score=30.57 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=46.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ ..++.+.+.+...+ .++.++..|+.+...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357889999975543 2344555677 69999988 55554544444433 347788888765310
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
.+++|.||...
T Consensus 80 ~~~id~vi~~a 90 (253)
T PRK08217 80 FGQLNGLINNA 90 (253)
T ss_pred cCCCCEEEECC
Confidence 14689998743
No 494
>PRK07831 short chain dehydrogenase; Provisional
Probab=66.73 E-value=36 Score=30.85 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCCCEEEEECC-cccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCC----------
Q 016314 77 FQGKTVLDVGT-GSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 77 ~~~~~VLDlGc-G~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~---------- 140 (391)
.+++++|-.|+ |+|+ ++..+++.|+ +|+.++.+ +.++.+.+.++. .+- .++.++..|+.+..
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHH
Confidence 45688999986 4443 4555666788 69999987 655555554443 221 24788888886641
Q ss_pred -CCCcccEEEEcc
Q 016314 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivs~~ 152 (391)
.-+++|++|...
T Consensus 93 ~~~g~id~li~~a 105 (262)
T PRK07831 93 ERLGRLDVLVNNA 105 (262)
T ss_pred HHcCCCCEEEECC
Confidence 014689888743
No 495
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=66.34 E-value=12 Score=35.68 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=50.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-------cCCCCCc
Q 016314 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-------DIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~~~~~~~ 144 (391)
...++.+||-.|+|. |..+..+|++ |+..|++++.+ ...+.+ +..+.. .++..+-. .+.....
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA----RKFGAD---VVLNPPEVDVVEKIKELTGGYG 243 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH----HHcCCc---EEecCCCcCHHHHHHHHhCCCC
Confidence 345677777777653 5555556665 77678899887 444333 333432 12221111 1111245
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016314 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+++... + . ...+....+.|+++|.++-
T Consensus 244 vdvvld~~-g----~----~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 244 CDIYIEAT-G----H----PSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred CCEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 89988521 1 1 1224445677899998764
No 496
>PRK09072 short chain dehydrogenase; Provisional
Probab=66.28 E-value=33 Score=31.11 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------CC
Q 016314 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------PE 143 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~ 143 (391)
+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.+. . ..++.++..|+.+..- -+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56789999987654 4555667788 69999988 55544443332 2 2358888888876421 14
Q ss_pred cccEEEEc
Q 016314 144 KVDVIISE 151 (391)
Q Consensus 144 ~~D~Ivs~ 151 (391)
.+|.++..
T Consensus 80 ~id~lv~~ 87 (263)
T PRK09072 80 GINVLINN 87 (263)
T ss_pred CCCEEEEC
Confidence 67998874
No 497
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=66.22 E-value=24 Score=32.00 Aligned_cols=70 Identities=24% Similarity=0.270 Sum_probs=41.7
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEccccc
Q 016314 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
+||-+|||. |. +...++..|.++++.+|.+ +. ++.|.+.+++....-+|+.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 478899983 44 4566777898889888764 21 22333444333323336666666632
Q ss_pred ---CC--CCCcccEEEE
Q 016314 139 ---IV--LPEKVDVIIS 150 (391)
Q Consensus 139 ---~~--~~~~~D~Ivs 150 (391)
+. +-.+||+|++
T Consensus 81 ~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 81 EQDFNDTFFEQFHIIVN 97 (234)
T ss_pred hhhchHHHHhCCCEEEE
Confidence 21 1268999997
No 498
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=66.19 E-value=33 Score=30.95 Aligned_cols=73 Identities=25% Similarity=0.241 Sum_probs=46.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|+..|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++..|+.+...
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999975432 3344555687 69999988 55555555554433 237788888876420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-++.|+++...
T Consensus 85 ~~~~d~li~~a 95 (255)
T PRK07523 85 IGPIDILVNNA 95 (255)
T ss_pred cCCCCEEEECC
Confidence 14689988743
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.13 E-value=38 Score=30.20 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=45.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016314 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
..+++||-.|++.|+ ++..+++.|+ +|++++-+ ..+..+.+.+...+ ..+.++.+|+.+...
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789988875443 3444566677 69999887 54444444444333 238888888876420
Q ss_pred CCcccEEEEcc
Q 016314 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
.+++|+|+...
T Consensus 81 ~~~~d~vi~~a 91 (251)
T PRK12826 81 FGRLDILVANA 91 (251)
T ss_pred hCCCCEEEECC
Confidence 03689988743
No 500
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=65.75 E-value=22 Score=33.63 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=50.4
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC-----CcEEEEEcccc-cCCCCCcccEEEEc
Q 016314 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQ-----DVVEVIEGSVE-DIVLPEKVDVIISE 151 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~-----~~v~~~~~d~~-~~~~~~~~D~Ivs~ 151 (391)
.+|+-||+|. |.++..++++|. .|+.+..+. .+ ....+++. ....+....+. ..+....+|+|+.-
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 5799999996 457788888886 688877663 11 12333421 10111100011 11112578988752
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016314 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.-.+ .+..++..+..++++++.+++.
T Consensus 80 vK~~------~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKTT------ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecCC------ChHhHHHHHhhhcCCCCEEEEe
Confidence 2111 2345677777788888876643
Done!