BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016315
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 193/316 (61%), Gaps = 11/316 (3%)
Query: 58 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 116
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 117 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 174
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 175 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 234
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 235 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 294
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 295 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 354
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 355 VFARDM---LEVSQEF 367
+ +D+ +E+S ++
Sbjct: 308 IVTKDLAQCVEISNQY 323
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 193/316 (61%), Gaps = 11/316 (3%)
Query: 58 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 116
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 117 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 174
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 175 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 234
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 235 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 294
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 295 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 354
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 355 VFARDM---LEVSQEF 367
+ +D+ +E+S ++
Sbjct: 308 IVTKDLAQCVEISNQY 323
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 134/249 (53%), Gaps = 17/249 (6%)
Query: 74 SSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVS--ELPDPELDAAVK---- 127
+ I V I+ +R GDA++ + T RFD VV+ + ELP L+AA +
Sbjct: 33 TDIHQRVTEIIGCIRRDGDAALVELTARFDHF----VVDTAAALELPRDVLEAAWQALPA 88
Query: 128 ---EAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTA 184
+A A I A+ QK G + + VGLYVPGG A PS+
Sbjct: 89 EQAKALREAAERIRAYAERQKLDSWDYREADGTLLGQKITPLDRVGLYVPGGKAAYPSSV 148
Query: 185 LMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTE 244
L +VPA++AG ++ A P + G + VL A +GV + + GGAQA++A+A+GTE
Sbjct: 149 LXNAVPAKVAGVPELIXAVPAPR-GELNALVLAAAYISGVDRVFRIGGAQAVAALAYGTE 207
Query: 245 SCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLS 304
+ P+V+KI GPGN YV AK ++ + ID AGPSE+LVI+D P IA DL S
Sbjct: 208 TVPRVDKIVGPGNIYVATAKKLVFG---QVGIDXVAGPSEILVISDGRTDPDWIAXDLFS 264
Query: 305 QAEHGPDSQ 313
QAEH D+Q
Sbjct: 265 QAEHDEDAQ 273
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 233 AQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPA 280
A AISA+ WG S P+V + G G T +I+ E +++D+P
Sbjct: 69 AGAISALRWGG-SAPRVIFLHGGGQNAHTWDTVIVGLGEPALAVDLPG 115
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 54 LSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERF 102
L L + + LK+R R+DF + M+ + +NRG + +DY E F
Sbjct: 49 LKVLGNPKSDELKSR-RVDFETFLPMLQAVA---KNRGQGTYEDYLEGF 93
>pdb|2BL8|A Chain A, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
pdb|2BL8|B Chain B, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
pdb|2BL8|C Chain C, 1.6 Angstrom Crystal Structure Of Enta-Im: A Bacterial
Immunity Protein Conferring Immunity To The
Antimicrobial Activity Of The Pediocin-Like Bacteriocin,
Enterocin A
Length = 103
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 79 MVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIY 138
+VH + +D+ D D E KV L+ + P P ++ V + AY N
Sbjct: 8 IVHELYNDISISKDPKYSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAYTNKI 67
Query: 139 AFHLAQKSAETSVENMKGVRCKRVARSIGSVGLY 172
F Q E + N+ + R+ G GLY
Sbjct: 68 RFTEYQ---EELIRNL-----SEIGRTAGINGLY 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,063,380
Number of Sequences: 62578
Number of extensions: 368938
Number of successful extensions: 963
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 6
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)