Query 016317
Match_columns 391
No_of_seqs 102 out of 1167
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:45:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5.4E-55 1.2E-59 408.4 26.4 365 1-380 68-449 (449)
2 PTZ00206 amino acid transporte 100.0 4E-54 8.7E-59 421.0 17.9 371 1-381 81-465 (467)
3 KOG1303 Amino acid transporter 100.0 1.8E-50 3.9E-55 384.6 24.9 372 1-383 59-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 6.2E-52 1.3E-56 403.0 -0.3 370 1-377 24-408 (409)
5 PLN03074 auxin influx permease 100.0 2.3E-46 5E-51 364.6 21.1 367 1-390 67-461 (473)
6 KOG4303 Vesicular inhibitory a 100.0 4.4E-46 9.5E-51 329.0 3.4 371 1-389 138-523 (524)
7 KOG1305 Amino acid transporter 100.0 1.2E-41 2.5E-46 322.8 25.0 368 1-383 27-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 7.9E-29 1.7E-33 238.4 25.1 365 1-377 30-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 9E-20 1.9E-24 174.6 22.8 349 1-369 24-391 (394)
10 TIGR00837 araaP aromatic amino 99.8 2E-19 4.4E-24 173.1 20.4 329 1-349 18-360 (381)
11 PRK10483 tryptophan permease; 99.8 3.8E-19 8.2E-24 168.8 20.6 348 1-370 32-400 (414)
12 PRK09664 tryptophan permease T 99.8 1.7E-18 3.8E-23 164.1 22.4 351 1-371 30-402 (415)
13 PRK15132 tyrosine transporter 99.8 3E-18 6.5E-23 163.4 21.0 348 1-371 24-390 (403)
14 PRK13629 threonine/serine tran 99.7 2.7E-15 5.8E-20 142.7 21.6 363 8-375 46-441 (443)
15 TIGR00814 stp serine transport 99.6 5.3E-15 1.2E-19 141.5 15.2 355 2-366 25-396 (397)
16 PRK10655 potE putrescine trans 99.0 1.3E-07 2.9E-12 92.8 23.1 206 10-231 37-244 (438)
17 TIGR00909 2A0306 amino acid tr 99.0 3.7E-08 7.9E-13 96.5 18.3 317 14-349 38-377 (429)
18 PRK11021 putative transporter; 98.9 1.5E-06 3.3E-11 84.6 26.5 314 13-349 33-363 (410)
19 TIGR00905 2A0302 transporter, 98.9 3E-07 6.5E-12 91.2 21.3 205 15-232 44-254 (473)
20 TIGR00908 2A0305 ethanolamine 98.9 4.4E-07 9.6E-12 89.3 21.5 205 9-229 37-244 (442)
21 PRK10644 arginine:agmatin anti 98.8 1.2E-06 2.6E-11 86.2 24.2 203 15-232 43-247 (445)
22 TIGR03810 arg_ornith_anti argi 98.8 6.6E-07 1.4E-11 88.6 21.8 324 10-349 33-381 (468)
23 PRK10746 putative transport pr 98.8 1.5E-06 3.3E-11 85.8 23.9 319 14-349 45-389 (461)
24 PRK11357 frlA putative fructos 98.8 7.9E-07 1.7E-11 87.5 19.5 57 170-231 194-250 (445)
25 PF13520 AA_permease_2: Amino 98.8 5.8E-07 1.3E-11 88.0 18.2 322 14-352 32-379 (426)
26 TIGR00930 2a30 K-Cl cotranspor 98.7 1.4E-06 2.9E-11 92.4 21.6 219 2-230 102-334 (953)
27 PRK10249 phenylalanine transpo 98.7 1.4E-06 3E-11 86.1 20.5 317 10-347 53-394 (458)
28 PRK10435 cadB lysine/cadaverin 98.7 3.1E-06 6.8E-11 83.0 22.9 208 14-235 39-246 (435)
29 COG1113 AnsP Gamma-aminobutyra 98.7 5.8E-07 1.3E-11 85.1 16.4 315 16-348 50-389 (462)
30 PRK10197 gamma-aminobutyrate t 98.7 2.8E-06 6.1E-11 83.6 21.6 317 10-347 24-367 (446)
31 PRK11387 S-methylmethionine tr 98.7 3.1E-06 6.7E-11 84.0 21.3 206 14-236 50-266 (471)
32 PRK11049 D-alanine/D-serine/gl 98.7 6.2E-06 1.3E-10 81.7 22.9 321 9-348 51-399 (469)
33 PRK10238 aromatic amino acid t 98.7 6.5E-06 1.4E-10 81.3 22.8 318 10-348 44-386 (456)
34 TIGR01773 GABAperm gamma-amino 98.6 4.8E-06 1.1E-10 82.1 21.2 206 9-231 43-256 (452)
35 TIGR00906 2A0303 cationic amin 98.6 4.9E-06 1.1E-10 83.9 20.6 320 15-348 65-411 (557)
36 PRK10580 proY putative proline 98.6 1.2E-05 2.6E-10 79.4 22.8 201 14-230 44-253 (457)
37 TIGR00913 2A0310 amino acid pe 98.6 1.8E-05 3.9E-10 78.7 23.7 207 9-230 33-251 (478)
38 TIGR03813 put_Glu_GABA_T putat 98.6 7.2E-06 1.6E-10 81.4 20.7 53 179-236 202-254 (474)
39 PRK15049 L-asparagine permease 98.6 1.8E-05 3.8E-10 79.0 22.7 320 10-348 60-406 (499)
40 TIGR00910 2A0307_GadC glutamat 98.5 1E-05 2.2E-10 80.9 20.1 52 173-229 196-247 (507)
41 TIGR00907 2A0304 amino acid pe 98.5 5.8E-05 1.2E-09 75.2 25.5 209 10-226 45-267 (482)
42 KOG1287 Amino acid transporter 98.5 8.7E-06 1.9E-10 78.4 17.7 323 11-353 46-391 (479)
43 TIGR00911 2A0308 L-type amino 98.5 1.7E-05 3.7E-10 79.3 20.8 204 16-232 81-291 (501)
44 TIGR00912 2A0309 spore germina 98.4 5E-06 1.1E-10 79.5 14.9 304 14-349 36-355 (359)
45 PRK10836 lysine transporter; P 98.4 7.4E-05 1.6E-09 74.5 22.5 209 9-233 46-262 (489)
46 COG0531 PotE Amino acid transp 98.4 5.3E-05 1.1E-09 74.9 21.4 317 19-349 52-390 (466)
47 TIGR03428 ureacarb_perm permea 98.2 0.0012 2.6E-08 65.6 26.3 208 15-230 50-267 (475)
48 PRK15238 inner membrane transp 98.1 0.00075 1.6E-08 67.5 22.8 56 171-231 211-266 (496)
49 PF00324 AA_permease: Amino ac 98.1 2.4E-05 5.2E-10 77.8 11.3 219 10-238 27-262 (478)
50 COG0833 LysP Amino acid transp 98.0 0.0019 4.1E-08 63.1 22.1 323 9-347 75-427 (541)
51 PF03845 Spore_permease: Spore 97.9 0.00051 1.1E-08 64.5 16.1 249 17-287 37-295 (320)
52 COG3949 Uncharacterized membra 97.9 0.001 2.2E-08 60.8 16.3 106 14-131 38-143 (349)
53 TIGR00800 ncs1 NCS1 nucleoside 97.8 0.0023 5E-08 62.9 19.2 233 45-285 76-328 (442)
54 KOG3832 Predicted amino acid t 97.7 8.4E-05 1.8E-09 62.7 6.4 190 1-197 33-299 (319)
55 KOG1286 Amino acid transporter 97.6 0.00075 1.6E-08 67.5 12.1 330 6-347 59-422 (554)
56 TIGR02358 thia_cytX probable h 97.4 0.06 1.3E-06 51.9 22.7 218 45-284 58-276 (386)
57 PRK11375 allantoin permease; P 97.2 0.055 1.2E-06 53.8 20.2 233 45-286 89-343 (484)
58 KOG1289 Amino acid transporter 97.2 0.14 3.1E-06 50.3 21.9 214 21-242 92-318 (550)
59 COG1457 CodB Purine-cytosine p 96.9 0.068 1.5E-06 51.8 16.7 260 48-336 84-350 (442)
60 PRK09442 panF sodium/panthothe 96.6 0.86 1.9E-05 45.4 24.1 85 44-136 107-191 (483)
61 COG1914 MntH Mn2+ and Fe2+ tra 96.5 0.72 1.6E-05 44.7 20.5 57 292-348 322-378 (416)
62 TIGR00813 sss transporter, SSS 96.2 0.88 1.9E-05 44.2 20.0 85 44-136 65-149 (407)
63 TIGR02119 panF sodium/pantothe 96.1 1.7 3.6E-05 43.2 23.1 84 44-135 106-189 (471)
64 COG0591 PutP Na+/proline sympo 95.9 2.2 4.7E-05 42.7 22.0 81 44-132 104-184 (493)
65 PRK12488 acetate permease; Pro 95.7 2.8 6.1E-05 42.5 25.0 84 45-136 130-213 (549)
66 TIGR02711 symport_actP cation/ 95.5 3.3 7.1E-05 42.0 24.7 83 45-135 130-212 (549)
67 COG4147 DhlC Predicted symport 95.1 2 4.4E-05 41.7 17.0 290 44-350 103-443 (529)
68 PRK11017 codB cytosine permeas 95.1 2.4 5.1E-05 41.2 17.9 172 45-237 71-244 (404)
69 PF01566 Nramp: Natural resist 94.4 1.9 4.1E-05 41.1 15.2 83 46-137 43-127 (358)
70 PRK10484 putative transporter; 94.1 7.3 0.00016 39.3 20.0 22 44-66 100-121 (523)
71 PRK15419 proline:sodium sympor 93.8 7.8 0.00017 38.8 18.8 83 44-135 107-192 (502)
72 PF02133 Transp_cyt_pur: Perme 93.7 0.046 1E-06 53.8 2.9 48 46-94 72-119 (440)
73 COG1953 FUI1 Cytosine/uracil/t 93.4 8.8 0.00019 37.8 20.2 292 44-349 102-416 (497)
74 PF00474 SSF: Sodium:solute sy 93.0 1.6 3.5E-05 42.3 12.3 84 44-135 68-152 (406)
75 PRK09395 actP acetate permease 92.2 15 0.00032 37.4 24.3 83 44-134 131-213 (551)
76 TIGR00796 livcs branched-chain 92.0 12 0.00026 35.9 20.9 129 202-345 209-347 (378)
77 TIGR02121 Na_Pro_sym sodium/pr 91.8 15 0.00033 36.6 23.6 83 44-135 103-188 (487)
78 KOG2082 K+/Cl- cotransporter K 91.6 11 0.00024 38.9 15.8 130 10-143 145-289 (1075)
79 COG4145 PanF Na+/panthothenate 91.2 14 0.0003 35.1 19.4 75 45-127 106-180 (473)
80 TIGR03648 Na_symport_lg probab 90.3 23 0.00049 36.1 23.2 82 44-133 94-175 (552)
81 PF00209 SNF: Sodium:neurotran 90.1 17 0.00036 36.7 16.3 111 113-228 189-301 (523)
82 KOG2083 Na+/K+ symporter [Inor 88.4 0.62 1.3E-05 46.3 4.4 211 1-227 53-274 (643)
83 PF02554 CstA: Carbon starvati 88.1 1.5 3.3E-05 41.3 6.6 161 9-207 80-242 (376)
84 TIGR00796 livcs branched-chain 87.9 1.2 2.6E-05 42.7 6.0 75 45-128 255-329 (378)
85 COG0733 Na+-dependent transpor 87.1 31 0.00067 33.6 21.0 28 169-196 212-239 (439)
86 PRK00701 manganese transport p 86.4 35 0.00076 33.6 22.5 22 46-68 95-116 (439)
87 KOG1288 Amino acid transporter 85.3 20 0.00044 36.8 12.8 55 172-231 295-349 (945)
88 PF05525 Branch_AA_trans: Bran 83.7 46 0.001 32.5 16.5 118 214-345 229-353 (427)
89 PF05525 Branch_AA_trans: Bran 82.6 3.6 7.8E-05 40.1 6.5 68 45-120 261-328 (427)
90 PF05805 L6_membrane: L6 membr 70.0 37 0.00081 29.1 8.4 65 318-382 43-117 (195)
91 COG1114 BrnQ Branched-chain am 63.9 7.9 0.00017 37.2 3.5 98 10-120 230-330 (431)
92 COG0814 SdaC Amino acid permea 61.4 94 0.002 30.3 10.7 83 267-349 284-377 (415)
93 PRK15433 branched-chain amino 58.8 7.8 0.00017 37.9 2.6 100 10-120 232-331 (439)
94 KOG1289 Amino acid transporter 53.6 81 0.0018 31.7 8.6 48 46-94 326-373 (550)
95 CHL00020 psbN photosystem II p 51.6 14 0.0003 23.0 2.0 29 211-239 3-31 (43)
96 PRK13183 psbN photosystem II r 50.1 17 0.00038 22.9 2.3 29 211-239 6-34 (46)
97 PF02468 PsbN: Photosystem II 49.1 16 0.00034 22.9 1.9 29 212-240 4-32 (43)
98 PRK15015 carbon starvation pro 48.3 33 0.00073 35.1 5.2 62 9-75 111-174 (701)
99 PHA02680 ORF090 IMV phosphoryl 43.8 36 0.00079 24.8 3.4 67 176-249 16-83 (91)
100 TIGR01197 nramp NRAMP (natural 37.9 3.8E+02 0.0083 25.9 19.4 45 293-341 331-377 (390)
101 PF08078 PsaX: PsaX family; I 34.4 23 0.00049 20.8 0.9 25 2-30 11-35 (37)
102 PRK15433 branched-chain amino 34.2 4.7E+02 0.01 25.8 14.7 71 214-284 233-310 (439)
103 TIGR00907 2A0304 amino acid pe 33.1 4.7E+02 0.01 25.8 10.9 48 46-93 290-337 (482)
104 PF07086 DUF1352: Protein of u 32.2 1.7E+02 0.0036 25.1 6.2 53 335-387 81-133 (186)
105 PF07954 DUF1689: Protein of u 31.9 82 0.0018 25.9 4.2 64 323-386 33-98 (152)
106 PRK09950 putative transporter; 28.5 6.2E+02 0.014 25.5 13.4 95 44-139 166-265 (506)
107 PLN02680 carbon-monoxide oxyge 27.5 4.4E+02 0.0096 23.4 9.3 67 208-276 77-143 (232)
108 TIGR00909 2A0306 amino acid tr 27.1 1.9E+02 0.0041 28.0 6.8 47 46-93 265-311 (429)
109 TIGR00906 2A0303 cationic amin 26.6 6.2E+02 0.013 25.8 10.5 37 56-92 309-345 (557)
110 cd08763 Cyt_b561_CYB561 Verteb 25.2 1.9E+02 0.0041 23.5 5.3 46 344-390 30-75 (143)
111 KOG2466 Uridine permease/thiam 22.1 8.1E+02 0.018 24.6 12.3 193 45-247 118-331 (572)
112 TIGR00945 tatC Twin arginine t 21.8 4.6E+02 0.01 22.8 7.5 36 250-285 54-89 (215)
113 PF14004 DUF4227: Protein of u 20.4 3.1E+02 0.0067 19.3 4.8 21 371-391 18-38 (71)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-55 Score=408.37 Aligned_cols=365 Identities=20% Similarity=0.240 Sum_probs=319.8
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHhh----------CCCccCceehhh
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAF----------GPKLGPWIVLPQ 67 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~---~~~~~~~y~~l~~~~~----------G~~~g~~~v~~~ 67 (391)
||+||+++ ||+.|.+...+.+.++.|++|++++|.+.. .+....+|++.++.++ || ++|.+++++
T Consensus 68 lP~AFk~s-G~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~-~~r~~V~~~ 145 (449)
T KOG1304|consen 68 LPLAFKNS-GLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGP-AARFVVNFF 145 (449)
T ss_pred ChHHHHhc-chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcH-HHHHHHHHH
Confidence 79998886 999999999999999999999999997532 2222468888888877 33 678999999
Q ss_pred hhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 016317 68 QLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAG 147 (391)
Q Consensus 68 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~ 147 (391)
+.++|+|.|++|+++++++++++.+... ....+.+.|+.+..+..+|++++||+|.|+.+|.+|++..++...++.+.
T Consensus 146 L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y 223 (449)
T KOG1304|consen 146 LVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYY 223 (449)
T ss_pred HHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999422 23668899999999999999999999999999999999877655555444
Q ss_pred hhcccccccccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccc-hhhhhHHHHHHHHHhhh
Q 016317 148 SLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM-WKGALGAYFVNAICYFP 226 (391)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~-~~~~~~~~~~~~i~y~~ 226 (391)
...+. + +.++.+....+.+++..+|+.+|||+|+.++.|++++| |+|+++.- .+++..++.+++++|+.
T Consensus 224 ~~~~~-~-----~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~ 293 (449)
T KOG1304|consen 224 LVQDL-P-----PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIF 293 (449)
T ss_pred HHhcc-C-----CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHH
Confidence 33322 1 11223445568899999999999999999999999997 89996542 27888999999999999
Q ss_pred hhhhhhcccCCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 016317 227 VALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVA 306 (391)
Q Consensus 227 ~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
+|++||++|||++++.|+.|+|+ ++..+.+++++++.+..+||++++|..|++|+.+.++-+.+++++.....|..+++
T Consensus 294 ~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVl 372 (449)
T KOG1304|consen 294 LGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVL 372 (449)
T ss_pred HHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999999987776555578889999999999
Q ss_pred HHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016317 307 FTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWIINWASIFIGVFIMLASTIGGFRNI 380 (391)
Q Consensus 307 ~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~---~~~~~~~~~~~i~~g~~~~v~g~~~~i~~l 380 (391)
++..+|..+||++.+++++||++++.+++++|++++++.++++. .+++++.+.+++++|++.++.|||++++++
T Consensus 373 lt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 373 LTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999998775 367889999999999999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4e-54 Score=420.96 Aligned_cols=371 Identities=18% Similarity=0.193 Sum_probs=300.9
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||||+.+ +||++|++++++++.++.||.+++.+++++. +. .+|+|++++++|| +|++++++.+.+.++|+|++|+
T Consensus 81 LP~Af~~-~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~--~sY~~la~~~~G~-~g~~~v~~~~~~~~~G~cv~Yl 155 (467)
T PTZ00206 81 LPSAANS-SGLVMAMIYLIIITAMTIFSIYALGVAADKT-NI--RTYEGVARVLLGP-WGSYYVAATRAFHGFSACVAYV 155 (467)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC--CCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999766 5999999999999999999999999998753 32 4999999999997 6899999999999999999999
Q ss_pred eeccccHHHHHHHHhcCC----CCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 016317 81 VTGGKCLKKFVEMACSHC----KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN 156 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~----~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~ 156 (391)
++.+|+++++++...... ...++..+.+++.++++|++++|++++|+++|.+++++.+...+.+++....++.+++
T Consensus 156 Iiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~ 235 (467)
T PTZ00206 156 ISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPEN 235 (467)
T ss_pred HHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccc
Confidence 999999999876432110 0112334555677889999999999999999999998665444444444444444332
Q ss_pred cc---ccccCC---CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh
Q 016317 157 VS---YAYKHT---SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 230 (391)
Q Consensus 157 ~~---~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~ 230 (391)
.+ .+..+. .......+.+.++|+++|||.||.+.|++++|| +||+.+++.++...++.++.++|..+|++
T Consensus 236 ~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~ 311 (467)
T PTZ00206 236 IKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFF 311 (467)
T ss_pred ccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 111000 111223468899999999999999999999998 88888788899999999999999999999
Q ss_pred hhcccCCCCchhhhccc-CCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHH
Q 016317 231 GYWAFGQDVDDNVLMAL-KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTL 309 (391)
Q Consensus 231 gy~~fg~~~~~~il~n~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (391)
||+.|||+++++++.|+ |.++....++++++.+.++++||++.+|+|+.+++....+.+ +.+++++...+..+.+.++
T Consensus 312 GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l 390 (467)
T PTZ00206 312 GYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR-KVAFWKHCIAVVTLSVVML 390 (467)
T ss_pred hhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc-cCchhhHHHHHHHHHHHHH
Confidence 99999999999999999 455667778899999999999999999999999998744322 2344556566667777889
Q ss_pred HHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016317 310 FVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIK---KPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIV 381 (391)
Q Consensus 310 ~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~---~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li 381 (391)
++|+.+|+++.+++++||++++.++|++|+++|++.. +++...++++.+++++++|++..+.|||+++.+.+
T Consensus 391 ~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 391 LCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999999999999999999999999999842 22333445678999999999999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-50 Score=384.61 Aligned_cols=372 Identities=40% Similarity=0.729 Sum_probs=325.3
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhhe
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDI 77 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~---~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~ 77 (391)
||||+.+ +||+.|+++++..++++.||..+|.+|.+.+ +++|+++|.|+++++||+| +++++.+++..+++|+|+
T Consensus 59 LP~A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~-~~~iv~~~~~~~~fg~~v 136 (437)
T KOG1303|consen 59 LPYALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPK-GRLLVSVLQYLELFGICV 136 (437)
T ss_pred hHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCC-ceEeeeHHHHHHHHHHHH
Confidence 6999666 6999999999999999999999888887543 4567789999999999986 599999999999999999
Q ss_pred eeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-
Q 016317 78 VYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN- 156 (391)
Q Consensus 78 ~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~- 156 (391)
.|++..+|++..+.+.....+...+.+.|+++++++.+|++++||++.++++|..+.++++.+..+.+..+..++.+..
T Consensus 137 ~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~ 216 (437)
T KOG1303|consen 137 VYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCA 216 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999988754332344678999999999999999999999999999999999888888887777764431
Q ss_pred ccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccC
Q 016317 157 VSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 236 (391)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg 236 (391)
.+.+..+.... ...++++|++.|+|++|..+|+++++| |+|++ ++|++..++.+++.+|+.+++.||++||
T Consensus 217 ~~~~~~~~~~~---~~~f~a~g~iaFaf~gH~v~peIq~tM----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG 287 (437)
T KOG1303|consen 217 PSGGYLDLGTI---PTVFTALGIIAFAYGGHAVLPEIQHTM----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFG 287 (437)
T ss_pred cccCcccCCCC---cchhhhhhheeeeecCCeeeeehHhhc----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 11111111111 111899999999999999999999997 88887 6699999999999999999999999999
Q ss_pred CCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcC-CC-CchhHHHHHHHHHHHHHHHHHhh
Q 016317 237 QDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-FP-PGAAVRVVARSAYVAFTLFVGVT 314 (391)
Q Consensus 237 ~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ia~~ 314 (391)
|+++|+++.|++++.|....+++++.+|++.++.....|+.+.+|+....+.+ .. +....|.+.|..+++.+.++|+.
T Consensus 288 ~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~ 367 (437)
T KOG1303|consen 288 DSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALS 367 (437)
T ss_pred cccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHh
Confidence 99999999999756789999999999999999999999999999999976543 11 24458999999999999999999
Q ss_pred cccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016317 315 FPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWAS-IFIGVFIMLASTIGGFRNIVAD 383 (391)
Q Consensus 315 ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~-i~~g~~~~v~g~~~~i~~li~~ 383 (391)
+|.|+++++++||+...++.+++|+++|++.+|+++...++..++.+ +++|++.++....+++++++.+
T Consensus 368 ~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 368 FPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred ccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999998888899999999 7999999999999999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=6.2e-52 Score=403.03 Aligned_cols=370 Identities=28% Similarity=0.434 Sum_probs=313.4
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCC-CcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVP-GVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVY 79 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y 79 (391)
|||++.+ .||++|++++++++.++.+|.+++.|++++.+ +++.++|+|++++++||| +++++++++.++++|.+++|
T Consensus 24 lP~af~~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y 101 (409)
T PF01490_consen 24 LPYAFAQ-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPK-GKWFVDICIFIYLFGSCVAY 101 (409)
T ss_pred HHHHHHH-hhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc-ccccccchheecccccccee
Confidence 6999777 59999999999999999999999999988643 334569999999999985 78999999999999999999
Q ss_pred eeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 016317 80 MVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSY 159 (391)
Q Consensus 80 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 159 (391)
++..+|.++++.+...+. ...++..+.++..++.+|++++|+++++++.|.+++++.+.+..+.+.........++.+.
T Consensus 102 ~i~~~~~l~~~~~~~~~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (409)
T PF01490_consen 102 LIIIGDSLSSLIPSFFGD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGV 180 (409)
T ss_pred EEEeeeeeeccccccccc-ccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeeccccccc
Confidence 999999999998875422 2456778888889999999999999999999999999766432222222222221121122
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCcc-ccchhhhhHHHHHHHHHhhhhhhhhhcccCCC
Q 016317 160 AYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGAYFVNAICYFPVALIGYWAFGQD 238 (391)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~ 238 (391)
..++.....+..+++.++|+++|||.||+++|++.+|| |||++ ++++++...++.+++++|..+|+.||++|||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 256 (409)
T PF01490_consen 181 PSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS 256 (409)
T ss_pred ccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeeehhhhhhHHhhhhhhcccceeeee
Confidence 21111235567899999999999999999999999998 78887 56779999999999999999999999999999
Q ss_pred CchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHHHHHH
Q 016317 239 VDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLF 310 (391)
Q Consensus 239 ~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 310 (391)
+++|++.|++++++...++++++.++++.++|++.+|.++.+++.+.++ ++.+.++.+|..+|..+++++.+
T Consensus 257 ~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (409)
T PF01490_consen 257 VQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFL 336 (409)
T ss_pred ecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhh
Confidence 9999999999877788899999999999999999999999999999763 22344567899999999999999
Q ss_pred HHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016317 311 VGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIMLASTIGGF 377 (391)
Q Consensus 311 ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~i~~g~~~~v~g~~~~i 377 (391)
+|..+||++++++++|+++++.++|++|+++|++.+++++.+.++ ..++..+++|++.++.|+|+++
T Consensus 337 iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 337 IAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999999999999999999999999999999887644333 4478888999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.3e-46 Score=364.63 Aligned_cols=367 Identities=21% Similarity=0.292 Sum_probs=297.7
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCccc----CCC--c--cc--ccHHHHHHHhhCCCccCceehhhhhh
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHEC----VPG--V--RF--DRYIDLGRHAFGPKLGPWIVLPQQLI 70 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~--~--~~--~~y~~l~~~~~G~~~g~~~v~~~~~~ 70 (391)
||||+.+ +||++|++.+++.++++.||.+++.+++++ ++. . ++ .+|.|+++..+||+ ++.+.......
T Consensus 67 LP~Af~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~-~~~~~~~~~~v 144 (473)
T PLN03074 67 LPYSFSQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPY-WKNVGLAFNCT 144 (473)
T ss_pred HHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChh-HHHHHHHHHhh
Confidence 7999666 699999999999999999999999986432 221 1 11 37899999999985 56777888889
Q ss_pred hhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 016317 71 VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLS 150 (391)
Q Consensus 71 ~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~ 150 (391)
.+++.|+.|++..++++..+ +...+.+.|.+++.++.+|++++|++++++++|.+|+.+++.....+......
T Consensus 145 ~l~~~~v~~li~~~~~~~~l-------~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~ 217 (473)
T PLN03074 145 FLLFGSVIQLIACASNIYYI-------NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS 217 (473)
T ss_pred hhHHHHHHHHHHHhhhhhhh-------CCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999877766544 12456788999999999999999999999999999998765433333333333
Q ss_pred ccccccccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh
Q 016317 151 HGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 230 (391)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~ 230 (391)
++.+++.+. +.+.++..++.+.++++|+|++|..+||+++|| |||++++ ++...+.......|..+|+.
T Consensus 218 ~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~--~~~~l~~~~v~~~y~~~~~~ 286 (473)
T PLN03074 218 HGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK--YIYLAATLYVLTLTLPSAAA 286 (473)
T ss_pred hcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc--chHHHHHHHHHHHHHHHHHe
Confidence 333333221 123456778888889999999999999999997 8999766 88888999999999999999
Q ss_pred hhcccCCCCc--hhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHH
Q 016317 231 GYWAFGQDVD--DNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFT 308 (391)
Q Consensus 231 gy~~fg~~~~--~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (391)
||+.|||+++ ++.+.|+|++.+ ..++++++.++++.+||+++.|+.+..|+....+ ..+....|..+|+.+++.+
T Consensus 287 gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~ 363 (473)
T PLN03074 287 VYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPI 363 (473)
T ss_pred eeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHH
Confidence 9999999976 466777986544 6789999999999999999999999999986532 2345677899999999999
Q ss_pred HHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCC-------------CCch--HHHHHHHHHHH-HHHHHHHH
Q 016317 309 LFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK-------------RFSP--KWIINWASIFI-GVFIMLAS 372 (391)
Q Consensus 309 ~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~-------------~~~~--~~~~~~~~i~~-g~~~~v~g 372 (391)
+++|+.+|+|+++++++||++++.+++++|+++|++.++++ ..++ +.++|++++++ |++..+.|
T Consensus 364 ~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G 443 (473)
T PLN03074 364 WFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFG 443 (473)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccc
Confidence 99999999999999999999999999999999999977653 1122 24799999985 55557899
Q ss_pred HHHHHHHHHHhcccCcCC
Q 016317 373 TIGGFRNIVADASTYSFY 390 (391)
Q Consensus 373 ~~~~i~~li~~~~~~~~~ 390 (391)
+|++++++++++++++.|
T Consensus 444 ~~asi~~ii~~~~~~~~f 461 (473)
T PLN03074 444 GWASMTNFVRQIDTFGLF 461 (473)
T ss_pred hHHHHHHHHHhhhhhhhh
Confidence 999999999999998866
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-46 Score=328.97 Aligned_cols=371 Identities=20% Similarity=0.252 Sum_probs=323.3
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCC--Cc--c-cccHHHHHHHhhCCCccCceehhhhhhhhhhh
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVP--GV--R-FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC 75 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~--~~--~-~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~ 75 (391)
||||+.-. ||. |+..++..+.++.||..+|++|--+.. ++ | +++|.+++..+++|+.|.+.+.+.+.+.+..+
T Consensus 138 LP~AvlhG-Gyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmT 215 (524)
T KOG4303|consen 138 LPIAVLHG-GYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMT 215 (524)
T ss_pred cceeeeEc-chh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHH
Confidence 79998885 663 999999999999999999999965332 11 2 47999999999999999778899999999999
Q ss_pred heeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 016317 76 DIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIE 155 (391)
Q Consensus 76 ~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 155 (391)
|+.|+++.+|.+++.++.. +.+++.|+++....++|.+++|+++..+..|.++..+.+..-++++.++....
T Consensus 216 CIlYvVv~gdLl~~~fP~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~--- 287 (524)
T KOG4303|consen 216 CILYVVVAGDLLQSCFPGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV--- 287 (524)
T ss_pred HHhhhheechhhhccCCCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 9999999999998876653 67789999999999999999999999999999999988776666666655432
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhccc
Q 016317 156 NVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAF 235 (391)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~f 235 (391)
.+|+++......+..+++.++|++.|+|..|..+|+++..| +||++++ ..+-++.+...++-..+|..||++|
T Consensus 288 -~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf 360 (524)
T KOG4303|consen 288 -SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTF 360 (524)
T ss_pred -hhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe--eeeehHHHHHHHHHHHHHHheeeee
Confidence 25665444445667788999999999999999999999997 9999887 8888999999999999999999999
Q ss_pred CCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCC--------CCc--hhHHHHHHHHHH
Q 016317 236 GQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF--------PPG--AAVRVVARSAYV 305 (391)
Q Consensus 236 g~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~ 305 (391)
++++++.|.+|+|++. .+.++++++++..+.|||+.++.+.|.+|+-+.+.... ..+ +.+....|..++
T Consensus 361 ~~~TqevItnnLp~qs-fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lv 439 (524)
T KOG4303|consen 361 GELTQEVITNNLPNQS-FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILV 439 (524)
T ss_pred chhhHHHHhcCCCccc-hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHH
Confidence 9999999999999854 57789999999999999999999999999977644311 112 334556899999
Q ss_pred HHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016317 306 AFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADAS 385 (391)
Q Consensus 306 ~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~~~~ 385 (391)
+.++++|+.+|.|..+++++|+++++.++|+.|++||+++.++....+++..+..++++|..+++.|.|.+.+++++.++
T Consensus 440 vfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 440 VFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN 519 (524)
T ss_pred HHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999998878888999999999999999999999999999998
Q ss_pred cCcC
Q 016317 386 TYSF 389 (391)
Q Consensus 386 ~~~~ 389 (391)
....
T Consensus 520 ~~~~ 523 (524)
T KOG4303|consen 520 SADS 523 (524)
T ss_pred ccCC
Confidence 7643
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=322.77 Aligned_cols=368 Identities=20% Similarity=0.276 Sum_probs=308.5
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||||+++. |+++|++++.++++++.+|.+++.++.++.++ | +|++++++.+|+ .|+....+.......| |++|+
T Consensus 27 ~P~afk~~-Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~--ty~~l~~~~~g~-~g~~~~~v~~~~~~~g-~i~yl 100 (411)
T KOG1305|consen 27 MPYAFKTA-GLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-R--TYSSLGDLIFGK-LGKVDAAVAVKCFGVG-MVSYL 100 (411)
T ss_pred hHHHHHHh-cHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C--CHHHHHHHHcCC-CceeeehhhHHhhhcc-ceEEE
Confidence 69997775 99999999999999999999999999986543 4 999999999997 5877777776666666 79999
Q ss_pred eeccccHHHHHHHHhcCCCC----Ccchh-hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccc-c
Q 016317 81 VTGGKCLKKFVEMACSHCKP----LRQTF-WILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGR-I 154 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~----~~~~~-~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-~ 154 (391)
+.++|.++.+.......++. .+++. |.+....++.||++.|+++++++.|.++..+.+.+..++++....... .
T Consensus 101 iiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~ 180 (411)
T KOG1305|consen 101 IIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCAL 180 (411)
T ss_pred EEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999766554321111 23333 567788899999999999999999999999877666666665544322 1
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcc
Q 016317 155 ENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA 234 (391)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~ 234 (391)
++..+.. +....+++.+.++|++.|||.||+|..|+++|| |||+++++.++...+...+..+|...|++||+.
T Consensus 181 ~~~~~~~---~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~ 253 (411)
T KOG1305|consen 181 GRLSYLV---PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRVSNIAIILATLIYLLTGLFGYLT 253 (411)
T ss_pred CCccccc---CCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 1112221 223334789999999999999999999999998 999999999999999999999999999999999
Q ss_pred cCCCCchhhhcccCCchH------HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcC--CCCchhHHHHHHHHHHH
Q 016317 235 FGQDVDDNVLMALKRPGW------LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN--FPPGAAVRVVARSAYVA 306 (391)
Q Consensus 235 fg~~~~~~il~n~~~~~~------~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 306 (391)
|||++++|++.++++.+- .....+..+.++.+.++|+..+|+|..++....+.+. .+.++.++.+++..++.
T Consensus 254 Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~ 333 (411)
T KOG1305|consen 254 FGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLI 333 (411)
T ss_pred ecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHH
Confidence 999999999999985432 2468999999999999999999999998887765432 24567889999999999
Q ss_pred HHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016317 307 FTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVAD 383 (391)
Q Consensus 307 ~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~~ 383 (391)
++.+.|+.+|+++.+++++||++++.++|++|+++|++..|+ +.+++...+...++|+...+.|+..-+.++..+
T Consensus 334 ~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 334 FTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887 456678888999999999999999999988765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=7.9e-29 Score=238.37 Aligned_cols=365 Identities=18% Similarity=0.212 Sum_probs=273.4
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||+++.. .|++++++++++.+.++++|.+++.|+.++.++. +.+|.+++++.+||+ ++++.++...+.+++.+.+|.
T Consensus 30 lP~a~~~-~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~G~~-~~~li~~s~~~~~~~~~~aY~ 106 (415)
T COG0814 30 LPVAFGG-GGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYLGKK-GGILIGLSYFFALYGLLVAYI 106 (415)
T ss_pred hhHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 7999777 5999999999999999999999999999877654 259999999999996 679999999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYA 160 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 160 (391)
...+|.+++..++..+.. +.++....+++..++.++++.++...++..+.+.....+.+++...+..... .++.. ..
T Consensus 107 ~~~g~~l~~~~~~~~~~~-~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~-~~~~l-~~ 183 (415)
T COG0814 107 VGIGNLLASFLGNQFGLN-PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHW-NPANL-FA 183 (415)
T ss_pred hcchhHHHHHHHhhcccC-CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-CHHHH-hc
Confidence 999999999999854322 2577788888888999999999999999999999886554443333322221 11110 11
Q ss_pred ccCCCC-cchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCC
Q 016317 161 YKHTSS-ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV 239 (391)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~ 239 (391)
. ... +..+.+...++|++.|||+||+++|++.+|| ++++++..+|+...+..+..++|..+++++|..+|+++
T Consensus 184 ~--~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~ 257 (415)
T COG0814 184 L--PSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLV 257 (415)
T ss_pred c--cccchhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1 011 3567889999999999999999999999998 55555457799999999999999999999999999999
Q ss_pred chhhhcccCCch-------------HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCC--CC-c-hhHHHHHHH
Q 016317 240 DDNVLMALKRPG-------------WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF--PP-G-AAVRVVARS 302 (391)
Q Consensus 240 ~~~il~n~~~~~-------------~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~ 302 (391)
+++++++.++++ ......++...+.+..||--.....+|..++...++++. ++ . .........
T Consensus 258 ~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 337 (415)
T COG0814 258 FGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLI 337 (415)
T ss_pred HHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHH
Confidence 999999997532 233344445555555555555555566666666542111 11 1 122333344
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 016317 303 AYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGF 377 (391)
Q Consensus 303 ~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i 377 (391)
.........+...|..+.+.+.+|+.....+.++.|...+.+....+..+.++...++++++|+..+..-.+...
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 338 FALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777888888888888888888888888877766655443332225788888999988887766543
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=9e-20 Score=174.55 Aligned_cols=349 Identities=17% Similarity=0.224 Sum_probs=240.9
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||++..+ .|.+++++.+++++..+++|..++.|...+.++. .+|.+++++.+||+ |+++..+...+..++.+++|.
T Consensus 24 LP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~--~~~~~~a~~~lG~~-g~~~~~~~~~~~~y~ll~AYi 99 (394)
T PF03222_consen 24 LPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEG--SSLTSMAEKYLGKK-GGIVIGISYLFLLYALLVAYI 99 (394)
T ss_pred HHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5887666 5999999999999999999999999988766543 49999999999985 779999999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYA 160 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 160 (391)
.-.++.+++.++...+ .+.+++.-.+++.++....... ..+....++.+-+...+............+-.. +.-
T Consensus 100 sg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~---~~L 173 (394)
T PF03222_consen 100 SGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHWNP---SNL 173 (394)
T ss_pred HccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCH---HHh
Confidence 9999999999888642 2334444334443333333222 222333333333332221111111111111101 111
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhh--hhhhh------
Q 016317 161 YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIGY------ 232 (391)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~--g~~gy------ 232 (391)
.+..+...++...+..+|+..+||..|..+|++.+.++ +|++ +.+|++..+..+..++|+.. .+.|-
T Consensus 174 ~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~--k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~ 248 (394)
T PF03222_consen 174 LDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPK--KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQF 248 (394)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 11123456778889999999999999999999999984 3444 45599999999999999864 33331
Q ss_pred ---cccCCCCch--hhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHH
Q 016317 233 ---WAFGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAF 307 (391)
Q Consensus 233 ---~~fg~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
..-+++..+ ..+.+..++.+...+..++-.+.+.+||--.....+|.+++.++.++ +...|........++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~p 324 (394)
T PF03222_consen 249 AEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLP 324 (394)
T ss_pred HHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHh
Confidence 111222221 23334444456777889999999999999999999999999886532 233455556667788
Q ss_pred HHHHHhhccc-chhhhhhhhccccchhHhhhHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHH
Q 016317 308 TLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP-----KWIINWASIFIGVFIM 369 (391)
Q Consensus 308 ~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~-----~~~~~~~~i~~g~~~~ 369 (391)
+.++|...|+ |...+++.| ...+.+..++|+++.+|.+++++.+. .+.....++++|++..
T Consensus 325 pl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 325 PLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 9999999997 889999999 99999999999999999987765332 1334444555555443
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.84 E-value=2e-19 Score=173.12 Aligned_cols=329 Identities=15% Similarity=0.145 Sum_probs=235.9
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
+|.++.+ .|...+.+.+++.+..+.++...+.|...+.|+. .++.+.+++.+|| ++.+++.+...+.++..+.+|.
T Consensus 18 lP~~~a~-~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~--~~~~~~~~~~~G~-~~g~~~~~~~~~~~~~~~~ay~ 93 (381)
T TIGR00837 18 LPTSTAG-AWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG--ASFNTIAKDLLGK-TGNIIAGLSLLFVLYILTYAYI 93 (381)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666445 4888899999999999999999999998777653 3999999999998 5668989999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYA 160 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 160 (391)
...++.+..++++.... ..+++...++..+++.++. .+..+...+++.+.+...+....+..+....+..+++ ..
T Consensus 94 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~~--~~ 168 (381)
T TIGR00837 94 SGGGSILSRLIGEYFGF--PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGDL--LL 168 (381)
T ss_pred HccHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH--Hh
Confidence 99999999988764321 2233444444444444444 4466777777777766554333222222222211111 11
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCc
Q 016317 161 YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD 240 (391)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~ 240 (391)
+. ...+..+.+...+++...++|++|.+++++.+|+ +|+ +++.+|+...+..++.++|...........+.+.-
T Consensus 169 ~~-~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l 242 (381)
T TIGR00837 169 DV-ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEF 242 (381)
T ss_pred cC-ccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 10 0112245678889999999999999999999986 545 55788999999999999999876655544443211
Q ss_pred ----------hh---hhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHH
Q 016317 241 ----------DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAF 307 (391)
Q Consensus 241 ----------~~---il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
++ ...+.-.+.+...+......+.+.+|+.-...+.+|.+.+.++++++ +.+|.....+..++
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~ 318 (381)
T TIGR00837 243 LPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLP 318 (381)
T ss_pred HHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHh
Confidence 11 11121122356678888899999999999999999998888866432 22355667777889
Q ss_pred HHHHHhhcccch-hhhhhhhccccchhHhhhHHHHHHHHhCCC
Q 016317 308 TLFVGVTFPFFG-DLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 308 ~~~ia~~ip~~~-~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
+.++|...|+.. ..++..| +.+..+.+++|++++++.||++
T Consensus 319 pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 319 PLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999865 8999999 8889999999999999988764
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=3.8e-19 Score=168.83 Aligned_cols=348 Identities=15% Similarity=0.109 Sum_probs=240.1
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
+|++..+ .|.++++++++++|..+.||..++.|.+.+.+++ .++.+++|+.+||+ |+++..++..+..|+.+++|+
T Consensus 32 LP~~~a~-~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g--~~~~tma~~~LG~~-g~~i~~~s~lfl~Y~Ll~AYi 107 (414)
T PRK10483 32 LPVVMSG-AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG--SSFDTITKDLLGKG-WNVVNGISIAFVLYILTYAYI 107 (414)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5888555 5999999999999999999999999998766543 49999999999985 789989999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL--PDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVS 158 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~--~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 158 (391)
...+|.+++.+++. + .+.+++.-.+++.++.-...+. |..+....+-..+.+.++...+....- +-..+..
T Consensus 108 sg~g~il~~~l~~~-~--~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~~~l~~---~i~~~~L- 180 (414)
T PRK10483 108 SASGSILHHTFAEM-S--LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLG---HVQPATL- 180 (414)
T ss_pred hCcHHHHHHHHHhc-C--CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHH-
Confidence 99999999998763 1 1334455555555555555543 444444444444444333222111111 1111110
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhh--hhhhhcc--
Q 016317 159 YAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIGYWA-- 234 (391)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~--g~~gy~~-- 234 (391)
.+. .......+.....++|++.+||+.|+.+|++.+.++ +|++ +.+|++..+..+..++|+.. .+.|-..
T Consensus 181 ~~~-~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~ 254 (414)
T PRK10483 181 FNV-AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRP 254 (414)
T ss_pred hcc-ccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 000 011122345678899999999999999999999873 3444 56699999999999999973 3333221
Q ss_pred -------cCCCCch--hhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHH
Q 016317 235 -------FGQDVDD--NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYV 305 (391)
Q Consensus 235 -------fg~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
-|++.+. +.+.+..++.+...+..++-.+.+.+||--.....+|.+.+.++.+++ ...|........
T Consensus 255 ~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltf 330 (414)
T PRK10483 255 EFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTF 330 (414)
T ss_pred HHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhH
Confidence 2222211 111121233456667888889999999999999999999998876532 224555556788
Q ss_pred HHHHHHHhhccc-chhhhhhhhccccchhHhhhHHHHHHHHhCC-CCCchH----HHHHHHHHHHHHHHHH
Q 016317 306 AFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSPK----WIINWASIFIGVFIML 370 (391)
Q Consensus 306 ~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~-~~~~~~----~~~~~~~i~~g~~~~v 370 (391)
++++++|+..|+ |-..++..|.. .+.+.-++|+++.++.||+ +...++ +..-.+++++|+...+
T Consensus 331 lPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~ 400 (414)
T PRK10483 331 LPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNAL 400 (414)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHH
Confidence 899999999998 88899999976 7788899999999999976 222221 2233555556665444
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.82 E-value=1.7e-18 Score=164.15 Aligned_cols=351 Identities=14% Similarity=0.120 Sum_probs=239.7
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||++..+ .|..+++++++++|..+.||..++.|.+.+.+++ .++.+++|+.+||+ |+++..+...+..|+.+++|+
T Consensus 30 LP~~~a~-~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g--~~l~tma~~~LG~~-g~~i~~~~~~fl~Y~Ll~AYi 105 (415)
T PRK09664 30 LPVDLAG-AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG--SSFNTITKDLIGNT-WNIISGITVAFVLYILTYAYI 105 (415)
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5888555 5999999999999999999999999998766543 49999999999985 889999999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL--PDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENV- 157 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~--~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~- 157 (391)
...++.+++.+++..+ .+.+++.-.++++++.-+..+. |..+....+-..+.+.++...+.... .+-..+..
T Consensus 106 sggG~il~~~l~~~~~--~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~~~l~---~~i~~~~L~ 180 (415)
T PRK09664 106 SANGAIISETISMNLG--YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFF---FQVDYSILR 180 (415)
T ss_pred hccHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHh---hcccHHHHh
Confidence 9999999999876321 1334444445555555555443 44444444444333333222111111 11011110
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhh--hhhh----
Q 016317 158 SYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIG---- 231 (391)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~--g~~g---- 231 (391)
+.+.+. ...........++|++.+||+.|+++|++.+.++ +|+++ .+|++..+..+..++|..- .+.|
T Consensus 181 ~~~~~~-~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaIl~Gs~IpLviY~~W~~~ilG~lp~ 254 (415)
T PRK09664 181 DATSTT-AGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSVVFGSLLALVIYLFWLYCTMGNIPR 254 (415)
T ss_pred cCcccc-ccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 101000 0011234577899999999999999999999973 44444 4488998888888888642 2222
Q ss_pred -----hcccCCCCchhhhc--ccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHH
Q 016317 232 -----YWAFGQDVDDNVLM--ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAY 304 (391)
Q Consensus 232 -----y~~fg~~~~~~il~--n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
-..-|+++++.+.. +-.++.+...+..++..+.+.+||--.....+|.+.+.++.+++ +..|.......
T Consensus 255 ~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~lt 330 (415)
T PRK09664 255 ESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLT 330 (415)
T ss_pred HHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhh
Confidence 12233333331111 11233567778888999999999999999999999998865532 23455556678
Q ss_pred HHHHHHHHhhccc-chhhhhhhhccccchhHhhhHHHHHHHHhCCC-CCch----HHHHHHHHHHHHHHHHHH
Q 016317 305 VAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK-RFSP----KWIINWASIFIGVFIMLA 371 (391)
Q Consensus 305 ~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~i~~g~~~~v~ 371 (391)
.+++++.+...|+ |-..++..|.. .+.+.-++|+++-+|.||+. .... .+..-++.+++|++..+.
T Consensus 331 flPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 331 FLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred HhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence 8899999999998 88899999996 67999999999999999762 2221 234445556666665543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.81 E-value=3e-18 Score=163.40 Aligned_cols=348 Identities=15% Similarity=0.134 Sum_probs=234.6
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
||.+.-+ .|.++++++++++|..+.|+.+.+.|...+.++ ..++.+++|+.+||+ |+++..+...+..|..+.+|.
T Consensus 24 LPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g~~i~~~~y~fl~y~ll~AYi 99 (403)
T PRK15132 24 MPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-GQWLTGFSMMFLMYALTAAYI 99 (403)
T ss_pred HHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5777555 599999999999999999999999997665443 348999999999986 679999999999999999999
Q ss_pred eeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 016317 81 VTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYA 160 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 160 (391)
...++.+++.++++.+. +.+.....+.+.++.-...+. ..+..-++..+-+...+............+-..+. ..
T Consensus 100 sg~g~il~~~l~~~~~~--~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~--L~ 174 (403)
T PRK15132 100 SGAGELLASSISDWTGI--SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVN--LL 174 (403)
T ss_pred hCcHHHHHHHHHHhccC--CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--Hh
Confidence 99999999988774321 223333333333332222222 22333333322222111111111111111100011 00
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC--
Q 016317 161 YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-- 238 (391)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~-- 238 (391)
+.+.. .......+|++.+||+.|+.+|++.+.++ +|++ +.+|++..+..+..++|+..=......-+.+
T Consensus 175 --~~~~~--~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~ 245 (403)
T PRK15132 175 --TLPLQ--QGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTF 245 (403)
T ss_pred --cCCcc--ccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 00111 12478899999999999999999999972 3333 5669999999999999987533333322222
Q ss_pred ---Cc-----hhhhccc---CCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHH
Q 016317 239 ---VD-----DNVLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAF 307 (391)
Q Consensus 239 ---~~-----~~il~n~---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
.+ ++.+..+ .++.+...+...+-.+.+.+||--.....+|.+.+.++++++ ...|........++
T Consensus 246 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flp 321 (403)
T PRK15132 246 MGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLP 321 (403)
T ss_pred HHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHH
Confidence 11 1223322 234567778888889999999999999999999998865432 22356666788889
Q ss_pred HHHHHhhccc-chhhhhhhhccccchhHhhhHHHHHHHHhCCC-CCch----HHHHHHHHHHHHHHHHHH
Q 016317 308 TLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK-RFSP----KWIINWASIFIGVFIMLA 371 (391)
Q Consensus 308 ~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~i~~g~~~~v~ 371 (391)
+.++|...|+ |...+++.|. ..+.+.+++|+++-+|.++++ .++. .+...++.+++|++..+.
T Consensus 322 pli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 322 PLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 9999999997 8889999886 478999999999999988754 2122 345677777777776654
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.70 E-value=2.7e-15 Score=142.65 Aligned_cols=363 Identities=13% Similarity=0.068 Sum_probs=234.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccH
Q 016317 8 GIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 87 (391)
Q Consensus 8 ~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l 87 (391)
..|..++++++++++.+++++.+.+.|...+.++ +..++.+++|+.+||+ |+.+..+...+..|..+.+|...+.+.+
T Consensus 46 ~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~-g~~i~~ilYff~ly~ll~aY~~~itn~l 123 (443)
T PRK13629 46 FGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKT-GGVVITFLYFFAICPLLWIYGVTITNTF 123 (443)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999997764422 2359999999999997 5588899999999999999997777777
Q ss_pred HHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccc-cccc---C
Q 016317 88 KKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVS-YAYK---H 163 (391)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~---~ 163 (391)
++...++.+. .+.++....+++.+++....... -+..-+++..-+...+..........+-+=..+... .+.+ .
T Consensus 124 ~sfl~~ql~~-~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~ 201 (443)
T PRK13629 124 MTFWENQLGF-APLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSL 201 (443)
T ss_pred HHHHHhhcCc-CCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccc
Confidence 6655544321 12344455555555444444432 233333333322221111111111111100000110 0000 0
Q ss_pred CCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCC---CCc--cccchhhhhHHHHHHHHHhhhhhhhhhcccCCC
Q 016317 164 TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQD 238 (391)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~ 238 (391)
............++|+..+||+.|+.+|++....|+..+ +++ +++.+|+...+..+..++|+..-......-+++
T Consensus 202 ~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~ 281 (443)
T PRK13629 202 TGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQ 281 (443)
T ss_pred cccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 001112245788899999999999999999998544322 233 567779999999999999997655555544432
Q ss_pred C-------chhhhccc----CC---c-----hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhh----h-cCCCCch
Q 016317 239 V-------DDNVLMAL----KR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK----R-MNFPPGA 294 (391)
Q Consensus 239 ~-------~~~il~n~----~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~----~-~~~~~~~ 294 (391)
. +.+++..+ ++ . .+...+..+...+.+.+||--.....+|.++.+..+ . ++..+.+
T Consensus 282 ~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~ 361 (443)
T PRK13629 282 NMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLG 361 (443)
T ss_pred HHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHH
Confidence 1 11222222 22 1 345667777888899999999999999999998842 1 1112344
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 016317 295 AVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTI 374 (391)
Q Consensus 295 ~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~ 374 (391)
..+.....+..+.+..++..-|++-.++.-.|+---+.+.|++|...-+|.-.-++.+ .+..|++++++|++......|
T Consensus 362 ~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 362 KLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHH
Confidence 5566677788888999999999998888877777778999999997655543222211 123589999999987765554
Q ss_pred H
Q 016317 375 G 375 (391)
Q Consensus 375 ~ 375 (391)
.
T Consensus 441 ~ 441 (443)
T PRK13629 441 K 441 (443)
T ss_pred h
Confidence 3
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.63 E-value=5.3e-15 Score=141.50 Aligned_cols=355 Identities=10% Similarity=0.044 Sum_probs=228.7
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeee
Q 016317 2 PWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMV 81 (391)
Q Consensus 2 P~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i 81 (391)
|-...+ .||+..++..++.+.+++++..++.|.....+. +..++.|++++.+||++| .+..+...+..+..+.+|..
T Consensus 25 P~~ag~-~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii~~lY~~~~~~i~~aY~~ 101 (397)
T TIGR00814 25 PIQAGL-GGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILITLLYFFAIYPILLIYSV 101 (397)
T ss_pred HHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444334 499999999999999999999999997543322 134999999999998655 78899999999999999999
Q ss_pred eccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Q 016317 82 TGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAY 161 (391)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 161 (391)
..++.+.+...+...... ..+....+..++..-....+..+.+.+++.+-....+....+.......+-..+.. .
T Consensus 102 ~~~~~~~~fl~~~~~~~~--p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L--~- 176 (397)
T TIGR00814 102 AITNDSASFLVNQLGTAP--PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANL--T- 176 (397)
T ss_pred HHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--h-
Confidence 999998888776532211 12222222222222233344666666666655543332222222222111101111 0
Q ss_pred cCCC-CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCc--cccchhhhhHHHHHHHHHhhhhhhhhhcccCCC
Q 016317 162 KHTS-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQD 238 (391)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~ 238 (391)
..+ ....+.+...+.++..+||.+|+.+|++..+.|+..+||+ +++.+|+...+..+..++|+..-.......+++
T Consensus 177 -~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~ 255 (397)
T TIGR00814 177 -TFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPA 255 (397)
T ss_pred -cCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 011 1224578999999999999999999999833322123333 556679999999999999987766655555543
Q ss_pred Cc-----hh--hhccc---CCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh-c---CCCCchhHHHHHHHHH
Q 016317 239 VD-----DN--VLMAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR-M---NFPPGAAVRVVARSAY 304 (391)
Q Consensus 239 ~~-----~~--il~n~---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 304 (391)
.- +| ++..+ .+..+...+....-.+.+..|+--.....+|.+++.+.+. + +..+++..+.....+.
T Consensus 256 ~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (397)
T TIGR00814 256 EAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFI 335 (397)
T ss_pred HHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence 21 11 22211 1234566677778888999999999999999999988321 1 1123344555666777
Q ss_pred HHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 016317 305 VAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGV 366 (391)
Q Consensus 305 ~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~ 366 (391)
.+.+..++..-|++-.++.-.|+---+.+.|++|...-+|.-.-++.+ .+..++++++.|+
T Consensus 336 ~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~ 396 (397)
T TIGR00814 336 VLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL 396 (397)
T ss_pred HHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence 788999999999988888877777778899999997655543222111 1134666666654
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.99 E-value=1.3e-07 Score=92.81 Aligned_cols=206 Identities=9% Similarity=0.005 Sum_probs=109.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- .+++..++.++..........|...+.|+.. ..-+..++.+||+.| ++.....++.......+......+.+..
T Consensus 37 G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~ 112 (438)
T PRK10655 37 GT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFGKSGN-FMANYTYGVSLLIANVAIAISAVGYGTE 112 (438)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4566677777777777777777665555433 456677899998766 6666655444333222222222222222
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhh--cCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCc
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLS--QLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSA 167 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~--~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 167 (391)
.++. ..+.....++...++..+. -.+..+....+..+.....+...++..+.......+++.+...+ ....
T Consensus 113 ~~~~------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~-~~~~ 185 (438)
T PRK10655 113 LFGA------TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWN-PHHL 185 (438)
T ss_pred hccc------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcC-ccCC
Confidence 2211 1111111222222222222 23344555555444443322211111111111111111111111 1112
Q ss_pred chHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh
Q 016317 168 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 231 (391)
Q Consensus 168 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g 231 (391)
..+.++..++....|+|.|-......-+|. |||+| +.+|++..+..+..++|++.....
T Consensus 186 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 186 PFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 234677778889999999999999999997 89987 789999999999999999865543
No 17
>TIGR00909 2A0306 amino acid transporter.
Probab=98.97 E-value=3.7e-08 Score=96.53 Aligned_cols=317 Identities=13% Similarity=0.012 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
+++..++.++........+.|...+.|+.. ..-+..++.+||+.| ++.....++.....+..+....++.+..+.+.
T Consensus 38 ~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~ 114 (429)
T TIGR00909 38 VILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPG 114 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777888776666532 445677788998766 67777776666666666666666776666553
Q ss_pred HhcCCCC------Ccchh--hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCC
Q 016317 94 ACSHCKP------LRQTF--WILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTS 165 (391)
Q Consensus 94 ~~~~~~~------~~~~~--~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 165 (391)
.....+. .+... +..+...++.-....+..+...+++.+.....+...++..+....+...+ +++. .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~--~- 189 (429)
T TIGR00909 115 VGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASN--NYTP--F- 189 (429)
T ss_pred ccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCC--C-
Confidence 1100000 00001 11122222333334456777777777666654433222222222221111 1111 1
Q ss_pred CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC--Cch--
Q 016317 166 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD--VDD-- 241 (391)
Q Consensus 166 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~--~~~-- 241 (391)
.+....++..++....++|.+........+|+ |||+| +.+|+...+..+..++|...........+.+ .++
T Consensus 190 ~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~ 264 (429)
T TIGR00909 190 MPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTA 264 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCc
Confidence 12345678888999999999999999999997 88875 7789999999999999998765544322211 111
Q ss_pred ---hhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHHHHHH
Q 016317 242 ---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLF 310 (391)
Q Consensus 242 ---~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 310 (391)
.+..+.. .++...+..+...++...+.--......+.+...-+.+ .|.+.+...+...-.. .++.+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~ 341 (429)
T TIGR00909 265 PLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAAL 341 (429)
T ss_pred HHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHH
Confidence 1112222 23444456666666666666555544444444333211 0111122222111111 11111
Q ss_pred HHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCC
Q 016317 311 VGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 311 ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
+ ....+++.+.++.+- ...+.|++.++-.++.+|++
T Consensus 342 ~-~~~~~~~~l~~~~~~--~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 342 L-ASLVPLEGLAELTSI--GTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred H-HHHcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 1 223456777665432 23566777766666665443
No 18
>PRK11021 putative transporter; Provisional
Probab=98.90 E-value=1.5e-06 Score=84.62 Aligned_cols=314 Identities=12% Similarity=0.146 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHH
Q 016317 13 PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 92 (391)
Q Consensus 13 ~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 92 (391)
.+++..++.++..........|...+.|+.. .....+++.+||++| +......+........+......+.+...
T Consensus 33 ~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~-- 107 (410)
T PRK11021 33 NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRLG-RVTGWLFLSVIPVGLPAALQIAAGFGQAL-- 107 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 3566777777777777888888776666554 566788889999877 56565544322111111111111222211
Q ss_pred HHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHH
Q 016317 93 MACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFR 172 (391)
Q Consensus 93 ~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (391)
.+. .... .....+....++-+.-.+..|..++++....+..+.. +.......+..+.+ .+..+ ..+.++.+
T Consensus 108 --~~~-~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~--~~~~~-~~~~~~~~ 178 (410)
T PRK11021 108 --FGW-SSWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL--VVAIWWAGDIKPAD--IPFPA-PGSIEWSG 178 (410)
T ss_pred --cCC-CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHcCCchhc--CCCCC-CCCccHHH
Confidence 111 1111 1111111122222223445555555554433322211 11111111111111 11111 12335678
Q ss_pred HHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh--hhcccCCCCc--hh---hhc
Q 016317 173 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI--GYWAFGQDVD--DN---VLM 245 (391)
Q Consensus 173 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~--gy~~fg~~~~--~~---il~ 245 (391)
+..++....|+|.|.......-+|+ |||+| +.+|+...+..++.++|...... +...++|..+ +. +..
T Consensus 179 ~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (410)
T PRK11021 179 LFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFV 253 (410)
T ss_pred HHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHH
Confidence 8899999999999999999999997 89987 78999999999999999987654 2333333211 11 111
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhh--------hcCCCCchhHHHHH-HHHHHHHHHHHH-hhc
Q 016317 246 ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK--------RMNFPPGAAVRVVA-RSAYVAFTLFVG-VTF 315 (391)
Q Consensus 246 n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~ia-~~i 315 (391)
..-. .+...+..+...+..+.+.........+.+...-+. +.| +++...+... ...+..+..++. ..-
T Consensus 254 ~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~ 331 (410)
T PRK11021 254 QLFG-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALG 331 (410)
T ss_pred HHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 122223333344444444433232222222222211 011 1122222222 222222222221 223
Q ss_pred ccchhhhhhhhccccchhHhhhHHHHHHHHhCCC
Q 016317 316 PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 316 p~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
.+++.+.++.. ....+.|.++.+-.++++|++
T Consensus 332 ~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 332 LNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred cCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 57777777644 335688888888888877654
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.88 E-value=3e-07 Score=91.18 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCC-cccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 15 TMVLVISWVTTLNTMWQMINLHECVPG-VRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 15 ~i~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
++..++.++..........|...+.|+ .. ..-+..++.+||++| ++.....+........++.....+.+..+++.
T Consensus 44 ~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~ 120 (473)
T TIGR00905 44 IIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREGFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL 120 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566666666666777776665665 32 345567899999766 66666655444433444444444444444432
Q ss_pred HhcCCCCCcchhhHHHHHHH--HHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhh--hcccccccccccccCCC-Ccc
Q 016317 94 ACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGS--LSHGRIENVSYAYKHTS-SAD 168 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~--~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~-~~~ 168 (391)
.. ........+....+ +.-..-.+..+..+.+..+.....+...++..+.. ..+......+...+..+ ...
T Consensus 121 ~~----~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~ 196 (473)
T TIGR00905 121 FG----SGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGS 196 (473)
T ss_pred hc----CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccc
Confidence 11 11111111222222 22223345666666666655544332111111111 11111100011111011 122
Q ss_pred hHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhh
Q 016317 169 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 232 (391)
Q Consensus 169 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy 232 (391)
.+..+..++....|+|.|-.......+|+ || +|+.+|+...+..++.++|........
T Consensus 197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999997 77 448889999999999999998766543
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.86 E-value=4.4e-07 Score=89.26 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=109.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
.|+..-++..++.++........+.|...+.|+.. ..-..+++.+||++| +++....+........++....++.++
T Consensus 37 ~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~ 113 (442)
T TIGR00908 37 GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAFGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCE 113 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35532233444455555555666777666666543 556677899998766 666766666555555555555555554
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-cccccCC--C
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENV-SYAYKHT--S 165 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~--~ 165 (391)
.+++. .....+.++...+.. +.-.+..+..+++........+....+.......+..+.+. ..+..+. .
T Consensus 114 ~~~p~-------~~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (442)
T TIGR00908 114 SLFPV-------GPGWLAALVFYIVFI-GINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSF 185 (442)
T ss_pred HHhcc-------CchhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCC
Confidence 44322 111222222111111 11223444444444333332221111111111111001110 0000001 1
Q ss_pred CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhh
Q 016317 166 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 229 (391)
Q Consensus 166 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~ 229 (391)
.+..+.++..++....++|.|.......-+|+ |||+| +.+|++..+..++.++|...-.
T Consensus 186 ~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 186 LPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence 12234577888889999999999999999997 89987 7889999999888888876533
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.85 E-value=1.2e-06 Score=86.23 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 15 TMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 15 ~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
+...++.++........+.|.....|+.. ..-+.+++.+||++| +++....++.......+......+....+.+..
T Consensus 43 ~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (445)
T PRK10644 43 IYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL 119 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444555555566677655555432 334458889998766 555555444332222222222222222222110
Q ss_pred hcCCCCCcchhhHHHHHHHHHHhh--cCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHH
Q 016317 95 CSHCKPLRQTFWILIFGSLHFFLS--QLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFR 172 (391)
Q Consensus 95 ~~~~~~~~~~~~~ii~~~~~~pl~--~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (391)
. +.....++...++..+. -.+..|....+..+.....+..+.+..........++.....+ +......+..
T Consensus 120 -----~-~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 192 (445)
T PRK10644 120 -----K-DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAW-NVSGLGTFGA 192 (445)
T ss_pred -----C-CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCc-cccccchHHH
Confidence 0 11111122222222222 2334555555555544433221111111111111111111111 0111234556
Q ss_pred HHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhh
Q 016317 173 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 232 (391)
Q Consensus 173 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy 232 (391)
+..++....|+|.|-.......+|+ |||+| +.+|++..+..++.++|.+..+...
T Consensus 193 ~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 193 IQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999999997 99988 7899999999999999998876543
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.83 E-value=6.6e-07 Score=88.65 Aligned_cols=324 Identities=15% Similarity=0.118 Sum_probs=157.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|....++..++.++..........|...+.|+.. ...-+.+++.+||..| +++....++.......++.....+.+..
T Consensus 33 g~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~ 110 (468)
T TIGR03810 33 AAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGY 110 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322344556666666667777777666565421 0234558899998766 6666655544333333333332233322
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHH--HHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHh--hhhccccccccc-cccc--
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWA--GSLSHGRIENVS-YAYK-- 162 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~--~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~--~~~~~~~~~~~~-~~~~-- 162 (391)
+++... ........++...+ .+-..-.+..+..+.++.+.....+...++.++ ....++.....+ ++..
T Consensus 111 ~~p~~~----~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~ 186 (468)
T TIGR03810 111 FFPIFG----GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANG 186 (468)
T ss_pred hccccc----CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccc
Confidence 222110 11111111211111 222222355566666555544433221111111 111111110000 1100
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC----
Q 016317 163 HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD---- 238 (391)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~---- 238 (391)
..+......++..++....|+|.|-.......+|. || +|+.+|++..+.....++|.......+...+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~ 260 (468)
T TIGR03810 187 GFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAG 260 (468)
T ss_pred cCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhc
Confidence 01112234566678889999999988877777775 55 457889999999999999998877655443321
Q ss_pred Cchh----hhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHH
Q 016317 239 VDDN----VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVA 306 (391)
Q Consensus 239 ~~~~----il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 306 (391)
.+++ +..+.- .++...+..+...++.+.+.--.....-+.....-+.. .| +++...+...-...+.
T Consensus 261 ~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~ 338 (468)
T TIGR03810 261 LKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLI 338 (468)
T ss_pred CCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHH
Confidence 1111 122221 13445566666666666666555544433333332111 11 1222333332222222
Q ss_pred HHHHHHhhc--ccchhhhhhhhccccchhHhhhHHHHHHHHhCCC
Q 016317 307 FTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 307 ~~~~ia~~i--p~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
..+.+.... +.++.+.++.+. ...+.|+++++.+++.++++
T Consensus 339 ~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 339 QIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 111111112 235555555433 45789999999888887554
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=98.82 E-value=1.5e-06 Score=85.80 Aligned_cols=319 Identities=12% Similarity=0.060 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
.++..++.+++......-+.|.....|... .+.+.+++.+||++| +++....++.......+.....+..++.
T Consensus 45 ~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~---- 117 (461)
T PRK10746 45 VLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRYMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQF---- 117 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445666677777777888888766666544 778899999999877 6767666555443333333322222222
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH---HH-HHHHHHHhhh-hccccc---cccc-ccccCC
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM---SL-SYSTIAWAGS-LSHGRI---ENVS-YAYKHT 164 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~---~~-~~~~i~~~~~-~~~~~~---~~~~-~~~~~~ 164 (391)
+.+ ......+..+..++..- .-.+..+....+....... .+ .+.++.+... ...+.. .+.+ +..+..
T Consensus 118 ~~p---~~~~~~~~~~~~~~~~~-lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g 193 (461)
T PRK10746 118 WFP---EMAQWIPALIAVALVAL-ANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGG 193 (461)
T ss_pred ccC---CCchHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCC
Confidence 211 12222333222222111 1122333333332221111 11 1111111110 011111 1111 111000
Q ss_pred CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC-Cc---
Q 016317 165 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD--- 240 (391)
Q Consensus 165 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~-~~--- 240 (391)
..+..+.++..++....|+|.+-..+.....|. |||+| +++|+...+.....++|...........+.+ .+
T Consensus 194 ~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~ 268 (461)
T PRK10746 194 FFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNG 268 (461)
T ss_pred cCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCC
Confidence 112346788899999999999999999999997 99997 7899998888888888887544333333321 11
Q ss_pred hhh---hcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhc-------CCCCchhHHHHH-HHHHHHHHH
Q 016317 241 DNV---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-------NFPPGAAVRVVA-RSAYVAFTL 309 (391)
Q Consensus 241 ~~i---l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~ 309 (391)
++. ..+... .....+.+....+..+.+.--..+...+.+...-+.+. .++++...+.+. .....++..
T Consensus 269 sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~ 347 (461)
T PRK10746 269 SPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGS 347 (461)
T ss_pred CcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 111 112211 12233445555555555554444444444443332111 011122222222 222222233
Q ss_pred HHHhhcccchhhhhhhhccc--cchhHhhhHHHHHHHHhCCC
Q 016317 310 FVGVTFPFFGDLLGFFGGFG--FTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 310 ~ia~~ip~~~~v~~l~Ga~~--~~~l~~ilP~l~~l~~~~~~ 349 (391)
.+....|+-+.+++...+.+ +..+.++++++.+++.+|++
T Consensus 348 ~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 348 CLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445565555555444332 34788888988888887654
No 24
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.76 E-value=7.9e-07 Score=87.53 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh
Q 016317 170 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 231 (391)
Q Consensus 170 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g 231 (391)
+.++..++....|+|.+-.......+|+ |||+| +.+|++..+..++.++|.......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999997 99987 788999999999999999876543
No 25
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.75 E-value=5.8e-07 Score=87.95 Aligned_cols=322 Identities=16% Similarity=0.113 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHH-HHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHH
Q 016317 14 GTMVLVISWVTT-LNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 92 (391)
Q Consensus 14 g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 92 (391)
+++..++.+.+. ........|...+.|++. ..-+..++.+||++| ++..............++.....+.+...+.
T Consensus 32 ~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (426)
T PF13520_consen 32 AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFWG-FIVGWLYWVAYILSLASVASSFASYLLSLFG 108 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccch-hcccceeEEEeeccccccccchhhhhhhccc
Confidence 343334443443 345555566554455443 667888999999877 6666666665555554444433333333221
Q ss_pred HHhcCCCCCcchhhHHHH--HHHHHHhhcCCCCchhhHHHHHHHHHHHH-HHHHHHhhhhccccccccc---ccccCCCC
Q 016317 93 MACSHCKPLRQTFWILIF--GSLHFFLSQLPDINSVSSVSLAAAVMSLS-YSTIAWAGSLSHGRIENVS---YAYKHTSS 166 (391)
Q Consensus 93 ~~~~~~~~~~~~~~~ii~--~~~~~pl~~~~~~~~l~~~s~~~~~~~~~-~~~i~~~~~~~~~~~~~~~---~~~~~~~~ 166 (391)
... ..+.....++. ..+..-....+..|..++++.......+. ...+.++.......++..+ .+.+ ...
T Consensus 109 ~~~----~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 183 (426)
T PF13520_consen 109 PDL----NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLS-TFF 183 (426)
T ss_dssp GGG----TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHS-CSS
T ss_pred ccc----ccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccccccccccccc-ccC
Confidence 100 01111222222 22223333445667777776666655442 2222222222211111111 0011 111
Q ss_pred cchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCc---hhh
Q 016317 167 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---DNV 243 (391)
Q Consensus 167 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~---~~i 243 (391)
+........+++..+|+|.|-...+...+|+ || |+.+|+...+..++.++|...........+++.. ++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~ 256 (426)
T PF13520_consen 184 PSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNS 256 (426)
T ss_dssp CSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCH
T ss_pred CccccchhhHHHHHHhhcccccccccccccc----cc---hhheeecccchhHHHHHHhhhhheeeecccchhhhccccc
Confidence 1122346888999999999999999999985 44 4788999999999999999987766555554311 121
Q ss_pred h---ccc---CCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhc------CC-CCchhHHHHHHHHHHHHHHH
Q 016317 244 L---MAL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------NF-PPGAAVRVVARSAYVAFTLF 310 (391)
Q Consensus 244 l---~n~---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~ 310 (391)
. ..+ ....+...+..+...+..+.+.........+.+...-+++. +. +.+...+...-...+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~ 336 (426)
T PF13520_consen 257 PSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILL 336 (426)
T ss_dssp HCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred ccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHH
Confidence 1 111 11135555666777777777777666666666666554321 11 11122222222222211111
Q ss_pred HHh-hcc--cchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCc
Q 016317 311 VGV-TFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFS 352 (391)
Q Consensus 311 ia~-~ip--~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~ 352 (391)
+.. ..| +++.+.+.. .....+.++++.+..++.+++++..
T Consensus 337 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 337 LLFLFIPQSSFDILVSLS--SVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp HHTTTSSSSHHHHHHHHH--HHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred HHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 111 234 345555543 3334677777777766666555433
No 26
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.74 E-value=1.4e-06 Score=92.44 Aligned_cols=219 Identities=14% Similarity=0.167 Sum_probs=125.4
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHHHHHHhCccc-CCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeee
Q 016317 2 PWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHEC-VPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYM 80 (391)
Q Consensus 2 P~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~ 80 (391)
+|.+-+. |...+++..++.++++..+..-+.+...+ .++.. -.|. ..++++|+.+| ..+.+..++.+...+..|.
T Consensus 102 ~~Vvg~a-G~~~sll~~~la~~vtlltaLS~seiaTng~p~aG-G~Y~-yisralGp~~G-f~iG~~~~la~~va~A~~~ 177 (953)
T TIGR00930 102 SWIVGQA-GIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG-GAYY-LISRSLGPEFG-GSIGLIFAFANAVAVAMYV 177 (953)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-HHHH-HHHHHhCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555554 87778888888888888888777775543 22211 1333 45667798777 6777777777777778888
Q ss_pred eeccccHHHHHHHHhcC--CCCC-cchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccc-cc-
Q 016317 81 VTGGKCLKKFVEMACSH--CKPL-RQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGR-IE- 155 (391)
Q Consensus 81 i~~~~~l~~~~~~~~~~--~~~~-~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~- 155 (391)
+..++.+..+++..... ..+. ..+.+.++..+++.-+. ....+..+.++.+..++.++..+.+++....... .+
T Consensus 178 ~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~ 256 (953)
T TIGR00930 178 VGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPA 256 (953)
T ss_pred HHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCc
Confidence 88888877776542100 0011 12222222222222222 2344444444444443322211111111111100 00
Q ss_pred -c-cccccc----C-CCCcch-HHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhh
Q 016317 156 -N-VSYAYK----H-TSSADY-MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV 227 (391)
Q Consensus 156 -~-~~~~~~----~-~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~ 227 (391)
+ ..++.+ + .+.... ..++...++++.+||.|.......-.|+ |||++ ++++++..+..++.++|+++
T Consensus 257 ~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl----KnP~r-~IPratl~ai~i~~vlYllv 331 (953)
T TIGR00930 257 KGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL----KDPQK-AIPKGTLLAILTTTVVYLGS 331 (953)
T ss_pred cceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhh-hhHHHHHHHHHHHHHHHHHH
Confidence 0 000000 0 011111 1237778888888999988888888887 99997 89999999999999999998
Q ss_pred hhh
Q 016317 228 ALI 230 (391)
Q Consensus 228 g~~ 230 (391)
.+.
T Consensus 332 ~~~ 334 (953)
T TIGR00930 332 VVL 334 (953)
T ss_pred HHH
Confidence 764
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=98.74 E-value=1.4e-06 Score=86.09 Aligned_cols=317 Identities=12% Similarity=0.124 Sum_probs=155.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- ..++..++.++.......-+.|...+.|... ...+.+++.+||++| +++....++.......+.....+..+
T Consensus 53 Gp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~-- 126 (458)
T PRK10249 53 GP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKYWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYM-- 126 (458)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 54 3666777778888888888888776666654 677789999999776 66666655543322222222111111
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH---HHHHHHHHHhhhhccccc---ccccccccC
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM---SLSYSTIAWAGSLSHGRI---ENVSYAYKH 163 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~---~~~~~~i~~~~~~~~~~~---~~~~~~~~~ 163 (391)
+...+ +.....+.++.. .++-..-.+..+..+.+.....+. .++..++........+.+ .+.+..+++
T Consensus 127 --~~~~~---~~~~~~~~~~~~-~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 200 (458)
T PRK10249 127 --QYWFP---DVPTWIWAAAFF-IIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRY 200 (458)
T ss_pred --HHcCC---cCcHHHHHHHHH-HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCC
Confidence 11111 112222222221 112222233444444443332221 111111111111111111 111111111
Q ss_pred C-CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCC---
Q 016317 164 T-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV--- 239 (391)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~--- 239 (391)
. ..+..+.++..++....|+|.|-.......+|+ |||+| +.+|+...+.....++|...........+++.
T Consensus 201 ~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k-~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 275 (458)
T PRK10249 201 GGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK-SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKS 275 (458)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCc
Confidence 1 112346678899999999999999999999997 89998 78999999999999999875443333323211
Q ss_pred -chhhh---cccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHH-HHHHHHH
Q 016317 240 -DDNVL---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVV-ARSAYVA 306 (391)
Q Consensus 240 -~~~il---~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~ 306 (391)
+++.. .+... ++...+......+..+.+..-......+.+...-+.. .+ +.+...+.+ ....+..
T Consensus 276 ~~~p~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~ 353 (458)
T PRK10249 276 NSSPFVMIFHNLDS-NVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITS 353 (458)
T ss_pred cCCcHHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHH
Confidence 11111 11111 2333344444444444444333333333322222110 01 112222222 2222222
Q ss_pred HHHHHHhhccc--chhhhhhhhccccchhHhhhHHHHHHHHhC
Q 016317 307 FTLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 347 (391)
Q Consensus 307 ~~~~ia~~ip~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 347 (391)
+..++....|+ ++.+.++.+ ....+.|++|++.+++.+|
T Consensus 354 l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 354 LVVLINYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 22222223332 444444432 2457899999999988874
No 28
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.74 E-value=3.1e-06 Score=83.01 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
.+...++.++..........|...+.|+.. ..-+.+++ +||++| +.+....+..+.....++.+...+.+...++.
T Consensus 39 ~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~ 114 (435)
T PRK10435 39 AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-ISPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPV 114 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-HCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344555555666666666777665566543 43445566 698777 56655544333222223323333333333221
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHHH
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRV 173 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (391)
.. .+.....+. +....++-+.-.+..|..+.++.+.....+...............++....+++ .+.+....++
T Consensus 115 ~~---~~~~~~~~~-~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~ 189 (435)
T PRK10435 115 LN---DPIPAGIAC-IAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAI 189 (435)
T ss_pred cC---ChHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHH
Confidence 10 011111111 111111112233444555555544444322211111111111111111111111 1223456789
Q ss_pred HHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhccc
Q 016317 174 FNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAF 235 (391)
Q Consensus 174 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~f 235 (391)
..++....|+|.|-.......+|+ |||+| +.+|+...+..++.++|+..........
T Consensus 190 ~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 190 IKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999997 99987 7889999999999999998776544333
No 29
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.72 E-value=5.8e-07 Score=85.14 Aligned_cols=315 Identities=14% Similarity=0.113 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHh
Q 016317 16 MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC 95 (391)
Q Consensus 16 i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 95 (391)
+.-.+.+++.+.=++.|.|...++|..+ ++.|.+++.+|++.| +++...-+..-...+.+-+.-++..++.++++
T Consensus 50 LaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-- 124 (462)
T COG1113 50 LAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKYLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-- 124 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 3456777888888899999877666654 999999999999655 77788877777767666666666666655443
Q ss_pred cCCCCCcchhhHHHHHH--HHHHhhcCCCCchhhHHHHHHHHHHHHHHHH---HHhhhhcccc--cccccccccCC-CCc
Q 016317 96 SHCKPLRQTFWILIFGS--LHFFLSQLPDINSVSSVSLAAAVMSLSYSTI---AWAGSLSHGR--IENVSYAYKHT-SSA 167 (391)
Q Consensus 96 ~~~~~~~~~~~~ii~~~--~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i---~~~~~~~~~~--~~~~~~~~~~~-~~~ 167 (391)
.+++.+.++..+ ..+=+...|.+.++.+.-.+=-+..+...++ ..+.....+. ..+++.-+++. -.+
T Consensus 125 -----vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP 199 (462)
T COG1113 125 -----VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFP 199 (462)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCC
Confidence 234445544433 3333556677777655444332222221111 1111111111 22333222211 146
Q ss_pred chHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhh-----hhhhhhhcccCCCCch-
Q 016317 168 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF-----PVALIGYWAFGQDVDD- 241 (391)
Q Consensus 168 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~-----~~g~~gy~~fg~~~~~- 241 (391)
+.+.+++.++-+.+|||++...+---..|- |||+| ..+|+..--..=..++|+ +..+.-+-.++++.++
T Consensus 200 ~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPF 274 (462)
T COG1113 200 NGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPF 274 (462)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcH
Confidence 678899999999999999988877777775 89998 667776654444445554 4566666666664444
Q ss_pred -hhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcC-------CCCc-hhHHHHHHHHHHHHHHHHH
Q 016317 242 -NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-------FPPG-AAVRVVARSAYVAFTLFVG 312 (391)
Q Consensus 242 -~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~ia 312 (391)
.+...+.- .+...+.+.....+...+.---.+..-.++..+-.+.+. ++++ ...-.........+++++.
T Consensus 275 V~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Ln 353 (462)
T COG1113 275 VTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLN 353 (462)
T ss_pred HHHHHHcCC-cccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 22223322 123333443333333333333344444555444322110 0112 2344556666777888888
Q ss_pred hhccc--chhhhhhhhccccchhHhhhHHHHHHHHhCC
Q 016317 313 VTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 313 ~~ip~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 348 (391)
...|+ |+.+.+..+.. ....+.+=.+.|+|.+|.
T Consensus 354 y~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 354 YILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRKA 389 (462)
T ss_pred hhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 99993 44444443333 345555566778888873
No 30
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.71 E-value=2.8e-06 Score=83.58 Aligned_cols=317 Identities=12% Similarity=0.062 Sum_probs=162.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- .+++..++.++..........|...+.|+.. ..-+.+++.+||++| +++....+......+.+.....+.
T Consensus 24 G~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~---- 95 (446)
T PRK10197 24 GP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLYWWFWVLVIPLEANIAAM---- 95 (446)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 54 4677777888888888888888776666543 677888899999777 666666555433322221111111
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhh--hhcccc-cc----ccccccc
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAG--SLSHGR-IE----NVSYAYK 162 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~--~~~~~~-~~----~~~~~~~ 162 (391)
..+.+.+ ......+.++..++.. +.-.+..|..+.+........+...+..++. ....+. +. +.+..++
T Consensus 96 ~~~~~~~---~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~ 171 (446)
T PRK10197 96 ILHSWVP---GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWD 171 (446)
T ss_pred HHHhccc---cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCC
Confidence 1121111 1122222222222221 1123344444444444333222111111111 111111 11 1000010
Q ss_pred C-CCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC-Cc
Q 016317 163 H-TSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD 240 (391)
Q Consensus 163 ~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~-~~ 240 (391)
+ ...+..+.++..++....|+|.|-........|+ |||+| +++|++..+.....++|+...+.....-..+ .+
T Consensus 172 ~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~ 246 (446)
T PRK10197 172 SGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPG 246 (446)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCccc
Confidence 0 0113345689999999999999999999999997 89987 7889998888888899987655422222211 11
Q ss_pred ----h---hhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHH-H
Q 016317 241 ----D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSA-Y 304 (391)
Q Consensus 241 ----~---~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~ 304 (391)
+ ........ .+...+.+....++.+.+..-..+...+.+...-+.. .+ +.+...+...-.. .
T Consensus 247 ~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~ 324 (446)
T PRK10197 247 LKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGA 324 (446)
T ss_pred ccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHH
Confidence 1 12222322 2344455555566666665555554444444333211 01 1222333332222 2
Q ss_pred HHHHHHHHhhcc--cchhhhhhhhccccchhHhhhHHHHHHHHhC
Q 016317 305 VAFTLFVGVTFP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 347 (391)
Q Consensus 305 ~~~~~~ia~~ip--~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 347 (391)
.++..+.....| .++.++++.+... .+.|+++++.+++.+|
T Consensus 325 ~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 325 AFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 222222222233 3667777765555 4888888888887765
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.69 E-value=3.1e-06 Score=83.96 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
.++..++.+++......-+.|...+.|+.. .+-+.+++.+||++| +.+....++.....+.+.....+..+ +.
T Consensus 50 ~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~----~~ 122 (471)
T PRK11387 50 TLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARYLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCM----QY 122 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 355666677777777777788766666543 566788889998766 56665555443332222111111111 11
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHH--HHHh-hhh---cc---ccc-cccc-cccc
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYST--IAWA-GSL---SH---GRI-ENVS-YAYK 162 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~--i~~~-~~~---~~---~~~-~~~~-~~~~ 162 (391)
..+ ......+.++..++.. +.-.+..|.............+...+ ++.. ... .. +.+ +..+ ++.+
T Consensus 123 ~~p---~~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (471)
T PRK11387 123 WFP---QVPVWPWCLLFCALIF-GLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAE 198 (471)
T ss_pred ccC---cCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCC
Confidence 111 1121222222222211 22223444444333222221111111 1110 000 00 000 0000 1100
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccC
Q 016317 163 HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 236 (391)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg 236 (391)
+. .+....++..++....|+|.|-......-+|. |||+| +++|++..+..+..++|...........+
T Consensus 199 ~~-~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 199 GW-FPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred CC-CcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 00 02234567788888999999999999999997 99987 78999999999999999887664433333
No 32
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.67 E-value=6.2e-06 Score=81.73 Aligned_cols=321 Identities=12% Similarity=0.020 Sum_probs=150.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
.|- ..+...++.+++......-+.|.....+.. .++.+.+++.+||..| +++....++.......+.....+..++
T Consensus 51 aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~--~~~~~ya~~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~ 126 (469)
T PRK11049 51 AGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY--KSFSDFASDLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQ 126 (469)
T ss_pred cCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 345555566666666666666654322322 2567899999998766 777776665443222222222222222
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhh---hcccc--ccc----ccc
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGS---LSHGR--IEN----VSY 159 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~---~~~~~--~~~----~~~ 159 (391)
. ..+ ......+.++...+.. ..-.+..+....++.+.....+...++.++.. ...+. +++ .+.
T Consensus 127 ~----~~p---~~~~~~~~~~~~~~~~-~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~ 198 (469)
T PRK11049 127 F----WFP---DLSDWVASLAVVLLLL-SLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAH 198 (469)
T ss_pred H----hcC---CCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc
Confidence 2 211 1222222222211111 12223445555554443332221111111110 11110 111 110
Q ss_pred cccCCC-CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCC-
Q 016317 160 AYKHTS-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ- 237 (391)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~- 237 (391)
.++... .+..+.++..++....|+|.|-.......+|+ |||+| +++|+...+.....++|..........-+.
T Consensus 199 ~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~ 273 (469)
T PRK11049 199 LWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDPEK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWS 273 (469)
T ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCcc
Confidence 011111 12345678899999999999999999999997 89987 788999877777788888655543322221
Q ss_pred CCc---hhhh---cccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHH
Q 016317 238 DVD---DNVL---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSA 303 (391)
Q Consensus 238 ~~~---~~il---~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 303 (391)
+.. ++.. ..... .+...+..++..++.+.+.-.......+.+...-+.+ .+ +++...+......
T Consensus 274 ~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~ 351 (469)
T PRK11049 274 SVVPDKSPFVELFVLVGL-PAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSC 351 (469)
T ss_pred ccCccCCcHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHH
Confidence 111 1111 11111 2333344444445444444333332222222222111 01 1122233332222
Q ss_pred HH-HHHHHHHhhcccchhhhhhhhccc--cchhHhhhHHHHHHHHhCC
Q 016317 304 YV-AFTLFVGVTFPFFGDLLGFFGGFG--FTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 304 ~~-~~~~~ia~~ip~~~~v~~l~Ga~~--~~~l~~ilP~l~~l~~~~~ 348 (391)
.+ .+...+....|+....++.+-+++ ...+.|+++.+-+++.+|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 352 ICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 222333344566444454433322 3457788888888887655
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.67 E-value=6.5e-06 Score=81.27 Aligned_cols=318 Identities=13% Similarity=0.133 Sum_probs=154.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- ..++..++.++.......-+.|...+.|... .+-+.+++.+||..| +++....++.....+.+.....++.++.
T Consensus 44 Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~ 119 (456)
T PRK10238 44 GP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKYWGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQF 119 (456)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3455666777777777777888766666544 667778889998655 7777776666555555444444444433
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHH---HHH-HHhh-hhcccccc-cccccccC
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY---STI-AWAG-SLSHGRIE-NVSYAYKH 163 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~---~~i-~~~~-~~~~~~~~-~~~~~~~~ 163 (391)
+. + +.....+.++...+..-+ -....|....+........+.. .++ .+.. ....+.++ ..+..++.
T Consensus 120 ~~----p---~~~~~~~~~i~~~~~~~l-N~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 191 (456)
T PRK10238 120 WY----P---EIPTWVSAAVFFVVINAI-NLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQ 191 (456)
T ss_pred hc----C---cCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCC
Confidence 21 1 122222222222211111 1223344444444333322211 111 1111 11111111 11110110
Q ss_pred CC-CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh--hhcccCCC--
Q 016317 164 TS-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI--GYWAFGQD-- 238 (391)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~--gy~~fg~~-- 238 (391)
.. .+..+.++..+++...|+|.|-.......+|+ |||+| +.+|++..+.....++|...-.. +..-+.+-
T Consensus 192 ~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~ 266 (456)
T PRK10238 192 GGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTA 266 (456)
T ss_pred CCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCC
Confidence 01 12335577778888999999999999999997 89987 78899887777777777653222 11111111
Q ss_pred Cchhh---hcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHHH
Q 016317 239 VDDNV---LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAF 307 (391)
Q Consensus 239 ~~~~i---l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 307 (391)
.+++. ..+... .+...+.+....+..+.+..-......+.+...-+.. .+ +++...+.+.-...+..
T Consensus 267 ~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~ 344 (456)
T PRK10238 267 DTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTA 344 (456)
T ss_pred CCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHH
Confidence 11111 122222 2333344455555555444443443333333332111 11 12233333322222222
Q ss_pred -HHHHHhhccc--chhhhhhhhccccchhHhhhHHHHHHHHhCC
Q 016317 308 -TLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 308 -~~~ia~~ip~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 348 (391)
..++....|+ ++.+.++.+ .+..+.|++|.+.+++.+|+
T Consensus 345 l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 345 LCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2222112232 455555533 34578999999999988764
No 34
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.64 E-value=4.8e-06 Score=82.15 Aligned_cols=206 Identities=12% Similarity=0.079 Sum_probs=113.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
.|- .+++..++.++........+.|...+.|+.. ...+.+++.+||.+| +++....++.....+.+.....++.++
T Consensus 43 ~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~ 118 (452)
T TIGR01773 43 AGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDAIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQ 118 (452)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 3667777788888888888888776666543 667888999998766 666666555544444433333333333
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH---HHHHHHhhhhcccccc-c-cccc-cc
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLS---YSTIAWAGSLSHGRIE-N-VSYA-YK 162 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~---~~~i~~~~~~~~~~~~-~-~~~~-~~ 162 (391)
.+. + +.+...+.++...+ .-..-.+..+....+.....+..+. ..++..........+. + .+.. ..
T Consensus 119 ~~~----~---~~~~~~~~~~~~~~-~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~ 190 (452)
T TIGR01773 119 YWF----P---DIPLWLFSLILTIV-LTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLT 190 (452)
T ss_pred Hhc----C---cCcHHHHHHHHHHH-HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccc
Confidence 221 1 11222222222111 1111223444444444433332211 1111111111111111 0 0010 00
Q ss_pred CCC--CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh
Q 016317 163 HTS--SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 231 (391)
Q Consensus 163 ~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g 231 (391)
+.. .+..+.++..++....|+|.|-.......+|+ |||+| +.+|+...+.....++|+......
T Consensus 191 ~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~ 256 (452)
T TIGR01773 191 GKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK-SITRATNSVIWRIIVFYLGSIFIV 256 (452)
T ss_pred CCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 101 12345678899999999999999999999997 89987 788998887888888888754433
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.61 E-value=4.9e-06 Score=83.93 Aligned_cols=320 Identities=11% Similarity=0.047 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 15 TMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 15 ~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
++..++.++.+........|...+.|+.. +.-.-.++.+|+.+| +++....++.......+.....++.+..+++..
T Consensus 65 ~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~ 141 (557)
T TIGR00906 65 VLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQ 141 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666667777777665565432 223334566898666 777776665544433333333344444443321
Q ss_pred hcC--------C-CCCcch-hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccccc-C
Q 016317 95 CSH--------C-KPLRQT-FWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYK-H 163 (391)
Q Consensus 95 ~~~--------~-~~~~~~-~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~ 163 (391)
.+. . ...... ....+..++++-....+..|..++++.+.....+...++..+.......+++...... +
T Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~ 221 (557)
T TIGR00906 142 IGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKG 221 (557)
T ss_pred ccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhcccccccc
Confidence 000 0 011111 1111111122223344677777777776665544332222222222221111110000 0
Q ss_pred C-C-CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC---
Q 016317 164 T-S-SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD--- 238 (391)
Q Consensus 164 ~-~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~--- 238 (391)
. + .+..+.+++.+.....|+|.|-......-+|. |||+| ++++++..+..++.++|..+...-...-+++
T Consensus 222 ~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~----knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~ 296 (557)
T TIGR00906 222 AGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV----KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD 296 (557)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC
Confidence 0 1 12245678889999999999999998888987 99987 7899999999999999998765433222211
Q ss_pred Cchh---hhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHHH
Q 016317 239 VDDN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAF 307 (391)
Q Consensus 239 ~~~~---il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 307 (391)
.+++ ...... .++...+..+........+....+....+.+...-+.. .|.+.+...+... ...++
T Consensus 297 ~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail--~~~iv 373 (557)
T TIGR00906 297 PDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATV--VSGAI 373 (557)
T ss_pred cCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHH--HHHHH
Confidence 1111 122222 23444455555555555544444444434443332211 0111111222221 12222
Q ss_pred HHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCC
Q 016317 308 TLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 308 ~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 348 (391)
+.+++.. .+++.+.++.. .+..+.|.+++...++++++
T Consensus 374 ~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 374 AALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 2333333 34666666542 23478999998877777643
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.61 E-value=1.2e-05 Score=79.41 Aligned_cols=201 Identities=10% Similarity=0.124 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
+++..++.++.......-+.|...+.|... ..-+.+++.+||.+| +++....++.....+.+.....+..+ +.
T Consensus 44 ~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~----~~ 116 (457)
T PRK10580 44 VLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQENLGPLAG-YITGWTYCFEILIVAIADVTAFGIYM----GV 116 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 567777777777888888888776666543 555577889998766 66666554433222222112122222 12
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHH---HH-H---HHhhhhccc-ccccccccccCC-
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY---ST-I---AWAGSLSHG-RIENVSYAYKHT- 164 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~---~~-i---~~~~~~~~~-~~~~~~~~~~~~- 164 (391)
+.+ +.....+.+...+ +.-..-.+..|....+........+.. .+ . .......+. .+.+.+..+++.
T Consensus 117 ~~~---~~~~~~~~~~~~~-l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
T PRK10580 117 WFP---TVPHWIWVLSVVL-IICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGG 192 (457)
T ss_pred hCC---CCChHHHHHHHHH-HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCC
Confidence 111 1122223222222 222223334455544443332222111 10 1 011111111 111111111111
Q ss_pred CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh
Q 016317 165 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 230 (391)
Q Consensus 165 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~ 230 (391)
..+..+.++..++....|+|.|-.......+|. |||+| +.+|++..+.....++|......
T Consensus 193 ~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k-~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 193 FFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEK-SIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred CCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 112335678888999999999999999999997 89997 78898888777777888766443
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.59 E-value=1.8e-05 Score=78.70 Aligned_cols=207 Identities=12% Similarity=0.085 Sum_probs=112.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
.|-...+...++.++.......-+.|.....|+. .-.|.+.+++.+||++| +++....++.....+.+.....+..++
T Consensus 33 ~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~ 110 (478)
T TIGR00913 33 GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQ 110 (478)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3532224556666777777777788877666632 12677889999999877 666666555544333333333333322
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---HHHHHHHhhhhccccccc--cc---cc
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL---SYSTIAWAGSLSHGRIEN--VS---YA 160 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~---~~~~i~~~~~~~~~~~~~--~~---~~ 160 (391)
. ..+ +.....|..+..+ +.-+.-.+..+..+.++.......+ +..++..+.....+.+.. .. +.
T Consensus 111 ~----~~~---~~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~ 182 (478)
T TIGR00913 111 Y----WTD---KVNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWH 182 (478)
T ss_pred H----cCC---CCCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccC
Confidence 1 111 1222233322221 1112233455555555544332211 111111111111111100 00 00
Q ss_pred -ccCCCCc---chHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh
Q 016317 161 -YKHTSSA---DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 230 (391)
Q Consensus 161 -~~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~ 230 (391)
....++. ..+.++..++....|+|.|-.......+|. |||+| +.+|++..+..+..++|......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 183 DPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----ANPRK-SIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred CCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 135778889999999999999999999997 89987 78999999999999999986544
No 38
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.59 E-value=7.2e-06 Score=81.41 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccC
Q 016317 179 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG 236 (391)
Q Consensus 179 ~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg 236 (391)
...++|.|-.......+|+ |||+| +.+|++..+..++.++|....+.....-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999997 89988 78999999999999999876555443333
No 39
>PRK15049 L-asparagine permease; Provisional
Probab=98.56 E-value=1.8e-05 Score=79.04 Aligned_cols=320 Identities=11% Similarity=0.063 Sum_probs=155.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- .+++..++.+++....+.-+.|.....|... ..-+.+++.+||++| +++....++.......+-....+..
T Consensus 60 Gp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~--- 132 (499)
T PRK15049 60 GP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFLGEKAA-YVAGWMYFINWAMTGIVDITAVALY--- 132 (499)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 54 3566777777888888888888776666544 677888999999766 5666655443222111111111111
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---HHHHHHHhhhhcccccc-----cccccc
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL---SYSTIAWAGSLSHGRIE-----NVSYAY 161 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~---~~~~i~~~~~~~~~~~~-----~~~~~~ 161 (391)
...+ +.........+.++..++.. +.-.+..|....+........+ +..++........+.+. +..+..
T Consensus 133 -~~~~-~~~~~~~~~~~~~~~~~l~~-~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~ 209 (499)
T PRK15049 133 -MHYW-GAFGGVPQWVFALAALTIVG-TMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLIT 209 (499)
T ss_pred -HHHh-ccCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccc
Confidence 1111 11111222222222222111 1122233444444333222111 11111111111111111 010000
Q ss_pred cCC-CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCC-CC
Q 016317 162 KHT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ-DV 239 (391)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~-~~ 239 (391)
++. ..+..+..+..++....|+|.|-..+.....|. |||+| +.+|++..+.....++|+..........+. +.
T Consensus 210 ~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~ 284 (499)
T PRK15049 210 DNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAY 284 (499)
T ss_pred CCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhcc
Confidence 001 112234556666778999999999999999997 99987 789999988888888888765543333332 11
Q ss_pred c---hhhh---cccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHH-HHHH
Q 016317 240 D---DNVL---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVA-RSAY 304 (391)
Q Consensus 240 ~---~~il---~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~ 304 (391)
+ ++.. ..... .+...+..+...+..+.+.--..+...+.+...-+.. .+ +++...+.+. ..++
T Consensus 285 ~~~~sP~~~~~~~~g~-~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i 362 (499)
T PRK15049 285 QAGQSPFVTFFSKLGV-PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVV 362 (499)
T ss_pred CcCCCHHHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHH
Confidence 1 1111 11211 2333455555556555555444444434433332211 01 1222333332 2222
Q ss_pred HHHHHHHHhhccc--chhhhhhhhccccchhHhhhHHHHHHHHhCC
Q 016317 305 VAFTLFVGVTFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 305 ~~~~~~ia~~ip~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 348 (391)
.++..++....|+ ++.+.++. ..+..+.|++|.+.+++.+|+
T Consensus 363 ~~l~~~l~~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 363 YVVGVFLNYLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 2222223333342 44555554 345688999999998888754
No 40
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.53 E-value=1e-05 Score=80.85 Aligned_cols=52 Identities=8% Similarity=-0.050 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhh
Q 016317 173 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 229 (391)
Q Consensus 173 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~ 229 (391)
....+....|+|.|-.......+|+ |||+| +++|++..+..+..++|....+
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 3445555689999999999999997 99987 7889999999888888876444
No 41
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.53 E-value=5.8e-05 Score=75.18 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=100.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhh---hhheeeeeecccc
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQV---GCDIVYMVTGGKC 86 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~---g~~~~y~i~~~~~ 86 (391)
|-..-+...++.+++......-+.|...+.|+.. ..-+.+++++|+|+|+..-.+.-+.+.. ..+.+.....++.
T Consensus 45 Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~ 122 (482)
T TIGR00907 45 GAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQL 122 (482)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433355666777777777778888766666543 6677778888887775443333333322 2222222223333
Q ss_pred HHHHHHHHhcC--CCCCcchhhHHHHHHHHH--HhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccc--cccccc
Q 016317 87 LKKFVEMACSH--CKPLRQTFWILIFGSLHF--FLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRI--ENVSYA 160 (391)
Q Consensus 87 l~~~~~~~~~~--~~~~~~~~~~ii~~~~~~--pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~ 160 (391)
+........+. ..+ +.....++...+.. -+.-.+..|.++.+..+..+..++..+++.+.......+ +..++.
T Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~ 201 (482)
T TIGR00907 123 ILGIVSLTTPGREYIP-TRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFV 201 (482)
T ss_pred HHHHHHhcCCCCCccc-cCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhh
Confidence 33322211111 001 11111222221111 122223344444444443333222111111111111111 000111
Q ss_pred ccC---CC-C-cchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhh
Q 016317 161 YKH---TS-S-ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP 226 (391)
Q Consensus 161 ~~~---~~-~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~ 226 (391)
.++ .. . ......+..++....|+|.|-......-+|+ |||+| +.+|++..+..+..+++..
T Consensus 202 ~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 202 FTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred heeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHH
Confidence 100 00 0 1111245556666789999999999999997 89987 7889999888776654443
No 42
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.50 E-value=8.7e-06 Score=78.42 Aligned_cols=323 Identities=15% Similarity=0.146 Sum_probs=168.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhh----heeeeeecccc
Q 016317 11 MGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC----DIVYMVTGGKC 86 (391)
Q Consensus 11 ~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~----~~~y~i~~~~~ 86 (391)
..++++.-+++++++......-.|..-..|+.. -+|.- .+++||+.+|- . ..+...+.. +..+.+..++.
T Consensus 46 vg~sL~iWv~~gi~s~~galcyaELGT~ipksG-gd~ay-i~~afg~~~aF-~---~~wvs~l~~~p~~~Ai~altF~~Y 119 (479)
T KOG1287|consen 46 VGLSLIIWVFCGIISIIGALCYAELGTSIPKSG-GDYAY-ISEAFGPFPAF-L---FLWVSLLIIVPTSAAIIALTFATY 119 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-cchhh-HHHHhccchhH-H---HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334677778888888888888888665443332 14433 34567875552 1 222222211 12222222222
Q ss_pred -HHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHH---HHHHHHHHhhhhc---ccccccccc
Q 016317 87 -LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS---LSYSTIAWAGSLS---HGRIENVSY 159 (391)
Q Consensus 87 -l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~---~~~~~i~~~~~~~---~~~~~~~~~ 159 (391)
+++.+ +.| +.++..--.+...++..+... |..+.++.+.+-.+.+ ++.+.++...... .+..++.+.
T Consensus 120 ~l~p~f----p~c-~~p~~~~~lla~~~l~~lt~~-n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~ 193 (479)
T KOG1287|consen 120 LLKPFF----PLC-DVPRVASKLLAAALLVLLTLI-NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFEN 193 (479)
T ss_pred hhcccC----CCC-CCchHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccc
Confidence 22222 222 223333333444444444444 4444455444433333 2222222222222 222222221
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccC--C
Q 016317 160 AYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFG--Q 237 (391)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg--~ 237 (391)
+. -....++..++..++-.-.|||.+=..+=.+..|+ |||+| +++++...++.++++.|+++=+..+..-. |
T Consensus 194 ~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e 267 (479)
T KOG1287|consen 194 SE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDE 267 (479)
T ss_pred cc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHH
Confidence 11 11223455678888999999999999998999998 89998 89999999999999999987665443322 2
Q ss_pred CCchhhhcc-cCC---chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCC------CCchhHHHHHHHHHHHH
Q 016317 238 DVDDNVLMA-LKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF------PPGAAVRVVARSAYVAF 307 (391)
Q Consensus 238 ~~~~~il~n-~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 307 (391)
-.+++.... +.+ +++. ...-.+..++.+.+.--.++.....+....+ +.+. .+.+..--...+.....
T Consensus 268 ~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar-eG~LP~~~s~i~~~~~TP~~allf~~~ 345 (479)
T KOG1287|consen 268 ILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR-EGHLPAFFSMISVRRFTPRPALLFSGL 345 (479)
T ss_pred hcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-ccCccHHHHhhcCCCCCChHHHHHHHH
Confidence 222221111 111 1222 2344455555555554434333222222221 1111 00000000011222233
Q ss_pred HHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCCCch
Q 016317 308 TLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP 353 (391)
Q Consensus 308 ~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~ 353 (391)
..++...++|++.+++..+=.......+.+=+++++|.++++..++
T Consensus 346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 3344445668999999998888888888889999999998875543
No 43
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.50 E-value=1.7e-05 Score=79.29 Aligned_cols=204 Identities=11% Similarity=0.103 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhh-hhhhhheeeeeeccccHHHHHHHH
Q 016317 16 MVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 16 i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
+..++.++..........|.....|+.. ..-...++.+||++| ++....... ...+.+..+....++.+. ...
T Consensus 81 ~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~---~~~ 154 (501)
T TIGR00911 81 IMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYILEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYIL---TPV 154 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHHhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 3445666666777777788766565542 445566778998766 444433221 111222222222222211 111
Q ss_pred hcCCCCCcchhhHHHHHHHHHHh--hcCCCCchhhHHHHHHHHHHHHHHHHHHhhh---hcccccccccccccCCC-Ccc
Q 016317 95 CSHCKPLRQTFWILIFGSLHFFL--SQLPDINSVSSVSLAAAVMSLSYSTIAWAGS---LSHGRIENVSYAYKHTS-SAD 168 (391)
Q Consensus 95 ~~~~~~~~~~~~~ii~~~~~~pl--~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~-~~~ 168 (391)
.+.. ........++..+++..+ .-.+..+...+++.+.....+...++..+.. ...+..++.+.+. ..+ ...
T Consensus 155 ~~~~-~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~~~~~ 232 (501)
T TIGR00911 155 FPDC-EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFEGTET 232 (501)
T ss_pred cCCC-CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccCCCCC
Confidence 1111 111111112222222222 2234555555555555444332211111111 1111111111110 011 113
Q ss_pred hHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhh
Q 016317 169 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 232 (391)
Q Consensus 169 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy 232 (391)
+..++..++....|+|.|-.......+|+ |||+| +.+|+...+..++.++|.+....-.
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR-TLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999997 89987 7889999999999999998865443
No 44
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.45 E-value=5e-06 Score=79.47 Aligned_cols=304 Identities=12% Similarity=0.125 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
+.+..++.++........+.+..++.|++ +..|..++.+||..| .+..+....+............+|.++ .
T Consensus 36 ~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 107 (359)
T TIGR00912 36 GWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKILG-RLLSILFILYFFLIAAYLIRIFADFIK----T 107 (359)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 34556677777777788888877777754 789999999998666 455555444444333322222223222 2
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHH-HHHHHhhhhcccccccccccccCCCCcchHHH
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY-STIAWAGSLSHGRIENVSYAYKHTSSADYMFR 172 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (391)
...+.+ + .....+..++..-....+.++....++.+-....+.. ..+.......+...++.. +..+.+..+
T Consensus 108 ~~l~~t--p-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~-----P~~~~g~~~ 179 (359)
T TIGR00912 108 YLLPRT--P-IIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKNLL-----PVLENGLSP 179 (359)
T ss_pred HhcCCC--C-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHcc-----CccccCcHH
Confidence 111111 1 2222222223333334467777777777665544332 112222111111111110 011222334
Q ss_pred HHHHH-HHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCchh-------hh
Q 016317 173 VFNAL-GQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDN-------VL 244 (391)
Q Consensus 173 ~~~~~-~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~~-------il 244 (391)
...+. +...++|.+.........++ +||+ +.+|+...+..++.++|...-......+|.+..++ ..
T Consensus 180 ~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~--~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~ 253 (359)
T TIGR00912 180 ILKGAYPVVTFAFGEIEIFFLLFPLL----SKKK--KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELI 253 (359)
T ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHh----CChh--hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHH
Confidence 44433 36778888777767667665 6665 45699999999999999988777777777542221 11
Q ss_pred cccCCchHHHH---HHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHhhccc-chh
Q 016317 245 MALKRPGWLIA---AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGD 320 (391)
Q Consensus 245 ~n~~~~~~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~ 320 (391)
+..+-++.... +.-..-........-+..+.....++++++.+++ +......+. ....++ ..|| .+.
T Consensus 254 ~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~~~~~~~ 324 (359)
T TIGR00912 254 KLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSIS-FFPDSSNQ 324 (359)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHHH-HccchHHH
Confidence 11111111111 1222344555566666677777778877754421 112222222 222222 3454 322
Q ss_pred hhhhhh---ccccchhHhhhHHHHHHHHhCCC
Q 016317 321 LLGFFG---GFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 321 v~~l~G---a~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
..... ...+....+++|-++.+...-||
T Consensus 325 -~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 325 -LFDYLEFLPIIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221 23334677789998776665333
No 45
>PRK10836 lysine transporter; Provisional
Probab=98.40 E-value=7.4e-05 Score=74.51 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=105.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
.|-...++..++.++.......-+.|...+.|+.. ..-+.+++.+|+.+| +++....++... .+.+.-....+
T Consensus 46 aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~~g~~~g-f~~Gw~~~~~~~-~~~a~~~~a~~--- 118 (489)
T PRK10836 46 AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNYVEEGFG-FALGWNYWYNWA-VTIAVDLVAAQ--- 118 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHcChHHH-HHHHHHHHHHHH-HHHHHHHHHHH---
Confidence 36433577777888888888888888777676544 556677778888766 555554443221 11111000011
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHH---HHHHHHHHHH-HH--HHHhhhhccccc-ccc-ccc
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS---LAAAVMSLSY-ST--IAWAGSLSHGRI-ENV-SYA 160 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s---~~~~~~~~~~-~~--i~~~~~~~~~~~-~~~-~~~ 160 (391)
...+...+ +.+...+..+..+++. ..-....+..+.+. .+.-+..++. .+ +.......++.+ .+. +++
T Consensus 119 ~~~~~~~~---~~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 194 (489)
T PRK10836 119 LVMSWWFP---DTPGWIWSALFLGVIF-LLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWT 194 (489)
T ss_pred HHhhhcCC---CCchHHHHHHHHHHHH-HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCC
Confidence 11111111 1111222222211111 11222333333322 2222211111 11 111111111111 011 111
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhc
Q 016317 161 YKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 233 (391)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~ 233 (391)
..+.+.+..+...........|+|.|-......-+|. |||+| +.+|++..+.....++|......-..
T Consensus 195 ~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~ 262 (489)
T PRK10836 195 IGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK-NIPRAVRQVFWRILLFYVFAILIISL 262 (489)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 1111112234556666666789999999999999997 99987 88999999999999999977554333
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.40 E-value=5.3e-05 Score=74.95 Aligned_cols=317 Identities=15% Similarity=0.181 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCC
Q 016317 19 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 98 (391)
Q Consensus 19 ~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 98 (391)
++.++..........|...+.|+.. .+-+..++.+||++| +.+....++.......+......+.+....+... .
T Consensus 52 li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 126 (466)
T COG0531 52 LIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--L 126 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC--CeeeehhhhcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--h
Confidence 3333444444555556554455443 567888999998777 6667776666666666666555554444433210 0
Q ss_pred CCCcchhhHHHHHH--HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHHHHHH
Q 016317 99 KPLRQTFWILIFGS--LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 176 (391)
Q Consensus 99 ~~~~~~~~~ii~~~--~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (391)
.......+..+..+ ...-+.-.+..+....+........+...++..............+......+.......+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (466)
T COG0531 127 LSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAA 206 (466)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHH
Confidence 00111222222222 2222223345555555555555544332222222212111111000000000122344578888
Q ss_pred HHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCC-Cchh-----hhccc--C
Q 016317 177 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VDDN-----VLMAL--K 248 (391)
Q Consensus 177 ~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~-~~~~-----il~n~--~ 248 (391)
++...++|.|-....+..+|+ |||+| +.+|+...+...+.++|...........+++ .... ..+.. .
T Consensus 207 ~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 281 (466)
T COG0531 207 ILLAFFAFTGFEAIATLAEEV----KNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFG 281 (466)
T ss_pred HHHHHHHhhcHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHc
Confidence 999999999999999999997 88877 5789999999999999998887766666542 2211 11111 1
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh--------cCCCCchhHHHHHHHHHHHHHHHHHhhc----c
Q 016317 249 RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTF----P 316 (391)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ia~~i----p 316 (391)
...+...+..+...+....+.........+.+..+-+.. .|.+.+...+...-...+.. .+.... .
T Consensus 282 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~~~~~ 359 (466)
T COG0531 282 GGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFPLSSI 359 (466)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhhcccc
Confidence 112445555555666666665333333222222222111 01111122222222222222 122221 2
Q ss_pred cchhhhhhhhccccchhHhhhHHHHHHHHhCCC
Q 016317 317 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 349 (391)
Q Consensus 317 ~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 349 (391)
.++.+.++ +.....+.|.++.+..++.++++
T Consensus 360 ~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~ 390 (466)
T COG0531 360 AFNALVSL--ASVAFLIAYLLVALALLVLRRKK 390 (466)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 24444444 33445788999998888887763
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.22 E-value=0.0012 Score=65.62 Aligned_cols=208 Identities=13% Similarity=0.048 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 15 TMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 15 ~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
+...++.++.......-+.|...+.|... ..-..+++.+||++| +++....++.......+........++.+.+..
T Consensus 50 ~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (475)
T TIGR03428 50 FWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRRMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGF 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHHHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555556666666677777665566543 455667888898777 666666555443322222222222222221110
Q ss_pred h--cCCCCC---cc--hhhHHH-HHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccc-cccccccc-CC
Q 016317 95 C--SHCKPL---RQ--TFWILI-FGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRI-ENVSYAYK-HT 164 (391)
Q Consensus 95 ~--~~~~~~---~~--~~~~ii-~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~-~~ 164 (391)
. +...+. .. ..+.+. ..+++.-+.-.+..|..+.+..+..+..+...++++........+ +...++.. ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~ 206 (475)
T TIGR03428 127 QIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTG 206 (475)
T ss_pred hhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCC
Confidence 0 000011 01 111111 111111122234455566665555443332211111111111111 11111110 00
Q ss_pred CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh
Q 016317 165 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 230 (391)
Q Consensus 165 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~ 230 (391)
..+.....+..+.....|+|.|-......-+|+ |||+| +.+|++..+..+..+.|...-+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r-~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 207 ASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KNPRR-VAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred CCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cCcch-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 111113445556667789999999999999997 99987 88999999998887665554443
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.13 E-value=0.00075 Score=67.47 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh
Q 016317 171 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 231 (391)
Q Consensus 171 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g 231 (391)
.++..++....|+|.|-.......+|+ |||+| +.+|++..+.....++|....+..
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888999999999999999997 89987 789999999999999999764433
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.10 E-value=2.4e-05 Score=77.79 Aligned_cols=219 Identities=14% Similarity=0.118 Sum_probs=121.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|....++..++.++....+..-+.|...+.|... .+-+.+++.+||+.| ..+.+..++.............+..++.
T Consensus 27 G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y~~~~~~~~~~~~~~~~~~~~~ 103 (478)
T PF00324_consen 27 GPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAYWLSYIAAIAAEATAAGSFLQF 103 (478)
T ss_pred ccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 5544567777888888888888888776666433 677888899999887 6777775555554444444444444433
Q ss_pred H--HHHHhcCCCCCcchhhHHHHHHHHHHhhc--CCCCchhhHHH-HHHHHHHHHHHHHHHhhhhcccccccc-ccccc-
Q 016317 90 F--VEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDINSVSSVS-LAAAVMSLSYSTIAWAGSLSHGRIENV-SYAYK- 162 (391)
Q Consensus 90 ~--~~~~~~~~~~~~~~~~~ii~~~~~~pl~~--~~~~~~l~~~s-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~- 162 (391)
+ ..+.. ....+.. .+..+..+++.-+.. .|...+....- .+-....+.+.+..+......+.+.+. .++.+
T Consensus 104 ~~~~~~~~-~~~~~~~-~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~ 181 (478)
T PF00324_consen 104 WGYFPGLP-STWVWGI-LIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPG 181 (478)
T ss_pred cccccccc-ccccccc-hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCccccccccc
Confidence 3 11110 0000000 123333222222222 23333322221 111111111111110111111111111 00000
Q ss_pred ----CC------CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhh
Q 016317 163 ----HT------SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 232 (391)
Q Consensus 163 ----~~------~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy 232 (391)
.. +....+.++..++....++|.|-......-.|. |||+| +++|+...+.....++|.......-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~ 256 (478)
T PF00324_consen 182 SFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TIPRATLLSVLRIGVFYVLTSYALT 256 (478)
T ss_pred ccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hhhhHhhhhhhhhhhhhhhhhhhcc
Confidence 01 112347889999999999999999999998987 89998 7899999999999999998777655
Q ss_pred cccCCC
Q 016317 233 WAFGQD 238 (391)
Q Consensus 233 ~~fg~~ 238 (391)
...+.+
T Consensus 257 ~~~~~~ 262 (478)
T PF00324_consen 257 LAVPYD 262 (478)
T ss_pred cccCcc
Confidence 555543
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.03 E-value=0.0019 Score=63.08 Aligned_cols=323 Identities=11% Similarity=0.102 Sum_probs=179.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
+|-.--++..++++.+.+..+.-|.|..-..|... +|.+-+.+.-+|.+| +.+...-+++-.-.+-+-+...+..++
T Consensus 75 aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rfvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~ 151 (541)
T COG0833 75 AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRFVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQ 151 (541)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhhcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 46666677888999999999999999877676433 688888888888777 555555444433333333333333333
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHhh--cCCCCchhhHHHHH-HHHHHHHHHHHHHh--hhhcccccc-ccccccc
Q 016317 89 KFVEMACSHCKPLRQTFWILIFGSLHFFLS--QLPDINSVSSVSLA-AAVMSLSYSTIAWA--GSLSHGRIE-NVSYAYK 162 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~--~~~~~~~l~~~s~~-~~~~~~~~~~i~~~--~~~~~~~~~-~~~~~~~ 162 (391)
-+.++ ..+...|..++.++++-+- -.|...+..+.-.. =++..+.+.++.++ .+...++.+ +.++-.+
T Consensus 152 yW~p~------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~ 225 (541)
T COG0833 152 YWFPD------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHD 225 (541)
T ss_pred hhcCC------CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecC
Confidence 22211 2355778877766554433 45666654443332 22222222222111 111111111 2222222
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhh-h-hcccCCC--
Q 016317 163 HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI-G-YWAFGQD-- 238 (391)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~-g-y~~fg~~-- 238 (391)
+.+....+.++...+-+..|+|.|...+---..|= +||+| .++|++.-.+.=..++|+..-+. | -.-|.|.
T Consensus 226 pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~L 300 (541)
T COG0833 226 PGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRL 300 (541)
T ss_pred CCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCccc
Confidence 22345568899999999999999988877777774 89998 78898888777777787753222 2 2223331
Q ss_pred --------CchhhhcccCCc--hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcC-------CCCchhHHHHHH
Q 016317 239 --------VDDNVLMALKRP--GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-------FPPGAAVRVVAR 301 (391)
Q Consensus 239 --------~~~~il~n~~~~--~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 301 (391)
..++....+++. ..+..+.|.....+++.+----++..-.++..+-.+.+- +++......+.-
T Consensus 301 l~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~v 380 (541)
T COG0833 301 LGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLV 380 (541)
T ss_pred ccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHH
Confidence 112222222221 234445666666666665555566666777666654321 123344444433
Q ss_pred HHHHHHHHHHHhhccc---chhhhhhhhccccchhHhhhHHHHHHHHhC
Q 016317 302 SAYVAFTLFVGVTFPF---FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 347 (391)
Q Consensus 302 ~~~~~~~~~ia~~ip~---~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 347 (391)
+.++.+..+++...+. ++-++++.|-.. .++.+-=++-|++-+|
T Consensus 381 t~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 381 TLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333333333333332 556666666544 5556666677777664
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.92 E-value=0.00051 Score=64.52 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhc
Q 016317 17 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 96 (391)
Q Consensus 17 ~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 96 (391)
..++.+........+..+..++.|++ |..|..++.+||..|+ +..+......+......+...+|.++...-
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~lg~-ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---- 108 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWLGK-IINLLYILYFLLISALVLREFSEFIKTYLL---- 108 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 34444444455555555555556665 8999999999987774 555555555444444444444444433211
Q ss_pred CCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHHHHHH
Q 016317 97 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 176 (391)
Q Consensus 97 ~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (391)
+...........++..-....+.++.+...+.+-....+....+.......+ .|++.-.+....+..+...+
T Consensus 109 ---p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~-----~~~~~l~P~~~~g~~~i~~~ 180 (320)
T PF03845_consen 109 ---PETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPN-----IDWDNLLPVLESGIKPILKG 180 (320)
T ss_pred ---CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCHHHeeCcccCChHHHHHH
Confidence 1111222223333444444567888888765555443332222222222211 12211111224455677777
Q ss_pred HHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCchh----h---hcccCC
Q 016317 177 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDN----V---LMALKR 249 (391)
Q Consensus 177 ~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~~----i---l~n~~~ 249 (391)
.-...+.|.+-..+.-+...+ +||++. +|....+..++.++|...-+.....||.+..++ . .+..+-
T Consensus 181 ~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i 254 (320)
T PF03845_consen 181 SLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEI 254 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHH
Confidence 777777787776666677765 666654 488888888888888877777777777542221 1 111111
Q ss_pred chHH---HHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhh
Q 016317 250 PGWL---IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 287 (391)
Q Consensus 250 ~~~~---~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 287 (391)
++.. -.+.-............+..+...+.+.+.++.+
T Consensus 255 ~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 255 GDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111 1122233455555666667777788888887544
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.88 E-value=0.001 Score=60.82 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 14 GTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 14 g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
|..-.++++.+-..+.....+..++.+.. +|+|+-++.+||+++| +.|..+.+..++.++.-+...++.+++.++-
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~f~a~---~y~~~~~~v~~~~~~k-i~d~~iif~lf~~~vVM~AGags~~~e~~~l 113 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKKFNAT---SYREILKYVSGPKFAK-IIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL 113 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHhccchhHHHHHhCc
Confidence 55566677777777777777766655443 9999999999999885 7799999999999988887777666654322
Q ss_pred HhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHH
Q 016317 94 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 131 (391)
Q Consensus 94 ~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~ 131 (391)
+.+.-+++....+.-+.++++.+.+-.+..
T Consensus 114 --------P~wiGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 114 --------PYWIGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred --------cHHHHHHHHHHHHHHHHHHhcccceeeehe
Confidence 223333555555555667777777555543
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.81 E-value=0.0023 Score=62.95 Aligned_cols=233 Identities=14% Similarity=0.093 Sum_probs=125.4
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCc------chhhHHHHHHHHHHhh
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR------QTFWILIFGSLHFFLS 118 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~------~~~~~ii~~~~~~pl~ 118 (391)
.++.-+.|..||.+ |..+..+...+...|....-....++.++.+++...+.....+ .....++...+.+++.
T Consensus 76 l~~~v~sR~~FG~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 37788999999985 7788888889999999998889999888888777543211111 1223344455666655
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHH-hhhhcccccccccccccCCCCcchHHHHHHHHHHHHHHh-cccceehhhhcc
Q 016317 119 QLPDINSVSSVSLAAAVMSLSYSTIAW-AGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAF-AGHAVALEIQAT 196 (391)
Q Consensus 119 ~~~~~~~l~~~s~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~ 196 (391)
...-.+..+.....+....+....+.. ......+..+..+ .....+.+.....+...++..+-.+ ..-.+.+++.+.
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy 233 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGE-LTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF 233 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh
Confidence 555555555555555543222211111 1111111111111 1110122333455666666543332 445567888887
Q ss_pred CCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcc----cCCCCch--hhhcccCCchHHHH-----HHHHHHHHHH
Q 016317 197 IPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA----FGQDVDD--NVLMALKRPGWLIA-----AANLMVVVHV 265 (391)
Q Consensus 197 m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~----fg~~~~~--~il~n~~~~~~~~~-----~~~~~~~i~~ 265 (391)
+ |++++.. +....++.........+|+.+-.. +|+...+ ++...+........ ..+++..+..
T Consensus 234 ~----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~ 307 (442)
T TIGR00800 234 G----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQ 307 (442)
T ss_pred c----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHH
Confidence 6 4444433 556677777777777777776655 7765332 33333332211111 1112222222
Q ss_pred H-HhhhcccccHHHHHHHHHh
Q 016317 266 I-GSYQVFAMPVFHLLEGMMI 285 (391)
Q Consensus 266 ~-~s~pl~~~p~~~~~~~~~~ 285 (391)
+ ..--...++..-.+.+...
T Consensus 308 ~~t~~~~N~ys~~l~l~~l~~ 328 (442)
T TIGR00800 308 LSTNISANSYSAGLDIAALLP 328 (442)
T ss_pred HHHHHHhhccchHHHHHHhCc
Confidence 2 3455566777777777764
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=97.73 E-value=8.4e-05 Score=62.74 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=115.1
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHhCcc------------cCC--C----------------------c--
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTMWQMINLHE------------CVP--G----------------------V-- 42 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~------------~~~--~----------------------~-- 42 (391)
||-||.. .||.+++.++.+.+++++.+....+|+.. +.+ + +
T Consensus 33 lpkafat-agwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~dvli~d~yeraekrp 111 (319)
T KOG3832|consen 33 LPKAFAT-AGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDDVLIADGYERAEKRP 111 (319)
T ss_pred chHhHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCcEEEecCchhcccCC
Confidence 6889555 59999999999999999999888877410 000 0 0
Q ss_pred ----------------ccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHh--c-------C
Q 016317 43 ----------------RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC--S-------H 97 (391)
Q Consensus 43 ----------------~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~-------~ 97 (391)
++.+.++++...|.| .|-.+..+++++++||....|..-.....-++..... + +
T Consensus 112 ilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~ 190 (319)
T KOG3832|consen 112 ILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADP 190 (319)
T ss_pred cceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCc
Confidence 012567888888875 7888889999999999999998877766655543322 1 1
Q ss_pred CC-C----C----c----chhhHHHHH-HHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Q 016317 98 CK-P----L----R----QTFWILIFG-SLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKH 163 (391)
Q Consensus 98 ~~-~----~----~----~~~~~ii~~-~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 163 (391)
|. + | + .+++.+++. ++.+|+.+. +++..+.+.++...+-.............+. ++ +-. .+
T Consensus 191 ~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~tmqa-ee--daa-~a 265 (319)
T KOG3832|consen 191 CHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLATMQA-EE--DAA-AA 265 (319)
T ss_pred ccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhhhhhh-cc--ccc-cc
Confidence 10 1 1 1 234444444 355577765 4444455554444432211111111111111 11 111 12
Q ss_pred CCCcchHHHHHHHHHHHHHHhcccceehhhhccC
Q 016317 164 TSSADYMFRVFNALGQISFAFAGHAVALEIQATI 197 (391)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 197 (391)
+|+...+-++-..++...|+|.+|.+.|.....+
T Consensus 266 ~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 266 HPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred CCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 3444445555666889999999999999999876
No 55
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00075 Score=67.46 Aligned_cols=330 Identities=12% Similarity=0.049 Sum_probs=171.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhCcccCCCc-ccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeecc
Q 016317 6 WDGIYMGPGTMVLVISWVTTLNTMWQMINLHECVPGV-RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGG 84 (391)
Q Consensus 6 ~~~~G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~-~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~ 84 (391)
++. |=..-++..++.+...+.++.-+.|..-+.|.. . ++-.-+....|+-+| +++....++...-.+-+-....+
T Consensus 59 ~~~-gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s 134 (554)
T KOG1286|consen 59 RNG-GPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAYRFVGESLA-FAIGWNYLLEYVIGLAAEARAWS 134 (554)
T ss_pred hcc-CChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeeeeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHH
Confidence 443 333345566677788888899999977767752 2 344445556676666 55555555554444444444444
Q ss_pred ccHHHHHH-H-HhcCCCCCcchhhHHH--HHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc-cc
Q 016317 85 KCLKKFVE-M-ACSHCKPLRQTFWILI--FGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENV-SY 159 (391)
Q Consensus 85 ~~l~~~~~-~-~~~~~~~~~~~~~~ii--~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 159 (391)
..++.+.. . .....+..+...|..+ ..++++-+.-.+-.-+.+..+.+..+.+.+-.++........+.+.+. +|
T Consensus 135 ~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ 214 (554)
T KOG1286|consen 135 SYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNW 214 (554)
T ss_pred HHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCC
Confidence 44444330 0 0000012222223322 233444444455544445444444443332111111111111111111 11
Q ss_pred c----ccC-CCC-cchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhc
Q 016317 160 A----YKH-TSS-ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 233 (391)
Q Consensus 160 ~----~~~-~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~ 233 (391)
. +++ ... +..+.++.+++-++.|+|.|-..+-.--.|- |||+| +.++++..++..+.++|....+.--+
T Consensus 215 ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l 289 (554)
T KOG1286|consen 215 IGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA----KNPRK-AIPKAIKQSLLRILLFYILSSIVLGL 289 (554)
T ss_pred cCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCcc-cccHHHHHHHHHHHHHHHHHHHHheE
Confidence 1 111 111 2237889999999999999988888888885 99997 88999999999999999987765332
Q ss_pred ccC-CC--Cchhhhcc------cCCchHHHH---HHHHHHHHHHHHhhhcccccHHHHHHHHHhhhcC-----CCCchhH
Q 016317 234 AFG-QD--VDDNVLMA------LKRPGWLIA---AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-----FPPGAAV 296 (391)
Q Consensus 234 ~fg-~~--~~~~il~n------~~~~~~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-----~~~~~~~ 296 (391)
.-. ++ ..++.... ..+ .+.+. +.+....+.++.+---.+++.-..+-.+.+...- ..+++.+
T Consensus 290 ~vpy~~~~L~~~~~~~spF~iai~~-~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~ 368 (554)
T KOG1286|consen 290 LVPYNDPRLDPGAALASPFVIAIGN-AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGV 368 (554)
T ss_pred EeccCccccCCCCccccHHHHHHhc-cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCC
Confidence 222 12 22222111 111 22333 7777777777777777777777777766432210 0112212
Q ss_pred HHHHHHHHHHHHHHHHhhccc-----chhhhhhhhccccchhHhhhHHHHHHHHhC
Q 016317 297 RVVARSAYVAFTLFVGVTFPF-----FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 347 (391)
Q Consensus 297 ~~~~~~~~~~~~~~ia~~ip~-----~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 347 (391)
-+.......++..+++..... ++.++++.|--+ .+++.+=++.|++.++
T Consensus 369 P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 369 PLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFRY 422 (554)
T ss_pred chhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeeee
Confidence 222223333344444444332 577787776544 5555555555555553
No 56
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.44 E-value=0.06 Score=51.94 Aligned_cols=218 Identities=14% Similarity=0.116 Sum_probs=116.8
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.++.-+.|..||++ |..+..+...+...|....-....++.++.+.+...+. .+...+.++..++..+.+.. ..+
T Consensus 58 l~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~-G~~ 132 (386)
T TIGR02358 58 LSAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---ESPMLWILIVGILVTLWLLS-GPL 132 (386)
T ss_pred cCHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHH-HHH
Confidence 47899999999985 87888888888888888888888889898887764321 11233444444445544443 556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcchHHHHHHHHHHHHHH-hcccceehhhhccCCCCCCC
Q 016317 125 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFA-FAGHAVALEIQATIPSTPEK 203 (391)
Q Consensus 125 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~~~~ 203 (391)
.++++..++..+.........+....+...++ ..+. +...+ +...++...-. -..-...+++.+.. |+
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~---~~~~s---~~~~~~~~~~~~~swa~~~~DysRy~----k~ 201 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKADLSE-LWNR---AGDMS---FAVAVELVIAMPLSWLPLIADYTRFA----RN 201 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hcCC---CCCcc---HHHHHHHHHHHHHHHHHHccchhhhc----CC
Confidence 66666666665443322222221222211111 1111 11111 22222221110 11222356766653 44
Q ss_pred CccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Q 016317 204 PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 283 (391)
Q Consensus 204 p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 283 (391)
|++ .......+..+...+-..+|.....+.++....+++... +.. ...-+...++...+-....++..-.+.+.
T Consensus 202 ~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 202 PRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---GLG-IPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred Ccc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 443 335666777788888888888766666653222233222 111 12334445555555556666666666666
Q ss_pred H
Q 016317 284 M 284 (391)
Q Consensus 284 ~ 284 (391)
.
T Consensus 276 ~ 276 (386)
T TIGR02358 276 L 276 (386)
T ss_pred H
Confidence 6
No 57
>PRK11375 allantoin permease; Provisional
Probab=97.22 E-value=0.055 Score=53.79 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=115.3
Q ss_pred ccHHHHHHHhhCCCccCceehhhhh-hhhhhhheeeeeeccccHHHHHHHHhcCC---------CCCc--chhhHHHHHH
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQL-IVQVGCDIVYMVTGGKCLKKFVEMACSHC---------KPLR--QTFWILIFGS 112 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~---------~~~~--~~~~~ii~~~ 112 (391)
.++.-+.|..||.+ |..+..+... +...|....-....++.++.++....+.. .+.+ .....+++.+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 48899999999985 7566666663 46677766677777777777665542110 1111 1222234455
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcc-cccccccccccC-CCCcchHHHHHHHHHHHHHHhc-ccce
Q 016317 113 LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSH-GRIENVSYAYKH-TSSADYMFRVFNALGQISFAFA-GHAV 189 (391)
Q Consensus 113 ~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~-~~~~ 189 (391)
+..+..+ ...+.++++..++............+....+ +..+..+..+.+ .........+..++...+=++. .-.+
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 6666654 4556666666655554332211111111111 211111111110 1111123444444444444454 3447
Q ss_pred ehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh----hcccCCCCch--hhhcccCCchHHHHHHHHHHHH
Q 016317 190 ALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDVDD--NVLMALKRPGWLIAAANLMVVV 263 (391)
Q Consensus 190 ~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g----y~~fg~~~~~--~il~n~~~~~~~~~~~~~~~~i 263 (391)
.|++.+.. |++++.. +...+++.+...+...+|+.. ...+|+...+ +++.+..+ ......+.+...+
T Consensus 247 ~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~ 319 (484)
T PRK11375 247 ASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILM 319 (484)
T ss_pred ccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 78888865 5555322 444455555555554444432 3456654332 33433322 2233334444555
Q ss_pred HHHHh-hhcccccHHHHHHHHHhh
Q 016317 264 HVIGS-YQVFAMPVFHLLEGMMIK 286 (391)
Q Consensus 264 ~~~~s-~pl~~~p~~~~~~~~~~~ 286 (391)
+...+ .....++.-..+.+.+.+
T Consensus 320 a~~~tN~~~N~ys~~~~l~~l~pk 343 (484)
T PRK11375 320 TTISTNATGNIIPAGYQIAALAPT 343 (484)
T ss_pred HHHHHHHHhhcccHHHHHHHhCcC
Confidence 55555 345777877777777754
No 58
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.20 E-value=0.14 Score=50.27 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH---hcC
Q 016317 21 SWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA---CSH 97 (391)
Q Consensus 21 ~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~---~~~ 97 (391)
.+.+......=|.|.....|... ..--.+...-+||+++.+.-+.-+.+..|............-+-+.... +++
T Consensus 92 a~~~~i~va~slaEl~Sa~PtsG--gLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~ 169 (550)
T KOG1289|consen 92 AGFFSICVALSLAELCSAMPTSG--GLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPN 169 (550)
T ss_pred HHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCC
Confidence 33444444555666444455321 2222233333788886554444444444333322222222211122221 122
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHHHHHHHH---HHhhhhccc--cccccc-ccc-cCCCCcc
Q 016317 98 CKPLRQTFWILIFGSLHFFLSQLP--DINSVSSVSLAAAVMSLSYSTI---AWAGSLSHG--RIENVS-YAY-KHTSSAD 168 (391)
Q Consensus 98 ~~~~~~~~~~ii~~~~~~pl~~~~--~~~~l~~~s~~~~~~~~~~~~i---~~~~~~~~~--~~~~~~-~~~-~~~~~~~ 168 (391)
.+. ++.....+..++.+-.+++. ..+.+++++.+++...++..++ .+..+..+. .+++.. +.. ++.+++.
T Consensus 170 y~~-~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~ 248 (550)
T KOG1289|consen 170 YEP-TNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWK 248 (550)
T ss_pred Ccc-cceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCC
Confidence 222 22333344444444444433 3356777777777665433222 221111111 111110 111 1112222
Q ss_pred -hHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCchh
Q 016317 169 -YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDN 242 (391)
Q Consensus 169 -~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~~ 242 (391)
.-+.+..++-.-.+.+.|-...+.+..|- ||+++ +.+|++..+..++.++=..+-+.-...-+||.+..
T Consensus 249 ~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v 318 (550)
T KOG1289|consen 249 NNGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAV 318 (550)
T ss_pred cchHHHHHhhccceeEEeccCchHHHHHHh----cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 44566666666667777777788888886 88887 67788888888877776666565566666554443
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.068 Score=51.79 Aligned_cols=260 Identities=17% Similarity=0.143 Sum_probs=136.4
Q ss_pred HHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhh
Q 016317 48 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVS 127 (391)
Q Consensus 48 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~ 127 (391)
-.++|+-||.+ |.++..+.+.+.+.|....-.+..++-... .+..+...+.++..++..-.+.. -.+.+.
T Consensus 84 mi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~~l~~if-G~r~l~ 153 (442)
T COG1457 84 MILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLMTLVTIF-GYRALH 153 (442)
T ss_pred heeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 45678889984 889999999999999988888877776111 12334455556666555555544 344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-ccccccccccccCCCCcchHHHHHHHHHHHHHHhc-ccceehhhhccCCCCCCCCc
Q 016317 128 SVSLAAAVMSLSYSTIAWAGSLS-HGRIENVSYAYKHTSSADYMFRVFNALGQISFAFA-GHAVALEIQATIPSTPEKPS 205 (391)
Q Consensus 128 ~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~p~ 205 (391)
.++-.+....+............ ++ ..+... ...+.+..++..+++...-.+. .-.-..+..+-+ ++|+
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~---~~~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~t 224 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKG---GLDALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSPT 224 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---ccceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCCc
Confidence 44444444332221111111111 11 112111 1224445556555555444332 223344555544 3333
Q ss_pred cccchhhhhHHHHHHHHHhhhhhhhhhcccCCCC-chhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Q 016317 206 KILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 284 (391)
Q Consensus 206 ~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~-~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 284 (391)
.++.-.....+......+-.+.|.....+-|++. ..++...+.+ ....+.+...+....+=-...++..-.+.+..
T Consensus 225 ~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~ 301 (442)
T COG1457 225 PSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANII 301 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Confidence 1122234445666667777777888777777665 2333333321 33355566667777766667777766666665
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHh----hcccchhhhhhhhccccchhHhh
Q 016317 285 IKRMNFPPGAAVRVVARSAYVAFTLFVGV----TFPFFGDLLGFFGGFGFTPTSYF 336 (391)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~----~ip~~~~v~~l~Ga~~~~~l~~i 336 (391)
.+- ++..+.....+. ...++|+ +..+++.++.++|+.........
T Consensus 302 ~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 302 PKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred hhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 223333333222 3333333 34567888877776664433333
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.63 E-value=0.86 Score=45.44 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|..|.-++-||+|..+....+......++...+-+...+..++.++ +.+.....++..++.+-.+...-+
T Consensus 107 ~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 107 AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccH
Confidence 359999999999976544555544444444444444444444544432 233344445566666777788888
Q ss_pred chhhHHHHHHHHH
Q 016317 124 NSVSSVSLAAAVM 136 (391)
Q Consensus 124 ~~l~~~s~~~~~~ 136 (391)
+...+...+=.+.
T Consensus 179 ~av~~TD~iQ~~i 191 (483)
T PRK09442 179 RAVVLTDALQGIV 191 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776655443
No 61
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.72 Score=44.66 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHHhCC
Q 016317 292 PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 348 (391)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 348 (391)
+.+.+|...|....+++..+.+...+.+.++.+.+.+.+..+-+..+.+..+..+|+
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 356677888877777766666665588999999998888888888888777766665
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.22 E-value=0.88 Score=44.22 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=55.1
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|..|.-+.-||+|..|.+..+...+.........+...+..++.++ +.+...-.++..++..-.+..--+
T Consensus 65 ~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------gi~~~~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 65 AYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------GLDLYLSLLLLGAITILYTVFGGL 136 (407)
T ss_pred CCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CchHHHHHHHHHHHHHHHHHHcch
Confidence 459999999999986666666666666666666666666666665543 233344445555666666777777
Q ss_pred chhhHHHHHHHHH
Q 016317 124 NSVSSVSLAAAVM 136 (391)
Q Consensus 124 ~~l~~~s~~~~~~ 136 (391)
+...+...+=.+.
T Consensus 137 ~av~~Td~iQ~~i 149 (407)
T TIGR00813 137 KAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655443
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.12 E-value=1.7 Score=43.24 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=53.9
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|.+|.-++-||+|.-+++..+...+..++...+-+...+..++.++ +.+.....++..++.+-.+...-+
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------GLSYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhH
Confidence 359999999999976555666766666666555544444444444432 334444555566667777777788
Q ss_pred chhhHHHHHHHH
Q 016317 124 NSVSSVSLAAAV 135 (391)
Q Consensus 124 ~~l~~~s~~~~~ 135 (391)
+...+...+=..
T Consensus 178 ~av~~td~iQ~~ 189 (471)
T TIGR02119 178 RAVALTDAIQGI 189 (471)
T ss_pred HHHHHHHHHHHH
Confidence 887777665544
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=95.88 E-value=2.2 Score=42.66 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|.+|.-++-||+|+.|.+..+...+.....+.+-+...++.++..++ .+...-.++...++...+..--+
T Consensus 104 ~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 104 ATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGL 175 (493)
T ss_pred CccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcCh
Confidence 4699999999999657888888888888888877777777777655433 12233334455666666777677
Q ss_pred chhhHHHHH
Q 016317 124 NSVSSVSLA 132 (391)
Q Consensus 124 ~~l~~~s~~ 132 (391)
++..+...+
T Consensus 176 ~av~~Td~i 184 (493)
T COG0591 176 RAVVWTDFI 184 (493)
T ss_pred hHHHHHHHH
Confidence 776666654
No 65
>PRK12488 acetate permease; Provisional
Probab=95.69 E-value=2.8 Score=42.52 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=51.0
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.|..|.-++-||+|..|.+..+...+........-+...+..++.++ +.+...-.++..++.+-.+..--++
T Consensus 130 ~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T PRK12488 130 YTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGML 201 (549)
T ss_pred cchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccchh
Confidence 59999999999865566666666555544444444444444444332 2333444455666666677777777
Q ss_pred hhhHHHHHHHHH
Q 016317 125 SVSSVSLAAAVM 136 (391)
Q Consensus 125 ~l~~~s~~~~~~ 136 (391)
...+...+=.+.
T Consensus 202 av~~td~iQ~~i 213 (549)
T PRK12488 202 ATTWVQIIKAVL 213 (549)
T ss_pred HHHHHHHHHHHH
Confidence 777777665443
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.51 E-value=3.3 Score=42.05 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=47.2
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.|..|.-++-||+|.-|.+..+...+.........+...+..++.++ +.+...-.++..++..-.+..--++
T Consensus 130 ~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------gi~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T TIGR02711 130 YTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------GLNYHVAVVLVGILMVMYVLFGGML 201 (549)
T ss_pred ccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhhH
Confidence 59999999999866556665555544444333333343444443332 2333344455556666666777777
Q ss_pred hhhHHHHHHHH
Q 016317 125 SVSSVSLAAAV 135 (391)
Q Consensus 125 ~l~~~s~~~~~ 135 (391)
...+...+=.+
T Consensus 202 av~~td~iQ~~ 212 (549)
T TIGR02711 202 ATTWVQIIKAV 212 (549)
T ss_pred HHHHHHHHHHH
Confidence 76666665433
No 67
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.15 E-value=2 Score=41.72 Aligned_cols=290 Identities=15% Similarity=0.059 Sum_probs=142.0
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
.+|..|....-++.+--|++..+...+..+-..++.+...+..++.+++ .+...-.++..+++.-...+.-+
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v~~~vgv~ig~ilm~~Yvv~GGM 174 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------VPYHVGVVIGGILMMVYVVLGGM 174 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------CCceeehhhHhHHHHHHHHhcch
Confidence 3599999999998766666666655555554555555555555544433 22233444556666667788888
Q ss_pred chhhHHHHHHHHHHH-HHHHHHHhhhhccccccc--------cccc--ccC-CCCcchHHHHHHHHHHHHHHhcccceeh
Q 016317 124 NSVSSVSLAAAVMSL-SYSTIAWAGSLSHGRIEN--------VSYA--YKH-TSSADYMFRVFNALGQISFAFAGHAVAL 191 (391)
Q Consensus 124 ~~l~~~s~~~~~~~~-~~~~i~~~~~~~~~~~~~--------~~~~--~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~ 191 (391)
+..+|+..+=-+..+ .+.+..+......+..+. .+.. ... .++.....+-.+.++...--..+....|
T Consensus 175 ~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLP 254 (529)
T COG4147 175 KATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLP 254 (529)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCC
Confidence 888888887444322 222222222211111110 0000 000 0111111222333333333334444455
Q ss_pred hhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcc---------cC-----------CCCchhhhcc-----
Q 016317 192 EIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA---------FG-----------QDVDDNVLMA----- 246 (391)
Q Consensus 192 ~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~---------fg-----------~~~~~~il~n----- 246 (391)
.+.-.. -.-|+.+.-|+++.++.....++|+..-+.|+.+ ++ |...+-+..+
T Consensus 255 Hil~RF---fTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~ 331 (529)
T COG4147 255 HILMRF---FTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAA 331 (529)
T ss_pred eEEEEE---EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHH
Confidence 554433 1335555556999999999999999865555422 21 3222222222
Q ss_pred ------cCCchHHHH---HHHHHHHHHHHHhhhccccc--HHHHHHHHHhhhcCCCCchhHHHHHHHHH---HHHHHHHH
Q 016317 247 ------LKRPGWLIA---AANLMVVVHVIGSYQVFAMP--VFHLLEGMMIKRMNFPPGAAVRVVARSAY---VAFTLFVG 312 (391)
Q Consensus 247 ------~~~~~~~~~---~~~~~~~i~~~~s~pl~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ia 312 (391)
+.+++|..- ...+...++......+.... ..|.-.+.++++. .++.+-.+.|+.. .+....++
T Consensus 332 vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~a---se~~~v~vaRi~~v~~~vva~~lg 408 (529)
T COG4147 332 VLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGA---TEKKEVRVARIAVVILGVVAILLG 408 (529)
T ss_pred HhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCC---CccceehhHHHHHHHHHHHHHHhe
Confidence 111122111 22223333333333332221 1233444443331 1222223333333 33455666
Q ss_pred hhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCC
Q 016317 313 VTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 350 (391)
Q Consensus 313 ~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 350 (391)
+.-|+ ++.-++|--++..-+.-+|.+.+ -++|||.
T Consensus 409 i~~~g--nVaflVa~AF~lAaSa~fPvivl-glfWKr~ 443 (529)
T COG4147 409 ILPPG--NVAFLVALAFALAASANFPVIVL-GLFWKRL 443 (529)
T ss_pred ecCCc--cHHHHHHHHHHHHHHcccchhhH-HHHHhhc
Confidence 66675 66667776677777888899774 6666654
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=95.05 E-value=2.4 Score=41.25 Aligned_cols=172 Identities=17% Similarity=0.131 Sum_probs=80.3
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.++.-+.|..||.+ |..+..+...+...|....-....++.+++.. +.+...+.++..++..+.+... .+
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~--------~~~~~~~~~i~~~l~~~~~~~G-~~ 140 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT--------GLDINLLIVLSGLLMTVTAYFG-IS 140 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHH-HH
Confidence 48899999999985 76777777667766655554444444333321 1222334555555555555442 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcccc-cccccccccCCCCcchHHHHHHHHHHHHHHh-cccceehhhhccCCCCCC
Q 016317 125 SVSSVSLAAAVMSLSYSTIAWAGSLSHGR-IENVSYAYKHTSSADYMFRVFNALGQISFAF-AGHAVALEIQATIPSTPE 202 (391)
Q Consensus 125 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~ 202 (391)
.++++...+........+...+....+.. ..+. .+.+ .... ..+..++...+-.+ ..-.+.+++-+.. |
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~---~~~~~a~~~~~g~~~~~~~~~~DysRy~----k 211 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGL-KAIV-PAEP---LDFSAALTLVVGSFISGGTLTADFVRFG----R 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh-hcCC-CCCc---ccHHHHHHHHHHHHHHhHhcCCChHhhc----c
Confidence 44444444433222211111111111110 1111 1110 0111 23333444333322 3345677777764 4
Q ss_pred CCccccchhhhhHHHHHHHHHhhhhhhhhhcccCC
Q 016317 203 KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 237 (391)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~ 237 (391)
++++ .......+..+...+...+|...-...|+
T Consensus 212 ~~~~--~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 212 SAKI--AVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred Cccc--eeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3332 11334455555556666666655555554
No 69
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.38 E-value=1.9 Score=41.11 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=44.8
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhc--CCCC
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDI 123 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~--~~~~ 123 (391)
+..|..++-+||+++ +...+...+.+.....+-+...+.-++-+ .+.+...+.++..+..+-+.+ .++.
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll--------~g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLL--------FGIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 778888888888665 44444444444444333333222222221 134456666666554444444 6777
Q ss_pred chhhHHHHHHHHHH
Q 016317 124 NSVSSVSLAAAVMS 137 (391)
Q Consensus 124 ~~l~~~s~~~~~~~ 137 (391)
+.+..+...-....
T Consensus 114 ~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 114 RRLERILKVLVAVM 127 (358)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777666544433
No 70
>PRK10484 putative transporter; Provisional
Probab=94.10 E-value=7.3 Score=39.28 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=15.9
Q ss_pred cccHHHHHHHhhCCCccCceehh
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLP 66 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~ 66 (391)
..|..|.-++-||+| .+.+...
T Consensus 100 ~~T~~e~l~~Ryg~~-~~~~~~~ 121 (523)
T PRK10484 100 ITTIPDFLEERYDKT-TRRIVSI 121 (523)
T ss_pred CccHHHHHHHhcCch-hHHHHHH
Confidence 459999999999986 4444343
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.76 E-value=7.8 Score=38.84 Aligned_cols=83 Identities=11% Similarity=-0.043 Sum_probs=43.6
Q ss_pred cccHHHHHHHhhCCCccCcee---hhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIV---LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 120 (391)
..|..|.-++-||++ .|.+. .+.........+.+-+...+..++.+ . +.+.....++..++.+-.+..
T Consensus 107 ~~T~~e~l~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~----~----gi~~~~~iii~~~iv~iYt~~ 177 (502)
T PRK15419 107 ALTLPDYFTGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFEST----F----GMSYETALWAGAAATILYTFI 177 (502)
T ss_pred ceeHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h----CCCHHHHHHHHHHHHHHHHHh
Confidence 358999999999974 44332 22222222222222222223333322 1 334444555666777777777
Q ss_pred CCCchhhHHHHHHHH
Q 016317 121 PDINSVSSVSLAAAV 135 (391)
Q Consensus 121 ~~~~~l~~~s~~~~~ 135 (391)
--++...+.-.+=.+
T Consensus 178 GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 178 GGFLAVSWTDTVQAS 192 (502)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777776665444
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=93.74 E-value=0.046 Score=53.75 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=39.2
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
+..-+.|..||. .|..+..+...+.+.|....-....++.+..+.+..
T Consensus 72 ~~~v~sR~~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 72 PTMVLSRASFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp -HHHHTTTTS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CchhcchhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999997 588888888888899988888888888888887764
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=93.38 E-value=8.8 Score=37.82 Aligned_cols=292 Identities=14% Similarity=0.063 Sum_probs=134.1
Q ss_pred cccHHHHHHHhhCCCccC---ceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcC----C--C-CCcchhhHHHHHH-
Q 016317 44 FDRYIDLGRHAFGPKLGP---WIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSH----C--K-PLRQTFWILIFGS- 112 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~---~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~--~-~~~~~~~~ii~~~- 112 (391)
..+|+.+.|..||-. |- .+......+.-||. ..-..+..++.++....+. . . .........+...
T Consensus 102 gIpFpv~~RaSFGi~-Ga~~p~l~R~i~A~~WyGv---qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 102 GIPFPVLSRASFGIY-GANFPALIRAIVAIVWYGV---QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred CCCchHHHHHHHhhh-hhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 459999999999863 32 33334444444443 2223333444444333221 1 0 0111122222222
Q ss_pred --HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhc--ccccccccccccCCCCcchHHHHHHHHHHHHHHh-ccc
Q 016317 113 --LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLS--HGRIENVSYAYKHTSSADYMFRVFNALGQISFAF-AGH 187 (391)
Q Consensus 113 --~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~ 187 (391)
.+--+...+..+++++.-..+..+....+.-.+..... .+.....+......+.+...+.+........-.| ...
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 22233455677777777776666544333222222222 2211111111111223333444444443333333 345
Q ss_pred ceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhh----hhhhhhcccCCCCc--hhhhcccCCchHHHHHHHHHH
Q 016317 188 AVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP----VALIGYWAFGQDVD--DNVLMALKRPGWLIAAANLMV 261 (391)
Q Consensus 188 ~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~----~g~~gy~~fg~~~~--~~il~n~~~~~~~~~~~~~~~ 261 (391)
-|+|+.-+.- |+|++-. ..-.++.-+...+... .+-..+..||+... .+++.++.+..+..-++.+.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~ 331 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF 331 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence 6778888764 4544422 2222444444444444 44467899999855 488888876544431333333
Q ss_pred -HHHHHHhhhcccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHH
Q 016317 262 -VVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSI 340 (391)
Q Consensus 262 -~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l 340 (391)
.-++.....-+..+...-+.+.+.+.-+. ++-......+.+.+++.-+=..-..+..+++..|++.++...-++=-
T Consensus 332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~in~--krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD- 408 (497)
T COG1953 332 AVATISTNIAANIVSPGYDLSALFPKYINI--KRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD- 408 (497)
T ss_pred HHHHHhhhHHhccCChHHHHHHhcccccch--hhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33333344444455544455555433221 22222222333333333333333347777777777777666555433
Q ss_pred HHHHHhCCC
Q 016317 341 MWLVIKKPK 349 (391)
Q Consensus 341 ~~l~~~~~~ 349 (391)
|+..+|+|
T Consensus 409 -yflirk~~ 416 (497)
T COG1953 409 -YFLVRKGR 416 (497)
T ss_pred -HHhhhcCc
Confidence 33444443
No 74
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=92.98 E-value=1.6 Score=42.29 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=40.3
Q ss_pred cccHHHHHHHhhCCCc-cCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCC
Q 016317 44 FDRYIDLGRHAFGPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 122 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 122 (391)
..|..|.-++-||+|. .+.+..+.............+...+..++.+ .+.+.....++..++.+-.+..--
T Consensus 68 ~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~--------~gi~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 68 AVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVL--------FGIPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp --SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--------TT--HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhc--------cchhhhHHHHHHHHHHHHhhhhhh
Confidence 3599999999999863 2444333333333333334444334433333 134445555566666666777777
Q ss_pred CchhhHHHHHHHH
Q 016317 123 INSVSSVSLAAAV 135 (391)
Q Consensus 123 ~~~l~~~s~~~~~ 135 (391)
++...+...+=.+
T Consensus 140 l~av~~td~iQ~~ 152 (406)
T PF00474_consen 140 LRAVAWTDFIQGV 152 (406)
T ss_dssp -----SHHHHHHH
T ss_pred HhhhhHHHHHHHH
Confidence 7766665554443
No 75
>PRK09395 actP acetate permease; Provisional
Probab=92.23 E-value=15 Score=37.42 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=46.7
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|+.|.-+.-||+|.-|.+..+...+.......+-+...+..++.+ . +.+...-.++..++.+-.+..--+
T Consensus 131 ~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~----~----gi~~~~~ili~~~i~~iYt~~GGm 202 (551)
T PRK09395 131 KYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL----F----GLNYHVAVVLVGVLMMVYVLFGGM 202 (551)
T ss_pred CccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h----CCCHHHHHHHHHHHHHHHHhhcch
Confidence 36999999999996545555555444433333333333333333332 1 334444555666666667777777
Q ss_pred chhhHHHHHHH
Q 016317 124 NSVSSVSLAAA 134 (391)
Q Consensus 124 ~~l~~~s~~~~ 134 (391)
+...+...+=.
T Consensus 203 ~av~~TD~iQ~ 213 (551)
T PRK09395 203 LATTWVQIIKA 213 (551)
T ss_pred HHHHHHHHHHH
Confidence 77666666443
No 76
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.97 E-value=12 Score=35.93 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCccccchhhhhH---HHHHHHHHhhhhhhhhhcccC---CC-CchhhhcccCC---chHHHHHHHHHHHHHHHHhhhc
Q 016317 202 EKPSKILMWKGALG---AYFVNAICYFPVALIGYWAFG---QD-VDDNVLMALKR---PGWLIAAANLMVVVHVIGSYQV 271 (391)
Q Consensus 202 ~~p~~~~~~~~~~~---~~~~~~i~y~~~g~~gy~~fg---~~-~~~~il~n~~~---~~~~~~~~~~~~~i~~~~s~pl 271 (391)
+||++ ..++.... +......+|...+..|...-+ +. ..+.++.+..+ .+++..+..+...++.+++---
T Consensus 209 ~~~~~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iG 287 (378)
T TIGR00796 209 TKPKK-ITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVG 287 (378)
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 66765 33344443 445555667666666654422 21 23344444321 2345556666666666666655
Q ss_pred ccccHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHH
Q 016317 272 FAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 345 (391)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~ 345 (391)
......|.+++...+ .+...+ -....+.+..++. -.++.++++ +...+.+++|...-+..
T Consensus 288 li~~~a~~f~~~~~k-----~~y~~~---v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 288 LTTACSEYFHKLVPK-----LSYKTW---VIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHHHHHhcCC-----CCHHHH---HHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 555555555555321 111111 1222222333332 256666664 46677888887654433
No 77
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=91.78 E-value=15 Score=36.64 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=41.4
Q ss_pred cccHHHHHHHhhCCCccCcee---hhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIV---LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 120 (391)
..|..|.-++-||+| .|.+. .+...+........-+...+..++.++ +.+...-.++..++..-.+..
T Consensus 103 ~~T~~e~l~~Ryg~~-~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~ 173 (487)
T TIGR02121 103 SITLPDFFENRFNDK-SRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFF 173 (487)
T ss_pred CccHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHh
Confidence 458999999999964 33332 222222211112222222333333331 233344445555666666677
Q ss_pred CCCchhhHHHHHHHH
Q 016317 121 PDINSVSSVSLAAAV 135 (391)
Q Consensus 121 ~~~~~l~~~s~~~~~ 135 (391)
--++...+...+=.+
T Consensus 174 GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 174 GGFLAVSWTDFVQGL 188 (487)
T ss_pred hhHHHHHHHHHHHHH
Confidence 677776666655433
No 78
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=91.55 E-value=11 Score=38.94 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=70.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcc--cCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHE--CVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 87 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l 87 (391)
|...|..+.+++++.+..|..=|..-+- ..|+.. +|--+.+.. ||.+| -.+.++...-+--....|++..-+++
T Consensus 145 Gv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISRsL-GPEFG-gAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 145 GVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISRSL-GPEFG-GAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEeccc-Ccccc-ceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 6667777777777777766544433221 123333 777666654 77777 56676666555555556666555544
Q ss_pred HH-HHHHHh--cC-C---C----CCcchhhHHHHHH--HHHHhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 016317 88 KK-FVEMAC--SH-C---K----PLRQTFWILIFGS--LHFFLSQLPDINSVSSVSLAAAVMSLSYSTI 143 (391)
Q Consensus 88 ~~-~~~~~~--~~-~---~----~~~~~~~~ii~~~--~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i 143 (391)
=. +++... +. . + ..+.|++-.++.+ .++.+.=.|-.+.++.++..+++.+++.+-.
T Consensus 221 L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiya 289 (1075)
T KOG2082|consen 221 LTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYA 289 (1075)
T ss_pred HHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33 222211 00 0 0 1233444433333 3333444567778888888888877654433
No 79
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=91.23 E-value=14 Score=35.10 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.|..|+-++-+-.+.-.|...+.+.+...+..++..+..++.++...+ .+...-.++++.....-....-++
T Consensus 106 ltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------idY~tgL~ifa~~V~iYt~fGGFR 177 (473)
T COG4145 106 LTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------IDYTTGLLIFAVSVAIYTAFGGFR 177 (473)
T ss_pred eeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------CCchhhHHHHHHHHHHHHhhccee
Confidence 489999999985556668888888888888888888888887777633 333455566666666666665555
Q ss_pred hhh
Q 016317 125 SVS 127 (391)
Q Consensus 125 ~l~ 127 (391)
...
T Consensus 178 Avv 180 (473)
T COG4145 178 AVV 180 (473)
T ss_pred eee
Confidence 533
No 80
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=90.33 E-value=23 Score=36.06 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=46.4
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 123 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~ 123 (391)
..|-.|.-++-||+|..|++..+...+.........+...+..++.+. +.+...-.++..++.+-.+..--+
T Consensus 94 ~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------gi~~~~~iii~~~i~~iYt~~GG~ 165 (552)
T TIGR03648 94 KYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------EVDFETGVFIGMAIVFFYAVLGGM 165 (552)
T ss_pred CccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhH
Confidence 358899999999876556665555544444443333433344443332 233344444555666666666667
Q ss_pred chhhHHHHHH
Q 016317 124 NSVSSVSLAA 133 (391)
Q Consensus 124 ~~l~~~s~~~ 133 (391)
+...+.-.+=
T Consensus 166 ~aV~~TD~iQ 175 (552)
T TIGR03648 166 KGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHHH
Confidence 7666655544
No 81
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=90.06 E-value=17 Score=36.70 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhh-cccccccccccc-cCCCCcchHHHHHHHHHHHHHHhccccee
Q 016317 113 LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSL-SHGRIENVSYAY-KHTSSADYMFRVFNALGQISFAFAGHAVA 190 (391)
Q Consensus 113 ~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 190 (391)
.+.-+...|-+++...+.......-.+..++..+.+. ..+..++.++-. .+...-.+..-...++++..|+...-.-.
T Consensus 189 ~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~ 268 (523)
T PF00209_consen 189 LIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGI 268 (523)
T ss_dssp HHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSH
T ss_pred HHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcce
Confidence 4445566788888777766655422222222222222 222223322111 11222223345678899999998654444
Q ss_pred hhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhh
Q 016317 191 LEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 228 (391)
Q Consensus 191 ~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g 228 (391)
...+.+. ++++.+..+............-+..|
T Consensus 269 ~it~~Sy-----~~~~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 269 MITYGSY-----NKFKNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHHHHTT-----S-TTS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EEEEcCc-----CCCCccccccceEEEcCchhhhHhHH
Confidence 4555553 33333444545444444444443333
No 82
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=88.42 E-value=0.62 Score=46.32 Aligned_cols=211 Identities=15% Similarity=0.162 Sum_probs=107.3
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHH---HHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhhe
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNTM---WQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDI 77 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s~---~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~ 77 (391)
++|.+-|+ |...|.+++.....++..|. .-+.+..+...+. .|--++ +..|+.+| -...++..+.+.-.+.
T Consensus 53 l~wivgqa-gi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis-~slg~efg-gsigiIy~f~~aVa~a 126 (643)
T KOG2083|consen 53 LGWIVGQA-GIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLIS-RSLGPEFG-GSIGIIYAFANAVATA 126 (643)
T ss_pred hhheeecc-hhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEE-eccccccc-chhHHHHHHHHHHHHH
Confidence 46766665 99888887777666655543 3333322222222 343333 33476666 3445555555666778
Q ss_pred eeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCC--CCchhhHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 016317 78 VYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLP--DINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIE 155 (391)
Q Consensus 78 ~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~--~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 155 (391)
.|.+..+|..-++++.... .-.+. ...+..++++-.+..+ .-..++.+-.+-...++.-.++..... ....+.
T Consensus 127 m~~vgfaEsv~~l~~~~s~--~~i~g--i~~vt~~ill~i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~-~~~~~~ 201 (643)
T KOG2083|consen 127 MYVVGFAESVAHLFETESK--EMIDG--IGSVTVLILLAINVAGVEWEAKLQIVLLLILLIAIADFLVGSFFS-PNEFSS 201 (643)
T ss_pred HhhhhHHHHHHHHHHhccH--HHhcc--hhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhhhccC-hhhhcc
Confidence 8999999999998887531 11111 2223333333333332 222222222111111111011100000 000110
Q ss_pred c-cccccc----CC-CCcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhh
Q 016317 156 N-VSYAYK----HT-SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV 227 (391)
Q Consensus 156 ~-~~~~~~----~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~ 227 (391)
+ ..+..+ +. ++..+-..+++.|+++.-+..|...=..+-+++ ++|++ ..++....+......+|..+
T Consensus 202 g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL----~~Pq~-~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 202 GFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDL----KDPQK-AIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred cccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCC----CCchh-hcccchhhhhhhhhhhhhhh
Confidence 1 011111 11 111122367777888888886655555566666 88988 67899999999999999654
No 83
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=88.11 E-value=1.5 Score=41.32 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=82.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHh--CcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeecccc
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMIN--LHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC 86 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~--~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~ 86 (391)
-||+++.+-+++-+++ .-..|-... .+.|++++ |.+|++++-.||+ +|.+..+..++.+.....++....++.
T Consensus 80 ~GwlPa~lWI~~G~if-~GaVHD~~sl~~SvR~~G~---Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 80 FGWLPALLWIVFGCIF-AGAVHDYGSLMASVRHKGK---SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred hcchHHHHHHHHccHH-HHHHHHHHHHhhhhcCCCc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3676666554433222 222222222 23345554 9999999999986 777877777777666666665544444
Q ss_pred HHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCC
Q 016317 87 LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSS 166 (391)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 166 (391)
+.+. +......++.+...+.+-+..-|+--++...+.++++..+.. +...... | .+. .
T Consensus 155 ~~~~--------p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~~~----v~~G~~~--p--~~~------~ 212 (376)
T PF02554_consen 155 FVNS--------PWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLLLA----VWLGMYF--P--ISL------L 212 (376)
T ss_pred hccC--------hhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHHHH----HHhhhhc--c--ccc------C
Confidence 4321 111122333344444444444444445666666666643221 1111111 0 000 0
Q ss_pred cchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccc
Q 016317 167 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKI 207 (391)
Q Consensus 167 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~ 207 (391)
.. ...-.+.+.|..-.++.|+-.= -+|++.
T Consensus 213 ~~------~~W~~ii~~Y~~iAs~lPVw~L-----lqprdy 242 (376)
T PF02554_consen 213 SV------TTWIIIIFIYYFIASVLPVWKL-----LQPRDY 242 (376)
T ss_pred cH------HHHHHHHHHHHHHHHHhhHHHH-----hCchHH
Confidence 11 1123467777778888888875 456653
No 84
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.91 E-value=1.2 Score=42.69 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=54.7
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCc
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
.-..+++++.+|+ .|+.+..+...+.|++++++.....+|..+++.+ ..+.+.|.++.++...-.+.. .++
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s~~ia~~-Gl~ 325 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFSFIVANL-GLT 325 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHh-CHH
Confidence 4778999999998 6999999999999999999999887777666532 245566766666655544443 444
Q ss_pred hhhH
Q 016317 125 SVSS 128 (391)
Q Consensus 125 ~l~~ 128 (391)
++-.
T Consensus 326 ~Ii~ 329 (378)
T TIGR00796 326 QIIS 329 (378)
T ss_pred HHHH
Confidence 4333
No 85
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=87.14 E-value=31 Score=33.63 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHhcccceehhhhcc
Q 016317 169 YMFRVFNALGQISFAFAGHAVALEIQAT 196 (391)
Q Consensus 169 ~~~~~~~~~~~~~faf~~~~~~~~i~~~ 196 (391)
+.+-+..++|+..|+..--....-.+++
T Consensus 212 ~~~v~~~AlGQ~FFsLSlG~g~mitYsS 239 (439)
T COG0733 212 DPKVWLAALGQAFFSLSLGFGIMITYSS 239 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788899998886443333333444
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=86.43 E-value=35 Score=33.55 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=14.9
Q ss_pred cHHHHHHHhhCCCccCceehhhh
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQ 68 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~ 68 (391)
+..|+.++-+||++. +..-+..
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~ 116 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQA 116 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHH
Confidence 789999999997543 4433333
No 87
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=85.33 E-value=20 Score=36.78 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhh
Q 016317 172 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 231 (391)
Q Consensus 172 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~g 231 (391)
++-+.||++.-+=.|...=...-.|+ |+|++ .++|....+...+++.|+++.++-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 35555666555544444433445665 99998 789999999999999999876654
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=83.65 E-value=46 Score=32.54 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhhhhhhhhcccC---CCCch-hhhcccCC---chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhh
Q 016317 214 LGAYFVNAICYFPVALIGYWAFG---QDVDD-NVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK 286 (391)
Q Consensus 214 ~~~~~~~~i~y~~~g~~gy~~fg---~~~~~-~il~n~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 286 (391)
..+.....++|...+..|...-+ ++.++ .++.+..+ .+.+..+..+.+.+..+++---....+.|-+++...
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~- 307 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP- 307 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 35666666778887777755443 34443 45544422 234555566666666666666566666777777664
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccchhHhhhHHHHHHHH
Q 016317 287 RMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 345 (391)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~ 345 (391)
+ .+...+.. ...+.+.++| .=.++.++++ +...+.++.|...-+..
T Consensus 308 k----isY~~~v~---i~~i~S~~ia--n~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 308 K----ISYKVWVI---IFTIFSFIIA--NLGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred c----cChHHHHH---HHHHHHHHHH--HhCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 1 11111111 1112222222 1234555544 46788899998765554
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=82.62 E-value=3.6 Score=40.06 Aligned_cols=68 Identities=15% Similarity=0.370 Sum_probs=55.4
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 120 (391)
.-..+++++.+|+ .|+.+..+...+.|+-++++-....+|..++..++ .+.+.|.++.+++...++..
T Consensus 261 ~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------isY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 261 ELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------ISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHHHHHHHHHHHh
Confidence 4788899999998 79999999999999999999999888888887552 45577877777776655544
No 90
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=70.04 E-value=37 Score=29.10 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=49.9
Q ss_pred chhhhhhhhccccchhHhhhHHHHHHHHhCCC----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016317 318 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK----------RFSPKWIINWASIFIGVFIMLASTIGGFRNIVA 382 (391)
Q Consensus 318 ~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~ 382 (391)
++.-.-+.|++.++-+..++|+...+...+++ .++.+-+.+++.-.+|++..+.+...|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566778999999999999999999888763 123334667777788888888888888877765
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=63.89 E-value=7.9 Score=37.20 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=66.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCccc---CCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeecccc
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHEC---VPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC 86 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~ 86 (391)
|++.++.+..+-..+.+.. -.+++ .-+++.+=..+..++.||+ .|+.+...++...|.-++++-..-.+|.
T Consensus 230 glIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 230 GLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555554444444 22211 1111223678889999997 8999999999999999999999988888
Q ss_pred HHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcC
Q 016317 87 LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120 (391)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 120 (391)
.++.+++ .+.+.|..++.++..-.+-+
T Consensus 304 F~~~~p~-------~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 304 FSKLVPK-------LSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHhccc-------ccHHHHHHHHHHHHHHHHHh
Confidence 8887553 45567777777666655443
No 92
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=61.35 E-value=94 Score=30.32 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=57.5
Q ss_pred HhhhcccccHHHHHHHHHhhh---c-------CCCCchhHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhccccchhHh
Q 016317 267 GSYQVFAMPVFHLLEGMMIKR---M-------NFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSY 335 (391)
Q Consensus 267 ~s~pl~~~p~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~l~Ga~~~~~l~~ 335 (391)
.++|.+.++.+......+.-. . +..+.+..|..........+.+.++..|. +....+..|++.....+-
T Consensus 284 ~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~ 363 (415)
T COG0814 284 LSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAP 363 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 667777777765544422211 0 01233444666777777778888888875 778888899999999999
Q ss_pred hhHHHHHHHHhCCC
Q 016317 336 FLPSIMWLVIKKPK 349 (391)
Q Consensus 336 ilP~l~~l~~~~~~ 349 (391)
++|.+++++-++..
T Consensus 364 i~~~ll~~~p~~~~ 377 (415)
T COG0814 364 IIPALLFIKPRKLI 377 (415)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998886544
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=58.82 E-value=7.8 Score=37.86 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|++.++.+.++-..+.+....--.. .+ ...++..=.....++.+|+ +|+.+..+.+.+.|+-++++-....+|.+++
T Consensus 232 g~ia~~~L~~vY~gL~~lGa~s~~~-~~-~~~~g~~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 232 GLMAGVGLTLLYLALFRLGSDSASL-VD-QSANGAAILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc-cc-CCCcHhHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5655555555555555444311100 00 0112223556778899998 7999999999999999999988877777666
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcC
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQL 120 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~ 120 (391)
.. +.+.+.|.++.+++..+++..
T Consensus 309 ~~--------~isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 309 YV--------PLSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred hc--------CCcHHHHHHHHHHHHHHHHHh
Confidence 42 256678888888888887766
No 94
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=53.60 E-value=81 Score=31.65 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=37.4
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
...++-..+.||| |.......+++..+..+++-++-.+.......++.
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg 373 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDG 373 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccC
Confidence 6778888888998 55777888888888888888887777777766553
No 95
>CHL00020 psbN photosystem II protein N
Probab=51.61 E-value=14 Score=23.03 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhcccCCCC
Q 016317 211 KGALGAYFVNAICYFPVALIGYWAFGQDV 239 (391)
Q Consensus 211 ~~~~~~~~~~~i~y~~~g~~gy~~fg~~~ 239 (391)
.+...+..+..++..+.|...|.+||+-.
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 34567778888888888889999999753
No 96
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=50.14 E-value=17 Score=22.95 Aligned_cols=29 Identities=24% Similarity=0.048 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhcccCCCC
Q 016317 211 KGALGAYFVNAICYFPVALIGYWAFGQDV 239 (391)
Q Consensus 211 ~~~~~~~~~~~i~y~~~g~~gy~~fg~~~ 239 (391)
.+...+..+..++..+.|...|.+||+-.
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 55667778888888888889999999753
No 97
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=49.09 E-value=16 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhcccCCCCc
Q 016317 212 GALGAYFVNAICYFPVALIGYWAFGQDVD 240 (391)
Q Consensus 212 ~~~~~~~~~~i~y~~~g~~gy~~fg~~~~ 240 (391)
+...+..+..++-.+.|...|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34566777778888888888999996443
No 98
>PRK15015 carbon starvation protein A; Provisional
Probab=48.32 E-value=33 Score=35.14 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHh--CcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhh
Q 016317 9 IYMGPGTMVLVISWVTTLNTMWQMIN--LHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGC 75 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~~~s~~~l~~--~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~ 75 (391)
.||.+|.+-+++-.++ .-..|-..- .+.|++++ |.+|++++-.|++ ++.+..+..++.....
T Consensus 111 ~GwlP~~LWIl~G~vf-~GaVhD~~~L~~S~R~~Gr---Sig~ia~~~iG~~-~~~lfli~i~~iliiv 174 (701)
T PRK15015 111 MGYLPGMIWLLAGVVL-AGAVQDFMVLFVSTRRDGR---SLGELVKEEMGPT-AGVIALVACFMIMVII 174 (701)
T ss_pred HcchHHHHHHHHccee-echhhhhhheeeeecCCCc---cHHHHHHHHhhHH-HHHHHHHHHHHHHHHH
Confidence 4777776555443222 222222222 22334443 9999999999986 6556555554444333
No 99
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=43.83 E-value=36 Score=24.79 Aligned_cols=67 Identities=9% Similarity=0.168 Sum_probs=40.1
Q ss_pred HHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhh-HHHHHHHHHhhhhhhhhhcccCCCCchhhhcccCC
Q 016317 176 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL-GAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKR 249 (391)
Q Consensus 176 ~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~~~~~~~i~y~~~g~~gy~~fg~~~~~~il~n~~~ 249 (391)
..|+...+-+|...+.++-+.= .+|++.. +|++. .+++.. .-+..|++.|..||...++.....+++
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~FIlG--~vl~lGilifs~y~~C~~~~~~~r~n~ 83 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTCFIVG--AVLLLGLFVFSMYRKCSGSMPYERLNN 83 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCceeecccC
Confidence 4566666777777777777751 3666754 34444 333333 234567888988886665544455543
No 100
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=37.87 E-value=3.8e+02 Score=25.89 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc--ccchhhhhhhhccccchhHhhhHHHH
Q 016317 293 GAAVRVVARSAYVAFTLFVGVTF--PFFGDLLGFFGGFGFTPTSYFLPSIM 341 (391)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~ia~~i--p~~~~v~~l~Ga~~~~~l~~ilP~l~ 341 (391)
++.++...|.+.+..+.+++... .+...++.+. .....+.+|...
T Consensus 331 ~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~a----Qv~~~l~LP~~~ 377 (390)
T TIGR01197 331 PWLRRLITRAIAIIPCLLVAAFGGREGLTGALNAS----QVVLSLLLPFAL 377 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH----HHHHHHHHHHHH
Confidence 55666667776666666666553 3344454444 445667777643
No 101
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=34.37 E-value=23 Score=20.85 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=13.2
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHHH
Q 016317 2 PWLTWDGIYMGPGTMVLVISWVTTLNTMW 30 (391)
Q Consensus 2 P~a~~~~~G~i~g~i~l~~~~~~~~~s~~ 30 (391)
||+ |+. || +++++.+--++..|=.+
T Consensus 11 ~Y~-frt-~W--a~llLaINflVAayYFh 35 (37)
T PF08078_consen 11 PYT-FRT-GW--ALLLLAINFLVAAYYFH 35 (37)
T ss_dssp ----HHH-HH--HHHHHHHHHHHHHHHHT
T ss_pred Cee-hhH-HH--HHHHHHHHHHHHHHHhe
Confidence 787 443 88 56677666666655443
No 102
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=34.17 E-value=4.7e+02 Score=25.80 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhhhhhhhhcc---cCCC-CchhhhcccC---CchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Q 016317 214 LGAYFVNAICYFPVALIGYWA---FGQD-VDDNVLMALK---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM 284 (391)
Q Consensus 214 ~~~~~~~~i~y~~~g~~gy~~---fg~~-~~~~il~n~~---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 284 (391)
..+.....++|...+..|... +++. ..+.++...- -++++..+..+.+.+..+++---....+.|-+++..
T Consensus 233 ~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~ 310 (439)
T PRK15433 233 LMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV 310 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666667788887777644 3322 2334554432 123555555566666666666555555556555543
No 103
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=33.14 E-value=4.7e+02 Score=25.79 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=34.9
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
.+.++.+.++|.+++..++.+...+..+++..+.+...+..+..+.++
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888887656556677777777887777777777777666554
No 104
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=32.17 E-value=1.7e+02 Score=25.08 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016317 335 YFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTY 387 (391)
Q Consensus 335 ~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~~~~~~ 387 (391)
=++|.++-+...+|++.+.-+...+...++|+.-...|......+..+-+++.
T Consensus 81 S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~ 133 (186)
T PF07086_consen 81 SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHG 133 (186)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35566666666666654444455566677777777777777777666655553
No 105
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=31.88 E-value=82 Score=25.92 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=40.0
Q ss_pred hhhhccccchhHhhhHHHHHHHHhCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Q 016317 323 GFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSPKWIINWASIFIGVFIMLASTIGGFRNIVAD-AST 386 (391)
Q Consensus 323 ~l~Ga~~~~~l~~ilP~l~~l~~~~~-~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~~-~~~ 386 (391)
...|+..+....|..|.+.+....+. +.....+-.-.+-+++|+..+++++..+-+...++ .++
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~ 98 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNS 98 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466667788999999776542211 11111123445677889999999988877776643 444
No 106
>PRK09950 putative transporter; Provisional
Probab=28.55 E-value=6.2e+02 Score=25.49 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=46.6
Q ss_pred cccHHHHHHHhhCCC----ccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhc
Q 016317 44 FDRYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ 119 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~----~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~ 119 (391)
..+..+..+-.+|+| +| .++|+...+...+....-+=+....++.-.++..+...+...+...+....++.-++.
T Consensus 166 pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~ 244 (506)
T PRK09950 166 GLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLSS 244 (506)
T ss_pred CCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 346777777777753 45 3566665555555444444444444444444443221111112222222334444555
Q ss_pred CCCC-chhhHHHHHHHHHHHH
Q 016317 120 LPDI-NSVSSVSLAAAVMSLS 139 (391)
Q Consensus 120 ~~~~-~~l~~~s~~~~~~~~~ 139 (391)
..-+ |-.+++|.+.+...+.
T Consensus 245 ~~Gl~kGIk~LS~~N~~la~~ 265 (506)
T PRK09950 245 YIGIDNGLQRLSKMVGWGAFL 265 (506)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 5455 5566677666665443
No 107
>PLN02680 carbon-monoxide oxygenase
Probab=27.54 E-value=4.4e+02 Score=23.43 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=45.1
Q ss_pred cchhhhhHHHHHHHHHhhhhhhhhhcccCCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhhcccccH
Q 016317 208 LMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPV 276 (391)
Q Consensus 208 ~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 276 (391)
+.+|.+-...=.......++|+.....+.|+. ++.+-++-..|.-...-.++.++.+..+....+|-
T Consensus 77 ~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 77 NLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34466666666777777788886655555543 33333333568877888889999999988877774
No 108
>TIGR00909 2A0306 amino acid transporter.
Probab=27.12 E-value=1.9e+02 Score=28.03 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=36.4
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
...+..++..|+ ++..++.+...+.++++..+.....+..+....++
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777676 56678888989999999988888888887776544
No 109
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=26.64 E-value=6.2e+02 Score=25.76 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=20.2
Q ss_pred CCCccCceehhhhhhhhhhhheeeeeeccccHHHHHH
Q 016317 56 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 92 (391)
Q Consensus 56 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 92 (391)
|.+++..++.+......+++..+.+...+..+..+.+
T Consensus 309 g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amar 345 (557)
T TIGR00906 309 GWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMAR 345 (557)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4334555556655556666655565555555555443
No 110
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.17 E-value=1.9e+02 Score=23.51 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=29.0
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCC
Q 016317 344 VIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFY 390 (391)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~~i~~li~~~~~~~~~ 390 (391)
+..+.+.++..+...+.+-.++.++++.|.+...++ -++-+..|+|
T Consensus 30 ~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~-h~~~~~~hf~ 75 (143)
T cd08763 30 RVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDY-HQANGYPDMY 75 (143)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-ccccCCCccc
Confidence 333433334455688888899999999998877643 2233444554
No 111
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=22.11 E-value=8.1e+02 Score=24.60 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=85.0
Q ss_pred ccHHHHHHHhhCC---CccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcC-----C----CCC--cchhhHHHH
Q 016317 45 DRYIDLGRHAFGP---KLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSH-----C----KPL--RQTFWILIF 110 (391)
Q Consensus 45 ~~y~~l~~~~~G~---~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-----~----~~~--~~~~~~ii~ 110 (391)
.+++=..|..||= .|+ .+..+.+.+..+|. ..-..++..+.+++...+. + ... .+....+++
T Consensus 118 IsFpv~sR~sFGiygS~~p-Ii~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIF 193 (572)
T KOG2466|consen 118 ISFPVLSRSSFGIYGSLWP-IINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIF 193 (572)
T ss_pred cceeeeeeeehhhhHhHHH-HHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHH
Confidence 4666666777763 232 34444444444444 2334556555555544311 0 111 222333455
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHH--HHHHHHhhhhcccccccccccccCCCCcchHHHHHHHHHHHHHHh-ccc
Q 016317 111 GSLHFFLSQLPDINSVSSVSLAAAVMSLS--YSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAF-AGH 187 (391)
Q Consensus 111 ~~~~~pl~~~~~~~~l~~~s~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~ 187 (391)
=++-.|..+.| ..+++.+-....+.+.. +..+++...-.++.-+-.+ +..+.......|.+..++.-.+=.| ...
T Consensus 194 wv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~-~~st~~gs~~aWa~~~~i~~~~~~fstl~ 271 (572)
T KOG2466|consen 194 WVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFD-SKSTVSGSAHAWAFVRSIMSCIANFSTLI 271 (572)
T ss_pred HHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCcccccc-CCCcccccchhHHHHHHHHHHHhccchhh
Confidence 55666666653 33334333333332221 1222333222333222111 1111222333355555544444444 234
Q ss_pred ceehhhhccCCCCCCCCccccchhhh--hHHHHHHHHHhhhhhhhhhcccCCCCch--hhhccc
Q 016317 188 AVALEIQATIPSTPEKPSKILMWKGA--LGAYFVNAICYFPVALIGYWAFGQDVDD--NVLMAL 247 (391)
Q Consensus 188 ~~~~~i~~~m~~~~~~p~~~~~~~~~--~~~~~~~~i~y~~~g~~gy~~fg~~~~~--~il~n~ 247 (391)
.|.|..-+=- ++|++-.....+ -..+.+..++=++.+-.++..||.+.-+ +++.++
T Consensus 272 ~N~pDFsRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 272 VNAPDFSRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred ccCchhHhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 4555555432 555543322222 2344444444555566789999987443 566554
No 112
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=21.76 E-value=4.6e+02 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHh
Q 016317 250 PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI 285 (391)
Q Consensus 250 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 285 (391)
.+....-.++........+.|...+-.-..+...+.
T Consensus 54 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy 89 (215)
T TIGR00945 54 TEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLY 89 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 355666788999999999999877755444444443
No 113
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=20.39 E-value=3.1e+02 Score=19.34 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcccCcCCC
Q 016317 371 ASTIGGFRNIVADASTYSFYT 391 (391)
Q Consensus 371 ~g~~~~i~~li~~~~~~~~~~ 391 (391)
+-.|.++.=+-++++++|.|.
T Consensus 18 ~lfYy~~~w~~~~~~~~hrY~ 38 (71)
T PF14004_consen 18 LLFYYAILWVSDEYEPYHRYD 38 (71)
T ss_pred HHHHHHHHHHHHHhccCCCCC
Confidence 456888888889999999884
Done!