Query 016317
Match_columns 391
No_of_seqs 102 out of 1167
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.2 2.6E-10 9.1E-15 110.6 16.1 324 10-350 39-380 (445)
2 3gia_A Uncharacterized protein 98.9 2.9E-08 9.9E-13 96.2 16.5 316 10-350 38-370 (444)
3 4djk_A Probable glutamate/gamm 98.9 5.9E-08 2E-12 95.8 17.5 241 28-280 57-316 (511)
4 2jln_A MHP1; hydantoin, transp 97.3 0.01 3.5E-07 58.0 17.8 87 46-138 89-176 (501)
5 3dh4_A Sodium/glucose cotransp 94.9 0.58 2E-05 45.8 15.1 84 44-136 82-166 (530)
6 2xq2_A Sodium/glucose cotransp 90.7 14 0.00047 36.5 20.6 83 44-135 111-194 (593)
7 2a65_A Leutaa, Na(+):neurotran 73.3 69 0.0023 30.9 17.7 121 113-238 177-309 (519)
8 3l1l_A Arginine/agmatine antip 33.9 2.3E+02 0.0077 26.0 10.1 48 45-93 260-307 (445)
9 1jb0_X Photosystem I subunit P 25.7 41 0.0014 18.8 1.8 24 1-28 7-30 (35)
10 3gia_A Uncharacterized protein 14.4 1.3E+02 0.0045 27.7 4.0 48 46-94 259-306 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.20 E-value=2.6e-10 Score=110.64 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=166.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK 89 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~ 89 (391)
|- .+++..++.++..........|...+.|+.. ..-+..++.+||++| ++..+..++.......++....++.++.
T Consensus 39 G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 114 (445)
T 3l1l_A 39 GG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSY 114 (445)
T ss_dssp CT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 3677777778888888888888777666543 667788999998766 6666666665544444444433333332
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcch
Q 016317 90 FVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADY 169 (391)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (391)
.++... .+.....+.+ ...++.-....+..|....++.+.....+...++..+.......++....+.+ ......
T Consensus 115 ~~~~~~---~~~~~~~~~~-~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 189 (445)
T 3l1l_A 115 FFPILK---DPWVLTITCV-VVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGT 189 (445)
T ss_dssp TCGGGG---SHHHHHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC---------
T ss_pred HCcccc---ccHHHHHHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCcc
Confidence 221110 0011111111 11122222233455666666555544333222222222222211111111110 111223
Q ss_pred HHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCc----hhh--
Q 016317 170 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNV-- 243 (391)
Q Consensus 170 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~----~~i-- 243 (391)
..++..++....|+|.+........+|+ |||+| +.+|+...+..++.++|....+......+.+.- ++.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGD 264 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHH
Confidence 5678889999999999999999999997 88976 778999999999999999887766555553321 111
Q ss_pred -hcccCCchHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhc------CC-CCchhHHHHHHHHHHHHHHHHHhhc
Q 016317 244 -LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------NF-PPGAAVRVVARSAYVAFTLFVGVTF 315 (391)
Q Consensus 244 -l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~ia~~i 315 (391)
..+.. .++...+..+...+..+.+.--......+.+...-+.+. +. +++...+...-...+...+.+....
T Consensus 265 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~ 343 (445)
T 3l1l_A 265 AARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSIS 343 (445)
T ss_dssp HHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 11111 123444445555555555444444444344433332110 00 1112222222222211111111112
Q ss_pred c----cchhhhhhhhccccchhHhhhHHHHHHHHhCCCC
Q 016317 316 P----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 350 (391)
Q Consensus 316 p----~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 350 (391)
| .++.+.++.+ .+..+.|.++++.+++.+++++
T Consensus 344 ~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 344 PNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 3 3555555543 3457889999999999987765
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.91 E-value=2.9e-08 Score=96.19 Aligned_cols=316 Identities=9% Similarity=-0.001 Sum_probs=165.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHhhCCCc-cCceehhhhhhhhhhhheeeeeeccccHH
Q 016317 10 YMGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLK 88 (391)
Q Consensus 10 G~i~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~-g~~~v~~~~~~~~~g~~~~y~i~~~~~l~ 88 (391)
|- .+++..++.+++.......+.|...+.|+.. ..-+..++.+||++ +.+ +....++........+....++.+.
T Consensus 38 G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~ 113 (444)
T 3gia_A 38 GR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFL 113 (444)
T ss_dssp GG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4667777788888888888888777676543 56788899999863 222 2334444433333344444444443
Q ss_pred HHHHHHhcCCCCCcchhhH-HHHH--HHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCC
Q 016317 89 KFVEMACSHCKPLRQTFWI-LIFG--SLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTS 165 (391)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-ii~~--~~~~pl~~~~~~~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 165 (391)
..++. .....+. ++.. .++.-..-.+..|....+........+...++..+.......+++ .. +..
T Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~--~~--~~~ 182 (444)
T 3gia_A 114 PLINA-------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSY--VI--PDL 182 (444)
T ss_dssp HHTTC-------CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGG--TS--CCC
T ss_pred HHhCC-------CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh--cC--CCC
Confidence 33211 1112221 1111 122222233455655555555444333222222222221111111 11 112
Q ss_pred CcchHHHHHHHHHHHHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCC-c---h
Q 016317 166 SADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-D---D 241 (391)
Q Consensus 166 ~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~-~---~ 241 (391)
.+..+.+++.+++...++|.|........+|+ |||+| +.+|+...+..++.++|....+......+.+. . +
T Consensus 183 ~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~ 257 (444)
T 3gia_A 183 APSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE 257 (444)
T ss_dssp SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGG
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccc
Confidence 23445678888899999999999999999997 89976 78899999999999999987766554444321 0 1
Q ss_pred hhhcccCC---chHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhc------CCCCchhHHHHHHHHHHHHHHHHH
Q 016317 242 NVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------NFPPGAAVRVVARSAYVAFTLFVG 312 (391)
Q Consensus 242 ~il~n~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ia 312 (391)
+.+....+ +++...+..+...+..+.+.--......+.+...-+.+. +.+++...+... ...+++.+++
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~--~~~~~~~~~~ 335 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLY--ITSALGVLFA 335 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHH--HHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHH--HHHHHHHHHH
Confidence 11111000 123333444455555555554444444444444332211 001111111111 1111222222
Q ss_pred hhcccchhhhhhhhccccchhHhhhHHHHHHHHhCCCC
Q 016317 313 VTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 350 (391)
Q Consensus 313 ~~ip~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 350 (391)
. +.+++.+.++.+. +..+.|.++.+.+++.+|+++
T Consensus 336 ~-~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 336 L-LFNMEGVASITSA--VFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp H-HSCHHHHHHHHHH--HHHHHHHHHHHHHHHTHHHHC
T ss_pred H-HcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 2 2467777777443 457888899888888776553
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.87 E-value=5.9e-08 Score=95.77 Aligned_cols=241 Identities=9% Similarity=0.006 Sum_probs=119.5
Q ss_pred HHHHHHhCcc--cCCCcccccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCC--CCcc
Q 016317 28 TMWQMINLHE--CVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK--PLRQ 103 (391)
Q Consensus 28 s~~~l~~~~~--~~~~~~~~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~ 103 (391)
....+.|... +.| .. ..-..+++.+||++| ++.....++.......++....++.++.+.. .+... .+..
T Consensus 57 ~al~~ael~s~~~~P-~G--G~y~~~~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~ 130 (511)
T 4djk_A 57 VGLCAAEMATVDGWE-EG--GVFAWVSNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILK--WPALNEDPITK 130 (511)
T ss_dssp HHHHHHHHHTTSCC------CHHHHHHHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT--CGGGTSCSSHH
T ss_pred HHHHHHHHcccccCC-CC--ChhhhHHhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccccCcHHH
Confidence 5666677666 666 43 677888999999876 6666666665555444444433433322210 01111 1111
Q ss_pred hhhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHH----HHHHHHHHhhhhcccccccccccccCCCCcchHHHHHHHHHH
Q 016317 104 TFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS----LSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQ 179 (391)
Q Consensus 104 ~~~~ii~~~~~~pl~~~~~~~~l~~~s~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (391)
..+.++ ..++.-+.-.+..+....+..+..... +...++........+.+.+.+.+.+...+.....+...++..
T Consensus 131 ~~~~~~-~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
T 4djk_A 131 TIAALI-ILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVA 209 (511)
T ss_dssp HHHHHH-HHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHH
T ss_pred HHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHH
Confidence 111111 122222223345555555554433321 111111111111112111111111111111111223456778
Q ss_pred HHHHhcccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhhhhhhhhhcccCCCCch---h-------hhcccC-
Q 016317 180 ISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD---N-------VLMALK- 248 (391)
Q Consensus 180 ~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~fg~~~~~---~-------il~n~~- 248 (391)
..++|.|........+|+ |||+| +.+|++..+..++.++|....+......+++... . +..+..
T Consensus 210 ~~~a~~G~e~~~~~a~E~----k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 284 (511)
T 4djk_A 210 FILSYMGVEASATHVNEM----SNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAP 284 (511)
T ss_dssp HHHHHTTGGGGTGGGSSS----SCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCS
T ss_pred HHHHHhhHHHHHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCc
Confidence 899999999999999997 89986 7889999999999999999877766666543211 1 112222
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 016317 249 RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLL 280 (391)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 280 (391)
...+...+..+...+..+.+.--.....-+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 316 (511)
T 4djk_A 285 EIEWTVRVISALLLLGVLAEIASWIVGPSRGM 316 (511)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01345555666666666655444444333333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.32 E-value=0.01 Score=58.00 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=61.6
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHHhcCCCCCc-chhhHHHHHHHHHHhhcCCCCc
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR-QTFWILIFGSLHFFLSQLPDIN 124 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~ii~~~~~~pl~~~~~~~ 124 (391)
++.++.|..||++ |..+..+...+.+.|....-....++.++..++... +.. .....+++.++.++..+. ..+
T Consensus 89 ~~~v~~R~~FG~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~----g~~~~~v~~~i~~~l~~~~~~~-G~~ 162 (501)
T 2jln_A 89 NFTVAARMPFGIR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT----GFTNLPLWIVIFGAIQVVTTFY-GIT 162 (501)
T ss_dssp CHHHHTTTTSCTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ChhhhhHhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHHHHHh-CHH
Confidence 7899999999985 777888888888888887777777888877766543 122 244556666677777644 667
Q ss_pred hhhHHHHHHHHHHH
Q 016317 125 SVSSVSLAAAVMSL 138 (391)
Q Consensus 125 ~l~~~s~~~~~~~~ 138 (391)
.++.+..++....+
T Consensus 163 ~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 163 FIRWMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766655433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.91 E-value=0.58 Score=45.85 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhh-hhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 122 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 122 (391)
..|..|.-++-||++ .|.+..+...+ +.+..+.+-+...+ ..++... +.+...-+++..++..-.+...-
T Consensus 82 ~~T~~e~l~~Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~----~~~~~~~----Gi~~~~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 82 IYTIPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGG----LALETIL----GIPLMYSILGLALFALVYSIYGG 152 (530)
T ss_dssp CCSHHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHH----HHHHHHT----TCCHHHHHHHHHHHHHHTTC---
T ss_pred CccHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh----CCCHHHHHHHHHHHHHHHHHhcc
Confidence 459999999999986 44444433222 11111111111111 1223322 34444455556666677777777
Q ss_pred CchhhHHHHHHHHH
Q 016317 123 INSVSSVSLAAAVM 136 (391)
Q Consensus 123 ~~~l~~~s~~~~~~ 136 (391)
++...+.-.+=.+.
T Consensus 153 l~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 153 LSAVVWTDVIQVFF 166 (530)
T ss_dssp ---CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77766666554443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=90.73 E-value=14 Score=36.53 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=40.0
Q ss_pred cccHHHHHHHhhCCCccCceehhhhhh-hhhhhheeeeeeccccHHHHHHHHhcCCCCCcchhhHHHHHHHHHHhhcCCC
Q 016317 44 FDRYIDLGRHAFGPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 122 (391)
Q Consensus 44 ~~~y~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~ 122 (391)
..|..|.-++-||++ .+.+..+...+ ..+.....-+...+..++. .. +.+.....++..++..-.+...-
T Consensus 111 ~~T~~e~l~~Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~----~~----Gi~~~~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 111 IYTIPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALET----IL----GIPLMYSILGLALFALVYSIYGG 181 (593)
T ss_dssp CCSHHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH----HH----CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc----CccHHHHHHHHHHHHHHHHHhcc
Confidence 459999999999975 44444333221 1111111111112222222 22 33444444556666677777777
Q ss_pred CchhhHHHHHHHH
Q 016317 123 INSVSSVSLAAAV 135 (391)
Q Consensus 123 ~~~l~~~s~~~~~ 135 (391)
++...+.-.+=.+
T Consensus 182 l~av~~TD~iQ~i 194 (593)
T 2xq2_A 182 LSAVVWTDVIQVF 194 (593)
T ss_dssp ---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7776666655444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=73.25 E-value=69 Score=30.93 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=57.1
Q ss_pred HHHHhhcCCCC-chhhHHHHHHHHHHHHHHHHHHhhhhc-cc----ccccccccc-cCCCCcchHHHHHHHHHHHHHHhc
Q 016317 113 LHFFLSQLPDI-NSVSSVSLAAAVMSLSYSTIAWAGSLS-HG----RIENVSYAY-KHTSSADYMFRVFNALGQISFAFA 185 (391)
Q Consensus 113 ~~~pl~~~~~~-~~l~~~s~~~~~~~~~~~~i~~~~~~~-~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~ 185 (391)
++.-++..|-+ +....++.+....-.+..++..+.+.. .+ ..++.++-. ++.+.-.+..-...+.+++.|+..
T Consensus 177 ~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLs 256 (519)
T 2a65_A 177 FINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLS 256 (519)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhH
Confidence 44445566666 556666665554333333333333322 22 222222111 112222233457888999999987
Q ss_pred ccceehhhhccCCCCCCCCccccchhhhhHHHHHHHHHhh-----hhhhhhhcccCCC
Q 016317 186 GHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYF-----PVALIGYWAFGQD 238 (391)
Q Consensus 186 ~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~i~y~-----~~g~~gy~~fg~~ 238 (391)
.-.-....+.+. ++++.+..+.........+..-+ +++..||.++|.+
T Consensus 257 lG~G~~ity~SY-----~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 257 LGFGAIITYASY-----VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp TTSSHHHHHHTT-----SCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHHhHHhhhhcc-----cCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 665555666653 34443444544433333333322 2334456544533
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.86 E-value=2.3e+02 Score=26.00 Aligned_cols=48 Identities=19% Similarity=0.079 Sum_probs=39.3
Q ss_pred ccHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHH
Q 016317 45 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 93 (391)
Q Consensus 45 ~~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 93 (391)
....++.++.+|+ ++..++.+...+..+++..++....+..+..+.++
T Consensus 260 ~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGD-TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCT-THHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3688999999997 57788888888888988888888888877777655
No 9
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=25.67 E-value=41 Score=18.80 Aligned_cols=24 Identities=8% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHH
Q 016317 1 MPWLTWDGIYMGPGTMVLVISWVTTLNT 28 (391)
Q Consensus 1 lP~a~~~~~G~i~g~i~l~~~~~~~~~s 28 (391)
.||+ ++. || +++++.+--++..|=
T Consensus 7 p~y~-frt-~W--alllLaINflVAayY 30 (35)
T 1jb0_X 7 PTYA-FRT-FW--AVLLLAINFLVAAYY 30 (35)
T ss_dssp CCCC-HHH-HH--HHHHHHHHHHHHHHH
T ss_pred CCcc-HHH-HH--HHHHHHHHHHHHHHH
Confidence 3887 443 88 556666665555543
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=14.41 E-value=1.3e+02 Score=27.69 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=38.2
Q ss_pred cHHHHHHHhhCCCccCceehhhhhhhhhhhheeeeeeccccHHHHHHHH
Q 016317 46 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 94 (391)
Q Consensus 46 ~y~~l~~~~~G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 94 (391)
...+..+...|+ ++..++.+...+..+++..+.+...+..+..+.++.
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 306 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLAKDG 306 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHS
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567778888886 677788888888888888888888888888877664
Done!