Query 016317
Match_columns 391
No_of_seqs 102 out of 1167
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 11:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 72.5 33 0.0024 30.7 24.9 27 170-196 237-263 (509)
2 d1q90g_ f.23.26.1 (G:) PetG su 8.3 94 0.0068 15.3 1.6 17 9-25 7-23 (30)
3 d1sfea1 a.4.2.1 (A:93-176) Ada 5.9 1.1E+02 0.008 19.6 1.5 19 39-57 15-33 (84)
4 d1nekc_ f.21.2.2 (C:) Succinat 5.7 4.2E+02 0.03 17.8 5.2 12 274-285 87-98 (129)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 5.4 2.3E+02 0.017 18.3 3.1 26 258-283 68-93 (103)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 5.0 6E+02 0.044 21.3 6.6 22 304-325 417-438 (472)
7 d1qnta1 a.4.2.1 (A:92-176) O6- 4.9 1.1E+02 0.0083 19.5 1.0 26 33-58 9-34 (85)
8 d1h9aa1 c.2.1.3 (A:1-181,A:413 4.0 1.3E+02 0.0096 22.6 1.0 29 319-347 5-33 (195)
9 d1txja_ b.88.1.2 (A:) Translat 3.4 1.9E+02 0.014 21.2 1.3 18 374-391 118-135 (171)
10 d1rh5b_ f.23.28.1 (B:) Preprot 3.3 2.2E+02 0.016 16.6 1.3 29 202-234 16-44 (56)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=72.53 E-value=33 Score=30.67 Aligned_cols=27 Identities=26% Similarity=0.084 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhcccceehhhhcc
Q 016317 170 MFRVFNALGQISFAFAGHAVALEIQAT 196 (391)
Q Consensus 170 ~~~~~~~~~~~~faf~~~~~~~~i~~~ 196 (391)
..-...+.++..|+++.-.-....+.+
T Consensus 237 ~~vW~~A~~Q~ffSlgiG~G~~i~~~S 263 (509)
T d2a65a1 237 PGVWIAAVGQIFFTLSLGFGAIITYAS 263 (509)
T ss_dssp HHHHHHHHHHHHHHHTTTSSHHHHHHT
T ss_pred hHHHHHHHHHHhhhhcccCCceeeehh
Confidence 345667899999998654444444554
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.32 E-value=94 Score=15.31 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=12.1
Q ss_pred cccchhHHHHHHHHHHH
Q 016317 9 IYMGPGTMVLVISWVTT 25 (391)
Q Consensus 9 ~G~i~g~i~l~~~~~~~ 25 (391)
.|+++|++-..+.+++.
T Consensus 7 ~GivlGlipiTl~Glfv 23 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFV 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHH
Confidence 38888888777776543
No 3
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=1.1e+02 Score=19.59 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=13.7
Q ss_pred CCCcccccHHHHHHHhhCC
Q 016317 39 VPGVRFDRYIDLGRHAFGP 57 (391)
Q Consensus 39 ~~~~~~~~y~~l~~~~~G~ 57 (391)
.|..+..||+|+++.+--+
T Consensus 15 Ip~G~v~TYg~iA~~~g~~ 33 (84)
T d1sfea1 15 IPCGETVSYQQLANAIGKP 33 (84)
T ss_dssp SCTTCCEEHHHHHHHTTCT
T ss_pred CCCCCeeeHHHHHHHhCCc
Confidence 4444567999999998434
No 4
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=5.75 E-value=4.2e+02 Score=17.83 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=8.5
Q ss_pred ccHHHHHHHHHh
Q 016317 274 MPVFHLLEGMMI 285 (391)
Q Consensus 274 ~p~~~~~~~~~~ 285 (391)
..+|+.+.+.-.
T Consensus 87 nGIRHL~wD~G~ 98 (129)
T d1nekc_ 87 VGIRHMMMDFGY 98 (129)
T ss_dssp HHHHHHHHHHTS
T ss_pred HhHHHHHHHccc
Confidence 577888887643
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.36 E-value=2.3e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHH
Q 016317 258 NLMVVVHVIGSYQVFAMPVFHLLEGM 283 (391)
Q Consensus 258 ~~~~~i~~~~s~pl~~~p~~~~~~~~ 283 (391)
|++..+.++.+..+...+.....+..
T Consensus 68 r~~~~~~~~~Gi~~~~~~~~~i~~~~ 93 (103)
T d1r3jc_ 68 RCVAVVVMVAGITSFGLVTAALATWF 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333433333333
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.97 E-value=6e+02 Score=21.29 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhcccchhhhhhh
Q 016317 304 YVAFTLFVGVTFPFFGDLLGFF 325 (391)
Q Consensus 304 ~~~~~~~ia~~ip~~~~v~~l~ 325 (391)
...+..++...+|.++.+++..
T Consensus 417 i~~~l~~~i~yiP~l~~vf~~~ 438 (472)
T d1wpga4 417 LSMSLHFLILYVDPLPMIFKLK 438 (472)
T ss_dssp HHHHHHHHHHHSTTTHHHHTCC
T ss_pred HHHHHHHHHHHhhHHHHHHccc
Confidence 3333344445688877776653
No 7
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=1.1e+02 Score=19.53 Aligned_cols=26 Identities=27% Similarity=0.134 Sum_probs=16.6
Q ss_pred HhCcccCCCcccccHHHHHHHhhCCC
Q 016317 33 INLHECVPGVRFDRYIDLGRHAFGPK 58 (391)
Q Consensus 33 ~~~~~~~~~~~~~~y~~l~~~~~G~~ 58 (391)
.+.-.+.|..+..||+|+++.+--++
T Consensus 9 w~~l~~IP~G~v~TYg~iA~~~g~p~ 34 (85)
T d1qnta1 9 WKLLKVVKFGEVISYQQLAALAGNPK 34 (85)
T ss_dssp HHHHHHCCTTCCEEHHHHHHHTTCTT
T ss_pred HHHHhcCCCCCcccHHHHHHHcCCcc
Confidence 34333455545679999999974443
No 8
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=4.03 E-value=1.3e+02 Score=22.56 Aligned_cols=29 Identities=34% Similarity=0.498 Sum_probs=23.8
Q ss_pred hhhhhhhhccccchhHhhhHHHHHHHHhC
Q 016317 319 GDLLGFFGGFGFTPTSYFLPSIMWLVIKK 347 (391)
Q Consensus 319 ~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 347 (391)
..++-+.||++.-..=-++|+++++....
T Consensus 5 ~t~lVIFGaTGDLa~RKL~PAL~~L~~~g 33 (195)
T d1h9aa1 5 KTLVTFFGGTGDLAKRKLYPSVFNLYKKG 33 (195)
T ss_dssp CEEEEEETTTSHHHHHTHHHHHHHHHHTT
T ss_pred ceEEEEECcccHHHHhHHHHHHHHHHHcC
Confidence 34455679999999999999999988765
No 9
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=3.36 E-value=1.9e+02 Score=21.24 Aligned_cols=18 Identities=17% Similarity=0.432 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcccCcCCC
Q 016317 374 IGGFRNIVADASTYSFYT 391 (391)
Q Consensus 374 ~~~i~~li~~~~~~~~~~ 391 (391)
-..++.+...+++++|||
T Consensus 118 ~~~vK~Il~nFkd~qFf~ 135 (171)
T d1txja_ 118 QPLIKHILTNFDDFEFYM 135 (171)
T ss_dssp HHHHHHHHHTGGGCEEEE
T ss_pred HHHHHHHHhhCccceEec
Confidence 345555556666666653
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.35 E-value=2.2e+02 Score=16.61 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCCccccchhhhhHHHHHHHHHhhhhhhhhhcc
Q 016317 202 EKPSKILMWKGALGAYFVNAICYFPVALIGYWA 234 (391)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~i~y~~~g~~gy~~ 234 (391)
++|++.-+.+... ++.+-..++|..||..
T Consensus 16 ~KP~~~Ef~~ia~----v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 16 KKPTKDEYLAVAK----VTALGISLLGIIGYII 44 (56)
T ss_dssp ECCCHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 6777655444333 3334455566666643
Done!