BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016318
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 162/327 (49%), Gaps = 41/327 (12%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
P S FD +G YT V DGR++ ++G + DFA+ S N++ C A +
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
+CGR + ++ + LYI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
G VYFTD ST Y R Q++ +++ TGR++KYDP+TK+TT+LL+ L P G +S
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
D SF + E ++ KYWL G K G E +P P N++ N G FWV
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
S+ ++ GR+ +K+ G IL+V+ +
Sbjct: 245 -------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285
Query: 365 ISEVEEKDGKLWMGSVLMPFVA--VYD 389
+++E DG L++G++ V VYD
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 160/323 (49%), Gaps = 39/323 (12%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
P S FD +G YT V DGR++ ++G + DFA+ S N++ C A +
Sbjct: 11 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 65
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
+CGR + ++ + LYI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 66 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
G VYFTD ST Y R Q++ +++ TGR++KYDP+TK+TT+LL+ L P G +S
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
D SF + E ++ KYWL G K G E +P P N++ N G FWV
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 235
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
S+ ++ GR+ +K+ G IL+V+ +
Sbjct: 236 -------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 276
Query: 365 ISEVEEKDGKLWMGSVLMPFVAV 387
+++E DG L++G++ V +
Sbjct: 277 FEQIQEHDGLLYIGTLFHGSVGI 299
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 155/327 (47%), Gaps = 41/327 (12%)
Query: 70 GPESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSN--NRSELCNPKPIATSYLK 125
P S FD +G YT V DGR+ ++G + DFA+ S N++ C A +
Sbjct: 20 APNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKA-FCENSTDA----E 74
Query: 126 NEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID 185
+CGR + ++ + YI D Y+ L VG EGG AT LAT +GVP ++ + +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 186 DE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSK 244
G VYFTD ST Y R Q+ +++ TGR+ KYDP+TK+TT+L + L P G +S
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 245 DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLY 304
D SF + E ++ KYWL G K G E +P P N++ N G FWV+
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253
Query: 305 SHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKA 364
H GR+ +K+ G IL+V+ +
Sbjct: 254 XH----------------------------GRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285
Query: 365 ISEVEEKDGKLWMGSVLMPFVA--VYD 389
+++E DG L++G++ V VYD
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 177
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 21/121 (17%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFT---------DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS 241
+ T D++ + Q + F+ + G++++ D QFPNG++
Sbjct: 131 WITAPAGEVAPADATASMQEKFGSIYCFTTD--GQMIQVDTA----------FQFPNGIA 178
Query: 242 L 242
+
Sbjct: 179 V 179
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 21/121 (17%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFT---------DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS 241
+ T D++ + Q + F+ + G++++ D QFPNG++
Sbjct: 131 WITAPAGEVAPADATASMQEKFGSIYCFTTD--GQMIQVDTA----------FQFPNGIA 178
Query: 242 L 242
+
Sbjct: 179 V 179
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ N+ D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 128
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFP+G+++
Sbjct: 129 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 177
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ ND D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFPNG+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPNGIAV 179
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P G + D+ L++AD GL+ V +G ++EG ++ +D D EGN+
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + ++ + + E G + + T Q + QFP+G+++
Sbjct: 131 WITAPAGEVAPADYTRSM--QEKFGSIYCFT-TDGQMIQVDTAFQFPDGIAV 179
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
ND+ D +G YFTD +S G V P + T +++N+ NG
Sbjct: 138 NDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY------PDNVRTNEKGEF 293
++LS D+ E + RLH+ L + A +P Y PD+ +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246
Query: 294 WVAIH 298
+VA++
Sbjct: 247 YVAMY 251
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
+D+ D +G YFTD +S G V P + T +++N+ NG
Sbjct: 138 DDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY------PDNVRTNEKGEF 293
++LS D+ E + RLH+ L + A +P Y PD+ +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246
Query: 294 WVAIH 298
+VA++
Sbjct: 247 YVAMY 251
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 180 NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239
+D D +G YFTD +S G V P + T +++N+ NG
Sbjct: 138 DDXVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY------PDNVRTNEKGEF 293
++LS D+ E + RLH+ L + A +P Y PD+ +
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246
Query: 294 WVAIH 298
+VA +
Sbjct: 247 YVAXY 251
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P+G + D+ L++AD GL+ V +G ++EG ++ D EGN+
Sbjct: 84 GSPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCAFDYEGNL 143
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + +F + E G + + T Q + Q P G+++
Sbjct: 144 WITAPAGEVAPADFT--ISLREKFGSIYCFT-TDGQMIQVDTAFQCPAGIAV 192
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV 190
G P+G + D+ L++AD GL+ V +G ++EG ++ D EGN+
Sbjct: 71 GIPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCAFDYEGNL 130
Query: 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSL 242
+ T + +F + E G + + T Q + Q P G+++
Sbjct: 131 WITAPAGEVAPADFT--ISLQEKFGSIYCFT-TDGQMIQVDTAFQAPAGIAV 179
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
Query: 161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220
GG S+A EG L ND+ + +G+++F+D + + V +
Sbjct: 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEXELPGRWVFRL 158
Query: 221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL--IGEKAGNLEAFAIL 278
P + +R+ PNGL+ + V G H+Y L GE F +
Sbjct: 159 AP-DGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGD-NATHRYCLNARGETEYQGVHFTVE 216
Query: 279 PGYPDNVRTNEKGEFWVA 296
PG D +R + G W +
Sbjct: 217 PGKTDGLRVDAGGLIWAS 234
>pdb|1YHP|A Chain A, Solution Structure Of Ca2+-Free Ddcad-1
pdb|2B1O|A Chain A, Solution Structure Of Ca2+-Bound Ddcad-1
Length = 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 218 LKYDPTTKQTTVLLRNLQFPNGLSLSK-DKSFFVF 251
KY PTT Q TV+ ++ FP +++++ D + F+F
Sbjct: 172 FKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIF 206
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 341 AVKYSPEGKILQVLEDSKGKVV-KAISEVEEKDGKLWMG 378
A+ YSP ++VLE S+GK V + + E++E+ +L++G
Sbjct: 244 ALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELYLG 282
>pdb|3TAI|A Chain A, Crystal Structure Of Nura
pdb|3TAI|B Chain B, Crystal Structure Of Nura
pdb|3TAL|A Chain A, Crystal Structure Of Nura With Manganese
pdb|3TAL|B Chain B, Crystal Structure Of Nura With Manganese
Length = 471
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 341 AVKYSPEGKILQVLEDSKGKVV-KAISEVEEKDGKLWMG 378
A+ YSP ++VLE S+GK V + + E++E+ +L++G
Sbjct: 244 ALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELYLG 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,463,232
Number of Sequences: 62578
Number of extensions: 543326
Number of successful extensions: 1317
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 31
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)