Query 016318
Match_columns 391
No_of_seqs 265 out of 2154
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 2.1E-62 4.5E-67 447.8 29.8 367 4-391 5-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 6.2E-26 1.3E-30 206.8 25.6 233 71-380 2-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 1.7E-24 3.7E-29 200.4 26.3 269 70-386 26-303 (307)
4 PF03088 Str_synth: Strictosid 99.9 5.3E-23 1.1E-27 153.3 7.8 88 180-267 1-89 (89)
5 COG4257 Vgb Streptogramin lyas 99.8 6.7E-19 1.5E-23 153.9 22.8 238 66-389 59-303 (353)
6 PLN02919 haloacid dehalogenase 99.8 6.6E-17 1.4E-21 173.2 33.2 213 65-302 564-826 (1057)
7 COG4257 Vgb Streptogramin lyas 99.6 7.6E-14 1.6E-18 122.5 23.0 244 58-389 93-345 (353)
8 PLN02919 haloacid dehalogenase 99.6 8.1E-14 1.8E-18 149.6 25.4 211 67-304 622-883 (1057)
9 PF08450 SGL: SMP-30/Gluconola 99.5 2.7E-12 5.9E-17 116.9 21.8 138 134-302 3-157 (246)
10 TIGR02604 Piru_Ver_Nterm putat 99.5 1.4E-11 2.9E-16 118.8 26.0 169 67-263 12-211 (367)
11 PRK11028 6-phosphogluconolacto 99.5 7.4E-11 1.6E-15 112.2 28.9 238 69-359 35-296 (330)
12 PF10282 Lactonase: Lactonase, 99.4 9.7E-11 2.1E-15 112.1 27.3 243 67-360 35-315 (345)
13 KOG4499 Ca2+-binding protein R 99.4 7.2E-12 1.6E-16 107.7 17.2 151 176-339 108-267 (310)
14 PF10282 Lactonase: Lactonase, 99.4 2.9E-10 6.4E-15 108.7 26.6 205 68-300 86-313 (345)
15 PRK11028 6-phosphogluconolacto 99.2 1.5E-08 3.3E-13 96.3 28.8 154 130-305 34-201 (330)
16 COG2706 3-carboxymuconate cycl 99.2 8.9E-09 1.9E-13 94.2 24.7 202 68-300 88-311 (346)
17 COG3386 Gluconolactonase [Carb 99.2 3.7E-09 7.9E-14 98.4 21.1 183 71-300 69-277 (307)
18 KOG4659 Uncharacterized conser 99.2 4.5E-09 9.8E-14 108.6 22.7 203 69-301 407-683 (1899)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.3E-07 7.1E-12 85.0 30.8 171 81-297 2-175 (300)
20 COG2706 3-carboxymuconate cycl 99.1 2.2E-07 4.8E-12 85.2 27.8 195 67-300 38-264 (346)
21 PF03022 MRJP: Major royal jel 99.0 3.3E-08 7.2E-13 91.6 20.4 193 133-383 3-257 (287)
22 COG3391 Uncharacterized conser 99.0 8.1E-08 1.8E-12 93.1 22.8 187 69-299 74-273 (381)
23 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 9E-07 1.9E-11 82.0 28.1 188 69-300 31-228 (300)
24 TIGR02604 Piru_Ver_Nterm putat 98.9 3.7E-08 8E-13 95.1 16.0 142 129-300 12-204 (367)
25 COG3391 Uncharacterized conser 98.9 2.5E-06 5.4E-11 82.7 28.2 233 70-357 32-273 (381)
26 COG3292 Predicted periplasmic 98.9 1E-07 2.2E-12 92.1 16.1 163 53-265 151-317 (671)
27 KOG1214 Nidogen and related ba 98.8 1.3E-07 2.8E-12 94.4 16.4 187 70-301 1026-1218(1289)
28 PF07995 GSDH: Glucose / Sorbo 98.7 2E-06 4.3E-11 81.7 21.1 173 68-262 1-211 (331)
29 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.7E-05 3.7E-10 75.1 25.4 229 90-359 27-322 (352)
30 PF02239 Cytochrom_D1: Cytochr 98.6 1.2E-05 2.6E-10 77.4 23.2 158 71-265 39-202 (369)
31 KOG0318 WD40 repeat stress pro 98.6 2.2E-05 4.7E-10 75.3 23.9 197 65-306 317-514 (603)
32 cd00200 WD40 WD40 domain, foun 98.6 0.00013 2.8E-09 65.8 26.9 182 72-298 55-238 (289)
33 KOG4659 Uncharacterized conser 98.6 3E-05 6.5E-10 81.3 24.4 193 67-303 363-616 (1899)
34 cd00200 WD40 WD40 domain, foun 98.6 0.00018 3.9E-09 64.9 27.8 184 70-298 11-197 (289)
35 KOG1214 Nidogen and related ba 98.5 1.6E-06 3.5E-11 86.8 13.7 178 46-267 1043-1228(1289)
36 PF06977 SdiA-regulated: SdiA- 98.5 2.9E-05 6.4E-10 70.1 20.9 193 68-299 21-241 (248)
37 COG3292 Predicted periplasmic 98.5 2.6E-06 5.7E-11 82.5 14.6 141 131-301 165-311 (671)
38 TIGR03606 non_repeat_PQQ dehyd 98.5 9.7E-06 2.1E-10 79.1 18.8 186 60-263 22-260 (454)
39 PRK04922 tolB translocation pr 98.5 0.00012 2.6E-09 72.4 25.7 136 135-294 252-393 (433)
40 PRK04792 tolB translocation pr 98.4 0.00016 3.4E-09 71.8 25.9 134 135-292 266-405 (448)
41 KOG0291 WD40-repeat-containing 98.4 0.0002 4.3E-09 71.7 25.7 188 68-300 350-542 (893)
42 PF01731 Arylesterase: Arylest 98.4 1.6E-06 3.5E-11 64.4 8.8 83 180-265 1-84 (86)
43 COG2133 Glucose/sorbosone dehy 98.4 0.00036 7.8E-09 66.8 26.7 190 59-259 58-263 (399)
44 PRK05137 tolB translocation pr 98.4 0.00035 7.7E-09 69.1 28.0 139 133-294 204-348 (435)
45 KOG1520 Predicted alkaloid syn 98.4 1.2E-05 2.5E-10 75.2 14.9 215 7-254 11-283 (376)
46 PRK00178 tolB translocation pr 98.4 0.0003 6.6E-09 69.4 26.2 137 135-295 247-389 (430)
47 PRK03629 tolB translocation pr 98.4 0.00059 1.3E-08 67.4 28.0 140 133-295 201-346 (429)
48 KOG0315 G-protein beta subunit 98.4 5E-05 1.1E-09 66.5 17.7 188 70-301 85-280 (311)
49 PRK02889 tolB translocation pr 98.4 0.00037 8E-09 68.8 26.3 137 134-294 243-385 (427)
50 TIGR03032 conserved hypothetic 98.3 0.00019 4.1E-09 65.7 20.9 209 67-301 47-263 (335)
51 KOG4499 Ca2+-binding protein R 98.3 1.7E-05 3.8E-10 68.9 12.9 106 130-252 157-272 (310)
52 PRK05137 tolB translocation pr 98.3 0.00053 1.1E-08 67.9 25.5 176 72-294 205-391 (435)
53 PRK03629 tolB translocation pr 98.3 0.00081 1.8E-08 66.4 26.6 138 135-296 247-390 (429)
54 KOG1446 Histone H3 (Lys4) meth 98.3 0.002 4.4E-08 58.4 26.3 186 69-300 15-209 (311)
55 PRK04922 tolB translocation pr 98.3 0.001 2.2E-08 65.8 27.1 139 134-295 207-351 (433)
56 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00017 3.6E-09 68.5 20.2 115 188-325 13-148 (352)
57 PRK04043 tolB translocation pr 98.2 0.0017 3.6E-08 63.8 27.2 131 136-292 238-380 (419)
58 PRK02889 tolB translocation pr 98.2 0.0016 3.4E-08 64.3 27.0 137 135-294 200-342 (427)
59 TIGR02800 propeller_TolB tol-p 98.2 0.0013 2.9E-08 64.5 26.3 173 73-292 194-377 (417)
60 PRK04792 tolB translocation pr 98.2 0.0023 5E-08 63.6 27.9 138 134-294 221-364 (448)
61 PF05096 Glu_cyclase_2: Glutam 98.2 0.00025 5.3E-09 63.9 18.8 154 69-265 90-261 (264)
62 PF03022 MRJP: Major royal jel 98.2 0.00045 9.8E-09 64.2 21.2 193 72-299 4-255 (287)
63 PRK02888 nitrous-oxide reducta 98.2 0.00088 1.9E-08 67.3 24.2 234 63-306 122-401 (635)
64 COG3204 Uncharacterized protei 98.2 0.0026 5.6E-08 57.7 24.1 193 68-300 85-304 (316)
65 PRK01742 tolB translocation pr 98.2 0.0012 2.6E-08 65.2 24.5 175 72-298 207-390 (429)
66 KOG0291 WD40-repeat-containing 98.1 0.00033 7.1E-09 70.2 19.6 194 69-303 393-606 (893)
67 KOG2055 WD40 repeat protein [G 98.1 0.0004 8.7E-09 65.8 19.2 184 70-300 215-407 (514)
68 KOG1273 WD40 repeat protein [G 98.1 0.0013 2.8E-08 59.7 21.6 190 67-298 64-268 (405)
69 PF06977 SdiA-regulated: SdiA- 98.1 0.0012 2.7E-08 59.6 21.7 197 131-388 22-247 (248)
70 KOG0286 G-protein beta subunit 98.1 0.0042 9E-08 56.0 23.8 216 60-300 47-294 (343)
71 KOG0279 G protein beta subunit 98.1 0.0024 5.3E-08 57.1 21.8 199 59-302 54-255 (315)
72 KOG0318 WD40 repeat stress pro 98.1 0.0056 1.2E-07 59.2 25.7 192 71-299 193-425 (603)
73 PRK00178 tolB translocation pr 98.1 0.0047 1E-07 61.0 26.8 137 134-293 202-344 (430)
74 PRK11138 outer membrane biogen 98.0 0.012 2.6E-07 57.4 28.5 146 81-265 70-223 (394)
75 PF02239 Cytochrom_D1: Cytochr 98.0 0.0053 1.1E-07 59.2 25.1 176 80-299 5-192 (369)
76 KOG0315 G-protein beta subunit 98.0 0.0019 4.1E-08 56.9 19.1 220 82-354 12-233 (311)
77 KOG0266 WD40 repeat-containing 98.0 0.0011 2.4E-08 66.0 20.4 158 65-265 200-364 (456)
78 PF07995 GSDH: Glucose / Sorbo 98.0 0.00018 3.8E-09 68.5 13.8 159 131-300 2-202 (331)
79 PF05096 Glu_cyclase_2: Glutam 97.9 0.0035 7.6E-08 56.6 20.9 107 134-265 48-157 (264)
80 TIGR02800 propeller_TolB tol-p 97.9 0.017 3.7E-07 56.6 27.9 140 135-297 194-339 (417)
81 TIGR03606 non_repeat_PQQ dehyd 97.9 0.00084 1.8E-08 65.8 18.0 162 130-301 29-251 (454)
82 TIGR03300 assembly_YfgL outer 97.9 0.024 5.2E-07 54.9 27.8 143 73-265 60-208 (377)
83 KOG1446 Histone H3 (Lys4) meth 97.9 0.014 3E-07 53.1 23.5 148 131-303 101-256 (311)
84 PTZ00421 coronin; Provisional 97.9 0.027 5.8E-07 56.5 28.3 162 70-265 77-245 (493)
85 PRK11138 outer membrane biogen 97.9 0.012 2.6E-07 57.4 25.2 174 142-385 205-389 (394)
86 PF07433 DUF1513: Protein of u 97.8 0.011 2.4E-07 54.5 22.8 108 131-253 5-117 (305)
87 PF05787 DUF839: Bacterial pro 97.8 0.00032 6.9E-09 70.4 13.5 123 129-252 348-519 (524)
88 PF05787 DUF839: Bacterial pro 97.8 0.0014 3E-08 65.8 17.9 124 174-298 347-521 (524)
89 TIGR03300 assembly_YfgL outer 97.8 0.012 2.6E-07 56.9 24.1 140 80-265 105-259 (377)
90 PRK04043 tolB translocation pr 97.8 0.042 9E-07 54.0 27.6 137 135-296 192-335 (419)
91 PLN00181 protein SPA1-RELATED; 97.8 0.056 1.2E-06 57.8 30.9 161 71-266 486-649 (793)
92 PF07433 DUF1513: Protein of u 97.8 0.0033 7.1E-08 58.0 18.1 162 73-265 55-247 (305)
93 PRK01029 tolB translocation pr 97.8 0.028 6.1E-07 55.4 26.1 96 180-293 284-384 (428)
94 KOG0265 U5 snRNP-specific prot 97.7 0.015 3.3E-07 52.6 21.2 194 73-312 52-249 (338)
95 PF13360 PQQ_2: PQQ-like domai 97.7 0.023 5.1E-07 50.8 23.4 100 142-265 36-140 (238)
96 KOG0316 Conserved WD40 repeat- 97.7 0.014 3.1E-07 51.1 20.2 235 73-356 22-267 (307)
97 KOG0266 WD40 repeat-containing 97.7 0.032 7E-07 55.5 25.8 191 71-303 162-358 (456)
98 PRK01742 tolB translocation pr 97.7 0.027 5.9E-07 55.6 25.1 138 133-296 206-349 (429)
99 PF01436 NHL: NHL repeat; Int 97.7 6.8E-05 1.5E-09 43.2 4.0 28 234-262 1-28 (28)
100 KOG0282 mRNA splicing factor [ 97.7 0.002 4.3E-08 61.6 15.7 191 70-303 260-456 (503)
101 KOG2055 WD40 repeat protein [G 97.7 0.0013 2.7E-08 62.6 14.0 180 70-295 305-498 (514)
102 PF03088 Str_synth: Strictosid 97.7 0.0003 6.4E-09 52.7 8.0 67 135-223 2-87 (89)
103 PF13449 Phytase-like: Esteras 97.6 0.019 4.1E-07 54.5 21.9 131 132-266 86-252 (326)
104 COG4946 Uncharacterized protei 97.6 0.0049 1.1E-07 59.0 17.3 78 216-298 383-461 (668)
105 KOG0293 WD40 repeat-containing 97.6 0.0098 2.1E-07 56.0 18.7 189 74-309 230-425 (519)
106 TIGR03118 PEPCTERM_chp_1 conse 97.6 0.029 6.4E-07 51.3 21.2 227 130-389 22-277 (336)
107 PF13360 PQQ_2: PQQ-like domai 97.6 0.028 6.1E-07 50.2 21.5 174 75-297 32-219 (238)
108 KOG0263 Transcription initiati 97.6 0.0053 1.1E-07 61.9 17.7 223 69-319 379-617 (707)
109 COG3211 PhoX Predicted phospha 97.5 0.00096 2.1E-08 65.4 11.1 118 130-253 416-572 (616)
110 COG3204 Uncharacterized protei 97.5 0.007 1.5E-07 54.9 15.7 164 64-263 124-310 (316)
111 KOG2106 Uncharacterized conser 97.4 0.096 2.1E-06 50.8 23.1 178 71-302 249-430 (626)
112 KOG1274 WD40 repeat protein [G 97.4 0.038 8.3E-07 57.0 21.7 155 69-266 14-169 (933)
113 KOG0289 mRNA splicing factor [ 97.4 0.047 1E-06 51.9 20.6 108 179-310 306-420 (506)
114 KOG0306 WD40-repeat-containing 97.4 0.091 2E-06 53.3 23.6 185 69-305 374-576 (888)
115 KOG0772 Uncharacterized conser 97.4 0.0091 2E-07 57.7 15.9 220 70-325 169-410 (641)
116 KOG0279 G protein beta subunit 97.3 0.11 2.3E-06 46.9 20.9 73 177-267 64-137 (315)
117 KOG1407 WD40 repeat protein [F 97.3 0.1 2.3E-06 46.5 21.5 189 65-299 17-209 (313)
118 KOG0263 Transcription initiati 97.3 0.012 2.6E-07 59.5 16.6 187 73-308 456-648 (707)
119 KOG1539 WD repeat protein [Gen 97.3 0.011 2.3E-07 60.3 16.2 186 70-300 450-638 (910)
120 KOG2106 Uncharacterized conser 97.3 0.052 1.1E-06 52.6 19.8 182 67-300 328-512 (626)
121 COG3823 Glutamine cyclotransfe 97.3 0.004 8.6E-08 53.6 10.8 102 131-252 131-246 (262)
122 KOG0272 U4/U6 small nuclear ri 97.2 0.031 6.7E-07 52.9 17.3 181 70-298 219-407 (459)
123 PF14583 Pectate_lyase22: Olig 97.2 0.21 4.6E-06 47.7 23.2 168 76-267 43-226 (386)
124 PLN00181 protein SPA1-RELATED; 97.2 0.45 9.9E-06 50.9 29.5 188 72-303 536-732 (793)
125 KOG2048 WD40 repeat protein [G 97.1 0.14 3E-06 51.4 21.4 157 73-266 387-549 (691)
126 PTZ00420 coronin; Provisional 97.1 0.23 4.9E-06 50.6 23.8 162 69-265 75-248 (568)
127 KOG0283 WD40 repeat-containing 97.1 0.092 2E-06 53.6 20.5 112 131-267 370-483 (712)
128 COG3211 PhoX Predicted phospha 97.1 0.043 9.3E-07 54.2 17.2 125 174-300 414-575 (616)
129 KOG2096 WD40 repeat protein [G 97.1 0.24 5.2E-06 45.5 21.9 160 70-263 88-256 (420)
130 PTZ00421 coronin; Provisional 97.1 0.14 2.9E-06 51.5 21.2 160 70-266 127-291 (493)
131 PRK02888 nitrous-oxide reducta 97.1 0.18 3.8E-06 51.2 21.7 105 177-299 321-451 (635)
132 PRK01029 tolB translocation pr 97.1 0.38 8.2E-06 47.5 26.1 138 137-293 191-340 (428)
133 PF08662 eIF2A: Eukaryotic tra 97.0 0.14 3E-06 44.7 18.9 114 131-266 60-180 (194)
134 PF13449 Phytase-like: Esteras 97.0 0.044 9.6E-07 52.0 16.9 158 131-299 20-234 (326)
135 COG2133 Glucose/sorbosone dehy 97.0 0.034 7.4E-07 53.5 15.4 49 216-265 343-397 (399)
136 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.25 5.5E-06 44.2 21.2 73 75-168 100-173 (354)
137 KOG0772 Uncharacterized conser 97.0 0.11 2.3E-06 50.7 18.3 201 66-298 212-428 (641)
138 KOG0973 Histone transcription 97.0 0.039 8.5E-07 57.8 16.6 197 73-299 18-239 (942)
139 PF01436 NHL: NHL repeat; Int 96.9 0.0013 2.9E-08 37.8 3.5 21 176-196 1-21 (28)
140 KOG0286 G-protein beta subunit 96.9 0.3 6.5E-06 44.4 20.6 176 73-295 150-331 (343)
141 KOG0278 Serine/threonine kinas 96.9 0.047 1E-06 48.4 14.2 133 143-302 155-290 (334)
142 TIGR03032 conserved hypothetic 96.9 0.037 8.1E-07 51.0 13.9 48 187-253 212-259 (335)
143 smart00135 LY Low-density lipo 96.7 0.0056 1.2E-07 38.7 5.7 38 230-267 4-41 (43)
144 KOG0293 WD40 repeat-containing 96.7 0.2 4.2E-06 47.6 17.6 160 65-266 266-426 (519)
145 KOG1274 WD40 repeat protein [G 96.7 0.096 2.1E-06 54.2 16.8 176 79-305 65-258 (933)
146 KOG0294 WD40 repeat-containing 96.6 0.54 1.2E-05 43.2 22.1 178 72-299 47-228 (362)
147 KOG0275 Conserved WD40 repeat- 96.6 0.095 2.1E-06 48.0 14.4 161 66-265 211-378 (508)
148 cd00216 PQQ_DH Dehydrogenases 96.6 0.92 2E-05 45.6 26.3 44 337-382 414-458 (488)
149 KOG0282 mRNA splicing factor [ 96.6 0.082 1.8E-06 50.9 14.5 146 63-256 209-363 (503)
150 KOG0289 mRNA splicing factor [ 96.6 0.079 1.7E-06 50.4 14.2 148 71-262 350-502 (506)
151 KOG0319 WD40-repeat-containing 96.6 0.11 2.3E-06 52.7 15.6 201 60-306 16-219 (775)
152 COG4946 Uncharacterized protei 96.6 0.091 2E-06 50.6 14.5 109 127-253 398-507 (668)
153 KOG2139 WD40 repeat protein [G 96.5 0.79 1.7E-05 43.0 23.4 146 134-302 199-368 (445)
154 KOG1539 WD repeat protein [Gen 96.4 0.059 1.3E-06 55.2 13.1 150 72-263 497-646 (910)
155 KOG0771 Prolactin regulatory e 96.4 0.13 2.9E-06 48.6 14.2 186 72-299 148-344 (398)
156 COG3490 Uncharacterized protei 96.4 0.78 1.7E-05 41.8 19.6 191 154-364 93-317 (366)
157 PF02333 Phytase: Phytase; In 96.3 0.59 1.3E-05 44.9 18.8 138 142-299 67-228 (381)
158 PF06433 Me-amine-dh_H: Methyl 96.3 0.71 1.5E-05 43.4 18.7 111 142-266 2-127 (342)
159 COG1520 FOG: WD40-like repeat 96.3 1.1 2.4E-05 43.2 21.6 147 76-265 65-217 (370)
160 KOG0643 Translation initiation 96.3 0.83 1.8E-05 41.1 19.3 188 74-303 16-214 (327)
161 KOG0272 U4/U6 small nuclear ri 96.2 0.15 3.2E-06 48.4 13.6 193 66-302 259-453 (459)
162 KOG0641 WD40 repeat protein [G 96.2 0.81 1.8E-05 40.1 21.9 214 69-296 33-290 (350)
163 PF08662 eIF2A: Eukaryotic tra 96.1 0.45 9.8E-06 41.4 15.9 121 153-299 40-163 (194)
164 PRK13684 Ycf48-like protein; P 96.1 1.4 2.9E-05 42.0 28.0 183 71-299 48-234 (334)
165 KOG0299 U3 snoRNP-associated p 96.1 0.93 2E-05 43.7 18.2 69 72-160 206-274 (479)
166 COG3490 Uncharacterized protei 96.0 0.71 1.5E-05 42.1 16.4 107 176-300 225-340 (366)
167 KOG0640 mRNA cleavage stimulat 96.0 0.12 2.5E-06 47.3 11.3 102 178-302 174-284 (430)
168 KOG1407 WD40 repeat protein [F 96.0 1.1 2.5E-05 40.1 17.8 183 131-353 21-206 (313)
169 KOG4649 PQQ (pyrrolo-quinoline 96.0 0.3 6.6E-06 43.8 13.7 107 138-267 101-219 (354)
170 KOG0271 Notchless-like WD40 re 95.9 0.49 1.1E-05 44.6 15.5 131 143-299 336-471 (480)
171 cd00216 PQQ_DH Dehydrogenases 95.9 1.3 2.8E-05 44.5 20.1 140 145-300 304-458 (488)
172 KOG0292 Vesicle coat complex C 95.9 1.4 3E-05 46.1 19.7 156 70-268 11-168 (1202)
173 KOG0639 Transducin-like enhanc 95.9 1.4 3E-05 43.1 18.6 114 133-266 468-582 (705)
174 KOG1036 Mitotic spindle checkp 95.9 1.4 3.1E-05 40.4 19.8 148 70-266 15-164 (323)
175 PF05694 SBP56: 56kDa selenium 95.8 1.1 2.4E-05 43.5 17.9 171 130-302 129-335 (461)
176 KOG0271 Notchless-like WD40 re 95.8 0.47 1E-05 44.7 14.8 151 71-264 118-275 (480)
177 KOG0646 WD40 repeat protein [G 95.8 0.71 1.5E-05 44.5 16.3 152 73-266 86-248 (476)
178 PF00930 DPPIV_N: Dipeptidyl p 95.8 0.87 1.9E-05 43.6 17.7 146 135-300 188-348 (353)
179 PTZ00420 coronin; Provisional 95.8 2.7 5.9E-05 42.9 26.5 118 130-266 74-198 (568)
180 PF14870 PSII_BNR: Photosynthe 95.7 1.5 3.3E-05 40.9 18.2 111 130-262 186-301 (302)
181 KOG0278 Serine/threonine kinas 95.7 1.1 2.4E-05 40.0 15.8 100 131-258 185-290 (334)
182 PRK13684 Ycf48-like protein; P 95.7 2.1 4.5E-05 40.8 24.2 140 132-299 133-279 (334)
183 KOG0639 Transducin-like enhanc 95.6 0.38 8.2E-06 46.8 13.7 146 126-300 503-654 (705)
184 KOG0640 mRNA cleavage stimulat 95.6 0.18 3.8E-06 46.2 10.9 153 72-263 176-332 (430)
185 KOG0283 WD40 repeat-containing 95.4 0.96 2.1E-05 46.5 16.4 187 73-308 374-575 (712)
186 PF14583 Pectate_lyase22: Olig 95.4 0.24 5.2E-06 47.4 11.6 104 177-299 36-144 (386)
187 KOG0273 Beta-transducin family 95.3 3 6.4E-05 40.5 24.1 145 69-260 236-384 (524)
188 KOG2110 Uncharacterized conser 95.2 2.1 4.5E-05 40.3 16.6 113 132-266 128-249 (391)
189 KOG0646 WD40 repeat protein [G 95.1 2.7 5.9E-05 40.6 17.6 140 133-300 84-239 (476)
190 PF14870 PSII_BNR: Photosynthe 95.0 3.1 6.8E-05 38.9 21.3 141 131-300 104-253 (302)
191 KOG0268 Sof1-like rRNA process 95.0 0.69 1.5E-05 43.3 12.9 189 66-305 64-255 (433)
192 KOG4378 Nuclear protein COP1 [ 94.9 2.6 5.7E-05 41.2 17.0 86 214-302 186-273 (673)
193 KOG0647 mRNA export protein (c 94.8 3.3 7.2E-05 38.0 16.4 81 72-170 31-112 (347)
194 PF14517 Tachylectin: Tachylec 94.7 1.2 2.6E-05 39.5 13.3 184 33-263 6-204 (229)
195 PF01731 Arylesterase: Arylest 94.7 0.16 3.6E-06 37.8 6.7 68 69-159 6-83 (86)
196 KOG0645 WD40 repeat protein [G 94.6 3.4 7.5E-05 37.4 24.6 217 130-381 14-242 (312)
197 PF02333 Phytase: Phytase; In 94.6 4.7 0.0001 38.8 20.4 96 154-266 131-238 (381)
198 COG0823 TolB Periplasmic compo 94.5 3.1 6.8E-05 40.9 17.3 108 137-264 244-357 (425)
199 KOG2048 WD40 repeat protein [G 94.5 6.3 0.00014 40.0 22.9 185 69-297 70-264 (691)
200 KOG1273 WD40 repeat protein [G 94.5 3.5 7.6E-05 38.1 15.9 240 71-361 26-295 (405)
201 KOG0310 Conserved WD40 repeat- 94.5 5.2 0.00011 39.0 20.1 184 69-298 69-257 (487)
202 KOG4378 Nuclear protein COP1 [ 94.4 2 4.4E-05 42.0 15.0 112 135-267 169-282 (673)
203 KOG0643 Translation initiation 94.4 3.7 8.1E-05 37.1 17.8 146 131-299 148-307 (327)
204 KOG2110 Uncharacterized conser 94.4 0.96 2.1E-05 42.4 12.4 60 72-153 177-240 (391)
205 KOG0288 WD40 repeat protein Ti 94.4 1.5 3.2E-05 41.9 13.7 106 130-253 341-450 (459)
206 PF14339 DUF4394: Domain of un 94.3 1.6 3.5E-05 38.9 13.2 86 131-234 27-114 (236)
207 KOG0973 Histone transcription 94.2 1.5 3.3E-05 46.4 14.8 156 71-256 72-241 (942)
208 PLN00033 photosystem II stabil 94.2 4.5 9.6E-05 39.5 17.3 110 132-262 282-396 (398)
209 KOG4328 WD40 protein [Function 94.0 6.3 0.00014 38.2 18.5 105 133-257 237-345 (498)
210 PLN00033 photosystem II stabil 94.0 6.6 0.00014 38.3 24.5 98 181-299 243-347 (398)
211 KOG0310 Conserved WD40 repeat- 94.0 6.6 0.00014 38.3 18.9 140 133-300 156-301 (487)
212 KOG0288 WD40 repeat protein Ti 93.9 2.5 5.4E-05 40.3 14.3 191 66-306 217-414 (459)
213 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.9 8.2 0.00018 39.2 23.2 123 79-228 69-194 (527)
214 KOG2111 Uncharacterized conser 93.8 5.5 0.00012 36.9 19.6 72 179-268 184-259 (346)
215 PF02897 Peptidase_S9_N: Proly 93.8 7.2 0.00016 38.1 19.1 119 135-266 128-261 (414)
216 PF00058 Ldl_recept_b: Low-den 93.8 0.29 6.2E-06 31.0 5.7 40 188-244 1-42 (42)
217 KOG0284 Polyadenylation factor 93.8 1.2 2.5E-05 42.4 11.8 178 72-299 100-284 (464)
218 KOG4441 Proteins containing BT 93.8 5.1 0.00011 41.1 17.7 112 134-265 374-499 (571)
219 KOG0641 WD40 repeat protein [G 93.8 4.4 9.6E-05 35.6 16.2 76 177-270 232-308 (350)
220 KOG0303 Actin-binding protein 93.7 2 4.2E-05 40.9 13.1 118 132-267 175-296 (472)
221 KOG0296 Angio-associated migra 93.7 6.3 0.00014 37.1 23.1 80 67-169 147-229 (399)
222 KOG0313 Microtubule binding pr 93.7 2.5 5.5E-05 39.9 13.7 178 66-266 191-377 (423)
223 PF14269 Arylsulfotran_2: Aryl 93.6 2.4 5.2E-05 39.6 14.0 38 177-231 144-181 (299)
224 KOG2315 Predicted translation 93.6 4 8.6E-05 40.5 15.5 121 215-356 251-374 (566)
225 COG5276 Uncharacterized conser 93.6 5.9 0.00013 36.5 17.2 109 134-268 90-202 (370)
226 PF05694 SBP56: 56kDa selenium 93.5 6.5 0.00014 38.4 16.6 63 236-298 313-393 (461)
227 PRK13616 lipoprotein LpqB; Pro 93.4 11 0.00023 39.0 20.4 71 178-268 449-530 (591)
228 COG0823 TolB Periplasmic compo 93.4 1.5 3.2E-05 43.2 12.7 83 213-298 260-344 (425)
229 KOG0299 U3 snoRNP-associated p 93.4 8.1 0.00018 37.5 17.8 116 132-265 144-274 (479)
230 KOG1009 Chromatin assembly com 93.3 7.8 0.00017 37.0 21.0 99 131-248 66-179 (434)
231 KOG0305 Anaphase promoting com 93.3 9.6 0.00021 37.9 22.1 231 69-356 218-451 (484)
232 KOG0307 Vesicle coat complex C 93.1 0.93 2E-05 48.3 11.1 211 82-334 82-305 (1049)
233 KOG0645 WD40 repeat protein [G 92.9 7 0.00015 35.4 20.9 155 71-265 17-180 (312)
234 KOG1036 Mitotic spindle checkp 92.8 7.8 0.00017 35.7 19.2 109 133-265 16-124 (323)
235 KOG2139 WD40 repeat protein [G 92.8 8.8 0.00019 36.3 16.4 97 177-292 196-293 (445)
236 KOG0292 Vesicle coat complex C 92.7 16 0.00034 38.8 22.9 128 66-253 248-384 (1202)
237 COG4247 Phy 3-phytase (myo-ino 92.6 7.5 0.00016 35.0 23.1 95 154-265 128-234 (364)
238 PF07494 Reg_prop: Two compone 92.6 0.17 3.7E-06 27.7 2.9 17 282-298 7-23 (24)
239 PHA02713 hypothetical protein; 92.6 7 0.00015 40.0 16.8 146 142-297 351-519 (557)
240 PF14517 Tachylectin: Tachylec 92.6 1.3 2.7E-05 39.4 9.7 134 53-225 65-208 (229)
241 KOG2321 WD40 repeat protein [G 92.4 3.9 8.5E-05 40.8 13.5 160 73-264 180-342 (703)
242 PF06433 Me-amine-dh_H: Methyl 92.4 10 0.00022 35.9 25.7 208 131-365 95-328 (342)
243 PRK13616 lipoprotein LpqB; Pro 92.3 15 0.00033 37.8 22.8 109 180-298 400-515 (591)
244 KOG2919 Guanine nucleotide-bin 92.1 4.4 9.5E-05 37.7 12.7 50 215-266 133-188 (406)
245 KOG1272 WD40-repeat-containing 92.1 2.9 6.2E-05 40.6 12.0 99 206-309 254-364 (545)
246 KOG0301 Phospholipase A2-activ 91.8 6.7 0.00015 40.0 14.6 144 70-263 103-246 (745)
247 PHA03098 kelch-like protein; P 91.7 11 0.00023 38.4 16.9 77 142-231 389-472 (534)
248 KOG0771 Prolactin regulatory e 91.7 4.9 0.00011 38.4 12.9 73 176-266 281-355 (398)
249 KOG1963 WD40 repeat protein [G 91.6 5.1 0.00011 41.7 14.0 154 73-266 210-376 (792)
250 PF07494 Reg_prop: Two compone 91.5 0.27 5.9E-06 26.9 2.8 20 176-195 4-23 (24)
251 KOG0285 Pleiotropic regulator 91.4 13 0.00028 35.1 18.8 158 65-265 148-307 (460)
252 KOG2321 WD40 repeat protein [G 91.4 17 0.00037 36.5 19.5 175 67-266 47-259 (703)
253 KOG0275 Conserved WD40 repeat- 91.2 3.8 8.3E-05 37.9 11.3 147 73-263 353-506 (508)
254 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.2 2.5E-05 27.6 5.9 38 189-243 5-42 (42)
255 PHA02713 hypothetical protein; 90.9 21 0.00045 36.6 22.6 74 142-231 303-383 (557)
256 KOG0281 Beta-TrCP (transducin 90.9 2.9 6.3E-05 39.1 10.4 136 128-289 275-410 (499)
257 KOG0301 Phospholipase A2-activ 90.8 21 0.00046 36.6 16.9 184 68-304 53-244 (745)
258 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.6 22 0.00047 36.2 22.4 81 213-299 439-523 (527)
259 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.3 2.8E-05 27.5 5.8 42 244-288 1-42 (42)
260 PF08553 VID27: VID27 cytoplas 90.5 3 6.6E-05 44.0 11.5 100 144-263 544-645 (794)
261 KOG2919 Guanine nucleotide-bin 90.4 15 0.00033 34.2 15.8 139 142-300 122-272 (406)
262 KOG3881 Uncharacterized conser 90.3 5.4 0.00012 37.9 11.7 138 70-247 204-344 (412)
263 PF08553 VID27: VID27 cytoplas 90.3 5.3 0.00011 42.3 13.0 141 132-300 482-639 (794)
264 KOG0284 Polyadenylation factor 90.0 6.1 0.00013 37.8 11.8 154 70-265 182-337 (464)
265 PF14269 Arylsulfotran_2: Aryl 89.7 8.5 0.00018 36.0 12.9 124 134-266 147-290 (299)
266 COG1520 FOG: WD40-like repeat 89.6 20 0.00044 34.4 24.2 110 79-227 111-221 (370)
267 KOG0273 Beta-transducin family 89.1 24 0.00051 34.6 20.0 143 131-300 236-380 (524)
268 KOG1538 Uncharacterized conser 89.1 26 0.00056 36.0 15.9 180 71-271 56-258 (1081)
269 KOG0316 Conserved WD40 repeat- 89.0 15 0.00034 32.7 12.8 110 131-264 18-130 (307)
270 TIGR03074 PQQ_membr_DH membran 88.9 36 0.00077 36.3 20.1 23 142-164 194-216 (764)
271 KOG0264 Nucleosome remodeling 88.7 11 0.00024 36.3 12.8 110 135-265 232-347 (422)
272 KOG0319 WD40-repeat-containing 88.7 32 0.0007 35.6 20.3 179 83-302 296-486 (775)
273 COG3823 Glutamine cyclotransfe 88.6 5.9 0.00013 34.6 9.9 53 142-194 185-247 (262)
274 KOG4441 Proteins containing BT 88.6 32 0.00069 35.4 19.7 111 134-264 326-451 (571)
275 KOG0647 mRNA export protein (c 88.4 18 0.00038 33.4 13.2 59 234-295 251-309 (347)
276 KOG0642 Cell-cycle nuclear pro 88.0 9 0.00019 38.1 11.9 98 54-163 328-429 (577)
277 PHA02790 Kelch-like protein; P 87.9 18 0.00039 36.3 14.7 84 142-252 362-452 (480)
278 KOG0306 WD40-repeat-containing 87.8 19 0.00042 37.3 14.3 148 71-263 511-662 (888)
279 smart00135 LY Low-density lipo 87.2 1.9 4E-05 26.7 4.8 33 130-162 8-41 (43)
280 KOG0296 Angio-associated migra 87.1 28 0.0006 33.0 20.5 147 73-265 69-220 (399)
281 KOG1408 WD40 repeat protein [F 87.1 24 0.00052 36.5 14.4 99 178-295 598-709 (1080)
282 PF00058 Ldl_recept_b: Low-den 86.9 2 4.3E-05 27.1 4.7 40 248-289 2-42 (42)
283 KOG1215 Low-density lipoprotei 86.7 35 0.00076 37.1 17.1 143 131-295 480-626 (877)
284 KOG3914 WD repeat protein WDR4 86.4 8.3 0.00018 36.7 10.3 114 130-266 62-182 (390)
285 TIGR03118 PEPCTERM_chp_1 conse 86.3 29 0.00062 32.4 23.5 31 66-97 20-51 (336)
286 KOG0285 Pleiotropic regulator 86.2 31 0.00067 32.7 16.1 156 65-265 232-389 (460)
287 KOG0308 Conserved WD40 repeat- 86.1 15 0.00033 37.3 12.4 158 70-264 75-242 (735)
288 KOG0308 Conserved WD40 repeat- 86.0 43 0.00094 34.2 15.8 159 73-267 122-287 (735)
289 PHA03098 kelch-like protein; P 85.9 43 0.00093 34.0 20.6 75 142-231 342-422 (534)
290 PF04053 Coatomer_WDAD: Coatom 85.6 40 0.00087 33.4 17.5 141 70-265 34-175 (443)
291 KOG0322 G-protein beta subunit 85.4 12 0.00026 33.9 10.2 151 83-263 168-321 (323)
292 KOG3881 Uncharacterized conser 85.1 6.6 0.00014 37.3 9.0 88 212-301 223-312 (412)
293 PF00930 DPPIV_N: Dipeptidyl p 84.7 17 0.00036 34.8 12.2 91 144-252 250-345 (353)
294 PF06739 SBBP: Beta-propeller 84.3 0.81 1.7E-05 28.2 1.9 20 177-196 13-32 (38)
295 KOG4227 WD40 repeat protein [G 84.1 41 0.00088 32.2 18.7 194 72-300 60-265 (609)
296 PHA02790 Kelch-like protein; P 83.4 52 0.0011 33.0 19.6 100 142-264 318-422 (480)
297 KOG0268 Sof1-like rRNA process 83.0 6.8 0.00015 37.0 8.0 151 72-263 191-345 (433)
298 KOG0305 Anaphase promoting com 82.3 57 0.0012 32.6 15.2 172 79-296 269-448 (484)
299 KOG0265 U5 snRNP-specific prot 81.6 32 0.00069 31.8 11.6 117 128-265 45-163 (338)
300 KOG0294 WD40 repeat-containing 81.2 47 0.001 31.0 15.5 86 83-194 100-187 (362)
301 KOG0649 WD40 repeat protein [G 80.5 43 0.00094 30.1 17.2 98 133-252 117-224 (325)
302 KOG0276 Vesicle coat complex C 79.6 77 0.0017 32.4 20.2 151 64-261 223-378 (794)
303 PF00400 WD40: WD domain, G-be 79.5 5.5 0.00012 23.9 4.5 29 68-96 11-39 (39)
304 KOG4328 WD40 protein [Function 78.9 15 0.00033 35.7 9.1 110 135-264 284-398 (498)
305 COG4247 Phy 3-phytase (myo-ino 78.2 53 0.0012 29.8 18.5 83 216-299 127-225 (364)
306 KOG2395 Protein involved in va 77.2 27 0.00059 34.9 10.4 98 146-264 398-499 (644)
307 KOG0295 WD40 repeat-containing 77.1 69 0.0015 30.5 14.2 161 66-266 191-365 (406)
308 TIGR03548 mutarot_permut cycli 77.0 65 0.0014 30.2 14.2 90 142-231 171-287 (323)
309 KOG0269 WD40 repeat-containing 77.0 37 0.00079 35.4 11.6 94 213-308 108-206 (839)
310 KOG1538 Uncharacterized conser 76.9 97 0.0021 32.1 14.9 153 72-265 136-293 (1081)
311 smart00564 PQQ beta-propeller 76.4 4.8 0.0001 23.3 3.4 25 186-228 5-29 (33)
312 PF06739 SBBP: Beta-propeller 76.2 3.1 6.7E-05 25.6 2.6 22 69-90 13-34 (38)
313 KOG0295 WD40 repeat-containing 75.9 74 0.0016 30.3 13.9 128 152-306 130-262 (406)
314 KOG1963 WD40 repeat protein [G 75.7 1.1E+02 0.0025 32.3 21.0 96 178-292 253-358 (792)
315 KOG0650 WD40 repeat nucleolar 74.9 1E+02 0.0022 31.4 17.0 95 203-304 534-633 (733)
316 KOG2096 WD40 repeat protein [G 74.2 29 0.00064 32.4 9.2 130 51-194 259-391 (420)
317 PF09910 DUF2139: Uncharacteri 74.0 76 0.0016 29.5 22.2 41 130-170 105-149 (339)
318 KOG4547 WD40 repeat-containing 73.9 1E+02 0.0022 31.0 18.1 81 142-245 114-195 (541)
319 KOG0313 Microtubule binding pr 73.4 88 0.0019 30.0 14.0 108 63-195 255-365 (423)
320 KOG1215 Low-density lipoprotei 73.0 1.5E+02 0.0032 32.4 16.8 143 133-298 439-586 (877)
321 KOG1408 WD40 repeat protein [F 72.7 45 0.00097 34.7 10.9 113 134-265 600-713 (1080)
322 smart00284 OLF Olfactomedin-li 72.3 77 0.0017 28.8 11.5 56 137-194 181-242 (255)
323 KOG3914 WD repeat protein WDR4 72.0 96 0.0021 29.8 12.9 152 70-265 64-223 (390)
324 TIGR03548 mutarot_permut cycli 71.9 88 0.0019 29.3 18.4 74 142-231 123-202 (323)
325 KOG0274 Cdc4 and related F-box 71.7 1.2E+02 0.0025 31.1 13.9 142 79-265 340-482 (537)
326 COG5276 Uncharacterized conser 71.4 88 0.0019 29.1 17.1 142 131-299 172-319 (370)
327 KOG2395 Protein involved in va 71.1 48 0.001 33.3 10.4 147 131-300 333-492 (644)
328 KOG0918 Selenium-binding prote 70.0 42 0.0009 32.4 9.5 30 133-162 314-344 (476)
329 PRK14131 N-acetylneuraminic ac 69.7 1.1E+02 0.0024 29.5 15.1 51 142-195 84-147 (376)
330 KOG0303 Actin-binding protein 68.0 1.2E+02 0.0026 29.3 14.2 51 213-264 152-202 (472)
331 TIGR03074 PQQ_membr_DH membran 67.6 85 0.0018 33.6 12.4 24 142-165 260-283 (764)
332 KOG0281 Beta-TrCP (transducin 66.4 43 0.00093 31.6 8.6 177 70-303 199-382 (499)
333 smart00284 OLF Olfactomedin-li 65.6 1.1E+02 0.0023 27.9 19.0 165 67-264 73-251 (255)
334 PF08309 LVIVD: LVIVD repeat; 65.3 19 0.00041 22.7 4.4 27 133-161 4-30 (42)
335 COG3055 Uncharacterized protei 64.6 1.3E+02 0.0029 28.6 12.0 162 80-266 46-254 (381)
336 COG5167 VID27 Protein involved 64.6 48 0.001 33.1 9.0 49 215-265 583-632 (776)
337 PF13570 PQQ_3: PQQ-like domai 64.1 11 0.00025 23.0 3.3 24 73-98 16-39 (40)
338 PF11768 DUF3312: Protein of u 63.1 47 0.001 33.5 8.8 72 69-164 260-333 (545)
339 KOG4227 WD40 repeat protein [G 62.9 1.5E+02 0.0032 28.6 13.9 118 130-266 56-180 (609)
340 PF02897 Peptidase_S9_N: Proly 62.8 1.5E+02 0.0033 28.7 18.8 79 215-295 150-242 (414)
341 COG1770 PtrB Protease II [Amin 61.9 2E+02 0.0044 29.9 14.0 88 173-276 125-219 (682)
342 KOG1445 Tumor-specific antigen 61.5 61 0.0013 33.2 9.2 120 130-265 720-844 (1012)
343 KOG0269 WD40 repeat-containing 60.4 1E+02 0.0022 32.4 10.7 147 81-269 101-254 (839)
344 PF14339 DUF4394: Domain of un 59.2 1.4E+02 0.0029 26.9 16.9 75 73-165 31-108 (236)
345 PF05935 Arylsulfotrans: Aryls 59.0 2E+02 0.0044 28.8 15.8 88 142-253 113-208 (477)
346 KOG1009 Chromatin assembly com 58.5 1.7E+02 0.0036 28.4 11.1 104 177-301 66-187 (434)
347 PF01011 PQQ: PQQ enzyme repea 56.6 13 0.00028 22.6 2.5 22 143-164 1-22 (38)
348 PF15416 DUF4623: Domain of un 56.4 1.6E+02 0.0035 27.9 10.4 57 244-300 141-203 (442)
349 KOG4547 WD40 repeat-containing 56.0 2.3E+02 0.005 28.6 18.0 109 146-282 73-184 (541)
350 KOG2315 Predicted translation 56.0 2.3E+02 0.005 28.6 13.0 70 180-267 315-392 (566)
351 KOG1310 WD40 repeat protein [G 54.9 1.2E+02 0.0026 30.7 9.8 69 73-160 55-125 (758)
352 COG5167 VID27 Protein involved 54.6 2.4E+02 0.0053 28.4 15.4 143 131-300 467-624 (776)
353 KOG0918 Selenium-binding prote 54.5 32 0.00069 33.2 5.8 31 238-268 315-345 (476)
354 PF11768 DUF3312: Protein of u 53.9 83 0.0018 31.8 8.8 50 214-265 280-329 (545)
355 KOG0264 Nucleosome remodeling 53.9 1.7E+02 0.0037 28.5 10.5 152 135-308 182-346 (422)
356 KOG0650 WD40 repeat nucleolar 53.5 86 0.0019 32.0 8.7 71 129-223 565-637 (733)
357 PF11134 Phage_stabilise: Phag 53.3 1.6E+02 0.0036 28.9 10.4 69 216-286 110-186 (469)
358 KOG1063 RNA polymerase II elon 52.5 2E+02 0.0042 30.0 11.1 74 178-264 527-601 (764)
359 PF02191 OLF: Olfactomedin-lik 51.9 1.9E+02 0.004 26.3 11.4 56 137-194 176-237 (250)
360 PF00400 WD40: WD domain, G-be 51.8 48 0.001 19.5 5.3 30 232-262 9-38 (39)
361 KOG1240 Protein kinase contain 51.7 3.8E+02 0.0082 30.2 13.6 51 214-265 1172-1225(1431)
362 PF10647 Gmad1: Lipoprotein Lp 50.1 2E+02 0.0042 26.0 20.0 113 137-267 72-199 (253)
363 PLN02193 nitrile-specifier pro 49.6 2.8E+02 0.0061 27.7 17.8 76 142-231 278-359 (470)
364 TIGR03803 Gloeo_Verruco Gloeo_ 48.2 54 0.0012 19.6 4.1 28 187-226 1-28 (34)
365 KOG2394 WD40 protein DMR-N9 [G 47.3 67 0.0014 32.2 6.9 92 70-186 292-384 (636)
366 PF02191 OLF: Olfactomedin-lik 46.9 2.2E+02 0.0048 25.8 19.2 165 66-264 67-246 (250)
367 PLN03215 ascorbic acid mannose 45.6 2.8E+02 0.0061 26.8 10.8 25 72-98 203-227 (373)
368 PF09910 DUF2139: Uncharacteri 43.0 1.7E+02 0.0036 27.4 8.3 75 145-233 71-149 (339)
369 KOG2394 WD40 protein DMR-N9 [G 41.8 87 0.0019 31.5 6.7 68 178-263 292-360 (636)
370 PF09826 Beta_propel: Beta pro 41.5 4E+02 0.0087 27.1 24.6 92 258-382 249-345 (521)
371 PF03178 CPSF_A: CPSF A subuni 41.4 3E+02 0.0064 25.6 11.9 58 133-195 132-192 (321)
372 PF07250 Glyoxal_oxid_N: Glyox 41.1 2.7E+02 0.0059 25.1 14.7 127 154-300 48-190 (243)
373 KOG1063 RNA polymerase II elon 40.6 4.5E+02 0.0098 27.5 11.8 110 66-195 265-380 (764)
374 TIGR02608 delta_60_rpt delta-6 39.1 51 0.0011 22.2 3.4 27 72-98 4-37 (55)
375 PF13964 Kelch_6: Kelch motif 38.9 59 0.0013 20.8 3.8 35 186-231 10-44 (50)
376 COG4993 Gcd Glucose dehydrogen 38.6 4.8E+02 0.01 27.2 17.9 42 57-98 184-232 (773)
377 TIGR03547 muta_rot_YjhT mutatr 38.5 3.4E+02 0.0074 25.5 15.3 51 142-195 63-126 (346)
378 KOG1524 WD40 repeat-containing 37.8 4.5E+02 0.0098 26.7 16.5 178 70-298 65-246 (737)
379 PLN02153 epithiospecifier prot 37.7 3.5E+02 0.0077 25.4 16.8 84 142-231 85-175 (341)
380 PF14977 FAM194: FAM194 protei 36.9 2.9E+02 0.0064 24.3 11.2 18 283-300 69-86 (208)
381 PF05935 Arylsulfotrans: Aryls 36.4 4.5E+02 0.0099 26.3 17.4 121 136-265 153-301 (477)
382 PRK10115 protease 2; Provision 36.1 5.5E+02 0.012 27.2 19.5 59 215-276 153-218 (686)
383 KOG3621 WD40 repeat-containing 35.8 1.2E+02 0.0027 31.4 7.0 31 130-160 124-154 (726)
384 smart00320 WD40 WD40 repeats. 35.8 65 0.0014 17.3 3.4 25 71-95 15-39 (40)
385 KOG1188 WD40 repeat protein [G 35.1 4E+02 0.0087 25.3 11.6 147 207-391 42-196 (376)
386 PLN02153 epithiospecifier prot 34.0 4E+02 0.0088 25.0 13.8 77 142-231 32-117 (341)
387 KOG0300 WD40 repeat-containing 34.0 4.1E+02 0.0088 25.0 12.0 24 70-93 192-215 (481)
388 KOG0321 WD40 repeat-containing 33.6 5.6E+02 0.012 26.6 11.9 32 135-166 276-307 (720)
389 KOG0267 Microtubule severing p 33.5 2E+02 0.0044 30.1 8.0 30 69-98 71-100 (825)
390 KOG0321 WD40 repeat-containing 33.2 2.2E+02 0.0049 29.3 8.1 28 240-268 106-133 (720)
391 KOG1272 WD40-repeat-containing 33.1 4.3E+02 0.0093 26.3 9.7 174 132-312 131-326 (545)
392 KOG0302 Ribosome Assembly prot 33.1 4.6E+02 0.0099 25.4 12.9 158 133-309 214-378 (440)
393 COG4880 Secreted protein conta 33.0 4.9E+02 0.011 25.7 11.4 40 340-382 407-447 (603)
394 KOG0322 G-protein beta subunit 32.9 74 0.0016 29.0 4.4 30 69-98 252-281 (323)
395 KOG1310 WD40 repeat protein [G 32.4 3.7E+02 0.0081 27.4 9.3 73 177-266 51-126 (758)
396 PF12275 DUF3616: Protein of u 31.2 1.3E+02 0.0028 28.5 6.1 62 237-300 2-78 (330)
397 KOG1034 Transcriptional repres 30.8 4.7E+02 0.01 24.8 11.0 107 137-265 98-211 (385)
398 PF09826 Beta_propel: Beta pro 30.5 6E+02 0.013 25.9 15.1 120 154-287 250-377 (521)
399 KOG0267 Microtubule severing p 30.1 2E+02 0.0043 30.2 7.3 83 214-300 91-174 (825)
400 KOG1034 Transcriptional repres 29.6 4.9E+02 0.011 24.7 11.5 92 215-308 115-210 (385)
401 KOG4497 Uncharacterized conser 28.8 5.1E+02 0.011 24.6 11.1 40 215-254 114-153 (447)
402 PF07676 PD40: WD40-like Beta 28.5 1.3E+02 0.0029 17.8 4.7 18 238-255 12-29 (39)
403 COG4993 Gcd Glucose dehydrogen 28.4 2.1E+02 0.0046 29.5 7.1 24 142-165 214-237 (773)
404 KOG1445 Tumor-specific antigen 28.1 7.1E+02 0.015 26.0 13.6 89 53-162 113-202 (1012)
405 KOG3567 Peptidylglycine alpha- 28.0 1E+02 0.0022 30.5 4.7 23 174-196 464-486 (501)
406 PF05567 Neisseria_PilC: Neiss 27.8 1.8E+02 0.004 27.6 6.5 53 154-224 183-240 (335)
407 TIGR03547 muta_rot_YjhT mutatr 27.7 5.1E+02 0.011 24.3 14.0 101 142-252 17-124 (346)
408 PF04841 Vps16_N: Vps16, N-ter 27.6 5.9E+02 0.013 24.9 26.4 32 131-163 81-112 (410)
409 KOG2114 Vacuolar assembly/sort 27.4 8.2E+02 0.018 26.5 20.0 30 69-98 24-53 (933)
410 PF15416 DUF4623: Domain of un 27.2 5.5E+02 0.012 24.5 16.2 103 153-267 157-273 (442)
411 KOG1230 Protein containing rep 26.8 4.7E+02 0.01 25.7 8.8 99 151-252 206-314 (521)
412 KOG1517 Guanine nucleotide bin 26.1 9.6E+02 0.021 26.9 14.0 154 79-273 1177-1341(1387)
413 PF14298 DUF4374: Domain of un 25.8 6.6E+02 0.014 24.9 12.1 61 153-228 368-429 (435)
414 KOG3621 WD40 repeat-containing 25.6 2E+02 0.0043 30.0 6.5 86 214-300 54-146 (726)
415 PF11763 DIPSY: Cell-wall adhe 24.9 3.5E+02 0.0075 21.3 10.0 96 178-299 5-101 (123)
416 COG4222 Uncharacterized protei 24.8 6.6E+02 0.014 24.5 10.3 30 66-95 66-95 (391)
417 KOG4497 Uncharacterized conser 24.5 5.5E+02 0.012 24.5 8.5 72 216-292 30-104 (447)
418 PF11337 DUF3139: Protein of u 24.1 63 0.0014 23.8 2.1 15 1-15 1-15 (85)
419 KOG1896 mRNA cleavage and poly 23.9 9E+02 0.019 27.4 11.1 35 61-97 1089-1123(1366)
420 KOG0307 Vesicle coat complex C 22.8 2.6E+02 0.0057 30.7 7.0 55 213-267 274-329 (1049)
421 PF04762 IKI3: IKI3 family; I 22.7 1.1E+03 0.023 26.2 25.6 232 73-353 26-321 (928)
422 PRK14131 N-acetylneuraminic ac 22.1 7E+02 0.015 23.8 14.6 102 142-253 38-146 (376)
423 PF10647 Gmad1: Lipoprotein Lp 22.1 5.8E+02 0.013 22.9 22.3 146 132-300 25-186 (253)
424 PF00780 CNH: CNH domain; Int 21.7 5.8E+02 0.013 22.8 16.4 50 246-299 105-157 (275)
425 COG4880 Secreted protein conta 21.4 7.1E+02 0.015 24.7 8.9 76 215-298 120-196 (603)
426 PF11763 DIPSY: Cell-wall adhe 21.2 4.2E+02 0.009 20.9 9.1 19 176-194 81-99 (123)
427 COG4590 ABC-type uncharacteriz 21.1 5.3E+02 0.012 25.7 8.1 147 74-263 226-386 (733)
428 KOG2314 Translation initiation 20.9 6.3E+02 0.014 25.9 8.6 60 235-299 493-557 (698)
429 KOG0276 Vesicle coat complex C 20.7 9.7E+02 0.021 25.0 21.5 148 73-263 18-169 (794)
430 COG3698 Predicted periplasmic 20.6 2.6E+02 0.0057 24.7 5.4 41 154-194 41-84 (250)
431 KOG0277 Peroxisomal targeting 20.5 6.7E+02 0.014 23.0 10.6 52 79-153 116-170 (311)
432 PF15390 DUF4613: Domain of un 20.2 7.6E+02 0.016 25.6 9.1 81 217-297 320-402 (671)
433 PF12894 Apc4_WD40: Anaphase-p 20.1 2.3E+02 0.0049 18.2 3.9 26 72-97 15-40 (47)
434 KOG0642 Cell-cycle nuclear pro 20.1 7.5E+02 0.016 25.2 9.0 157 71-264 399-560 (577)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=2.1e-62 Score=447.78 Aligned_cols=367 Identities=50% Similarity=0.859 Sum_probs=313.4
Q ss_pred cchHHHHHHHHHHHhccCCCCCCccCCCCCceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCee
Q 016318 4 RGFLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGP 83 (391)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~l 83 (391)
++++..++++++++..+++|..+.....+++. ...++ ...++.+......|||++.+|+.|.--
T Consensus 5 ~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~-------------~~~~~l~~~~~~~g~E~~~fd~~~~gp 68 (376)
T KOG1520|consen 5 RFLFLFIFLFLAVIILLYLLSGSSIAGSPDDR---LFSKL-------------PLLGKLIPNNHLTGPESLLFDPQGGGP 68 (376)
T ss_pred hhhhHHHHHHHHHHHhhhccCcccccCCchhc---ccCCC-------------CcccccccccccCChhhheecccCCCc
Confidence 33444455666777777667766655444432 11111 112222334446799999999988778
Q ss_pred EEEecCCEEEEEeCC--ceeEEEee--cCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeC
Q 016318 84 YTGVADGRILFWDGL--KWTDFAFT--SNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 159 (391)
Q Consensus 84 y~~~~~g~I~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~ 159 (391)
|++..+|+|++|.+. +|..++.. +.+.+..|++ .....++.||||+||+|+..+|+|||||++.||+++++
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~-----~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p 143 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP-----GSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGP 143 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCC-----cceecccccCCcceEEeccCCCeEEEEecceeeEEECC
Confidence 999999999999875 78888776 4454444443 13467788999999999986669999999999999999
Q ss_pred CCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcce
Q 016318 160 EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNG 239 (391)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ng 239 (391)
++++.+.+.++.+|.++++.|+++++++|.+||||+|++|++++++.+++|++++||+++||+.++.++++.+++.+|||
T Consensus 144 ~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NG 223 (376)
T KOG1520|consen 144 EGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNG 223 (376)
T ss_pred CCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeee
Q 016318 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFL 318 (391)
Q Consensus 240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~ 318 (391)
+|+|+|++++.++|+...||.|||++|+++|+.|+|++ +||+||||+.+++|++|||+...++.+.+++.++|+.|+++
T Consensus 224 laLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~ 303 (376)
T KOG1520|consen 224 LALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFI 303 (376)
T ss_pred ccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred eecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecCCCCeEEEEeCC
Q 016318 319 LKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 391 (391)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~~~~~i~~~~~~ 391 (391)
.+++........+.-.+.+|..|.+.|.+|++++++||.+|+....++++.|++|+||+||+.+|+|+|++|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 304 AKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred HhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence 9998877655544444456677888889999999999999999999999999999999999999999999985
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.95 E-value=6.2e-26 Score=206.83 Aligned_cols=233 Identities=30% Similarity=0.501 Sum_probs=178.3
Q ss_pred cceEEEcc-CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 71 PESMAFDP-LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 71 Pe~i~~d~-~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
||++++|+ +|.++|++..+++|++++++ ....+.. ...|.|++++..+++|||+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~------------------------~~~~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID------------------------LPGPNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------SSSEEEEEEECTTSEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe------------------------cCCCceEEEEccCCEEEEE
Confidence 79999997 88888889899999999988 3222211 2229999999337999999
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
+. .++..+|+++++++.+.....+. +...||++++|++|++|++++...... ....|+++++++. ++.
T Consensus 58 ~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 58 DS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp ET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEE
T ss_pred Ec-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeE
Confidence 85 56777799999999887764444 788999999999999999996522110 0111889999998 888
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc--CccceeecccC---CCCCceEeCCCCCEEEEEcCCCc
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK--AGNLEAFAILP---GYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~--~g~~~~~~~~~---g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
+.+.+++..||||+++||++.||++++.+++|++|+++.+. ....+++.+++ |.||++++|++|++|||....
T Consensus 127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-- 204 (246)
T PF08450_consen 127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-- 204 (246)
T ss_dssp EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--
T ss_pred EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--
Confidence 88888999999999999999999999999999999987432 34456665543 469999999999999998764
Q ss_pred hhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEE---CCEEEEec
Q 016318 303 LYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEK---DGKLWMGS 379 (391)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~---~g~Lylgs 379 (391)
+.|.++|++|+.+..+.-+. . .++.++.. .++||+.|
T Consensus 205 ------------------------------------~~I~~~~p~G~~~~~i~~p~-~---~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 205 ------------------------------------GRIVVFDPDGKLLREIELPV-P---RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ------------------------------------TEEEEEETTSCEEEEEE-SS-S---SEEEEEEESTTSSEEEEEE
T ss_pred ------------------------------------CEEEEECCCccEEEEEcCCC-C---CEEEEEEECCCCCEEEEEe
Confidence 45888999999988887652 2 35566653 37899987
Q ss_pred C
Q 016318 380 V 380 (391)
Q Consensus 380 ~ 380 (391)
-
T Consensus 245 a 245 (246)
T PF08450_consen 245 A 245 (246)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-24 Score=200.43 Aligned_cols=269 Identities=24% Similarity=0.334 Sum_probs=190.3
Q ss_pred CcceEEEccCCC-eeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 70 GPESMAFDPLGR-GPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 70 gPe~i~~d~~G~-~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
..|+...+++.+ ++|++..+++|+++++. ..+.+.. ....+.+..++. ++.|+
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-----------------------p~~~~~~~~~d~-~g~Lv 81 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-----------------------PGGFSSGALIDA-GGRLI 81 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-----------------------CCCcccceeecC-CCeEE
Confidence 344444554444 79999999999999986 3333321 134466778887 78888
Q ss_pred EEECCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318 147 IADAYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK 225 (391)
Q Consensus 147 V~d~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~ 225 (391)
+++ .|+..++++++.. +.+....++.+...+|+..++++|.+||++++. +. ....+..+.|.||++||.++
T Consensus 82 ~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~ 153 (307)
T COG3386 82 ACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGG 153 (307)
T ss_pred EEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCC
Confidence 875 4566666565555 667677778888999999999999999999763 11 22234466789999999766
Q ss_pred eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec---cccCccc-eeecc-cCCCCCceEeCCCCCEEEEEcCC
Q 016318 226 QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI---GEKAGNL-EAFAI-LPGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 226 ~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~---g~~~g~~-~~~~~-~~g~p~~i~~d~~G~lwva~~~~ 300 (391)
..+.+.+.+..|||||+|||++.+|++||..++|++++.+ +...+.. .++.+ .+|.|||+++|.+|++|++...+
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 6666556699999999999999999999999999999987 4433332 22333 57999999999999999654432
Q ss_pred CchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEECCEEEEecC
Q 016318 301 RSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSV 380 (391)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~ 380 (391)
.. .+..+.+.++++.++..|.....++++++ ++.+.+++.+...+.. ..++ .....|.||....
T Consensus 234 g~----~v~~~~pdG~l~~~i~lP~~~~t~~~FgG----------~~~~~L~iTs~~~~~~-~~~~-~~~~~G~lf~~~~ 297 (307)
T COG3386 234 GG----RVVRFNPDGKLLGEIKLPVKRPTNPAFGG----------PDLNTLYITSARSGMS-RMLT-ADPLGGGLFSLRL 297 (307)
T ss_pred Cc----eEEEECCCCcEEEEEECCCCCCccceEeC----------CCcCEEEEEecCCCCC-cccc-ccccCceEEEEec
Confidence 21 13345556888888888766666655553 4567777776666665 5555 5556688888777
Q ss_pred CCCeEE
Q 016318 381 LMPFVA 386 (391)
Q Consensus 381 ~~~~i~ 386 (391)
..+.+.
T Consensus 298 ~~~G~~ 303 (307)
T COG3386 298 EVKGLP 303 (307)
T ss_pred ccCCcc
Confidence 665443
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.88 E-value=5.3e-23 Score=153.32 Aligned_cols=88 Identities=52% Similarity=0.938 Sum_probs=75.2
Q ss_pred cceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318 180 NDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 180 ~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
|+++++++ |.||||++|++|++++++.+++|+.++|||++|||++++++++.+++.+||||++++|+++++|+|+..+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016318 259 LHKYWLIGE 267 (391)
Q Consensus 259 I~~~~~~g~ 267 (391)
|+|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999985
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.84 E-value=6.7e-19 Score=153.88 Aligned_cols=238 Identities=17% Similarity=0.211 Sum_probs=177.6
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
..-.+|..++.++||.++|++...|.|-++|+. +.+.+... .+.+|++|.+++ +|
T Consensus 59 p~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg----------------------~Ga~Phgiv~gp-dg 115 (353)
T COG4257 59 PNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG----------------------SGASPHGIVVGP-DG 115 (353)
T ss_pred CCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC----------------------CCCCCceEEECC-CC
Confidence 345689999999999989999999999999997 44444321 267899999999 89
Q ss_pred cEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
.+||+|...+|.++|+++.+++.+.-+.+ ......+...+|++|++||+... |.--+.||.
T Consensus 116 ~~Witd~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa 176 (353)
T COG4257 116 SAWITDTGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPA 176 (353)
T ss_pred CeeEecCcceeEEecCcccceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcc
Confidence 99999999999999999999888753322 12235677899999999999854 444589999
Q ss_pred CCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cCCCCCceEeCCCCCEEEEEcC
Q 016318 224 TKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 224 ~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~g~p~~i~~d~~G~lwva~~~ 299 (391)
++.++++... ...|+||+..|||+ +|+++-..+-|-+++ +..+..+++.. +....+.|..|+.|++|+++..
T Consensus 177 ~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiarid---p~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg 252 (353)
T COG4257 177 RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARID---PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG 252 (353)
T ss_pred cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcc---cccCCcceecCCCcccccccccccCccCcEEEeccC
Confidence 9988888643 35799999999999 999988889999998 44455566542 1223456889999999999776
Q ss_pred CCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEEEEEC-CEEEEe
Q 016318 300 RRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKD-GKLWMG 378 (391)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~~~~~-g~Lylg 378 (391)
. +.+.+||+..+.-.+|--++.+. ..-++..++ |.+|+.
T Consensus 253 ~--------------------------------------g~l~rfdPs~~sW~eypLPgs~a--rpys~rVD~~grVW~s 292 (353)
T COG4257 253 T--------------------------------------GSLHRFDPSVTSWIEYPLPGSKA--RPYSMRVDRHGRVWLS 292 (353)
T ss_pred C--------------------------------------ceeeEeCcccccceeeeCCCCCC--CcceeeeccCCcEEee
Confidence 5 44666777766555654433322 122343333 788888
Q ss_pred cCCCCeEEEEe
Q 016318 379 SVLMPFVAVYD 389 (391)
Q Consensus 379 s~~~~~i~~~~ 389 (391)
...+++|+|++
T Consensus 293 ea~agai~rfd 303 (353)
T COG4257 293 EADAGAIGRFD 303 (353)
T ss_pred ccccCceeecC
Confidence 88888887765
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.81 E-value=6.6e-17 Score=173.22 Aligned_cols=213 Identities=21% Similarity=0.234 Sum_probs=147.1
Q ss_pred cccccCcceEEEccC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318 65 LNQIQGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~ 142 (391)
...+..|.++++|++ |+++++++.+++|.+++.+ ........ .. ..+...+. .......+|.||++++++
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g--~~G~~dG~-----~~~a~f~~P~GIavd~~g 635 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TG--EEGLRDGS-----FEDATFNRPQGLAYNAKK 635 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CC--CcCCCCCc-----hhccccCCCcEEEEeCCC
Confidence 345789999999974 6666667788999999887 33222111 00 00100111 112246789999999855
Q ss_pred CcEEEEECCCC-eEEEeCCCCeeEEceec------cCC------CcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318 143 GDLYIADAYFG-LMKVGPEGGLATSLATE------AEG------VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 143 g~L~V~d~~~g-l~~~d~~~g~~~~~~~~------~~~------~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~ 208 (391)
+.|||+|..++ |.++|..++.++.+... ..+ ..+..|.++++++ +|++|+++++
T Consensus 636 n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------------ 703 (1057)
T PLN02919 636 NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------------ 703 (1057)
T ss_pred CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------------
Confidence 56999999865 88899998888877431 111 1267899999999 7899999965
Q ss_pred cccCCCceEEEEeCCCCeEEEec---------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC----
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLL---------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA---- 269 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~---------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~---- 269 (391)
+++|++||+.++.+.++. ..+..|+||++++|++.|||+++.+++|+++++++...
T Consensus 704 -----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 -----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred -----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 468888888777665432 12457999999999999999999999999999764210
Q ss_pred c-cc---e---eecc--------cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 270 G-NL---E---AFAI--------LPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 270 g-~~---~---~~~~--------~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
+ .. . .|.+ .-..|.++++|++|++||+...++.
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r 826 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK 826 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence 0 00 0 0100 0125889999999999999877644
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.65 E-value=7.6e-14 Score=122.46 Aligned_cols=244 Identities=16% Similarity=0.215 Sum_probs=174.4
Q ss_pred cccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccce
Q 016318 58 QNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLG 135 (391)
Q Consensus 58 ~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~g 135 (391)
.+++....|.-..|..|.+++||..+++++.. .|.|++++ .+++|....+. ....-..
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~-------------------a~~nlet 152 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH-------------------ADANLET 152 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc-------------------CCCcccc
Confidence 45677777888899999999999955555555 89999997 66666433211 1122234
Q ss_pred EEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 136 LRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 136 i~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
..||+ .|+||+... .| --++||.++.++.+..+ . ...|++|++.+||.+|+++-. .
T Consensus 153 ~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-q---G~gpyGi~atpdGsvwyasla-----------------g 209 (353)
T COG4257 153 AVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP-Q---GGGPYGICATPDGSVWYASLA-----------------G 209 (353)
T ss_pred eeeCC-CccEEEeec-cccceecCcccCceeeeccC-C---CCCCcceEECCCCcEEEEecc-----------------c
Confidence 57898 899999754 34 34899999888887544 2 346999999999999999722 3
Q ss_pred ceEEEEeCCCCeEEEeccC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCceEeC
Q 016318 215 GRVLKYDPTTKQTTVLLRN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTN 288 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d 288 (391)
..|.++||.++..+++... -+....|-.++.|+ +|+++..+.++++|+... .....+ .+|+ .|+.|.+|
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~---~sW~ey-pLPgs~arpys~rVD 284 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV---TSWIEY-PLPGSKARPYSMRVD 284 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc---ccceee-eCCCCCCCcceeeec
Confidence 5789999999877666422 12345677888898 999999999999998432 222222 2555 57899999
Q ss_pred CCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCCeeeceeEE
Q 016318 289 EKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEV 368 (391)
Q Consensus 289 ~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~~~~~is~~ 368 (391)
..|++|...... +.+.+||+....+.+|-.+.-.. ..-.+
T Consensus 285 ~~grVW~sea~a--------------------------------------gai~rfdpeta~ftv~p~pr~n~--gn~ql 324 (353)
T COG4257 285 RHGRVWLSEADA--------------------------------------GAIGRFDPETARFTVLPIPRPNS--GNIQL 324 (353)
T ss_pred cCCcEEeecccc--------------------------------------CceeecCcccceEEEecCCCCCC--Cceec
Confidence 999999987654 44788999888888885543221 12233
Q ss_pred EEECCEEEEecCCCCeEEEEe
Q 016318 369 EEKDGKLWMGSVLMPFVAVYD 389 (391)
Q Consensus 369 ~~~~g~Lylgs~~~~~i~~~~ 389 (391)
....|++|++....+.+.+++
T Consensus 325 ~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 325 DGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred cCCCCceeecccCcceeEEEE
Confidence 445589999998888887765
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.63 E-value=8.1e-14 Score=149.65 Aligned_cols=211 Identities=15% Similarity=0.198 Sum_probs=144.7
Q ss_pred cccCcceEEEccCCCeeEE-EecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 67 QIQGPESMAFDPLGRGPYT-GVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
.+..|.+|++|++|+.+|+ ++.+++|.+++.. .+++++..+... ....+ +. .........|.+++++++++
T Consensus 622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g-~~~~g-g~----~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKG-SDYQG-GK----KGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCccc-CCCCC-Ch----hhhHhhcCCCeEEEEecCCC
Confidence 3567999999998886666 5566788888875 444454321100 00000 00 00111257899999998678
Q ss_pred cEEEEECCCC-eEEEeCCCCeeEEceec-----cCC-----CcccCCcceeecCCCC-EEEEeCCCcccchhheeeeccc
Q 016318 144 DLYIADAYFG-LMKVGPEGGLATSLATE-----AEG-----VPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~-----~~~-----~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~ 211 (391)
.|||++..++ |+++|..++.+..+... ..+ ..+..|++|+++++|+ ||++++.
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--------------- 760 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--------------- 760 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC---------------
Confidence 9999998755 99999988877655321 011 2356899999999986 9999965
Q ss_pred CCCceEEEEeCCCCeEEEecc----------------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318 212 EDTGRVLKYDPTTKQTTVLLR----------------------NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA 269 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~~~~~~~----------------------~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~ 269 (391)
+++|.+||++++....+.. .+..|.|++++++|+ +||+++.+++|.+++.++..
T Consensus 761 --n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~- 836 (1057)
T PLN02919 761 --SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR- 836 (1057)
T ss_pred --CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe-
Confidence 5789999988766443210 134689999999998 99999999999999976531
Q ss_pred ccceeecc--------------cCCCCCceEeCCCCCEEEEEcCCCchh
Q 016318 270 GNLEAFAI--------------LPGYPDNVRTNEKGEFWVAIHCRRSLY 304 (391)
Q Consensus 270 g~~~~~~~--------------~~g~p~~i~~d~~G~lwva~~~~~~~~ 304 (391)
...+.. .-..|.+|+++++|++||+...++.+.
T Consensus 837 --v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 837 --VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred --EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 111110 012589999999999999987766543
No 9
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.52 E-value=2.7e-12 Score=116.87 Aligned_cols=138 Identities=25% Similarity=0.403 Sum_probs=103.7
Q ss_pred ceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeCCCcccchhheeeeccc
Q 016318 134 LGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
-|.++++++++||+.|...+ |+++++++++.+.+... .|++++++ ++|.+|+++.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-------~~~G~~~~~~~g~l~v~~~---------------- 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-------GPNGMAFDRPDGRLYVADS---------------- 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-------SEEEEEEECTTSEEEEEET----------------
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-------CCceEEEEccCCEEEEEEc----------------
Confidence 46788876899999998765 99999999876654321 28999998 7899999995
Q ss_pred CCCceEEEEeCCCCeEEEecc------CCCCcceEEEccCCCEEEEEeCCC--------CeEEEEEeccccCccceeecc
Q 016318 212 EDTGRVLKYDPTTKQTTVLLR------NLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAI 277 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~~~~~~~------~~~~~ngia~~~d~~~l~v~et~~--------~~I~~~~~~g~~~g~~~~~~~ 277 (391)
+++..+|+++++++.+.. .+..||.++++++|+ +|+++... ++|++++.+ ++.....+
T Consensus 60 ---~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~ 131 (246)
T PF08450_consen 60 ---GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD 131 (246)
T ss_dssp ---TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE
T ss_pred ---CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----CeEEEEec
Confidence 356667999998877753 356899999999999 99998754 569999855 23344433
Q ss_pred cCCCCCceEeCCCCC-EEEEEcCCCc
Q 016318 278 LPGYPDNVRTNEKGE-FWVAIHCRRS 302 (391)
Q Consensus 278 ~~g~p~~i~~d~~G~-lwva~~~~~~ 302 (391)
.-..|++|+++++|+ +|++......
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CcccccceEECCcchheeecccccce
Confidence 235799999999997 7887766543
No 10
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.50 E-value=1.4e-11 Score=118.83 Aligned_cols=169 Identities=23% Similarity=0.315 Sum_probs=115.2
Q ss_pred cccCcceEEEccCCCeeEEEec------------CC-EEEEEeCC-------ceeEEEeecCCCcccCCCCCCccccccc
Q 016318 67 QIQGPESMAFDPLGRGPYTGVA------------DG-RILFWDGL-------KWTDFAFTSNNRSELCNPKPIATSYLKN 126 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~------------~g-~I~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (391)
.+..|..|++|++|+ +|++.. .+ +|++++.. +++.|+
T Consensus 12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---------------------- 68 (367)
T TIGR02604 12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---------------------- 68 (367)
T ss_pred ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee----------------------
Confidence 478999999999999 777752 23 88888542 122222
Q ss_pred cCccCccceEEEecCCCcEEEEECCCCeEEE-eCCC-----CeeEEceeccCCC---cccCCcceeecCCCCEEEEeCCC
Q 016318 127 EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEG-----GLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSST 197 (391)
Q Consensus 127 ~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~-d~~~-----g~~~~~~~~~~~~---~~~~~~~l~~d~~G~ly~td~~~ 197 (391)
.....|.||++.+ ++ |||++ ...|+++ +.++ ++.+.+.+..... ....++++++++||.||++..+.
T Consensus 69 -~~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~ 144 (367)
T TIGR02604 69 -EELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT 144 (367)
T ss_pred -cCCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence 1246799999987 66 99986 3458888 4432 2445555443322 24568999999999999998642
Q ss_pred cccc--hhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 198 NYQR--RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 198 ~~~~--~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
.... ........+....|+++++++++++.+++..++..|+|++++++|+ +|+++.......++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 145 LASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred CCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 1100 0000011122335789999999999999999999999999999998 889887655555543
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=7.4e-11 Score=112.20 Aligned_cols=238 Identities=14% Similarity=0.166 Sum_probs=139.9
Q ss_pred cCcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
.+|..++++++|+.+|++.. +++|..|+.+ .++..... ...+.|.++++++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~---------------------~~~~~p~~i~~~~~g~~ 93 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES---------------------PLPGSPTHISTDHQGRF 93 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---------------------cCCCCceEEEECCCCCE
Confidence 47999999999998898764 5667555432 22222110 11356899999985556
Q ss_pred EEEEECCCC-eEEEeCCC-CeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 145 LYIADAYFG-LMKVGPEG-GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 145 L~V~d~~~g-l~~~d~~~-g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
||++....+ |..++.++ +..........+ ...|..++++++|+ +|+++.. .+.|..||
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d 154 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFT 154 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEE
Confidence 899876544 67776642 222111111111 23578889999985 6677743 46788887
Q ss_pred CCC-CeEEE------eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cC------CCCCce
Q 016318 222 PTT-KQTTV------LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LP------GYPDNV 285 (391)
Q Consensus 222 ~~~-~~~~~------~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~------g~p~~i 285 (391)
.++ +.+.. -......|++++++||++++|+++...+.|..|+++.. .++.+.... .| ..+..|
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeE
Confidence 754 33321 11223568999999999999999887899999988632 123333222 11 133458
Q ss_pred EeCCCCC-EEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCC
Q 016318 286 RTNEKGE-FWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG 359 (391)
Q Consensus 286 ~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g 359 (391)
.++++|+ +|++......+....+.......+++.+++.. ..+.-+.++++|+.+++-+..++
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~------------~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE------------TQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc------------ccCCceEECCCCCEEEEEEccCC
Confidence 8999998 77764443333221111111111233332221 12334678999998887654444
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=9.7e-11 Score=112.07 Aligned_cols=243 Identities=19% Similarity=0.246 Sum_probs=146.1
Q ss_pred cccCcceEEEccCCCeeEEEecC----CEEEEEe--CC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318 67 QIQGPESMAFDPLGRGPYTGVAD----GRILFWD--GL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~----g~I~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~ 138 (391)
....|..++++++++.+|+.... |.|..+. .+ .++.+... ......|..+++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--------------------~~~g~~p~~i~~ 94 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--------------------PSGGSSPCHIAV 94 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--------------------EESSSCEEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee--------------------ccCCCCcEEEEE
Confidence 35699999999999999999874 5666553 32 23333211 112567889999
Q ss_pred ecCCCcEEEEECCCC-eEEEeCCC-CeeEEceec---------cCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318 139 DKKTGDLYIADAYFG-LMKVGPEG-GLATSLATE---------AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 139 d~~~g~L~V~d~~~g-l~~~d~~~-g~~~~~~~~---------~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~ 206 (391)
++++..|||+++..| +..++.+. |.+...... ...+....|..+.++++|+ +|++|-+
T Consensus 95 ~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG---------- 164 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG---------- 164 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----------
T ss_pred ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----------
Confidence 986667999998766 54544433 444433110 0112345778899999985 8888854
Q ss_pred eecccCCCceEEEEeCCCC--eEEE----eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---c
Q 016318 207 LVFSAEDTGRVLKYDPTTK--QTTV----LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---I 277 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~--~~~~----~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~ 277 (391)
..+|+.|+.+.. ++.. -......|..++++||++++||.....+.|..|++... .+..+... .
T Consensus 165 -------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~ 236 (345)
T PF10282_consen 165 -------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTIST 236 (345)
T ss_dssp -------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEES
T ss_pred -------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeee
Confidence 456766665443 3433 22445679999999999999999999999999988722 23333322 2
Q ss_pred cC----C--CCCceEeCCCCC-EEEEEcCCCchhhhhhhcCcccee--eeeecCccceeeeEEeecCccceEEEEECCCC
Q 016318 278 LP----G--YPDNVRTNEKGE-FWVAIHCRRSLYSHLMALYPKIRH--FLLKLPISAKTHYLIHVGGRLHAMAVKYSPEG 348 (391)
Q Consensus 278 ~~----g--~p~~i~~d~~G~-lwva~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g 348 (391)
+| + .|..|+++++|+ +||+......+....+ .+..++ .+..++ .+ ...+.-+.++++|
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~--d~~~g~l~~~~~~~----------~~-G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL--DPATGTLTLVQTVP----------TG-GKFPRHFAFSPDG 303 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE--CTTTTTEEEEEEEE----------ES-SSSEEEEEE-TTS
T ss_pred ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE--ecCCCceEEEEEEe----------CC-CCCccEEEEeCCC
Confidence 32 1 456799999998 7887766544322111 111111 111111 11 2335667788999
Q ss_pred CEEEEEeCCCCC
Q 016318 349 KILQVLEDSKGK 360 (391)
Q Consensus 349 ~~~~~~~~~~g~ 360 (391)
+.+.+-+..++.
T Consensus 304 ~~l~Va~~~s~~ 315 (345)
T PF10282_consen 304 RYLYVANQDSNT 315 (345)
T ss_dssp SEEEEEETTTTE
T ss_pred CEEEEEecCCCe
Confidence 988877655544
No 13
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.45 E-value=7.2e-12 Score=107.72 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=112.6
Q ss_pred ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC
Q 016318 176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~ 255 (391)
-+..|+--+||+|+.|...++ .++ .+..+.++.++.+...++++.+...+..+||++++.|.+..|+.++.
T Consensus 108 knR~NDgkvdP~Gryy~GtMa-d~~--------~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMA-DFG--------DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred hcccccCccCCCCceeeeeec-ccc--------ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccC
Confidence 457788899999999888754 111 12233455555555668999998999999999999999999999999
Q ss_pred CCeE--EEEEeccccCccceeeccc-------CCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccce
Q 016318 256 VGRL--HKYWLIGEKAGNLEAFAIL-------PGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAK 326 (391)
Q Consensus 256 ~~~I--~~~~~~g~~~g~~~~~~~~-------~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 326 (391)
+..| |.|+..+....+.+++.++ +-.||++++|.+|++|||+.++..+ ....|..||.+..+-.|..
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V----~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV----QKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE----EEECCCCCcEEEEEEcCCC
Confidence 9999 6665665544444444332 2379999999999999999988765 3347888998888777777
Q ss_pred eeeEEeecCccce
Q 016318 327 THYLIHVGGRLHA 339 (391)
Q Consensus 327 ~~~~~~~~~~~~~ 339 (391)
...+++++++...
T Consensus 255 qitsccFgGkn~d 267 (310)
T KOG4499|consen 255 QITSCCFGGKNLD 267 (310)
T ss_pred ceEEEEecCCCcc
Confidence 7788888876544
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=2.9e-10 Score=108.73 Aligned_cols=205 Identities=18% Similarity=0.237 Sum_probs=125.6
Q ss_pred ccCcceEEEccCCCeeEEEec-CCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 68 IQGPESMAFDPLGRGPYTGVA-DGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
-.+|..++++++|+.+|++.+ +|.|..++.+ ........... .+.++ .........|+.+.++++++
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~-----~g~g~----~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH-----EGSGP----NPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES-----EEEES----STTTTSSTCEEEEEE-TTSS
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc-----CCCCC----cccccccccceeEEECCCCC
Confidence 358999999999999999886 5666555433 22221110000 00000 00112356799999999556
Q ss_pred cEEEEECCCC-eEEEeCC--CCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceE--
Q 016318 144 DLYIADAYFG-LMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRV-- 217 (391)
Q Consensus 144 ~L~V~d~~~g-l~~~d~~--~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l-- 217 (391)
.+||+|.+.. |+.++.+ +++++.... ..-.....|++++++++| .+|+.... ++.|
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~~v~v 218 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SNTVSV 218 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT-----------------TTEEEE
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC-----------------CCcEEE
Confidence 6999998754 6665554 444544221 112234579999999998 58888743 2444
Q ss_pred EEEeCCCCeEEEec------cC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CC-CCCce
Q 016318 218 LKYDPTTKQTTVLL------RN---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PG-YPDNV 285 (391)
Q Consensus 218 ~~~d~~~~~~~~~~------~~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g-~p~~i 285 (391)
+.++..+++++.+. .. ...+.+|+++|||++||+++...+.|..|.++.. .++.+..... .| .|+++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~ 297 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHF 297 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEE
Confidence 55555566655432 11 1267899999999999999999999999998542 2444433322 23 69999
Q ss_pred EeCCCCC-EEEEEcCC
Q 016318 286 RTNEKGE-FWVAIHCR 300 (391)
Q Consensus 286 ~~d~~G~-lwva~~~~ 300 (391)
+++++|+ +||+....
T Consensus 298 ~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDS 313 (345)
T ss_dssp EE-TTSSEEEEEETTT
T ss_pred EEeCCCCEEEEEecCC
Confidence 9999999 66666554
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.25 E-value=1.5e-08 Score=96.34 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=99.2
Q ss_pred cCccceEEEecCCCcEEEEECC-CCeEEEeCC-CCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhhee
Q 016318 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPE-GGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~-~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~ 206 (391)
.+.|..+++++++..||++... .+|..++.+ +++++....... ...|..++++++|+ +|++...
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~---~~~p~~i~~~~~g~~l~v~~~~---------- 100 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL---PGSPTHISTDHQGRFLFSASYN---------- 100 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC---CCCceEEEECCCCCEEEEEEcC----------
Confidence 4668899999855568998764 457666554 455544322111 12578999999996 6666532
Q ss_pred eecccCCCceEEEEeCCC-CeE---EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce----eecc-
Q 016318 207 LVFSAEDTGRVLKYDPTT-KQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE----AFAI- 277 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~-~~~---~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~----~~~~- 277 (391)
.+.+..|+.++ +.. .........|.+++++||++++|+++...+.|+.|+++.. +... ....
T Consensus 101 -------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~~~~~ 171 (330)
T PRK11028 101 -------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPAEVTT 171 (330)
T ss_pred -------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC--CcccccCCCceec
Confidence 46777776642 222 1112344578999999999999999988899999998642 2111 1111
Q ss_pred -cCCCCCceEeCCCCC-EEEEEcCCCchhh
Q 016318 278 -LPGYPDNVRTNEKGE-FWVAIHCRRSLYS 305 (391)
Q Consensus 278 -~~g~p~~i~~d~~G~-lwva~~~~~~~~~ 305 (391)
....|..++++++|+ +|++......+..
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 123589999999998 6777654444433
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=8.9e-09 Score=94.16 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=132.3
Q ss_pred ccCcceEEEccCCCeeEEEecCCEEEEEeC---C-ce----eEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318 68 IQGPESMAFDPLGRGPYTGVADGRILFWDG---L-KW----TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~---~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d 139 (391)
...|..+++|++|+.+|++.+..+.+.+-+ + .. ..+..... ++ ........++...++
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~---------~p-----~~rQ~~~h~H~a~~t 153 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS---------GP-----HERQESPHVHSANFT 153 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC---------CC-----CccccCCccceeeeC
Confidence 357899999999999999988755444422 1 11 11111110 00 111112336778888
Q ss_pred cCCCcEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceE
Q 016318 140 KKTGDLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRV 217 (391)
Q Consensus 140 ~~~g~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l 217 (391)
++++.|+++|-+. .|+.++.+.|+++..... .-.+...|+.|++.++|. .|+.. |...+=-+
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v 217 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDV 217 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEE
Confidence 8545688888774 477777777766654322 224556899999999996 66665 23334456
Q ss_pred EEEeCCCCeEEEec------cCCC---CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCC-CCCce
Q 016318 218 LKYDPTTKQTTVLL------RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPG-YPDNV 285 (391)
Q Consensus 218 ~~~d~~~~~~~~~~------~~~~---~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g-~p~~i 285 (391)
+.||+..++++.+. +++. ....|.+++||++||+++...+.|+.|.++.. .++.+.+.. ..| .|+..
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccCCcCCccc
Confidence 77888878877663 2222 23457899999999999999899999988742 244444432 335 49999
Q ss_pred EeCCCCCEEEEEcCC
Q 016318 286 RTNEKGEFWVAIHCR 300 (391)
Q Consensus 286 ~~d~~G~lwva~~~~ 300 (391)
.+++.|++.++....
T Consensus 297 ~i~~~g~~Liaa~q~ 311 (346)
T COG2706 297 NINPSGRFLIAANQK 311 (346)
T ss_pred eeCCCCCEEEEEccC
Confidence 999999988887654
No 17
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.7e-09 Score=98.42 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=119.4
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
+....++..|. +++...+..++..+.... +.++.. .......||....+++ +|++|+++
T Consensus 69 ~~~~~~d~~g~-Lv~~~~g~~~~~~~~~~~~t~~~~~------------------~~~~~~~r~ND~~v~p-dG~~wfgt 128 (307)
T COG3386 69 SSGALIDAGGR-LIACEHGVRLLDPDTGGKITLLAEP------------------EDGLPLNRPNDGVVDP-DGRIWFGD 128 (307)
T ss_pred ccceeecCCCe-EEEEccccEEEeccCCceeEEeccc------------------cCCCCcCCCCceeEcC-CCCEEEeC
Confidence 55666776665 666655544444433333 333221 1112358899999999 89999998
Q ss_pred CC-----C------C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318 150 AY-----F------G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 150 ~~-----~------g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
.. . | ||++++.++..+.+.. .+..+|+|++++|| .+|++|+. .++
T Consensus 129 ~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-----~~~~~NGla~SpDg~tly~aDT~-----------------~~~ 186 (307)
T COG3386 129 MGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-----DLTIPNGLAFSPDGKTLYVADTP-----------------ANR 186 (307)
T ss_pred CCccccCccccCCcceEEEEcCCCCEEEeecC-----cEEecCceEECCCCCEEEEEeCC-----------------CCe
Confidence 87 2 3 9999997655544432 25689999999999 89999975 468
Q ss_pred EEEEeCCC--C----eE-EEec-cCCCCcceEEEccCCCEEE-EEeCCCCeEEEEEeccccCccceeecccC-CCCCceE
Q 016318 217 VLKYDPTT--K----QT-TVLL-RNLQFPNGLSLSKDKSFFV-FCEGSVGRLHKYWLIGEKAGNLEAFAILP-GYPDNVR 286 (391)
Q Consensus 217 l~~~d~~~--~----~~-~~~~-~~~~~~ngia~~~d~~~l~-v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g~p~~i~ 286 (391)
+++|+.+. + +. .+.. ..-..|.|++++.+|+ +| .+...+.+|.+++.+|.. .....+| ..|.+++
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l----~~~i~lP~~~~t~~~ 261 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKL----LGEIKLPVKRPTNPA 261 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcE----EEEEECCCCCCccce
Confidence 88886541 2 11 1111 1235799999999999 78 444444599999876532 2223456 5788888
Q ss_pred eCCC--CCEEEEEcCC
Q 016318 287 TNEK--GEFWVAIHCR 300 (391)
Q Consensus 287 ~d~~--G~lwva~~~~ 300 (391)
+-.. ..|||+....
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 7542 4588886654
No 18
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.18 E-value=4.5e-09 Score=108.63 Aligned_cols=203 Identities=18% Similarity=0.310 Sum_probs=126.0
Q ss_pred cCcceEEEcc-CCCeeEEE-ecCCEEEEEeC---C----ceeEEEeecCCCcccCCCCCCcccc--ccccCccCccceEE
Q 016318 69 QGPESMAFDP-LGRGPYTG-VADGRILFWDG---L----KWTDFAFTSNNRSELCNPKPIATSY--LKNEHICGRPLGLR 137 (391)
Q Consensus 69 ~gPe~i~~d~-~G~~ly~~-~~~g~I~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~P~gi~ 137 (391)
..---||++| +|. +|++ ....+|+|+.. + .++.++..++ .|-+....|.. +..+.....|.||+
T Consensus 407 sh~Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge----~Clp~desCGDGalA~dA~L~~PkGIa 481 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGE----VCLPADESCGDGALAQDAQLIFPKGIA 481 (1899)
T ss_pred cceeEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEeccCc----CccccccccCcchhcccceeccCCcee
Confidence 3445688887 676 6654 45578888832 1 5666654443 34332221211 13334567799999
Q ss_pred EecCCCcEEEEECCCCeEEEeCCCCeeEEceec---------------cCCCcccCCcceeecC-CCCEEEEeCCCcccc
Q 016318 138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATE---------------AEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQR 201 (391)
Q Consensus 138 ~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~---------------~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~ 201 (391)
+|+ .|.||.+|. .-|-++|.. |.++.+... ....++.+|.+++++| |+.+|+-|..
T Consensus 482 ~dk-~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n----- 553 (1899)
T KOG4659|consen 482 FDK-MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN----- 553 (1899)
T ss_pred Ecc-CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-----
Confidence 998 899999984 358888865 455554321 1123567999999999 8999999954
Q ss_pred hhheeeecccCCCceEEEEeCCCCeEEEec---------------------cCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 016318 202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL---------------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLH 260 (391)
Q Consensus 202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---------------------~~~~~~ngia~~~d~~~l~v~et~~~~I~ 260 (391)
-+++.++. ++++++. ..+..+..|+++++|. |||+|+...||-
T Consensus 554 --------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriN 617 (1899)
T KOG4659|consen 554 --------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRIN 617 (1899)
T ss_pred --------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhh
Confidence 44444433 2222221 1123467899999998 999999887666
Q ss_pred EEEeccccCccceeec------------------------c--cCCCCCceEeCCCCCEEEEEcCCC
Q 016318 261 KYWLIGEKAGNLEAFA------------------------I--LPGYPDNVRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 261 ~~~~~g~~~g~~~~~~------------------------~--~~g~p~~i~~d~~G~lwva~~~~~ 301 (391)
|+..-+. .|+..+++ . .-..|..++++++|.+++|..++.
T Consensus 618 rvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 618 RVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred heEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCch
Confidence 6543211 11111111 0 012477899999999999987753
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.12 E-value=3.3e-07 Score=84.99 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=103.6
Q ss_pred CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeC
Q 016318 81 RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGP 159 (391)
Q Consensus 81 ~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~ 159 (391)
++++++..++.|..++.......... .....|.++++++++..+|++....+ |..+|.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~---------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~ 60 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF---------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDL 60 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE---------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEEC
Confidence 44567777899999987521111111 01345778999984445777765544 888998
Q ss_pred CCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcc
Q 016318 160 EGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN 238 (391)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n 238 (391)
.+++....... + ..+..++++++|+ +|++... ++.+..||..+++..........++
T Consensus 61 ~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~ 118 (300)
T TIGR03866 61 ATGEVIGTLPS--G---PDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPE 118 (300)
T ss_pred CCCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcc
Confidence 88765432111 1 1356788899886 5555432 4689999988765433333234578
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE-EEE
Q 016318 239 GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW-VAI 297 (391)
Q Consensus 239 gia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw-va~ 297 (391)
+++++||++.++++......++.++... ++..........|..+.++++|..+ ++.
T Consensus 119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred eEEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECCCCCEEEEEc
Confidence 9999999997777754444555565432 1111111122357778899999844 553
No 20
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.2e-07 Score=85.16 Aligned_cols=195 Identities=14% Similarity=0.189 Sum_probs=120.7
Q ss_pred cccCcceEEEccCCCeeEEEecC---CEEEE--EeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318 67 QIQGPESMAFDPLGRGPYTGVAD---GRILF--WDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~---g~I~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d 139 (391)
+...|.-++++++++.+|+.... |+|.. +|++ ..+.+... ...+.-|.-+++|
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--------------------~~~g~~p~yvsvd 97 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--------------------TLPGSPPCYVSVD 97 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--------------------ccCCCCCeEEEEC
Confidence 35689999999999999998766 44544 3443 22222110 0112334788999
Q ss_pred cCCCcEEEEECCCC---eEEEeCCCCeeEEcee---ccC-----CCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318 140 KKTGDLYIADAYFG---LMKVGPEGGLATSLAT---EAE-----GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 140 ~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~---~~~-----~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~ 207 (391)
.++.-|+++.+..| ++.++.+ |.+..... ... .+....+....++|+|+ |++.|=+
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----------- 165 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----------- 165 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------
Confidence 83335788877666 3333334 44333211 111 11122355667899995 5555632
Q ss_pred ecccCCCceEEEEeCCCCeEEEec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc---cC-
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI---LP- 279 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~---~~- 279 (391)
..+++.|+.+.|++.... .....|.-|+|+|++++.|+...-++.|..+..++. .++++.... +|
T Consensus 166 ------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 ------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPE 238 (346)
T ss_pred ------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcc
Confidence 468888888877765543 344678999999999999998878888888876653 455554443 33
Q ss_pred CCC-----CceEeCCCCCEEEEEcCC
Q 016318 280 GYP-----DNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 280 g~p-----~~i~~d~~G~lwva~~~~ 300 (391)
.+. ..|.++++|++..+.+..
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCC
Confidence 121 248899999966655443
No 21
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.05 E-value=3.3e-08 Score=91.62 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=118.9
Q ss_pred cceEEEecCCCcEEEEECCC-------------CeEEEeCCCCeeEE-ceecc-CCCcccCCcceeecCC------CCEE
Q 016318 133 PLGLRFDKKTGDLYIADAYF-------------GLMKVGPEGGLATS-LATEA-EGVPLRFTNDLDIDDE------GNVY 191 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~-------------gl~~~d~~~g~~~~-~~~~~-~~~~~~~~~~l~~d~~------G~ly 191 (391)
..++.+|+ .++|||.|.+. .|+.+|..++++.. +.-+. .-.+..+.+++++|.. +.+|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 46788998 89999999763 29999999987533 22111 1124568899999872 5799
Q ss_pred EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC--------------------CcceEEEcc---CCCE
Q 016318 192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--------------------FPNGLSLSK---DKSF 248 (391)
Q Consensus 192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--------------------~~ngia~~~---d~~~ 248 (391)
++|++ .++|+.||..+++...+.+... ...|+++++ |+++
T Consensus 82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~ 144 (287)
T PF03022_consen 82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW 144 (287)
T ss_dssp EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence 99976 4689999999887766543311 135778766 8889
Q ss_pred EEEEeCCCCeEEEEEec---cccCc-------cceeecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeee
Q 016318 249 FVFCEGSVGRLHKYWLI---GEKAG-------NLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFL 318 (391)
Q Consensus 249 l~v~et~~~~I~~~~~~---g~~~g-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~ 318 (391)
||+.-..+.+++++..+ .+... ..+.+.+.++..+++++|++|++|.+....
T Consensus 145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~------------------ 206 (287)
T PF03022_consen 145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ------------------ 206 (287)
T ss_dssp EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC------------------
T ss_pred EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC------------------
Confidence 99998888889998743 11111 112222333456899999999999998764
Q ss_pred eecCccceeeeEEeecCccceEEEEECCCC-----CEEEEEeCCCCCeeeceeEEEEEC---CEEEEecCCCC
Q 016318 319 LKLPISAKTHYLIHVGGRLHAMAVKYSPEG-----KILQVLEDSKGKVVKAISEVEEKD---GKLWMGSVLMP 383 (391)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~~~~g~~~~~is~~~~~~---g~Lylgs~~~~ 383 (391)
..|.+.++++ +.-...+++.. ..++.++.... |+||+-+-.-+
T Consensus 207 --------------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 207 --------------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp --------------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred --------------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECcch
Confidence 2366677776 43334454432 33455565544 99999775443
No 22
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=8.1e-08 Score=93.05 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=131.0
Q ss_pred cCcceEEEccCCCeeEEEecC-CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVAD-GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
..|.++++++.|+.+|+...+ +.|..++...-+.... ......|.+++++++++.+||
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------~~vG~~P~~~~~~~~~~~vYV 132 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------IPVGLGPVGLAVDPDGKYVYV 132 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------eeeccCCceEEECCCCCEEEE
Confidence 689999999999878877654 7788887441111110 011337999999996778999
Q ss_pred EECC--CC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 148 ADAY--FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 148 ~d~~--~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
++.. .+ +.++|..++++... .. .|. .|.+++++++|+ +|++++. ++++..+|.+
T Consensus 133 ~n~~~~~~~vsvid~~t~~~~~~-~~-vG~---~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~ 190 (381)
T COG3391 133 ANAGNGNNTVSVIDAATNKVTAT-IP-VGN---TPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTS 190 (381)
T ss_pred EecccCCceEEEEeCCCCeEEEE-Ee-cCC---CcceEEECCCCCeEEEEecC-----------------CCeEEEEeCC
Confidence 9995 33 99999998865544 21 222 468999999997 9999954 5789999987
Q ss_pred CCeEEE-----eccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCCE-EE
Q 016318 224 TKQTTV-----LLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF-WV 295 (391)
Q Consensus 224 ~~~~~~-----~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l-wv 295 (391)
+..... .......|.++++++|++.+|+++..+ +.+.+++...........-.... .|.++..+++|.. |+
T Consensus 191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEE
Confidence 766653 234456899999999999999999877 58888875542111111111112 5889999999994 45
Q ss_pred EEcC
Q 016318 296 AIHC 299 (391)
Q Consensus 296 a~~~ 299 (391)
+...
T Consensus 270 ~~~~ 273 (381)
T COG3391 270 ANSQ 273 (381)
T ss_pred EecC
Confidence 4333
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.00 E-value=9e-07 Score=82.04 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=115.6
Q ss_pred cCcceEEEccCCCeeEE-EecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 69 QGPESMAFDPLGRGPYT-GVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~-~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
..|.+++++++|+.+|+ +..++.|..++........... ....|..++++++++.+|+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------------------SGPDPELFALHPNGKILYI 89 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------------------CCCCccEEEECCCCCEEEE
Confidence 35788999999987765 4567889888876221111110 1233567788884445778
Q ss_pred EECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 148 ADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 148 ~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
+... +.|..+|..+++...... .+ ..+.+++++++|.++++.+.. ...+..||..+++
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~--~~---~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIP--VG---VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYE 148 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEee--CC---CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCe
Confidence 7654 348889988754321111 11 246789999999877765321 1245667887766
Q ss_pred EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccC------CCCCceEeCCCCCE-EEEEc
Q 016318 227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILP------GYPDNVRTNEKGEF-WVAIH 298 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~------g~p~~i~~d~~G~l-wva~~ 298 (391)
..........|+.+++++|++.++++....+.|..+++...+. ...+. ..+ -.|.+++++++|+. |++..
T Consensus 149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 5432222346788999999998887755567898888764321 11111 111 13567889999984 66654
Q ss_pred CC
Q 016318 299 CR 300 (391)
Q Consensus 299 ~~ 300 (391)
..
T Consensus 227 ~~ 228 (300)
T TIGR03866 227 PA 228 (300)
T ss_pred CC
Confidence 43
No 24
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.92 E-value=3.7e-08 Score=95.05 Aligned_cols=142 Identities=23% Similarity=0.331 Sum_probs=98.2
Q ss_pred ccCccceEEEecCCCcEEEEECC------------C-CeEEEeCC--CCee---EEceeccCCCcccCCcceeecCCCCE
Q 016318 129 ICGRPLGLRFDKKTGDLYIADAY------------F-GLMKVGPE--GGLA---TSLATEAEGVPLRFTNDLDIDDEGNV 190 (391)
Q Consensus 129 ~~g~P~gi~~d~~~g~L~V~d~~------------~-gl~~~d~~--~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~l 190 (391)
....|.+|++|+ +|+|||++.. . .|++++.. .|+. +.+.. .+..|++|++.++| |
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG-V 84 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC-E
Confidence 357899999998 8999999741 1 36666543 2332 33332 24579999999999 9
Q ss_pred EEEeCCCcccchhheeeecccCCCceEEEE-eCC-----CCeEEEeccCC--------CCcceEEEccCCCEEEEEeCC-
Q 016318 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKY-DPT-----TKQTTVLLRNL--------QFPNGLSLSKDKSFFVFCEGS- 255 (391)
Q Consensus 191 y~td~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~-----~~~~~~~~~~~--------~~~ngia~~~d~~~l~v~et~- 255 (391)
|+++. .+|+++ |.+ +++.+++.+++ ..+++++++|||. ||++...
T Consensus 85 yV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~ 144 (367)
T TIGR02604 85 YVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT 144 (367)
T ss_pred EEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC
Confidence 99874 367777 332 12444444332 3588999999997 9997652
Q ss_pred ------------------CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318 256 ------------------VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 256 ------------------~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~ 300 (391)
.++|+|++.+| ++.++++.--..|.++++|++|++|++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 145 LASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCceeccCCCccCcccccCceEEEEecCC---CeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 14689998766 4467776522358899999999999987643
No 25
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2.5e-06 Score=82.70 Aligned_cols=233 Identities=15% Similarity=0.208 Sum_probs=149.2
Q ss_pred CcceEEEccCCCeeEEEecCCE-EEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGR-ILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
+|.+++++++|..+|+...... +..++.. ...+. |. .......|.|+.+.+.+.++||.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~---------~~----------~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVT---------QS----------LSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceee---------ee----------ccCCCccccceeeCCCCCeEEEe
Confidence 8999999999966777664443 3333332 11111 00 00112679999998856669999
Q ss_pred ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
+.. +.+..+|..+.++..... -| ..|.+++++++| .+|++++.. .++.+..+|+.+++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~--vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~ 151 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIP--VG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNK 151 (381)
T ss_pred cCCCCeEEEEcCcccceeeEee--ec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCe
Confidence 876 559999966554332221 12 279999999987 899999641 25789999999887
Q ss_pred EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc--ceeecccCCCCCceEeCCCCC-EEEEEcCCC--
Q 016318 227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFAILPGYPDNVRTNEKGE-FWVAIHCRR-- 301 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~-- 301 (391)
..........|.+++++|+|+.+|+++...++|..++..+....+ ..........|..+.++++|+ +|++.....
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 766544444789999999999999999889999999966542221 000112224689999999999 888876641
Q ss_pred chhhhhhhcCccceeeeee-cCccceeeeEEeecCccceEEEEECCCCCEEEEEeCC
Q 016318 302 SLYSHLMALYPKIRHFLLK-LPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDS 357 (391)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~ 357 (391)
.+.. .....+..... ++. +.. ....+.++|+|+.+++.+..
T Consensus 232 ~v~~----id~~~~~v~~~~~~~----------~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 232 NVLK----IDTATGNVTATDLPV----------GSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eEEE----EeCCCceEEEecccc----------ccC-CCCceeECCCCCEEEEEecC
Confidence 2111 11111122211 111 111 24457788999988887655
No 26
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.86 E-value=1e-07 Score=92.07 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=100.6
Q ss_pred cchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCc
Q 016318 53 DKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR 132 (391)
Q Consensus 53 ~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 132 (391)
+++++.+.+.+..+ ..-..+.+|.+|. +|+++.+| +.+++..+.+.+...+.. -.-+
T Consensus 151 g~~~v~~~r~ll~d--~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~-------------------~dk~ 207 (671)
T COG3292 151 GREAVKDVRPLLKD--TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPP-------------------LDKA 207 (671)
T ss_pred hhhhccCccccccC--ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCc-------------------chhh
Confidence 34444444433332 2334678888888 99999997 899987633322211100 0011
Q ss_pred cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
...+..|. .++|||++ +.|++..++.+-++.-. ....+.....-+..|.+|++||++.
T Consensus 208 I~al~~d~-qg~LWVGT-dqGv~~~e~~G~~~sn~---~~~lp~~~I~ll~qD~qG~lWiGTe----------------- 265 (671)
T COG3292 208 INALIADV-QGRLWVGT-DQGVYLQEAEGWRASNW---GPMLPSGNILLLVQDAQGELWIGTE----------------- 265 (671)
T ss_pred HHHHHHHh-cCcEEEEe-ccceEEEchhhcccccc---CCCCcchheeeeecccCCCEEEeec-----------------
Confidence 23445565 79999996 67999999887333222 2222333455667788999999985
Q ss_pred CCceEEEEeCCCCeEEEecc----CCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 213 DTGRVLKYDPTTKQTTVLLR----NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~----~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.++.++....+.+..... +....|++..+.||+ +|+.. .++|++|...
T Consensus 266 --nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~a 317 (671)
T COG3292 266 --NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLTA 317 (671)
T ss_pred --ccceeEecCCCCccccccccCCccccccceeeccCCC-Eeeec--cCceEEEecc
Confidence 357777665555443322 223457888999999 99874 4678888643
No 27
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.84 E-value=1.3e-07 Score=94.37 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=126.0
Q ss_pred CcceEEEcc-CCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 70 GPESMAFDP-LGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
-|-+|.+|- +..++|++..+..|-+-... .-+++. ....+.|-||++|....++|
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~----------------------n~~L~SPEGiAVDh~~Rn~y 1083 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV----------------------NSGLISPEGIAVDHIRRNMY 1083 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccCCCCceee----------------------cccCCCccceeeeeccceee
Confidence 355666774 34466777777766665433 222221 11267899999997677899
Q ss_pred EEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 147 IADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 147 V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
-+|+... |-+-..++.+.+.+... .+..|.+|++|+ .|+||++|+. +.+-.|-+.+.++
T Consensus 1084 wtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG 1144 (1289)
T KOG1214|consen 1084 WTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDG 1144 (1289)
T ss_pred eeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCC
Confidence 9998643 44444444444544332 245799999998 7899999965 2234555555554
Q ss_pred CeEEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318 225 KQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 225 ~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~ 301 (391)
+..+++ .+++..|||+.|+|..+.|.+.+..++|+-....+|. ++..++.+| -+|-+|.-+.+. +|-+.+...
T Consensus 1145 ~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~L-qYPF~itsy~~~-fY~TDWk~n 1218 (1289)
T KOG1214|consen 1145 ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNL-QYPFSITSYADH-FYHTDWKRN 1218 (1289)
T ss_pred ccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhcc-cCceeeeecccc-ceeeccccC
Confidence 444444 4678899999999999999999999999999887763 555555554 378888887776 776766543
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.74 E-value=2e-06 Score=81.73 Aligned_cols=173 Identities=20% Similarity=0.266 Sum_probs=102.4
Q ss_pred ccCcceEEEccCCCeeEEEecCCEEEEEeCC-ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC---C
Q 016318 68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK---T 142 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~---~ 142 (391)
+..|.+|++.+||+ +|++...|+|++++.+ .. ..+..... . ......-.+|++++++ +
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~~----v------------~~~~~~gllgia~~p~f~~n 63 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLPE----V------------FADGERGLLGIAFHPDFASN 63 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-TT----T------------BTSTTBSEEEEEE-TTCCCC
T ss_pred CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceeccccc----c------------cccccCCcccceeccccCCC
Confidence 35799999999998 7888889999999955 32 23332211 0 0011234789999982 4
Q ss_pred CcEEEEECCC---------CeEEEeCCCC--e---eEEceeccCC--CcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318 143 GDLYIADAYF---------GLMKVGPEGG--L---ATSLATEAEG--VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 143 g~L~V~d~~~---------gl~~~d~~~g--~---~~~~~~~~~~--~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~ 206 (391)
+.|||+-... .|.++..+.+ . .+.+...... ........|++++||.||++...... .+...
T Consensus 64 ~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~ 141 (331)
T PF07995_consen 64 GYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ 141 (331)
T ss_dssp -EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC
T ss_pred CEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc
Confidence 7899986532 3666655433 2 2223222111 22335567999999999999633211 00011
Q ss_pred eecccCCCceEEEEeCCCC-------------eEEEeccCCCCcceEEEccC-CCEEEEEeCCCC---eEEEE
Q 016318 207 LVFSAEDTGRVLKYDPTTK-------------QTTVLLRNLQFPNGLSLSKD-KSFFVFCEGSVG---RLHKY 262 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~-------------~~~~~~~~~~~~ngia~~~d-~~~l~v~et~~~---~I~~~ 262 (391)
+ .....|.|+|+++.+. ..+++..++..|.+++++|. |+ ||++|-... .|.++
T Consensus 142 ~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i 211 (331)
T PF07995_consen 142 D--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRI 211 (331)
T ss_dssp S--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE
T ss_pred c--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEe
Confidence 1 1233688999997654 34566778889999999999 66 999986543 45554
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.70 E-value=1.7e-05 Score=75.12 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=121.1
Q ss_pred CEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC---------CCC-eEEEeC
Q 016318 90 GRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA---------YFG-LMKVGP 159 (391)
Q Consensus 90 g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~---------~~g-l~~~d~ 159 (391)
++|..+|.+..+..... ..+.+|.++ +++++..||||.. ... |..+|+
T Consensus 27 ~~v~ViD~~~~~v~g~i---------------------~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT---------------------DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred ceEEEEECCCCEEEEEE---------------------EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 78999998754443222 236789997 9987778999988 333 899999
Q ss_pred CCCeeEE-ceecc--CCCcccCCcceeecCCCC-EEEEeCCCc--cc-----chhhe---------eeecccCCCceEEE
Q 016318 160 EGGLATS-LATEA--EGVPLRFTNDLDIDDEGN-VYFTDSSTN--YQ-----RRNFM---------QLVFSAEDTGRVLK 219 (391)
Q Consensus 160 ~~g~~~~-~~~~~--~~~~~~~~~~l~~d~~G~-ly~td~~~~--~~-----~~~~~---------~~~~~~~~~g~l~~ 219 (391)
++.+... +.... ...-...++.+++++||+ +|+++.+.. .. .+..+ ......+.+..+.|
T Consensus 85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~ 164 (352)
T TIGR02658 85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC 164 (352)
T ss_pred ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe
Confidence 9876442 21110 111235677899999994 888874311 00 00111 01111111112222
Q ss_pred EeCCC--------CeEEE----eccC---CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEeccccCccceeecc-----c
Q 016318 220 YDPTT--------KQTTV----LLRN---LQFPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-----L 278 (391)
Q Consensus 220 ~d~~~--------~~~~~----~~~~---~~~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-----~ 278 (391)
.|.+. |+..+ +.+. .-+.+. .+.+ ||+.+|++.. +.|+.+++.+......+.+.. .
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccc
Confidence 22211 11111 1111 111222 3345 8888888744 899999987654333333221 1
Q ss_pred -CC-CCCc---eEeCCCCC-EEEEEcCCC---------chhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEE
Q 016318 279 -PG-YPDN---VRTNEKGE-FWVAIHCRR---------SLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVK 343 (391)
Q Consensus 279 -~g-~p~~---i~~d~~G~-lwva~~~~~---------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~ 343 (391)
.| .|.+ ++++++|+ +||++.... .+ .......++.+.+++.. ....-++
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V----~ViD~~t~kvi~~i~vG------------~~~~~ia 305 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL----FVVDAKTGKRLRKIELG------------HEIDSIN 305 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE----EEEECCCCeEEEEEeCC------------CceeeEE
Confidence 01 3444 99998876 999664321 11 11133455556655542 2345677
Q ss_pred ECCCCC-EEEEEeCCCC
Q 016318 344 YSPEGK-ILQVLEDSKG 359 (391)
Q Consensus 344 ~d~~g~-~~~~~~~~~g 359 (391)
++++|+ .++..+..++
T Consensus 306 vS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 306 VSQDAKPLLYALSTGDK 322 (352)
T ss_pred ECCCCCeEEEEeCCCCC
Confidence 888888 6665543333
No 30
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.64 E-value=1.2e-05 Score=77.41 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=96.7
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
+.++++.+||+.+|+.+.+|.|.++|....+.++.. ..+..|.|+++++++..+|+++.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------~~G~~~~~i~~s~DG~~~~v~n~ 97 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------KVGGNPRGIAVSPDGKYVYVANY 97 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------E-SSEEEEEEE--TTTEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------ecCCCcceEEEcCCCCEEEEEec
Confidence 456788999999999999999999998743333322 13677999999985455788887
Q ss_pred CC-CeEEEeCCCCeeE-Eceec-cC-CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 151 YF-GLMKVGPEGGLAT-SLATE-AE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 151 ~~-gl~~~d~~~g~~~-~~~~~-~~-~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
.. .+..+|.++.+.. .+... .. ..+-..+.+|...+....|+..- ...+.++..|..+.+
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPK 161 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSS
T ss_pred CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEecccc
Confidence 64 4888998876433 22211 11 01122344566666666565541 235788888865542
Q ss_pred E--EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 227 T--TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 227 ~--~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
. ....+-..+|.+..++|++++++++....+.|-.++.+
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 2 12234456899999999999999987777888888754
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.63 E-value=2.2e-05 Score=75.28 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=127.3
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
.|.-..-.++++.++|+.+|++++||.|..|+...-..... .-+.......+|+.+. .+.
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------~g~~h~nqI~~~~~~~-~~~ 376 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------AGKGHTNQIKGMAASE-SGE 376 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc-------------------ccccccceEEEEeecC-CCc
Confidence 45455677889999999999999999999998762111000 0011234566777775 688
Q ss_pred EEEEECCCCeEEEeCCCCeeEEce-eccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 145 LYIADAYFGLMKVGPEGGLATSLA-TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 145 L~V~d~~~gl~~~d~~~g~~~~~~-~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
|+.+.+...|.+++...+...... -.. ...|-++++.++|.+-+...- ..|..+.-.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~~------------------~~iv~l~~~ 434 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVACI------------------SDIVLLQDQ 434 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEec------------------CcEEEEecC
Confidence 998888778888876544322110 011 235779999998754443311 245555433
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCch
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSL 303 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~ 303 (391)
++-.+. .-...+.++|++||++.+.|. -..++|+.|.+.|.............+-+..|+.+++|.++++....+.+
T Consensus 435 ~~~~~~--~~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 435 TKVSSI--PIGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred Ccceee--ccccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 322221 223467899999999988887 44567999999986432222333456778899999999999887776665
Q ss_pred hhh
Q 016318 304 YSH 306 (391)
Q Consensus 304 ~~~ 306 (391)
.++
T Consensus 512 v~y 514 (603)
T KOG0318|consen 512 VLY 514 (603)
T ss_pred EEE
Confidence 543
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.56 E-value=0.00013 Score=65.81 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=115.2
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC-
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA- 150 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~- 150 (391)
..+.+.++++.++++..+|.|..|+.......... ......+.++.+++ +++++++..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--------------------~~~~~~i~~~~~~~-~~~~~~~~~~ 113 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--------------------TGHTSYVSSVAFSP-DGRILSSSSR 113 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--------------------eccCCcEEEEEEcC-CCCEEEEecC
Confidence 47888888887999999999999977621111110 01123567888887 567777766
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL 230 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 230 (391)
...+..+|..+++........ ...+..+++++++.++++... ++.+..||..+++....
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVAT 172 (289)
T ss_pred CCeEEEEECCCcEEEEEeccC----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEcccccccee
Confidence 445888888755433222211 124678888888877776532 46888899876654333
Q ss_pred ccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318 231 LRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298 (391)
Q Consensus 231 ~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~ 298 (391)
... ......++++++++.++++.. .+.|..+++... .....+...++....+..++++.++++..
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG--KCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EecCccccceEEECCCcCEEEEecC-CCcEEEEECCCC--ceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 322 235678999999987777744 778888886531 11122212233456788888877777654
No 33
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.56 E-value=3e-05 Score=81.34 Aligned_cols=193 Identities=18% Similarity=0.271 Sum_probs=123.8
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
.+..|-.++..+||. +|+|..+ -|.|+.++ ++.++....... -..-.-|+++|-+|.|
T Consensus 363 ~L~aPvala~a~DGS-l~VGDfN-yIRRI~~dg~v~tIl~L~~t~-------------------~sh~Yy~AvsPvdgtl 421 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGS-LIVGDFN-YIRRISQDGQVSTILTLGLTD-------------------TSHSYYIAVSPVDGTL 421 (1899)
T ss_pred eeeceeeEEEcCCCc-EEEccch-heeeecCCCceEEEEEecCCC-------------------ccceeEEEecCcCceE
Confidence 466899999999999 9999876 48888877 666665442110 1222467888888999
Q ss_pred EEEECC-CCeEEEeCCC-----CeeEEceec----------------cCCCcccCCcceeecCCCCEEEEeCCCcccchh
Q 016318 146 YIADAY-FGLMKVGPEG-----GLATSLATE----------------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRN 203 (391)
Q Consensus 146 ~V~d~~-~gl~~~d~~~-----g~~~~~~~~----------------~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~ 203 (391)
||.|.. +.|+++..-. +..+.++.. ....++.+|.+|++|++|++||+|..
T Consensus 422 yvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t------- 494 (1899)
T KOG4659|consen 422 YVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT------- 494 (1899)
T ss_pred EecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------
Confidence 999987 4488884321 122333210 01135789999999999999999954
Q ss_pred heeeecccCCCceEEEEeCCCCeEEEec--------------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 204 FMQLVFSAEDTGRVLKYDPTTKQTTVLL--------------------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~--------------------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
++-..|. +|.+..+. -.+.-|..+|++|=.+.|||-|+ +-|++++
T Consensus 495 ------------~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit 559 (1899)
T KOG4659|consen 495 ------------RIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRIT 559 (1899)
T ss_pred ------------EEEEecc-CceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEc
Confidence 2333332 23332221 12446899999996666999874 5777776
Q ss_pred eccc---cCccceeecccCC---------------CCCceEeCCCCCEEEEEcCCCch
Q 016318 264 LIGE---KAGNLEAFAILPG---------------YPDNVRTNEKGEFWVAIHCRRSL 303 (391)
Q Consensus 264 ~~g~---~~g~~~~~~~~~g---------------~p~~i~~d~~G~lwva~~~~~~~ 303 (391)
..+. -.|..-. .++++ .+..|++.++|-+||+...++.+
T Consensus 560 ~~~rV~Ii~GrP~h-C~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 560 VVHRVRIILGRPTH-CDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRI 616 (1899)
T ss_pred cCccEEEEcCCccc-cccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhh
Confidence 5432 0111000 01111 35789999999999998776553
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.56 E-value=0.00018 Score=64.86 Aligned_cols=184 Identities=18% Similarity=0.208 Sum_probs=111.4
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
...+++++++++.++++..+|.|..|+........... ........+.+.+++..++++.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--------------------GHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe--------------------cCCcceeEEEECCCCCEEEEEc
Confidence 44578899999988899989999988765211111000 0012224778887333566665
Q ss_pred CCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 AYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
....+..++.++++. ..+. .. ...+..+...++++++++... +|.+..||..+++..
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~ 128 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLT-GH----TSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCL 128 (289)
T ss_pred CCCeEEEEEcCcccceEEEe-cc----CCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEE
Confidence 555588888876432 2221 11 124667888888887777642 478999998866554
Q ss_pred Eecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEc
Q 016318 229 VLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH 298 (391)
Q Consensus 229 ~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~ 298 (391)
.... .......+++++++++++.+ ...+.|..+++...+ ....+....+....+..+++|+ ++++..
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEccccc--cceeEecCccccceEEECCCcCEEEEecC
Confidence 4333 23356789999998855544 446788888865321 1222222223466788889885 555443
No 35
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.53 E-value=1.6e-06 Score=86.79 Aligned_cols=178 Identities=17% Similarity=0.122 Sum_probs=123.2
Q ss_pred CCCCCCccchhccccc--eeccccccCcceEEEccCC-CeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCcc
Q 016318 46 LIPTVKDDKNLLQNSE--IKFLNQIQGPESMAFDPLG-RGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIAT 121 (391)
Q Consensus 46 ~~~~~~~~~~~l~~~~--~~~~~~~~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 121 (391)
...+.......|..+| .+.--++..||+||+|.-+ +++|+++...+|-.-..+ +.+....
T Consensus 1043 Dv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf---------------- 1106 (1289)
T KOG1214|consen 1043 DVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF---------------- 1106 (1289)
T ss_pred ecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE----------------
Confidence 3334333334454433 3445568899999999654 568888876655443332 1111111
Q ss_pred ccccccCccCccceEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCC
Q 016318 122 SYLKNEHICGRPLGLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSST 197 (391)
Q Consensus 122 ~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~ 197 (391)
....-.|.+|.+|+-.++||-.|+.+. |-+.+.++...+.+... .+..||++.+|+.. .|-+.|.+
T Consensus 1107 -----~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG- 1176 (1289)
T KOG1214|consen 1107 -----YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG- 1176 (1289)
T ss_pred -----eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecC-
Confidence 111456899999987899999999754 77777777666665443 24579999999965 68788866
Q ss_pred cccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
+.|+-+..++.-..+++...+++|-+|.-.. +.+|+++...++|..+++.+.
T Consensus 1177 ----------------t~rleC~~p~g~gRR~i~~~LqYPF~itsy~--~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1177 ----------------TKRLECTLPDGTGRRVIQNNLQYPFSITSYA--DHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred ----------------CcceeEecCCCCcchhhhhcccCceeeeecc--ccceeeccccCceEEeecccc
Confidence 5689888887666778889999999887544 449999999999999987653
No 36
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=2.9e-05 Score=70.06 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=103.5
Q ss_pred ccCcceEEEccCCCeeEEE-ecCCEEEEEeCC-ce-eEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 68 IQGPESMAFDPLGRGPYTG-VADGRILFWDGL-KW-TDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~-~~~g~I~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
...+.+|+++++.+.+|+- ...+.|+.++.+ ++ +.+.. ...+.+-||++.. ++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l----------------------~g~~D~EgI~y~g-~~~ 77 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL----------------------DGFGDYEGITYLG-NGR 77 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-----------------------SS-SSEEEEEE-S-TTE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC----------------------CCCCCceeEEEEC-CCE
Confidence 3458899999986656654 456889999876 22 22211 1146788999986 677
Q ss_pred EEEEECCCC-eEEEeC--CCCee-----EEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCc
Q 016318 145 LYIADAYFG-LMKVGP--EGGLA-----TSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 145 L~V~d~~~g-l~~~d~--~~g~~-----~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
+.+++...+ |+.++. .+..+ +.+........-....+++.|+. +++|++-.. ...
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~ 141 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPK 141 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CCh
Confidence 777775444 766665 33222 11211122122345789999996 567777521 123
Q ss_pred eEEEEeC--CCCeEEEec--------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC------
Q 016318 216 RVLKYDP--TTKQTTVLL--------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP------ 279 (391)
Q Consensus 216 ~l~~~d~--~~~~~~~~~--------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~------ 279 (391)
+|+.++. ......+.. ..+..+.+++++|....+|+-...+.+|..++.+|...+....-....
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence 5666664 222222211 123468899999998889999888999999987664221111111111
Q ss_pred CCCCceEeCCCCCEEEEEcC
Q 016318 280 GYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 280 g~p~~i~~d~~G~lwva~~~ 299 (391)
-.|.||++|++|++||+.-.
T Consensus 222 ~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp -SEEEEEE-TT--EEEEETT
T ss_pred CCccEEEECCCCCEEEEcCC
Confidence 14789999999999998643
No 37
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.52 E-value=2.6e-06 Score=82.54 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=90.4
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
.+...+.+|. .|+|||++ .+||++||..++++-.+...... ...+.++.|..|.+|+++.
T Consensus 165 ~~V~aLv~D~-~g~lWvgT-~dGL~~fd~~~gkalql~s~~~d---k~I~al~~d~qg~LWVGTd--------------- 224 (671)
T COG3292 165 TPVVALVFDA-NGRLWVGT-PDGLSYFDAGRGKALQLASPPLD---KAINALIADVQGRLWVGTD--------------- 224 (671)
T ss_pred ccceeeeeec-cCcEEEec-CCcceEEccccceEEEcCCCcch---hhHHHHHHHhcCcEEEEec---------------
Confidence 3445788888 89999995 67999999999877665432111 3578889999999999984
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcce----EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CCCc
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNG----LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YPDN 284 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ng----ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p~~ 284 (391)
-+++.+++++-+..-. +...|.+ +.-+.+|. +|++ |. +.++|+.+.......... ...++ ...+
T Consensus 225 ----qGv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiG-Te-nGl~r~~l~rq~Lq~~~~-~~~l~~S~vns 294 (671)
T COG3292 225 ----QGVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIG-TE-NGLWRTRLPRQGLQIPLS-KMHLGVSTVNS 294 (671)
T ss_pred ----cceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEe-ec-ccceeEecCCCCcccccc-ccCCccccccc
Confidence 4788888876333222 2233332 33455676 8887 43 456777654321111100 01112 2356
Q ss_pred eEeCCCCCEEEEEcCCC
Q 016318 285 VRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 285 i~~d~~G~lwva~~~~~ 301 (391)
+..|.+|++|+++....
T Consensus 295 L~~D~dGsLWv~t~~gi 311 (671)
T COG3292 295 LWLDTDGSLWVGTYGGI 311 (671)
T ss_pred eeeccCCCEeeeccCce
Confidence 88999999999987753
No 38
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.52 E-value=9.7e-06 Score=79.14 Aligned_cols=186 Identities=15% Similarity=0.181 Sum_probs=109.2
Q ss_pred cceeccccccCcceEEEccCCCeeEEEec-CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVA-DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (391)
Q Consensus 60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi 136 (391)
++.+.. .+..|.+|++.+||+ +|++.. .|+|++++.. ..+.+..... . ......+-++||
T Consensus 22 ~~~va~-GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~----v-----------~~~~ge~GLlgl 84 (454)
T TIGR03606 22 KKVLLS-GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPE----I-----------VNDAQHNGLLGL 84 (454)
T ss_pred EEEEEC-CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCc----e-----------eccCCCCceeeE
Confidence 344434 488999999999998 777777 5999999765 2222211110 0 000013558999
Q ss_pred EEecC------CCcEEEEEC----------CCCeEEEeCC--CCe---eEEceeccCCCcccCCcceeecCCCCEEEEeC
Q 016318 137 RFDKK------TGDLYIADA----------YFGLMKVGPE--GGL---ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (391)
Q Consensus 137 ~~d~~------~g~L~V~d~----------~~gl~~~d~~--~g~---~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~ 195 (391)
+++++ ++.|||+-+ ...|.++..+ +.. .+.+..........+-..|++++||.|||+..
T Consensus 85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 99863 246899742 2237776543 211 12222222111123456789999999999863
Q ss_pred CCcccc-hhh-eeee-------------cccCCCceEEEEeCCCC-----------eEEEeccCCCCcceEEEccCCCEE
Q 016318 196 STNYQR-RNF-MQLV-------------FSAEDTGRVLKYDPTTK-----------QTTVLLRNLQFPNGLSLSKDKSFF 249 (391)
Q Consensus 196 ~~~~~~-~~~-~~~~-------------~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~ngia~~~d~~~l 249 (391)
...... .+. .... -.....|.|+|+|++.. ..+++.-+++.|.|++++|+++ |
T Consensus 165 D~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-L 243 (454)
T TIGR03606 165 EQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-L 243 (454)
T ss_pred CCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-E
Confidence 321100 000 0000 00123578999998753 2356677888999999999887 9
Q ss_pred EEEeCCC---CeEEEEE
Q 016318 250 VFCEGSV---GRLHKYW 263 (391)
Q Consensus 250 ~v~et~~---~~I~~~~ 263 (391)
|++|-.. ..|.++.
T Consensus 244 w~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 244 YASEQGPNSDDELNIIV 260 (454)
T ss_pred EEEecCCCCCcEEEEec
Confidence 9998654 3455553
No 39
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00012 Score=72.37 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=82.5
Q ss_pred eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
...+++++..|+++.... .|+.+|.++++.+.+.... ......++++||+ |+++...
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~spDG~~l~f~sd~-------------- 312 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-----GIDTEPTWAPDGKSIYFTSDR-------------- 312 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC--------------
Confidence 457888444565543332 3999999988877664321 1224567889986 5555421
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+...++.+|.++++.+.+.........++++|||+.++++...+ .+|+.+++++. +...+... +...+...+
T Consensus 313 -~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~~~~~p~~s 387 (433)
T PRK04922 313 -GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-SLDESPSFA 387 (433)
T ss_pred -CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-CCCCCceEC
Confidence 112368999988887766543333444689999999888874432 36888887552 23333221 123346778
Q ss_pred CCCCEE
Q 016318 289 EKGEFW 294 (391)
Q Consensus 289 ~~G~lw 294 (391)
++|+..
T Consensus 388 pdG~~i 393 (433)
T PRK04922 388 PNGSMV 393 (433)
T ss_pred CCCCEE
Confidence 888843
No 40
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=0.00016 Score=71.77 Aligned_cols=134 Identities=11% Similarity=0.124 Sum_probs=81.7
Q ss_pred eEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
...+++++..|+++....| |+.+|.++++.+.+.... ......+.++||+ |+++...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~-------------- 326 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSER-------------- 326 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECC--------------
Confidence 4578884445765433333 999999988877664321 1234567788885 6665421
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+...++++|.++++.+.+........+.+++|||++++++...+ .+|+++++++. +...+.. .........+
T Consensus 327 -~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~-~~~d~~ps~s 401 (448)
T PRK04792 327 -GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTS-TRLDESPSVA 401 (448)
T ss_pred -CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccC-CCCCCCceEC
Confidence 123479999998888776643323334578999999998875433 36888887653 2232221 1112234677
Q ss_pred CCCC
Q 016318 289 EKGE 292 (391)
Q Consensus 289 ~~G~ 292 (391)
++|+
T Consensus 402 pdG~ 405 (448)
T PRK04792 402 PNGT 405 (448)
T ss_pred CCCC
Confidence 7887
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.44 E-value=0.0002 Score=71.68 Aligned_cols=188 Identities=18% Similarity=0.225 Sum_probs=126.7
Q ss_pred ccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 68 IQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
+..-.+++..|||..+.+|..||+|-.|+.. .+-.+. +. ++ .....++.|.. .|+..
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-Ft-------------------eH-ts~Vt~v~f~~-~g~~l 407 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-FT-------------------EH-TSGVTAVQFTA-RGNVL 407 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-ec-------------------cC-CCceEEEEEEe-cCCEE
Confidence 5556789999999999999999999999887 332222 11 12 23356889998 78877
Q ss_pred EEECCCC-eEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 147 IADAYFG-LMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 147 V~d~~~g-l~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
++..-.| +-.+|.... ..+++..+. ......+++|+.|.+.++.+-. .=.|+.|+-+|
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~----p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qT 467 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQT 467 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCC----ceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeec
Confidence 7766656 777776532 334443322 2356789999999988886432 22588999999
Q ss_pred CeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEcCC
Q 016318 225 KQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIHCR 300 (391)
Q Consensus 225 ~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~ 300 (391)
|+..-+..+-..| .+++++|+++ ++++.+....|.++++-+. .++.|.+.- +.-.-++++.|+|. +-|++-.+
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~i-~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLEI-RSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEee-ccceeEEEEcCCCCeEEEEEecc
Confidence 9887776665555 5899999999 6666677777777766542 344554431 11234577788887 66776553
No 42
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.44 E-value=1.6e-06 Score=64.44 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=60.6
Q ss_pred cceeecCCCCEEEEeCCCcccch-hheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318 180 NDLDIDDEGNVYFTDSSTNYQRR-NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 180 ~~l~~d~~G~ly~td~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
|+|+.-....+|+|... .++.. -.+.+.+-+-+-+.++.||+ ++.+++.+++.+||||+++||+++|||++..++.
T Consensus 1 NDIvavG~~sFy~TNDh-yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDH-YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CCEEEECcCcEEEECch-hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 45655555588888642 12211 11223334456778999997 4688889999999999999999999999999999
Q ss_pred EEEEEec
Q 016318 259 LHKYWLI 265 (391)
Q Consensus 259 I~~~~~~ 265 (391)
|..|...
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 9999753
No 43
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00036 Score=66.81 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=105.9
Q ss_pred ccceeccccccCcceEEEccCCCeeEEEecC-CEEEEEeCCc-e----e--EEEeecCCCcccCCCCCCccccccccCcc
Q 016318 59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVAD-GRILFWDGLK-W----T--DFAFTSNNRSELCNPKPIATSYLKNEHIC 130 (391)
Q Consensus 59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~~-~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (391)
+++.+..+ +..|.+++.-++|. +.+.... |.+..+.... . . ...... .... ..............
T Consensus 58 ~~~~~a~g-Le~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~-~~~G----ll~~al~~~fa~~~ 130 (399)
T COG2133 58 SVEVVAQG-LEHPWGLARLPDGV-LLVTERPTGRLRLISDGGSASPPVSTVPIVLLR-GQGG----LLDIALSPDFAQGR 130 (399)
T ss_pred eccccccc-ccCchhheecCCce-EEEEccCCccEEEecCCCcccccccccceEEec-cCCC----ccceEecccccccc
Confidence 34444455 88999999999995 5554444 7776664331 0 0 000000 0000 00000011222234
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCee---EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccch-hhe-
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLA---TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR-NFM- 205 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~---~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~-~~~- 205 (391)
..|+++++. .+.+|+++. ..+.+++....++ +.+.....+....+...|++++||+||++.-+...... +..
T Consensus 131 ~~~~~~a~~--~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~ 207 (399)
T COG2133 131 LVYFGISEP--GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNV 207 (399)
T ss_pred eeeeEEEee--cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcc
Confidence 568888886 477888863 3577776221222 22223333323457788999999999999754311110 000
Q ss_pred --e-eecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeE
Q 016318 206 --Q-LVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRL 259 (391)
Q Consensus 206 --~-~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I 259 (391)
. .+++. ....++..|..+...+++..++..|.|++++|....||++|-....+
T Consensus 208 ~~~Gk~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 208 SLAGKVLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred ccccceeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 0 01111 12245566666666777788889999999999844499998776555
No 44
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00035 Score=69.09 Aligned_cols=139 Identities=18% Similarity=0.123 Sum_probs=86.4
Q ss_pred cceEEEecCCCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318 133 PLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~ 208 (391)
....++++++..|...... ..|+.+|..+++.+.+... .+ .....++.+||+ |+++.+.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~------------ 266 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ------------ 266 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec------------
Confidence 3456788844445443322 2499999998877665422 22 234567889995 5555422
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR 286 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~ 286 (391)
.++..|+.+|.++++.+.+..........+++|||+.++++... ...|+++++++. +.+.+....+......
T Consensus 267 ---~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 267 ---GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---NPRRISFGGGRYSTPV 340 (435)
T ss_pred ---CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---CeEEeecCCCcccCeE
Confidence 12356999999998887776544445568899999988776433 247999987663 2222222223334567
Q ss_pred eCCCCCEE
Q 016318 287 TNEKGEFW 294 (391)
Q Consensus 287 ~d~~G~lw 294 (391)
.+++|+..
T Consensus 341 ~SpdG~~i 348 (435)
T PRK05137 341 WSPRGDLI 348 (435)
T ss_pred ECCCCCEE
Confidence 78888743
No 45
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.38 E-value=1.2e-05 Score=75.22 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhccCCCCCCccCCCCCceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCeeEEE
Q 016318 7 LGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTG 86 (391)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~ 86 (391)
+.+++++++++.-+.+..+...-....+.+.....+. .+++.+..+|.+..+...+|+.+.+..+..++|++
T Consensus 11 i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g 82 (376)
T KOG1520|consen 11 IFLFLAVIILLYLLSGSSIAGSPDDRLFSKLPLLGKL--------IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTG 82 (376)
T ss_pred HHHHHHHHHhhhccCcccccCCchhcccCCCCccccc--------ccccccCChhhheecccCCCceEEEECCceEEEec
Confidence 4445545555444445555555444456655443332 34454555555554444444444444233348999
Q ss_pred ecCCEEEEEeCC---ceeEEEe-ecCCCcccCC---------------------------CCCCccccccccCccCcc--
Q 016318 87 VADGRILFWDGL---KWTDFAF-TSNNRSELCN---------------------------PKPIATSYLKNEHICGRP-- 133 (391)
Q Consensus 87 ~~~g~I~~~~~~---~~~~~~~-~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~P-- 133 (391)
..+|.+-+.+.. ....... ........|. +.+..+..+ ..+..|+|
T Consensus 83 ~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l-~~~~~G~~~k 161 (376)
T KOG1520|consen 83 NDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELL-ADEAEGKPFK 161 (376)
T ss_pred cCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceec-cccccCeeee
Confidence 989988887662 0000000 0000111231 111100000 11123444
Q ss_pred --ceEEEecCCCcEEEEECCC-----------------C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEE
Q 016318 134 --LGLRFDKKTGDLYIADAYF-----------------G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYF 192 (391)
Q Consensus 134 --~gi~~d~~~g~L~V~d~~~-----------------g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~ 192 (391)
.++.+++ +|.+|..|+.. | ++++|+.|...+.+.. .+.+||+++..+|+. +.+
T Consensus 162 f~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 162 FLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred ecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEE
Confidence 3777887 88999987532 2 7777777766555543 367999999999986 555
Q ss_pred EeCCCcccchhheeeecccCCCceEEEEeCCC---CeEEEeccCC-CCcceEEEccCCCEEEEEeC
Q 016318 193 TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT---KQTTVLLRNL-QFPNGLSLSKDKSFFVFCEG 254 (391)
Q Consensus 193 td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~-~~~ngia~~~d~~~l~v~et 254 (391)
+.++ ..|+.+|=.+. |+.+++.+++ .+|..|..+++|+ .||+-.
T Consensus 236 ~Et~-----------------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~ 283 (376)
T KOG1520|consen 236 AETT-----------------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVALH 283 (376)
T ss_pred Eeec-----------------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEEe
Confidence 5543 45777776544 3447777755 5899999999999 777754
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.0003 Score=69.41 Aligned_cols=137 Identities=9% Similarity=0.076 Sum_probs=82.6
Q ss_pred eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
...+++++..|++..... .|+.+|.++++.+.+.... + .......++||+ |+++...
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~----~~~~~~~spDg~~i~f~s~~-------------- 307 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-A----IDTEPFWGKDGRTLYFTSDR-------------- 307 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC-C----CcCCeEECCCCCEEEEEECC--------------
Confidence 457888444565543332 3999999998877664321 1 123456788885 7666422
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+...|+.++..+++.+.+..........+++|||+.++++.... ..|+++++++. +.+.+.. .+......++
T Consensus 308 -~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~-~~~~~~p~~s 382 (430)
T PRK00178 308 -GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTD-TSLDESPSVA 382 (430)
T ss_pred -CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccC-CCCCCCceEC
Confidence 123479999988888766643333334568999999998876433 35888887652 2333322 1222345678
Q ss_pred CCCCEEE
Q 016318 289 EKGEFWV 295 (391)
Q Consensus 289 ~~G~lwv 295 (391)
++|+..+
T Consensus 383 pdg~~i~ 389 (430)
T PRK00178 383 PNGTMLI 389 (430)
T ss_pred CCCCEEE
Confidence 8887443
No 47
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00059 Score=67.37 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=86.7
Q ss_pred cceEEEecCCCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318 133 PLGLRFDKKTGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~ 208 (391)
....++++++..|...... ..|+.++.++|+.+.+... .+ ....+++++||+ |+++.+.
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~------------ 263 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK------------ 263 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC------------
Confidence 3467888844445333222 2388999988877665422 11 123578899995 7666432
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR 286 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~ 286 (391)
.+...|+.+|.++++.+.+..........+++|||+.|+++... ..+|+++++++. +.+.+....+......
T Consensus 264 ---~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~~~~~~~~~~ 337 (429)
T PRK03629 264 ---TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDAD 337 (429)
T ss_pred ---CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEeecCCCCccCEE
Confidence 11236999999999888776554455678999999977665432 247888887653 2222222222334577
Q ss_pred eCCCCCEEE
Q 016318 287 TNEKGEFWV 295 (391)
Q Consensus 287 ~d~~G~lwv 295 (391)
++++|+..+
T Consensus 338 ~SpDG~~Ia 346 (429)
T PRK03629 338 VSSDGKFMV 346 (429)
T ss_pred ECCCCCEEE
Confidence 889998443
No 48
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.38 E-value=5e-05 Score=66.53 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=117.2
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.--++.|..+|+.+|+|+.||.+-.||.... .|.. ..+. ..-...+.+++..++|+++|
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR--------~~~~-~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQR--------NYQH-NSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCc------------ccch--------hccC-CCCcceEEecCCcceEEeec
Confidence 3467888899999999999998888876410 0110 1111 12234678888677899999
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV 229 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 229 (391)
....|...|...........+.+ ..+...+.+++||.+.++..+ .|+.++++.-+++...
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPED---DTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCCcEEEEEccCCccccccCCCC---CcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccc
Confidence 77779999988765443322222 246788999999988777643 5888888876654433
Q ss_pred ec---cCCC----CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCC
Q 016318 230 LL---RNLQ----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 230 ~~---~~~~----~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~ 301 (391)
.. ..++ ..-...+|||+++|.-+ +....++.++.++- -+.|...+ -.+.-.+-+++.||.+.|+..+..
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~-ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATC-SSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEee-cCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 22 2222 22345689999955443 55556666665543 11122111 123455678889998777655543
No 49
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00037 Score=68.78 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=80.4
Q ss_pred ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318 134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~ 209 (391)
...++++++..|+++.... .|+.+|.+++..+.+... .+ .......++||+ |+++...
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~------------- 304 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR------------- 304 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC-------------
Confidence 3567888444565543332 399999888776665332 11 223457888985 6665321
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
.+.-.++.++..+++.+.+..........+++|||++|+++...+ ..|+.+++.+. +...+.. .+.......
T Consensus 305 --~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~-~~~~~~p~~ 378 (427)
T PRK02889 305 --GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTD-TTRDESPSF 378 (427)
T ss_pred --CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccC-CCCccCceE
Confidence 112368888877776655542222334578999999887764433 36888887653 2222222 122345678
Q ss_pred CCCCCEE
Q 016318 288 NEKGEFW 294 (391)
Q Consensus 288 d~~G~lw 294 (391)
+++|+..
T Consensus 379 spdg~~l 385 (427)
T PRK02889 379 APNGRYI 385 (427)
T ss_pred CCCCCEE
Confidence 8888743
No 50
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.33 E-value=0.00019 Score=65.73 Aligned_cols=209 Identities=16% Similarity=0.187 Sum_probs=121.9
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
.+..|=+++..+ +.+|.++.. +|+++... ..-.-.. ..+....|- -|+. ......-..+.|++ . ++++
T Consensus 47 ~F~r~MGl~~~~--~~l~~~t~~-qiw~f~~~~n~l~~~~-~~~~~D~~y---vPr~--~~~TGdidiHdia~-~-~~~l 115 (335)
T TIGR03032 47 TFPRPMGLAVSP--QSLTLGTRY-QLWRFANVDNLLPAGQ-THPGYDRLY---VPRA--SYVTGDIDAHDLAL-G-AGRL 115 (335)
T ss_pred ccCccceeeeeC--CeEEEEEcc-eeEEcccccccccccc-cCCCCCeEE---eeee--eeeccCcchhheee-c-CCcE
Confidence 356788888864 348998876 48888211 1000000 000000010 0000 00001223577888 3 6788
Q ss_pred EEEECC-CCeEEEeCCCCeeEEceec-----cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318 146 YIADAY-FGLMKVGPEGGLATSLATE-----AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK 219 (391)
Q Consensus 146 ~V~d~~-~gl~~~d~~~g~~~~~~~~-----~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~ 219 (391)
|+.+.. ..|..+++.-. ......+ .....--..|++|.....=-|+|.-++.-...-|. +.+.+|+++
T Consensus 116 ~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v- 189 (335)
T TIGR03032 116 LFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV- 189 (335)
T ss_pred EEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-
Confidence 777665 56888887643 3333221 11112246789998754457877533211001111 223355655
Q ss_pred EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEEc
Q 016318 220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAIH 298 (391)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~~ 298 (391)
+|..++ +++.+++.+|.+-.+. ||+ ||+++...+.+.+++.+ .|+.+..+.+||+|.|+.+. |. ++|++.
T Consensus 190 idv~s~--evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~---~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 190 IDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQ---AGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCC---CCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 566655 4667899999988876 666 99999999999999854 36788888999999999998 66 556666
Q ss_pred CCC
Q 016318 299 CRR 301 (391)
Q Consensus 299 ~~~ 301 (391)
..|
T Consensus 261 k~R 263 (335)
T TIGR03032 261 KLR 263 (335)
T ss_pred ccc
Confidence 543
No 51
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.30 E-value=1.7e-05 Score=68.92 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred cCccceEEEecCCCcEEEEECCC-Ce--EEEeCCCCeeEE---cee--ccCCCcccCCcceeecCCCCEEEEeCCCcccc
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYF-GL--MKVGPEGGLATS---LAT--EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQR 201 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~-gl--~~~d~~~g~~~~---~~~--~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~ 201 (391)
.+-|.|+++|.+....|+.|+.+ .+ +.+|-.||.+.. +.. .........|.++++|.+|+||++..+
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----- 231 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----- 231 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----
Confidence 46788999997667789998864 47 566677875432 111 111112358999999999999999966
Q ss_pred hhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEc-cCCCEEEEE
Q 016318 202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLS-KDKSFFVFC 252 (391)
Q Consensus 202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~-~d~~~l~v~ 252 (391)
.|+++++||.+|+.-.-. -.-......|+. ++-+.+|++
T Consensus 232 ------------g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 232 ------------GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ------------CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 479999999999764321 112233445553 333445554
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00053 Score=67.86 Aligned_cols=176 Identities=9% Similarity=0.024 Sum_probs=103.8
Q ss_pred ceEEEccCCCeeEEEec---CCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 72 ESMAFDPLGRGPYTGVA---DGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~---~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
.+..+.+||+.++..+. +..|+.++.. ....+... .+......+++++..|+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----------------------~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----------------------PGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----------------------CCcccCcEECCCCCEEE
Confidence 35678889985544332 3578888765 22222111 11223457888444555
Q ss_pred EEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 147 IADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 147 V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
++... ..|+.+|.+++..+.+.... + .......++||+ |+++... .+...|+.+|.
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~ 321 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTTRLTDSP-A----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNA 321 (435)
T ss_pred EEEecCCCceEEEEECCCCceEEccCCC-C----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEEC
Confidence 44332 23999999988877664321 1 234467788885 6665422 12347999998
Q ss_pred CCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE
Q 016318 223 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW 294 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw 294 (391)
++++.+.+.......+..+++|||+.|+++.... .+|+.+++++. ....+.. .....+...+++|+..
T Consensus 322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~p~~spDG~~i 391 (435)
T PRK05137 322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEGPTWAPNGRVI 391 (435)
T ss_pred CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCCCeECCCCCEE
Confidence 8887777654333334578999999888765432 47888887553 2222222 1234567888888843
No 53
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00081 Score=66.39 Aligned_cols=138 Identities=11% Similarity=0.077 Sum_probs=84.4
Q ss_pred eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
...+++++..|+++.... .|+.+|.++++.+.+.... .........+||+ |+++...
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~-------------- 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ-------------- 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECCCCCEEEEEeCC--------------
Confidence 457888444566553322 3999999988877664321 1235677889986 5555421
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+.-.|+.+|.++++.+.+..........+++|||++++++...+ ..|+.+++++. +.+.+.. ...-.+..++
T Consensus 308 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~-~~~~~~p~~S 382 (429)
T PRK03629 308 -AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLTD-TFLDETPSIA 382 (429)
T ss_pred -CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEeCC-CCCCCCceEC
Confidence 112378999998887776654333445688999999887764433 46888887653 2333322 1112345778
Q ss_pred CCCCEEEE
Q 016318 289 EKGEFWVA 296 (391)
Q Consensus 289 ~~G~lwva 296 (391)
+||+..+.
T Consensus 383 pDG~~i~~ 390 (429)
T PRK03629 383 PNGTMVIY 390 (429)
T ss_pred CCCCEEEE
Confidence 88884443
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.002 Score=58.41 Aligned_cols=186 Identities=13% Similarity=0.110 Sum_probs=112.1
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
..+++|.++.+|..+.+++.|..+..++.. ....+.... -| +.-++|-....++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----------------------yG-~~~~~Fth~~~~~ 71 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----------------------YG-VDLACFTHHSNTV 71 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----------------------cc-ccEEEEecCCceE
Confidence 467899999999988888888888888765 222221110 01 2223443324444
Q ss_pred EEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 146 YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 146 ~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
.-+... .-|.-++..+++.-++ +.|- -...+.|.+.|-+..+++.+- +..+.-||.+
T Consensus 72 i~sStk~d~tIryLsl~dNkylRY---F~GH-~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR 130 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRY---FPGH-KKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLR 130 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEE---cCCC-CceEEEEEecCCCCeEEeccc-----------------CCeEEeeEec
Confidence 444332 2366666655543322 2221 246889999998899998754 4577888877
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCC--CCCceEeCCCCC-EEEEEcC
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPG--YPDNVRTNEKGE-FWVAIHC 299 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g--~p~~i~~d~~G~-lwva~~~ 299 (391)
..+...+.. +..+.-+|++|+|- ++.+...+..|..|++.--.+|-+..|.- .+- .-..|.++++|. +.+++..
T Consensus 131 ~~~cqg~l~-~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 131 VKKCQGLLN-LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCCCceEEe-cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 665555443 23444578999996 44444555589999876433444555531 111 124689999998 5566555
Q ss_pred C
Q 016318 300 R 300 (391)
Q Consensus 300 ~ 300 (391)
+
T Consensus 209 s 209 (311)
T KOG1446|consen 209 S 209 (311)
T ss_pred C
Confidence 4
No 55
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.001 Score=65.80 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=85.7
Q ss_pred ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318 134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~ 209 (391)
...++++++..|+.+.... .|+.+|..+++.+.+... .+ .....++++||+ |+++.+.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~------------- 268 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR------------- 268 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC-------------
Confidence 3557777444565554332 299999998876665322 22 123568889995 6665432
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
.++..|+.+|.++++.+.+..........+++|||+.++++.... ..|+++++++. +.+.+..........+.
T Consensus 269 --~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 269 --DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLTFQGNYNARASV 343 (433)
T ss_pred --CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEeecCCCCccCEEE
Confidence 123479999999998877655433445678999999887764332 36888887653 22222211123445788
Q ss_pred CCCCCEEE
Q 016318 288 NEKGEFWV 295 (391)
Q Consensus 288 d~~G~lwv 295 (391)
+++|+..+
T Consensus 344 SpDG~~Ia 351 (433)
T PRK04922 344 SPDGKKIA 351 (433)
T ss_pred CCCCCEEE
Confidence 89998433
No 56
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.27 E-value=0.00017 Score=68.46 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=80.3
Q ss_pred CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC---------CCCe
Q 016318 188 GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG---------SVGR 258 (391)
Q Consensus 188 G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et---------~~~~ 258 (391)
.++|++|.+. -...+++..+|.+++++.-.......|+++ ++||++.+|++++ ....
T Consensus 13 ~~v~V~d~~~-------------~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~ 78 (352)
T TIGR02658 13 RRVYVLDPGH-------------FAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDY 78 (352)
T ss_pred CEEEEECCcc-------------cccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCE
Confidence 3688888541 011279999999998876666666799997 9999999999999 7788
Q ss_pred EEEEEeccccCccceeecc--cCC--------CCCceEeCCCCC-EEEEEcC-CCchhhhhhhcCccceeeeeecCccc
Q 016318 259 LHKYWLIGEKAGNLEAFAI--LPG--------YPDNVRTNEKGE-FWVAIHC-RRSLYSHLMALYPKIRHFLLKLPISA 325 (391)
Q Consensus 259 I~~~~~~g~~~g~~~~~~~--~~g--------~p~~i~~d~~G~-lwva~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~ 325 (391)
|..++.+.. +...+ +|. .|..+.++++|+ +||+... ...+ .......++++..++.|.
T Consensus 79 V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V----~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 79 VEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV----GVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred EEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE----EEEECCCCcEEEEEeCCC
Confidence 999986532 22222 222 344899999998 8887655 2222 112445778888888776
No 57
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.0017 Score=63.81 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=80.1
Q ss_pred EEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeeccc
Q 016318 136 LRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 136 i~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
..+++++..|.+..... .|+.++.++++.+.+... .+ .-......+|| .|+|+...
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~-~~----~d~~p~~SPDG~~I~F~Sdr--------------- 297 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY-PG----IDVNGNFVEDDKRIVFVSDR--------------- 297 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC-CC----ccCccEECCCCCEEEEEECC---------------
Confidence 45777444565543322 399999988887776432 11 11123578898 58887632
Q ss_pred CCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--------CeEEEEEeccccCccceeecccCCCCC
Q 016318 212 EDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--------GRLHKYWLIGEKAGNLEAFAILPGYPD 283 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--------~~I~~~~~~g~~~g~~~~~~~~~g~p~ 283 (391)
.+...|+++|.++++.+.+...... + ..++|||+.+.++.... .+|+.+++++. ..+.+... +.-.
T Consensus 298 ~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~-~~~~ 371 (419)
T PRK04043 298 LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN-GVNQ 371 (419)
T ss_pred CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC-CCcC
Confidence 1234799999999988666533222 2 48999999887765432 47888887653 23333221 2222
Q ss_pred ceEeCCCCC
Q 016318 284 NVRTNEKGE 292 (391)
Q Consensus 284 ~i~~d~~G~ 292 (391)
....+++|+
T Consensus 372 ~p~~SPDG~ 380 (419)
T PRK04043 372 FPRFSSDGG 380 (419)
T ss_pred CeEECCCCC
Confidence 356788887
No 58
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0016 Score=64.32 Aligned_cols=137 Identities=10% Similarity=0.074 Sum_probs=82.4
Q ss_pred eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
..++++++..|+++.... .|+.+|..+++.+.+... .+ .....+..+||+ |+++.+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~-------------- 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR-------------- 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc--------------
Confidence 557888444565554332 299999998876665322 22 223578889985 6665422
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+.-.|+.+|.++++.+.+..........+++|||+.++++... ...|+++++.+. +.+......++..+..++
T Consensus 261 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 261 -DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVTFTGSYNTSPRIS 336 (427)
T ss_pred -CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEecCCCCcCceEEC
Confidence 12347999998888777665433334457899999987765332 346888876553 222221111223356788
Q ss_pred CCCCEE
Q 016318 289 EKGEFW 294 (391)
Q Consensus 289 ~~G~lw 294 (391)
++|+..
T Consensus 337 pDG~~I 342 (427)
T PRK02889 337 PDGKLL 342 (427)
T ss_pred CCCCEE
Confidence 888843
No 59
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.22 E-value=0.0013 Score=64.46 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=100.7
Q ss_pred eEEEccCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 73 SMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
+.++++||+.++..... ..|+.++.. ....+... .+....+++++++..|++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----------------------~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----------------------PGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----------------------CCCccceEECCCCCEEEE
Confidence 34578889866555433 467777765 22222110 122334678884445766
Q ss_pred EECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 148 ADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 148 ~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
+.... .|+.++..++..+.+.... + ........++|+ |+++... .+...|+.+|..
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~~~l~~~~-~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~ 310 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQLTRLTNGP-G----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDAD 310 (417)
T ss_pred EECCCCCccEEEEECCCCCEEECCCCC-C----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECC
Confidence 54332 3999999888766654221 1 122446677885 5555421 123479999988
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 292 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~ 292 (391)
+++.+.+.........++++||++.++++.... .+|+.+++.+ +..+.+.. .+......++++|+
T Consensus 311 ~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~-~~~~~~p~~spdg~ 377 (417)
T TIGR02800 311 GGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTD-TGLDESPSFAPNGR 377 (417)
T ss_pred CCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccC-CCCCCCceECCCCC
Confidence 887766654445556788999999888875533 3788888665 22233221 11223446777776
No 60
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.0023 Score=63.55 Aligned_cols=138 Identities=10% Similarity=0.062 Sum_probs=84.2
Q ss_pred ceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318 134 LGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~ 209 (391)
....+++++..|+...... .|+.+|..+++.+.+... .+ .....+.++||+ |+++.+.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~------------- 282 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK------------- 282 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC-------------
Confidence 3467888444454433222 399999998876655322 21 123567889986 6665422
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
.+...|+.+|.++++.+.+..........+++||+++++++... ...|+++++++. +.+..........+.+.
T Consensus 283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~~g~~~~~~~~ 357 (448)
T PRK04792 283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTFEGEQNLGGSI 357 (448)
T ss_pred --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEecCCCCCcCeeE
Confidence 12346999999999887776544445567899999988776542 357888887653 22222111112234577
Q ss_pred CCCCCEE
Q 016318 288 NEKGEFW 294 (391)
Q Consensus 288 d~~G~lw 294 (391)
+++|+..
T Consensus 358 SpDG~~l 364 (448)
T PRK04792 358 TPDGRSM 364 (448)
T ss_pred CCCCCEE
Confidence 8888743
No 61
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.21 E-value=0.00025 Score=63.92 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=97.7
Q ss_pred cCcceEEEccCCCeeEEEec-CCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVA-DGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
...|+|++- +++ +|.=++ .+..+.+|.+.++...... . .+.-.||+.| +..||+
T Consensus 90 ~FgEGit~~-~d~-l~qLTWk~~~~f~yd~~tl~~~~~~~------------------y---~~EGWGLt~d--g~~Li~ 144 (264)
T PF05096_consen 90 YFGEGITIL-GDK-LYQLTWKEGTGFVYDPNTLKKIGTFP------------------Y---PGEGWGLTSD--GKRLIM 144 (264)
T ss_dssp --EEEEEEE-TTE-EEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EEEEC--SSCEEE
T ss_pred ccceeEEEE-CCE-EEEEEecCCeEEEEccccceEEEEEe------------------c---CCcceEEEcC--CCEEEE
Confidence 467888886 344 666554 5888888887444443221 1 1345788865 578999
Q ss_pred EECCCCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 148 ADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 148 ~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
+|....|+.+||++=+.. .+.-..++.+....|.+..- +|.||.--.. +..|+++||++|+
T Consensus 145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~ 206 (264)
T PF05096_consen 145 SDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGK 206 (264)
T ss_dssp E-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-B
T ss_pred ECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCe
Confidence 998888999999874333 33323456677788888765 7899987754 4689999999999
Q ss_pred EEEecc-----------C-----CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 227 TTVLLR-----------N-----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 227 ~~~~~~-----------~-----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+.-..+ . ..--||||.+|+.+.+||+--.=.+++.+.+.
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 876531 0 12469999999999999985433566666543
No 62
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.20 E-value=0.00045 Score=64.16 Aligned_cols=193 Identities=17% Similarity=0.238 Sum_probs=110.6
Q ss_pred ceEEEccCCCeeEEEecC------------CEEEEEeCC--c-eeEEEeecCCCcccCCCCCCccccccccCccCccceE
Q 016318 72 ESMAFDPLGRGPYTGVAD------------GRILFWDGL--K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~------------g~I~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi 136 (391)
-++.+|+.|++|..++.. -+|+.+|.. + .+.+.. +.. .....+....+
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~-p~~----------------~~~~~s~lndl 66 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPF-PPD----------------IAPPDSFLNDL 66 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE---CC----------------CS-TCGGEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEEC-ChH----------------HcccccccceE
Confidence 367899999854445432 388999877 2 222221 111 11123456678
Q ss_pred EEecCC-----CcEEEEECC-CCeEEEeCCCCeeEEceecc------------CCCccc---CCcceeecC---CC-CEE
Q 016318 137 RFDKKT-----GDLYIADAY-FGLMKVGPEGGLATSLATEA------------EGVPLR---FTNDLDIDD---EG-NVY 191 (391)
Q Consensus 137 ~~d~~~-----g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~------------~~~~~~---~~~~l~~d~---~G-~ly 191 (391)
++|..+ +..||+|.. .||.++|..+++..++.... .|..+. ...+++..+ +| .+|
T Consensus 67 ~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY 146 (287)
T PF03022_consen 67 VVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY 146 (287)
T ss_dssp EEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred EEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence 888632 468999998 57999999998876654211 111111 133455543 33 477
Q ss_pred EEeCCCcccchhheeeecccCCCceEEEEeCC---C----------CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318 192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT---T----------KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~---~----------~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
+..-++ ..+++...+ + .+++.+.+......|++++++|. ||+++...+.
T Consensus 147 f~~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~a 208 (287)
T PF03022_consen 147 FHPLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNA 208 (287)
T ss_dssp EEETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTE
T ss_pred EEeCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCe
Confidence 765331 234444321 0 01222222223567899999887 9999999999
Q ss_pred EEEEEecccc-CccceeecccC---CCCCceEeCC--CCCEEEEEcC
Q 016318 259 LHKYWLIGEK-AGNLEAFAILP---GYPDNVRTNE--KGEFWVAIHC 299 (391)
Q Consensus 259 I~~~~~~g~~-~g~~~~~~~~~---g~p~~i~~d~--~G~lwva~~~ 299 (391)
|.+++..++- ..+.++++.-+ -+|+++.++. +|.+|+....
T Consensus 209 I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 209 IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 9999977642 23445555322 4799999999 9999998755
No 63
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.20 E-value=0.00088 Score=67.28 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=128.6
Q ss_pred eccccccCcceEEEcc--CCCeeEEEe-cCCEEEEEeCC--ceeEEEeecCCCc--ccCCCCCCccccccccCccCccce
Q 016318 63 KFLNQIQGPESMAFDP--LGRGPYTGV-ADGRILFWDGL--KWTDFAFTSNNRS--ELCNPKPIATSYLKNEHICGRPLG 135 (391)
Q Consensus 63 ~~~~~~~gPe~i~~d~--~G~~ly~~~-~~g~I~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~P~g 135 (391)
+.-|+.+.|+--..|. ||+.+|+.. .+.||-|++.+ +...+...++... ..|-...+-..|+. |+.=..
T Consensus 122 ~~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~----~~~e~~ 197 (635)
T PRK02888 122 YLNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVF----CNGEFR 197 (635)
T ss_pred ccCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEE----eCcccc
Confidence 4457788887655553 688777765 47899999887 3333332221110 00100000011110 111112
Q ss_pred EEEecCCCcEEEEECCCC-eEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCC-EEEEeCCCccc---------chh
Q 016318 136 LRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQ---------RRN 203 (391)
Q Consensus 136 i~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~---------~~~ 203 (391)
+=+++++..++..+.+.+ +..+|.++-++ ... ..++ .|..++++++|. +|++...+.-. -++
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV--~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d 271 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEV--AWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD 271 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceE--EEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence 223342224555544545 67788776432 221 1222 578899999885 55653211100 001
Q ss_pred heee--e---cccC--------CCceEEEEeCCC-----CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 204 FMQL--V---FSAE--------DTGRVLKYDPTT-----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 204 ~~~~--~---~~~~--------~~g~l~~~d~~~-----~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+... + .+.. ..++|-.+|..+ .+..........|.|++++|||+++|++...++.+..++++
T Consensus 272 ~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 272 WVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred eEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 1000 0 0111 234688888876 34555556667999999999999999999888999999876
Q ss_pred cccC---cc----ceeecc--cCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318 266 GEKA---GN----LEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSLYSH 306 (391)
Q Consensus 266 g~~~---g~----~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~ 306 (391)
.-+. ++ ..+..+ +--.|-..++|.+|+.|+++.-...+..|
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence 4211 01 112222 21258889999999999998876665444
No 64
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=0.0026 Score=57.65 Aligned_cols=193 Identities=11% Similarity=0.138 Sum_probs=114.7
Q ss_pred ccCcceEEEccCCCeeEEEecC-CEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 68 IQGPESMAFDPLGRGPYTGVAD-GRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~~-g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
-..-.+++++++.+.+|+.+.. -.|+.++.. + ..++.- .....|-+|.+-. +|.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------------------~g~~DpE~Ieyig-~n~ 141 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------------------TGFSDPETIEYIG-GNQ 141 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------------------cccCChhHeEEec-CCE
Confidence 3457789999999988876654 577777665 2 222211 1145677888875 555
Q ss_pred EEEEECCCC---eEEEeCCCCeeEEcee--c--cCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCce
Q 016318 145 LYIADAYFG---LMKVGPEGGLATSLAT--E--AEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 145 L~V~d~~~g---l~~~d~~~g~~~~~~~--~--~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
.-++|.... ++.+|+++..+..-.. + ....+.....++|-|+. +++|++-.. +| -+
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~ 205 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IG 205 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cE
Confidence 566665533 4556666543322110 1 11122456789999985 578888632 22 25
Q ss_pred EEEEeCCCCeEEEecc-------C--CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-------ccCC
Q 016318 217 VLKYDPTTKQTTVLLR-------N--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-------ILPG 280 (391)
Q Consensus 217 l~~~d~~~~~~~~~~~-------~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-------~~~g 280 (391)
|+.++........... + +..-.|+.+++..+.++|-...++.+..++.+|...+....-. +.|
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip- 284 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP- 284 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-
Confidence 6666633222211110 0 1234578888877778888788889999998885322111111 122
Q ss_pred CCCceEeCCCCCEEEEEcCC
Q 016318 281 YPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 281 ~p~~i~~d~~G~lwva~~~~ 300 (391)
.+.||+.|.+|++|+..-.+
T Consensus 285 qaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 285 QAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred CcceeEECCCCCEEEEecCC
Confidence 37899999999999986543
No 65
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0012 Score=65.21 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=100.0
Q ss_pred ceEEEccCCCeeEEEecC---CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 72 ESMAFDPLGRGPYTGVAD---GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~---g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
.+..++|||+.+.+.+.+ ..|+.++.. ..+.+... .+.-...++++++..|+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------------------~g~~~~~~wSPDG~~La 263 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----------------------RGHNGAPAFSPDGSRLA 263 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----------------------CCccCceeECCCCCEEE
Confidence 456788999866554432 357777754 11222111 01112457888433465
Q ss_pred EEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 147 IADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 147 V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
++....| |+.+|.+++..+.+... . ......+..+||. |+++... .+.-.|+.++.
T Consensus 264 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~ 323 (429)
T PRK01742 264 FASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSA 323 (429)
T ss_pred EEEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEEC
Confidence 5533333 88899988877665432 1 1245678899996 6666422 12346888887
Q ss_pred CCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318 223 TTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~ 298 (391)
.++..+.+. ... ...+++|||+.++++.. ..++++++.+ ++.+.... ........++++|+..+...
T Consensus 324 ~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~---g~~~~lt~-~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 324 SGGGASLVG-GRG--YSAQISADGKTLVMING--DNVVKQDLTS---GSTEVLSS-TFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCCCeEEec-CCC--CCccCCCCCCEEEEEcC--CCEEEEECCC---CCeEEecC-CCCCCCceECCCCCEEEEEE
Confidence 776665542 211 34679999998877643 5788888654 22222221 11123467889998555543
No 66
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.14 E-value=0.00033 Score=70.20 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=124.5
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
.+-.++.+..+|+.+++.+-||++..||..+.+-|.... |. + --.-..+++|+ .|.|.++
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft------~P-----------~--p~QfscvavD~-sGelV~A 452 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT------SP-----------E--PIQFSCVAVDP-SGELVCA 452 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec------CC-----------C--ceeeeEEEEcC-CCCEEEe
Confidence 355667788899999999999999999988544444321 00 0 01123678898 7888777
Q ss_pred ECCC--CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 149 DAYF--GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 149 d~~~--gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
.+.. .|+.++.+||+...+....+|. ..++.++++|++.++.+- ..+-|++-.-...++
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SW---------------DkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSW---------------DKTVRIWDIFSSSGT 513 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccc---------------cceEEEEEeeccCce
Confidence 6553 4999999999877665555553 677899999987777532 112244433334455
Q ss_pred EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cCcc-------------ceeecc----cCCCCCceEeC
Q 016318 227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGN-------------LEAFAI----LPGYPDNVRTN 288 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~g~-------------~~~~~~----~~g~p~~i~~d 288 (391)
.+++. --....++++.|||+-|.|+ |.++.|..++.+.. ..+. .+.+.. ....-..|+.+
T Consensus 514 vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS 591 (893)
T KOG0291|consen 514 VETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS 591 (893)
T ss_pred eeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEc
Confidence 55542 23456789999999999998 66778888876521 1111 111210 00123458889
Q ss_pred CCCCEEEEEcCCCch
Q 016318 289 EKGEFWVAIHCRRSL 303 (391)
Q Consensus 289 ~~G~lwva~~~~~~~ 303 (391)
.||.+.+|....+.+
T Consensus 592 aDG~~IlAgG~sn~i 606 (893)
T KOG0291|consen 592 ADGKCILAGGESNSI 606 (893)
T ss_pred CCCCEEEecCCcccE
Confidence 999988876655444
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.0004 Score=65.85 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=113.0
Q ss_pred CcceEEEccCCCeeEEEecCCEEE--EEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCC
Q 016318 70 GPESMAFDPLGRGPYTGVADGRIL--FWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTG 143 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g 143 (391)
+-.+|-|.|.-.++.++..|+.+. .+|++ .+..+.. ...|. ..+|.+ +|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l------------------------~~fPi~~a~f~p-~G 269 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL------------------------EKFPIQKAEFAP-NG 269 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee------------------------ccCccceeeecC-CC
Confidence 567888998888888888887544 44444 1111110 12232 345666 45
Q ss_pred c--EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 144 D--LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 144 ~--L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
. ++++....=++.+|..+.++..+... .|.+-.+...+.+.+++++..... .+|.|....
T Consensus 270 ~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLh 331 (514)
T KOG2055|consen 270 HSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLH 331 (514)
T ss_pred ceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcc-----------------cCceEEeeh
Confidence 4 34433233489999999888776433 333334667788888888544442 257788887
Q ss_pred CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeCCCCCEEEEEcCC
Q 016318 222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d~~G~lwva~~~~ 300 (391)
..|++...-..--....+++++.|++.||++ ...+.||.+++... .....|.+-.+ .-..++.+.+|. |+|+.+.
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~ 407 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSD 407 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCCceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence 7777654333222345678899999988877 44569999998654 33444544222 234578888887 6666554
No 68
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.0013 Score=59.73 Aligned_cols=190 Identities=18% Similarity=0.246 Sum_probs=113.6
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
...--.+++.+++|+.+.+++.|..|.-||-- -...+... .-.++..+++.+.
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------SPVWGAQWHPRKR 119 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc------------------------CccceeeeccccC
Confidence 34455789999999999999999988888754 12222211 1124666777667
Q ss_pred cEEEEECCC-CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 144 DLYIADAYF-GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 144 ~L~V~d~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
+..|+.--. .-+.++...++.+.+....++.....+....+|+.|+..++..+ .|.+..||.
T Consensus 120 n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------KGkllv~~a 182 (405)
T KOG1273|consen 120 NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------KGKLLVYDA 182 (405)
T ss_pred CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC-----------------cceEEEEec
Confidence 777765432 33333333344455544444433334555678999976666544 489999998
Q ss_pred CCCeEEEeccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc----ccCcccee---eccc-CCCC-CceEeCCCC
Q 016318 223 TTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG----EKAGNLEA---FAIL-PGYP-DNVRTNEKG 291 (391)
Q Consensus 223 ~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g----~~~g~~~~---~~~~-~g~p-~~i~~d~~G 291 (391)
.|-+...-... .+....|-++..|+++.+ ++...-|..|.+.. .+.+..+. +.++ ...+ .+++++.+|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 87654332211 233446778889996655 47677778887652 12333332 1221 1122 468899999
Q ss_pred CEEEEEc
Q 016318 292 EFWVAIH 298 (391)
Q Consensus 292 ~lwva~~ 298 (391)
.+.+|..
T Consensus 262 eYv~a~s 268 (405)
T KOG1273|consen 262 EYVCAGS 268 (405)
T ss_pred cEEEecc
Confidence 8777654
No 69
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.12 E-value=0.0012 Score=59.61 Aligned_cols=197 Identities=13% Similarity=0.195 Sum_probs=100.1
Q ss_pred CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
..+.||+++++.+.||+..-..+ |+.++.++..++.+. ..+ +.-+.+|+...+|.+.+++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er------------- 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER------------- 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-------------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-------------
Confidence 44789999996788988766544 999998865555432 222 345788998888888887743
Q ss_pred ccCCCceEEEEeC--CCCeE-----EEeccCC-----CCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeec
Q 016318 210 SAEDTGRVLKYDP--TTKQT-----TVLLRNL-----QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFA 276 (391)
Q Consensus 210 ~~~~~g~l~~~d~--~~~~~-----~~~~~~~-----~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~ 276 (391)
.++++.++. .++.. ..+.-++ ..--|+|+++.++.++++.-.. .+|+.+...-. .....+..
T Consensus 85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~ 159 (248)
T PF06977_consen 85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSD 159 (248)
T ss_dssp ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE
T ss_pred ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeecc
Confidence 355655443 33222 1121111 1235999999877787774322 34555543101 00111100
Q ss_pred --ccC------CCCCceEeCCC-CCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCC
Q 016318 277 --ILP------GYPDNVRTNEK-GEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPE 347 (391)
Q Consensus 277 --~~~------g~p~~i~~d~~-G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~ 347 (391)
.++ .-|.++++++. |++|+-.... .+++++|.+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es--------------------------------------~~l~~~d~~ 201 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES--------------------------------------RLLLELDRQ 201 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTT--------------------------------------TEEEEE-TT
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCC--------------------------------------CeEEEECCC
Confidence 011 12566777764 4577654433 458889999
Q ss_pred CCEEEEEeCCCC-----CeeeceeEEEEE-CCEEEEecCCCCeEEEE
Q 016318 348 GKILQVLEDSKG-----KVVKAISEVEEK-DGKLWMGSVLMPFVAVY 388 (391)
Q Consensus 348 g~~~~~~~~~~g-----~~~~~is~~~~~-~g~Lylgs~~~~~i~~~ 388 (391)
|+++..+.=..| +.+.....++.+ +|+||+.|=. +..-|+
T Consensus 202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp --EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 998776644443 234445566654 4999999853 344443
No 70
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.09 E-value=0.0042 Score=55.98 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=127.7
Q ss_pred cceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEE----------EeecCCCcccCCCCCCccccc--
Q 016318 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDF----------AFTSNNRSELCNPKPIATSYL-- 124 (391)
Q Consensus 60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~-- 124 (391)
.++.+.|.+.---++-..+|.+.+..++.||++..||.- +...+ +..+....-.|.+-...|.-.
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 345566766667788888999989999999999999864 11111 111111111222211111000
Q ss_pred -------------cccCccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCE
Q 016318 125 -------------KNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNV 190 (391)
Q Consensus 125 -------------~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~l 190 (391)
.....-+......|-. ++.|..+....-....|.++|+.........| -...+++.| +++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g----DV~slsl~p~~~nt 201 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG----DVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc----cEEEEecCCCCCCe
Confidence 0111123333445543 55666554444567778887765443222222 345677777 8899
Q ss_pred EEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318 191 YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA 269 (391)
Q Consensus 191 y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~ 269 (391)
|++.+- +.....+|...+...+-.. .-...|.|.+.|+|. -+++-+.......|++..+
T Consensus 202 FvSg~c-----------------D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD-- 261 (343)
T KOG0286|consen 202 FVSGGC-----------------DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD-- 261 (343)
T ss_pred EEeccc-----------------ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--
Confidence 998743 3556778877776555443 345688999999998 5566677777888887643
Q ss_pred ccceeecc--cCCCCCceEeCCCCCEEEEEcCC
Q 016318 270 GNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 270 g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~ 300 (391)
.+..+|.. ......+++++..|++..+....
T Consensus 262 ~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 262 QELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 34455542 11235678999999977775544
No 71
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.07 E-value=0.0024 Score=57.06 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=123.7
Q ss_pred ccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318 59 NSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (391)
Q Consensus 59 ~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~ 138 (391)
.+.+.+.|-=+.-++++..+||+..+++++|+.+..||...-+....+ +......++++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f--------------------~GH~~dVlsva~ 113 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF--------------------VGHTKDVLSVAF 113 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE--------------------EecCCceEEEEe
Confidence 344455554456678899999998899999998888887621222111 111344788999
Q ss_pred ecCCCcEEEEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318 139 DKKTGDLYIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 139 d~~~g~L~V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
++ +++-+|..+ .+-|..+|..++..-.+... ..-...+.+.+.|+. +.++...+ .++.
T Consensus 114 s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~---~~~~WVscvrfsP~~~~p~Ivs~s----------------~Dkt 173 (315)
T KOG0279|consen 114 ST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHED---SHREWVSCVRFSPNESNPIIVSAS----------------WDKT 173 (315)
T ss_pred cC-CCceeecCCCcceeeeeeecccEEEEEecC---CCcCcEEEEEEcCCCCCcEEEEcc----------------CCce
Confidence 98 555555433 35588888776543333221 113578888888874 66666544 2466
Q ss_pred EEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318 217 VLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV 295 (391)
Q Consensus 217 l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv 295 (391)
|-.+|.++-+.+.-. ..-.+.|-++++|||. ++.+....+.++..++...+. ...+.. .-....+++.|+ ++|+
T Consensus 174 vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~a-~~~v~sl~fspn-rywL 248 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLEA-FDIVNSLCFSPN-RYWL 248 (315)
T ss_pred EEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEeccC-CCeEeeEEecCC-ceeE
Confidence 777888776665433 3345778999999998 777655566777777764221 111111 012456888875 5787
Q ss_pred EEcCCCc
Q 016318 296 AIHCRRS 302 (391)
Q Consensus 296 a~~~~~~ 302 (391)
+.....+
T Consensus 249 ~~at~~s 255 (315)
T KOG0279|consen 249 CAATATS 255 (315)
T ss_pred eeccCCc
Confidence 7554433
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.07 E-value=0.0056 Score=59.22 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=113.2
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
-.++.+.|||..+.+...||+|+.+|+..-+.+.... ..+...|...++.++|+..++.-+.+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~-----------------~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE-----------------DSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec-----------------CCCCccccEEEEEECCCCceEEEecC
Confidence 4588899999977788899999999987222221111 01122466778888885556666666
Q ss_pred CCCeEEEeCCCCeeEE-ce--eccCCCc------------------------------------ccCCcceeecCCCCEE
Q 016318 151 YFGLMKVGPEGGLATS-LA--TEAEGVP------------------------------------LRFTNDLDIDDEGNVY 191 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~-~~--~~~~~~~------------------------------------~~~~~~l~~d~~G~ly 191 (391)
.+-+-..|..++++.. +. ...+.++ .+....+.+.++|...
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 5655555554443221 11 1111110 1122334444444333
Q ss_pred EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC
Q 016318 192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA 269 (391)
Q Consensus 192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~ 269 (391)
++ +.-+|.+..|+..++....+.... ....+++.+..+. ++.. ...+.++++.+++...
T Consensus 336 ~S-----------------gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 336 YS-----------------GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGY 396 (603)
T ss_pred Ee-----------------eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcc
Confidence 33 334788999998888776654322 3456788776666 5444 5567899998876544
Q ss_pred ccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318 270 GNLEAFAILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 270 g~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
.+.++ ..+...|.++++.++|.+.+....
T Consensus 397 t~~~~-~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 397 TKSEV-VKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred cccce-eecCCCceeEEEcCCCCEEEEEec
Confidence 44333 245567999999999865544433
No 73
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0047 Score=60.98 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=83.3
Q ss_pred ceEEEecCCCcE-EEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeec
Q 016318 134 LGLRFDKKTGDL-YIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 134 ~gi~~d~~~g~L-~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~ 209 (391)
....+++++..| |+.... ..|+.++.++++.+.+... .+ .....++.+||+ |+++.+.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~------------- 263 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK------------- 263 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc-------------
Confidence 456788844455 444332 2399999998877766422 21 123467888985 6665432
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
.+...|+.+|.++++.+.+..........+++|||+.++++... ...|+++++.+. +.+.+............
T Consensus 264 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 264 --DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---RAERVTFVGNYNARPRL 338 (430)
T ss_pred --CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeecCCCCccceEE
Confidence 12347999999998887765443344567899999988776432 347888887653 22222211122334567
Q ss_pred CCCCCE
Q 016318 288 NEKGEF 293 (391)
Q Consensus 288 d~~G~l 293 (391)
+++|+.
T Consensus 339 Spdg~~ 344 (430)
T PRK00178 339 SADGKT 344 (430)
T ss_pred CCCCCE
Confidence 888873
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.012 Score=57.44 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=73.7
Q ss_pred CeeEEEecCCEEEEEeCCceeEEEee-cCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEECCCCeEEEe
Q 016318 81 RGPYTGVADGRILFWDGLKWTDFAFT-SNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADAYFGLMKVG 158 (391)
Q Consensus 81 ~~ly~~~~~g~I~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d~~~gl~~~d 158 (391)
+.+|+...+|.++.+|.+.-+..-.. ........ ........ -++.++ ++++|+++....|+.+|
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-----------~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~ald 136 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWF-----------SKNKSALLSGGVTVA--GGKVYIGSEKGQVYALN 136 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCccccc-----------ccccccccccccEEE--CCEEEEEcCCCEEEEEE
Confidence 34999999999999987611111111 00000000 00000000 123454 68999997666699999
Q ss_pred CCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC-CC--
Q 016318 159 PEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN-LQ-- 235 (391)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~-- 235 (391)
.++|+..=- ....+... ...++. +|.+|+.+. +|.|+.+|+++|+..--... ..
T Consensus 137 ~~tG~~~W~-~~~~~~~~---ssP~v~-~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 137 AEDGEVAWQ-TKVAGEAL---SRPVVS-DGLVLVHTS------------------NGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCCCCCccc-ccCCCcee---cCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeecCCCCcc
Confidence 998863211 11111111 111222 567888763 37899999998876422111 00
Q ss_pred ---CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 236 ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 236 ---~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.....++. ++ .+++. +.+++++.++.+
T Consensus 194 ~~~~~~sP~v~-~~-~v~~~-~~~g~v~a~d~~ 223 (394)
T PRK11138 194 TLRGESAPATA-FG-GAIVG-GDNGRVSAVLME 223 (394)
T ss_pred cccCCCCCEEE-CC-EEEEE-cCCCEEEEEEcc
Confidence 00111222 23 36665 456677777654
No 75
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.01 E-value=0.0053 Score=59.22 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=101.5
Q ss_pred CCeeEEEe-cCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEEEEECCCCeEEE
Q 016318 80 GRGPYTGV-ADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLYIADAYFGLMKV 157 (391)
Q Consensus 80 G~~ly~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~V~d~~~gl~~~ 157 (391)
++++|+.. .+|.|..+|....+.+.... ..+.++ ++.+++++..+||++....|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence 45555544 56899999887433332221 123444 56778744559999866569999
Q ss_pred eCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC---
Q 016318 158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN--- 233 (391)
Q Consensus 158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--- 233 (391)
|..++++..-. ..| ..|.++++++||+ +|++... .+.+..+|.++.+.......
T Consensus 64 D~~~~~~v~~i--~~G---~~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 64 DLATGKVVATI--KVG---GNPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp ETTSSSEEEEE--E-S---SEEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE
T ss_pred ECCcccEEEEE--ecC---CCcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccc
Confidence 99887633211 112 3589999999996 5555522 46899999888765433211
Q ss_pred -----CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEE-EEEcC
Q 016318 234 -----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFW-VAIHC 299 (391)
Q Consensus 234 -----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lw-va~~~ 299 (391)
-....+|..++.+...+++-...++||.++....+.-.. ...+...+|.+..+|++|+++ ++...
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeecccccccccccCcccceeeecccc
Confidence 113347777888886666666778999998665421111 122233468889999999955 54444
No 76
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.98 E-value=0.0019 Score=56.90 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=125.3
Q ss_pred eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeCCC
Q 016318 82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEG 161 (391)
Q Consensus 82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~ 161 (391)
++.++.+|..|..|.... ..|.. ..++..+....+.+.+ ++..+++-....|..+|..+
T Consensus 12 iLvsA~YDhTIRfWqa~t------------G~C~r--------Tiqh~dsqVNrLeiTp-dk~~LAaa~~qhvRlyD~~S 70 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT------------GICSR--------TIQHPDSQVNRLEITP-DKKDLAAAGNQHVRLYDLNS 70 (311)
T ss_pred EEEeccCcceeeeeehhc------------CeEEE--------EEecCccceeeEEEcC-CcchhhhccCCeeEEEEccC
Confidence 466778888888886541 12321 1223345667788888 55655554566788888877
Q ss_pred CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEE
Q 016318 162 GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS 241 (391)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia 241 (391)
+.-..+.+ +++ .-+....+.+..+|+...+.+ .+|.+-.+|...-+.....+-....|.|.
T Consensus 71 ~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vv 131 (311)
T KOG0315|consen 71 NNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVV 131 (311)
T ss_pred CCCCceeE-Eec-cCCceEEEEEeecCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEE
Confidence 65433322 122 123455666777886444442 25777778876544433333335568999
Q ss_pred EccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccce--eeee
Q 016318 242 LSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIR--HFLL 319 (391)
Q Consensus 242 ~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~--~~~~ 319 (391)
++|++..|++++ .++.|+..++..... ..+..-+..-....+.+.++|...+|.....+.+.|.+...-..- +.+.
T Consensus 132 lhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 132 LHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred ecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence 999988888874 567899998764311 111111111123568889999988887776665554333311110 1111
Q ss_pred ecCccceeeeEEeecCccceEEEEECCCCCEEEEE
Q 016318 320 KLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVL 354 (391)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~ 354 (391)
+++. ...|.+-..++|+++.+..-
T Consensus 210 k~~a-----------h~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 210 KFQA-----------HNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred heec-----------ccceEEEEEECCCCcEEEee
Confidence 1111 13456667778888776543
No 77
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.0011 Score=66.00 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=108.2
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
.+.-.+-.++++.++|..+.+++.|+.|..|+.. ....+.... .......+++|++ .+
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~p-~g 258 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFSP-DG 258 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEecC-CC
Confidence 4455677899999999988999999999988873 222221111 1124457889998 56
Q ss_pred cEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 144 DLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 144 ~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
++++.....+ +...|..+++......... .....+++.++|++.++.+. ++.+..||.
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~ 317 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHS----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDL 317 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccC----CceEEEEECCCCCEEEEcCC-----------------CccEEEEEC
Confidence 7777666655 8888888866544332222 25688899999998887743 588999999
Q ss_pred CCCeEE--EeccCCCCc---ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 223 TTKQTT--VLLRNLQFP---NGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 223 ~~~~~~--~~~~~~~~~---ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.+++.. ........+ +.++++|++++++++ +.++.+..+++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR 364 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence 999843 333333344 789999999988776 545555555554
No 78
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.96 E-value=0.00018 Score=68.46 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=92.7
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee--ccCCCcccCCcceeecCC----CCEEEEeCCCcccchhh
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT--EAEGVPLRFTNDLDIDDE----GNVYFTDSSTNYQRRNF 204 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~--~~~~~~~~~~~~l~~d~~----G~ly~td~~~~~~~~~~ 204 (391)
.+|.+|++.+ +|+|||++....|++++.++.....+.. ...........+++++++ +.||+.-+....
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~----- 75 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE----- 75 (331)
T ss_dssp SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence 4699999999 7999999875459999855433133322 111222346788899984 899998742100
Q ss_pred eeeecccCCCceEEEEeCCCC-----eEEEecc-------CCCCcceEEEccCCCEEEEEeC-------------CCCeE
Q 016318 205 MQLVFSAEDTGRVLKYDPTTK-----QTTVLLR-------NLQFPNGLSLSKDKSFFVFCEG-------------SVGRL 259 (391)
Q Consensus 205 ~~~~~~~~~~g~l~~~d~~~~-----~~~~~~~-------~~~~~ngia~~~d~~~l~v~et-------------~~~~I 259 (391)
.......+|.|+....+ ..+++.. ......+++++|||. |||+-- ..+.|
T Consensus 76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceE
Confidence 00011235666654333 1222221 223456799999995 998832 23689
Q ss_pred EEEEecccc----------CccceeecccCCCCCceEeCCC-CCEEEEEcCC
Q 016318 260 HKYWLIGEK----------AGNLEAFAILPGYPDNVRTNEK-GEFWVAIHCR 300 (391)
Q Consensus 260 ~~~~~~g~~----------~g~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~ 300 (391)
.|++.+|.- ....++|+.--.-|-++++|+. |++|++..+.
T Consensus 151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred EEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 999987641 1134555531123668999999 9999998654
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.95 E-value=0.0035 Score=56.60 Aligned_cols=107 Identities=24% Similarity=0.277 Sum_probs=72.1
Q ss_pred ceEEEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318 134 LGLRFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
.|+.+.. +|.||.++...| |.++|+++|++.....- + +-.|..++++- ++.||--+..
T Consensus 48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~--~~~FgEGit~~-~d~l~qLTWk-------------- 108 (264)
T PF05096_consen 48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-P--PRYFGEGITIL-GDKLYQLTWK-------------- 108 (264)
T ss_dssp EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE--T--TT--EEEEEEE-TTEEEEEESS--------------
T ss_pred ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-C--ccccceeEEEE-CCEEEEEEec--------------
Confidence 5788865 789999988766 99999999976543221 1 12477788877 4489888865
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
++..+.||+++-+...-..-.....|++ .|++.||+++ ++.+|+.++.+
T Consensus 109 ---~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~ 157 (264)
T PF05096_consen 109 ---EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPE 157 (264)
T ss_dssp ---SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT
T ss_pred ---CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCc
Confidence 5789999998765433222234667888 5677799985 47899999854
No 80
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.93 E-value=0.017 Score=56.60 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=83.8
Q ss_pred eEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~ 210 (391)
...+++++..|+++.... .|+.+|..+++.+.+... .+ ....+++.+||+ ++++.+.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~-------------- 254 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK-------------- 254 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC--------------
Confidence 446777444455544332 389999988866655322 21 233477888985 7666432
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.....|+.+|..+++.+.+..........++++|++.|+++... ...|+++++++.+ ...+............+
T Consensus 255 -~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~s 330 (417)
T TIGR02800 255 -DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWS 330 (417)
T ss_pred -CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEEC
Confidence 12346999999888877765433333456889999987765432 2378988876532 22222112234467788
Q ss_pred CCCCEEEEE
Q 016318 289 EKGEFWVAI 297 (391)
Q Consensus 289 ~~G~lwva~ 297 (391)
++|+..+..
T Consensus 331 pdg~~i~~~ 339 (417)
T TIGR02800 331 PDGDLIAFV 339 (417)
T ss_pred CCCCEEEEE
Confidence 888744433
No 81
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.93 E-value=0.00084 Score=65.77 Aligned_cols=162 Identities=16% Similarity=0.243 Sum_probs=96.3
Q ss_pred cCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEcee---ccCCCcccCCcceeecCC-------CCEEEEeCCCc
Q 016318 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLAT---EAEGVPLRFTNDLDIDDE-------GNVYFTDSSTN 198 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~---~~~~~~~~~~~~l~~d~~-------G~ly~td~~~~ 198 (391)
...|.+|++.+ +|+|||+... ..|+++++.++..+.+.. .........+-+|+++|+ +.||++-+...
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 57799999999 7999999874 459999877664433321 111111345678888754 46899853210
Q ss_pred ccchhheeeecccCCCceEEEEeCC--CC---eEEEeccCC-----CCcceEEEccCCCEEEEEeCCC------------
Q 016318 199 YQRRNFMQLVFSAEDTGRVLKYDPT--TK---QTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSV------------ 256 (391)
Q Consensus 199 ~~~~~~~~~~~~~~~~g~l~~~d~~--~~---~~~~~~~~~-----~~~ngia~~~d~~~l~v~et~~------------ 256 (391)
-.. +.....+|.|+..+ +. ..+++...+ ++-..|+++|||. |||+--..
T Consensus 108 ~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 108 GDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred CCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccCcc
Confidence 000 00013467766532 11 123333322 3445799999998 89863221
Q ss_pred --------------------CeEEEEEecccc-C-------ccceeecccCCCCCceEeCCCCCEEEEEcCCC
Q 016318 257 --------------------GRLHKYWLIGEK-A-------GNLEAFAILPGYPDNVRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 257 --------------------~~I~~~~~~g~~-~-------g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~ 301 (391)
+.|+|++.+|.- . ...++|+---.-|-++++|++|.+|++.++.+
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCC
Confidence 268999888741 0 12345542112477899999999999987653
No 82
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.90 E-value=0.024 Score=54.85 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=75.7
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
+.+++ ++ .+|+++.+|.++.++...-+..-...-. ....+ +..++ ++.+||++...
T Consensus 60 ~p~v~-~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~~~~~---~p~v~--~~~v~v~~~~g 115 (377)
T TIGR03300 60 QPAVA-GG-KVYAADADGTVVALDAETGKRLWRVDLD-----------------ERLSG---GVGAD--GGLVFVGTEKG 115 (377)
T ss_pred ceEEE-CC-EEEEECCCCeEEEEEccCCcEeeeecCC-----------------CCccc---ceEEc--CCEEEEEcCCC
Confidence 44554 34 5999999999999986511111111000 00012 22343 67899987666
Q ss_pred CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232 (391)
Q Consensus 153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~ 232 (391)
.|+.+|.++|++.-- ....+... ...++ .++.+|+... +|.|+.+|+++|+..--..
T Consensus 116 ~l~ald~~tG~~~W~-~~~~~~~~---~~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 116 EVIALDAEDGKELWR-AKLSSEVL---SPPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYS 172 (377)
T ss_pred EEEEEECCCCcEeee-eccCceee---cCCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEc
Confidence 699999988864321 11111111 11122 2567777653 4789999998887532211
Q ss_pred CCCC------cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 233 NLQF------PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 233 ~~~~------~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.... ....++. ++ .+|+. +.+++++.+++.
T Consensus 173 ~~~~~~~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~ 208 (377)
T TIGR03300 173 RVTPALTLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQ 208 (377)
T ss_pred cCCCceeecCCCCCEEE-CC-EEEEE-CCCCEEEEEEcc
Confidence 1100 0111222 33 36655 456688888764
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.014 Score=53.12 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=88.7
Q ss_pred CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
.+...|.+.| .++.++..+. +.|..+|....+..-+.. ...+.-.|.||+|-++.+...
T Consensus 101 ~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------~~~~pi~AfDp~GLifA~~~~------------- 160 (311)
T KOG1446|consen 101 KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN------LSGRPIAAFDPEGLIFALANG------------- 160 (311)
T ss_pred ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe------cCCCcceeECCCCcEEEEecC-------------
Confidence 4566778888 5677777665 347777766443332211 123444688999988777643
Q ss_pred ccCCCceEEEEeCCC---CeEEE--ec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe-ccccCccceeecccCCCC
Q 016318 210 SAEDTGRVLKYDPTT---KQTTV--LL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL-IGEKAGNLEAFAILPGYP 282 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~---~~~~~--~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~-~g~~~g~~~~~~~~~g~p 282 (391)
++.|-.||... |-... +. .....-+.+.+++||++++++ |..+.++.++. +|....+++...+-...|
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 23666677532 21222 22 234567899999999999988 55667777763 343222222222212255
Q ss_pred CceEeCCCCCEEEEEcCCCch
Q 016318 283 DNVRTNEKGEFWVAIHCRRSL 303 (391)
Q Consensus 283 ~~i~~d~~G~lwva~~~~~~~ 303 (391)
-.-++.|||++.++....+++
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred eeEEECCCCcEEEEecCCCcE
Confidence 566788999988776665443
No 84
>PTZ00421 coronin; Provisional
Probab=97.88 E-value=0.027 Score=56.51 Aligned_cols=162 Identities=13% Similarity=0.069 Sum_probs=93.8
Q ss_pred CcceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 70 GPESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
.-.++++++ +++.+++++.|+.|..|+...-....... ... ............++|++..++++++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~---~~l----------~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS---DPI----------VHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC---cce----------EEecCCCCcEEEEEeCcCCCCEEEE
Confidence 346888998 78889999999999999764100000000 000 0111123446688998843455554
Q ss_pred ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
... .-|..+|..+++........ ....+.+++.++|++.++.+. ++.|..||+.+++.
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCH----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTI 202 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCC----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcE
Confidence 344 44888898877543221111 124678899999998777643 57899999988765
Q ss_pred EEeccCC--CCcceEEEccCCCEEEEEeC---CCCeEEEEEec
Q 016318 228 TVLLRNL--QFPNGLSLSKDKSFFVFCEG---SVGRLHKYWLI 265 (391)
Q Consensus 228 ~~~~~~~--~~~ngia~~~d~~~l~v~et---~~~~I~~~~~~ 265 (391)
..-.... .....+.+.+++..++.+.. ..+.|..+++.
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 3322221 12235667777775543321 23467777654
No 85
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.86 E-value=0.012 Score=57.36 Aligned_cols=174 Identities=15% Similarity=0.062 Sum_probs=90.5
Q ss_pred CCcEEEEECCCCeEEEeCCCCeeEEcee---ccCCCcccCC----cceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLATSLAT---EAEGVPLRFT----NDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~---~~~~~~~~~~----~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.+|++.....++.+|.++|+..--.. .......... ...++ .+|.+|+++. +
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~------------------~ 265 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY------------------N 265 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc------------------C
Confidence 4567777655558888888775321100 0000000000 11112 2568888764 3
Q ss_pred ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCC-CCCceEeCCCC
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPG-YPDNVRTNEKG 291 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g-~p~~i~~d~~G 291 (391)
|.++++|+++|+..- ......+..+++ ++..+|+.. .+++++.++.+. |+ +.+.. +.+ ......+ .+|
T Consensus 266 g~l~ald~~tG~~~W-~~~~~~~~~~~~--~~~~vy~~~-~~g~l~ald~~t---G~-~~W~~~~~~~~~~~sp~v-~~g 336 (394)
T PRK11138 266 GNLVALDLRSGQIVW-KREYGSVNDFAV--DGGRIYLVD-QNDRVYALDTRG---GV-ELWSQSDLLHRLLTAPVL-YNG 336 (394)
T ss_pred CeEEEEECCCCCEEE-eecCCCccCcEE--ECCEEEEEc-CCCeEEEEECCC---Cc-EEEcccccCCCcccCCEE-ECC
Confidence 789999999987532 222222333333 344588874 567899998653 22 22221 111 1111222 256
Q ss_pred CEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEE
Q 016318 292 EFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEE 370 (391)
Q Consensus 292 ~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~ 370 (391)
.+|++... +.+.++|+ +|+++..+.-..+.. .++-..
T Consensus 337 ~l~v~~~~---------------------------------------G~l~~ld~~tG~~~~~~~~~~~~~---~s~P~~ 374 (394)
T PRK11138 337 YLVVGDSE---------------------------------------GYLHWINREDGRFVAQQKVDSSGF---LSEPVV 374 (394)
T ss_pred EEEEEeCC---------------------------------------CEEEEEECCCCCEEEEEEcCCCcc---eeCCEE
Confidence 67766543 34566664 688776665432222 233345
Q ss_pred ECCEEEEecCCCCeE
Q 016318 371 KDGKLWMGSVLMPFV 385 (391)
Q Consensus 371 ~~g~Lylgs~~~~~i 385 (391)
.+++||+++....-+
T Consensus 375 ~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 375 ADDKLLIQARDGTVY 389 (394)
T ss_pred ECCEEEEEeCCceEE
Confidence 678999998766433
No 86
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.84 E-value=0.011 Score=54.55 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=67.5
Q ss_pred CccceEEEecCCCcEEEEECC-CC--eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY-FG--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~-~g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~ 207 (391)
.|.++++.++ .....|+-+. -| ++++|..+++........++. -|--.-++++||++.+++.+ ++
T Consensus 5 ~RgH~~a~~p-~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn-d~-------- 72 (305)
T PF07433_consen 5 ARGHGVAAHP-TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN-DY-------- 72 (305)
T ss_pred ccccceeeCC-CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc-cc--------
Confidence 5677888887 3333333332 23 889999988766543333322 12234577889975555533 11
Q ss_pred ecccCCCceEEEEeCCCC--eEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318 208 VFSAEDTGRVLKYDPTTK--QTTVLLRNLQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~--~~~~~~~~~~~~ngia~~~d~~~l~v~e 253 (391)
....|.|-.||...+ ++..+....-.|.-+.+.|||+.|.|++
T Consensus 73 ---~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 73 ---ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ---CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 234678999998733 2333344455788899999998899984
No 87
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.82 E-value=0.00032 Score=70.41 Aligned_cols=123 Identities=17% Similarity=0.274 Sum_probs=81.7
Q ss_pred ccCccceEEEecCCCcEEEEECC-C-------------------CeEEEeCCCC-------eeEEceecc----------
Q 016318 129 ICGRPLGLRFDKKTGDLYIADAY-F-------------------GLMKVGPEGG-------LATSLATEA---------- 171 (391)
Q Consensus 129 ~~g~P~gi~~d~~~g~L~V~d~~-~-------------------gl~~~d~~~g-------~~~~~~~~~---------- 171 (391)
...||-++.+++.++.+|++... . .|+++++.++ ..+.+....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 36789999999988899998543 1 3999988765 444433211
Q ss_pred ---CCCcccCCcceeecCCCCEEEEeCCCcccch-------hheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcce
Q 016318 172 ---EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR-------NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNG 239 (391)
Q Consensus 172 ---~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~-------~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ng 239 (391)
....+..|.+|+++++|+|||.+.+...... -..+.+....+.. +..+++.+++++.+.... ....|
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG 506 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITG 506 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCccccc
Confidence 1335789999999999999999744322111 0011111111122 566788888888776443 46789
Q ss_pred EEEccCCCEEEEE
Q 016318 240 LSLSKDKSFFVFC 252 (391)
Q Consensus 240 ia~~~d~~~l~v~ 252 (391)
++++||+++|+|.
T Consensus 507 ~~fspDg~tlFvn 519 (524)
T PF05787_consen 507 PCFSPDGRTLFVN 519 (524)
T ss_pred ceECCCCCEEEEE
Confidence 9999999998885
No 88
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.81 E-value=0.0014 Score=65.85 Aligned_cols=124 Identities=19% Similarity=0.375 Sum_probs=74.8
Q ss_pred CcccCCcceeecC-CCCEEEEeCCCcccchhh--eeeecccCCCceEEEEeCCCC-------eEEEec------------
Q 016318 174 VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNF--MQLVFSAEDTGRVLKYDPTTK-------QTTVLL------------ 231 (391)
Q Consensus 174 ~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~~~-------~~~~~~------------ 231 (391)
.++..|.++.+++ +|.+|++.++..-..... ..........|.|++|++..+ +.+.+.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4678999999998 589999975533110000 001112455789999998766 333332
Q ss_pred ------cCCCCcceEEEccCCCEEEEEeCCCCeEE------------E--------EEeccccCccceeecccC--CCCC
Q 016318 232 ------RNLQFPNGLSLSKDKSFFVFCEGSVGRLH------------K--------YWLIGEKAGNLEAFAILP--GYPD 283 (391)
Q Consensus 232 ------~~~~~~ngia~~~d~~~l~v~et~~~~I~------------~--------~~~~g~~~g~~~~~~~~~--g~p~ 283 (391)
..+..|.+|+++++|+ |||+|.....-. . ++..++..++...|...| ....
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 1245788999999999 888887554311 1 112233344444454322 2346
Q ss_pred ceEeCCCCC-EEEEEc
Q 016318 284 NVRTNEKGE-FWVAIH 298 (391)
Q Consensus 284 ~i~~d~~G~-lwva~~ 298 (391)
|++++++|+ +||...
T Consensus 506 G~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNIQ 521 (524)
T ss_pred cceECCCCCEEEEEEe
Confidence 788999988 777654
No 89
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.81 E-value=0.012 Score=56.92 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEeC
Q 016318 80 GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP 159 (391)
Q Consensus 80 G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~ 159 (391)
++.+|+++.+|.++.++...-+..-... +. ......| .++ ++.+|++.....|+.+|+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~------~~-----------~~~~~~p---~v~--~~~v~v~~~~g~l~a~d~ 162 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAK------LS-----------SEVLSPP---LVA--NGLVVVRTNDGRLTALDA 162 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeec------cC-----------ceeecCC---EEE--CCEEEEECCCCeEEEEEc
Confidence 3448888889999999875111111000 00 0001112 222 578888876666999999
Q ss_pred CCCeeEEceeccCCCcc--cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc
Q 016318 160 EGGLATSLATEAEGVPL--RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP 237 (391)
Q Consensus 160 ~~g~~~~~~~~~~~~~~--~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ 237 (391)
++|+..--.. ...... ......++. +|.+|+... +|.++.+|+++|+..--. ....+
T Consensus 163 ~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~~~v~~~~~------------------~g~v~ald~~tG~~~W~~-~~~~~ 221 (377)
T TIGR03300 163 ATGERLWTYS-RVTPALTLRGSASPVIA-DGGVLVGFA------------------GGKLVALDLQTGQPLWEQ-RVALP 221 (377)
T ss_pred CCCceeeEEc-cCCCceeecCCCCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeee-ccccC
Confidence 8886421111 111100 011112222 357777653 378999999888643211 11111
Q ss_pred -------------ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 238 -------------NGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 238 -------------ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
....+ .++.+|++. ..+.++.++.+
T Consensus 222 ~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~ 259 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLR 259 (377)
T ss_pred CCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECC
Confidence 01112 244588774 45688888864
No 90
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.042 Score=54.04 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=84.5
Q ss_pred eEEEecCCCc-EEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeec
Q 016318 135 GLRFDKKTGD-LYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 135 gi~~d~~~g~-L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~ 209 (391)
.-.+++++++ +|+..... .|+.+|..+++.+.+.. ..+. .....+.+|| .+.++.+.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SPDG~~la~~~~~------------- 253 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSKDGSKLLLTMAP------------- 253 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECCCCCEEEEEEcc-------------
Confidence 4567774443 66554432 29999999998887753 2221 1224578888 47666532
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV--GRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~--~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
.++..|+.+|.++++.+.+......-....++|||+.|+++.... ..|+++++++. +.+.+.. .|. .+...
T Consensus 254 --~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g---~~~rlt~-~g~-~~~~~ 326 (419)
T PRK04043 254 --KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG---SVEQVVF-HGK-NNSSV 326 (419)
T ss_pred --CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC---CeEeCcc-CCC-cCceE
Confidence 234689999998888877654332223457999999888875432 37999998763 2222211 121 23478
Q ss_pred CCCCCEEEE
Q 016318 288 NEKGEFWVA 296 (391)
Q Consensus 288 d~~G~lwva 296 (391)
+++|+..+-
T Consensus 327 SPDG~~Ia~ 335 (419)
T PRK04043 327 STYKNYIVY 335 (419)
T ss_pred CCCCCEEEE
Confidence 888884443
No 91
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.79 E-value=0.056 Score=57.83 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=92.7
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
-.+++++++|+.+.++..|+.|..|+...... ... .... +. .... ......++++++..++..++..
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~-~~~~-------~~--~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGR-DIHY-------PV--VELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccc-cccc-------ce--EEec-ccCceeeEEeccCCCCEEEEEe
Confidence 45789999999888999999999997541000 000 0000 00 0000 1123456777653344444433
Q ss_pred CCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
..| |..+|..+++........ ......+++.+ +|+++++.+. +|.+..||..+++..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSI 611 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEE
Confidence 444 777788776433221111 13467888886 6787777643 578888998776543
Q ss_pred EeccCCCCcceEEEc-cCCCEEEEEeCCCCeEEEEEecc
Q 016318 229 VLLRNLQFPNGLSLS-KDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 229 ~~~~~~~~~ngia~~-~d~~~l~v~et~~~~I~~~~~~g 266 (391)
...........+++. ++++.+.++ +..+.|..+++..
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~~latg-s~dg~I~iwD~~~ 649 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGRSLAFG-SADHKVYYYDLRN 649 (793)
T ss_pred EEEecCCCeEEEEEeCCCCCEEEEE-eCCCeEEEEECCC
Confidence 332222344566674 467755444 6678898888754
No 92
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.77 E-value=0.0033 Score=57.99 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=93.1
Q ss_pred eEEEccCCCeeEEEec-----CCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 73 SMAFDPLGRGPYTGVA-----DGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~-----~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
.-++++||+.+|++-. .|.|-.+|.. .+..+...+ ..+--|+-+.+++++..|.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~--------------------s~GIGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP--------------------SHGIGPHELLLMPDGETLV 114 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec--------------------CCCcChhhEEEcCCCCEEE
Confidence 3467889998898754 3888888877 444443222 1133499999998444899
Q ss_pred EEECCC------------------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 147 IADAYF------------------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 147 V~d~~~------------------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
|++.+- .|..+|..+|++..-....+.....+...|+++.+|.+|++.....-.. +
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-~----- 188 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG-D----- 188 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC-c-----
Confidence 986421 2444444555422211111112235788999999999999963211000 0
Q ss_pred cccCCCceEEEEeCCCCeEEEec------cCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLL------RNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~------~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
..--|..+.. ++..+.+. ..+ .+.-.|+++.+++.+.++.-..+++..++.+
T Consensus 189 ----~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 189 ----APPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred ----cCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 0011222322 22222221 112 3556899999999888887677788888643
No 93
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.028 Score=55.43 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=57.0
Q ss_pred cceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC--CCeEEEeccCCCCcceEEEccCCCEEEEEeCC-
Q 016318 180 NDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT--TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS- 255 (391)
Q Consensus 180 ~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~- 255 (391)
...+..+||+ |+++... .+.-.++.++.. +++.+.+..........+++|||+.|+++...
T Consensus 284 ~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 3568899996 6665421 112357777653 34444443333334467899999988876543
Q ss_pred -CCeEEEEEeccccCccceeecccCCCCCceEeCCCCCE
Q 016318 256 -VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEF 293 (391)
Q Consensus 256 -~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~l 293 (391)
..+|+++++++. +.+.+...++...+...+++|+.
T Consensus 349 g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 349 GVRQICVYDLATG---RDYQLTTSPENKESPSWAIDSLH 384 (428)
T ss_pred CCcEEEEEECCCC---CeEEccCCCCCccceEECCCCCE
Confidence 347999987653 33333322333456777888873
No 94
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.74 E-value=0.015 Score=52.64 Aligned_cols=194 Identities=14% Similarity=0.182 Sum_probs=116.6
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~ 151 (391)
.+.|+|+|..+.++..|..|+-|+-. ..+.+... ....+...++.+.+++..++-+...
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------------------kgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL--------------------KGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeee--------------------ccccceeEeeeeccCCCEEEEecCC
Confidence 45789999988889999999999743 22222211 1124667788888844445556566
Q ss_pred CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
+.+..+|.++|+...--.. ...+.|.+...+.|-..+.+. ..++.+-.||..+++.....
T Consensus 112 k~v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~Sg----------------sdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSG----------------SDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred ceEEEEecccceeeehhcc----ccceeeecCccccCCeEEEec----------------CCCceEEEEeecccchhhcc
Confidence 7899999999865432111 124677777666775555543 34678888998766554444
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCC---CCceEeCCCCCEEEEEcCCCchhhhhh
Q 016318 232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRTNEKGEFWVAIHCRRSLYSHLM 308 (391)
Q Consensus 232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~---p~~i~~d~~G~lwva~~~~~~~~~~~l 308 (391)
+.-..-..+++..++.-+..+ .-++.|..+++... +....+.|. ..+|...++|.+..+..-...+..+.+
T Consensus 172 ~~kyqltAv~f~d~s~qv~sg-gIdn~ikvWd~r~~-----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISG-GIDNDIKVWDLRKN-----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred ccceeEEEEEecccccceeec-cccCceeeeccccC-----cceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 333344566666655534433 33455666654211 111122333 346778888888877665555555555
Q ss_pred hcCc
Q 016318 309 ALYP 312 (391)
Q Consensus 309 ~~~~ 312 (391)
+++-
T Consensus 246 rp~~ 249 (338)
T KOG0265|consen 246 RPFA 249 (338)
T ss_pred cccC
Confidence 5543
No 95
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.023 Score=50.77 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
++.+|+++....|+.+|..+|+..--.. .++ ++..+ ....++.+|+.... ++++.+|
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~-~~~~~---~~~~~~~v~v~~~~------------------~~l~~~d 92 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFD-LPG-PISGA---PVVDGGRVYVGTSD------------------GSLYALD 92 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEE-CSS-CGGSG---EEEETTEEEEEETT------------------SEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEee-ccc-cccce---eeecccccccccce------------------eeeEecc
Confidence 7899999877779999998886432211 111 11111 23346788888743 6899999
Q ss_pred CCCCeEEEec-c-C---CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 222 PTTKQTTVLL-R-N---LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 222 ~~~~~~~~~~-~-~---~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
..+|+..--. . . ...........+++.++++.. ++.|+.++++
T Consensus 93 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred cCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence 8888764331 1 1 111112222234666777754 6788888855
No 96
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.73 E-value=0.014 Score=51.14 Aligned_cols=235 Identities=12% Similarity=0.090 Sum_probs=124.8
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
.+-+..+|+.-.++..+..|--|++.+-..+...+. .+...+.++...++-.+--+...+
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg--------------------hG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG--------------------HGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecC--------------------CCceeeeccccccccccccCCCCc
Confidence 456778999666777777777777762222211111 122344444444222232222234
Q ss_pred CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-
Q 016318 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL- 231 (391)
Q Consensus 153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~- 231 (391)
-++.+|..||++-+-..... ...|.+.+..+..+.++.+- +..+-.||-.+...+.+.
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHL----AQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred eEEEEEcccCeeeeeccccc----ceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccch
Confidence 59999999997654333222 35788999888888877643 346777887666554432
Q ss_pred --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-CceEeCCCCCEEEEEcCCCch-hh--
Q 016318 232 --RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-DNVRTNEKGEFWVAIHCRRSL-YS-- 305 (391)
Q Consensus 232 --~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-~~i~~d~~G~lwva~~~~~~~-~~-- 305 (391)
+-......|.+ .+. .+++.+..+++.+|++.- | ..+.+.-|.| ..+.++++|++-++..-.... ++
T Consensus 141 ldea~D~V~Si~v--~~h-eIvaGS~DGtvRtydiR~---G--~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 141 LDEAKDGVSSIDV--AEH-EIVAGSVDGTVRTYDIRK---G--TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred hhhhcCceeEEEe--ccc-EEEeeccCCcEEEEEeec---c--eeehhhcCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence 11122233444 344 567777788999998753 2 2233323444 678999999976664433222 11
Q ss_pred ---hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC-CCCEEEEEeC
Q 016318 306 ---HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP-EGKILQVLED 356 (391)
Q Consensus 306 ---~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~~ 356 (391)
..|..|....+.-.++.--.......++++...+.+...|. ++.++..+..
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 13333433333333332222222233445555566665553 4444444443
No 97
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.032 Score=55.52 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=114.9
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
--++.+.++|+.+.++..++.+..++...... . . .. ..........+++|.+ ++...++.+
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~-~------~~----------~l~~h~~~v~~~~fs~-d~~~l~s~s 222 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N-L------LR----------ELSGHTRGVSDVAFSP-DGSYLLSGS 222 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-h-h------hc----------cccccccceeeeEECC-CCcEEEEec
Confidence 34467788999777777777666665531110 0 0 00 0111123356889998 677655544
Q ss_pred CC-CeEEEeC-CCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 151 YF-GLMKVGP-EGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 151 ~~-gl~~~d~-~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
.. .|..+|. +.+. ++.+..+ ....+.+++.++|++.++.+. ++.+..+|..+++.
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGEC 280 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeE
Confidence 43 4777777 3322 3333221 235699999999998888754 57888999988776
Q ss_pred EEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc--CCCCCceEeCCCCCEEEEEcCCCch
Q 016318 228 TVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL--PGYPDNVRTNEKGEFWVAIHCRRSL 303 (391)
Q Consensus 228 ~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~--~g~p~~i~~d~~G~lwva~~~~~~~ 303 (391)
...... -..-+++++++|++.++.+ ...+.|..+++......-.+.+... +..-..+.++++|.+.+.....+.+
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL 358 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence 554433 3467789999999966665 6677888887654321101222221 1112567888999866555554443
No 98
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.027 Score=55.62 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=82.7
Q ss_pred cceEEEecCCCcEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeee
Q 016318 133 PLGLRFDKKTGDLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~ 208 (391)
.....+++++..|..+.... .|+.+|..+++.+.+.. ..+ ....+++.+||+ |+++.+.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~------------ 268 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK------------ 268 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec------------
Confidence 45678888444454443322 39999998887655532 222 123578899996 5554321
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCceE
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDNVR 286 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~ 286 (391)
.+.-.|+.+|.++++.+.+..........+++|||+.++++... ..+||.++..+. ..+.+ ...+ .+..
T Consensus 269 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~~l-~~~~--~~~~ 339 (429)
T PRK01742 269 ---DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---GASLV-GGRG--YSAQ 339 (429)
T ss_pred ---CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEe-cCCC--CCcc
Confidence 11235888998888877776544455678999999987776433 346777776542 12222 2112 3456
Q ss_pred eCCCCCEEEE
Q 016318 287 TNEKGEFWVA 296 (391)
Q Consensus 287 ~d~~G~lwva 296 (391)
++++|+..+.
T Consensus 340 ~SpDG~~ia~ 349 (429)
T PRK01742 340 ISADGKTLVM 349 (429)
T ss_pred CCCCCCEEEE
Confidence 7888874433
No 99
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.70 E-value=6.8e-05 Score=43.25 Aligned_cols=28 Identities=14% Similarity=0.530 Sum_probs=25.1
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318 234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKY 262 (391)
Q Consensus 234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~ 262 (391)
+..|.||+++++|+ +||+|+.++||++|
T Consensus 1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 35799999998888 99999999999986
No 100
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.69 E-value=0.002 Score=61.55 Aligned_cols=191 Identities=12% Similarity=0.157 Sum_probs=118.5
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.-.++.+..+|..+.+++.|..|--||.+.-.....+ +..-.|..+.+.+++.+++++.
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f---------------------~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF---------------------HLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceEEEEE---------------------ecCCCceeeecCCCCCcEEEEe
Confidence 4456667777776777777777766666521111111 1234577888888654666654
Q ss_pred CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
.. +.|..+|..++++-.-. +..+...+++.+-++|.-+++++- .+.+..|+.......
T Consensus 319 ~sd~ki~~wDiRs~kvvqeY----d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~i 377 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSGKVVQEY----DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPI 377 (503)
T ss_pred cCCCcEEEEeccchHHHHHH----HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccc
Confidence 44 55999999888633211 123456788999889888887643 344555554433322
Q ss_pred Eec--cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc-cCccceeecc--cCCCCCceEeCCCCCEEEEEcCCCch
Q 016318 229 VLL--RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE-KAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHCRRSL 303 (391)
Q Consensus 229 ~~~--~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~-~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~ 303 (391)
.+. ..+..--.++++|++. .+.+.+-.++|..|...-. +....+.|.. .+|++-.+.+++||.+.+...+...+
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred hhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence 221 1122223688999999 6677888899999875433 2333445553 57888899999999988776655444
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.0013 Score=62.58 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=109.5
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
+=|.+.+.++++.|.+....|.|..+....-..+.. | ..-|...+++|+.++..||++.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s--------~-------------KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS--------F-------------KIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe--------e-------------eeccEEeeEEEecCCcEEEEEc
Confidence 456778888998777777788888775541111100 1 1246678899998566688877
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe---
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ--- 226 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--- 226 (391)
.+..|+.+|.....+...... +|. ..-..++...+|. |++..+ ..|-|-.||.++--
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D-~G~--v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVD-DGS--VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFAST 423 (514)
T ss_pred CCceEEEEecCCcceEEEEee-cCc--cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccC
Confidence 666799999987654433222 121 1345577778888 555422 25777788854321
Q ss_pred -EEEe--ccCC-CCcceEEEccCCCEEEEEeCCC-CeEEEEEeccccCccceeecccC------CCCCceEeCCCCCEEE
Q 016318 227 -TTVL--LRNL-QFPNGLSLSKDKSFFVFCEGSV-GRLHKYWLIGEKAGNLEAFAILP------GYPDNVRTNEKGEFWV 295 (391)
Q Consensus 227 -~~~~--~~~~-~~~ngia~~~d~~~l~v~et~~-~~I~~~~~~g~~~g~~~~~~~~~------g~p~~i~~d~~G~lwv 295 (391)
.+.+ .+.+ ...+.++|++|.+.|.++.+.. +.+..+++ ....+|.+.| |.+..+++++.|.+..
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence 1111 1222 2356889999999877775433 34444443 2345666544 4678899999776543
No 102
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.67 E-value=0.0003 Score=52.74 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=47.7
Q ss_pred eEEEecCCCcEEEEECC-----------------CC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeC
Q 016318 135 GLRFDKKTGDLYIADAY-----------------FG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDS 195 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~-----------------~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~ 195 (391)
++.+++++|.+|++|+. .| |+++||.|++.+.+... +.+||+|++++|+. +.|+++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence 46777744899999862 13 99999999998888654 56999999999996 777775
Q ss_pred CCcccchhheeeecccCCCceEEEEeCC
Q 016318 196 STNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
. ..||.+|-.+
T Consensus 77 ~-----------------~~Ri~rywl~ 87 (89)
T PF03088_consen 77 G-----------------RYRILRYWLK 87 (89)
T ss_dssp G-----------------GTEEEEEESS
T ss_pred c-----------------CceEEEEEEe
Confidence 4 3688888543
No 103
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.63 E-value=0.019 Score=54.49 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=78.9
Q ss_pred ccceEEEecCCCcEEEEECCC------C-eEEEeCCCCeeEEceecc---------CC-CcccCCcceeecCCCC-EEEE
Q 016318 132 RPLGLRFDKKTGDLYIADAYF------G-LMKVGPEGGLATSLATEA---------EG-VPLRFTNDLDIDDEGN-VYFT 193 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~~------g-l~~~d~~~g~~~~~~~~~---------~~-~~~~~~~~l~~d~~G~-ly~t 193 (391)
.+-||++.+ +|.+||++.+. . |++++.++...+.+..+. .+ ..-....+|++.++|+ ||++
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 345899965 89999999877 4 999999854444442111 11 1234677899999998 8888
Q ss_pred eCCCcccchhheeeecccCCCceEEEEeCCCCe--EEEe---cc------CCCCcceEEEccCCCEEEEEeCC-------
Q 016318 194 DSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ--TTVL---LR------NLQFPNGLSLSKDKSFFVFCEGS------- 255 (391)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~---~~------~~~~~ngia~~~d~~~l~v~et~------- 255 (391)
..+...+-... .-......-++++||+.+.. ...+ .+ ....+..++.-+|++ ++|-|..
T Consensus 165 ~E~~l~~d~~~--~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 165 MESPLKQDGPR--ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGN 241 (326)
T ss_pred ECccccCCCcc--cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccc
Confidence 75532211100 00011112478999987622 2222 22 223445566777888 8888876
Q ss_pred CCeEEEEEecc
Q 016318 256 VGRLHKYWLIG 266 (391)
Q Consensus 256 ~~~I~~~~~~g 266 (391)
..+|+++++.+
T Consensus 242 ~~ri~~v~l~~ 252 (326)
T PF13449_consen 242 YKRIYRVDLSD 252 (326)
T ss_pred eEEEEEEEccc
Confidence 34677777654
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.63 E-value=0.0049 Score=59.02 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=58.1
Q ss_pred eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEE
Q 016318 216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFW 294 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lw 294 (391)
.|..||..+++.+....++...-.+.+++||+++.+++ .+..||.++++. |+.+.... ..|+..++...++++ |
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididn---gnv~~idkS~~~lItdf~~~~nsr-~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN---GNVRLIDKSEYGLITDFDWHPNSR-W 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecC---CCeeEecccccceeEEEEEcCCce-e
Confidence 68889999999999988888888999999999888884 467899999875 33443332 335566677777664 5
Q ss_pred EEEc
Q 016318 295 VAIH 298 (391)
Q Consensus 295 va~~ 298 (391)
+|-.
T Consensus 458 iAYa 461 (668)
T COG4946 458 IAYA 461 (668)
T ss_pred EEEe
Confidence 5543
No 105
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.62 E-value=0.0098 Score=56.01 Aligned_cols=189 Identities=9% Similarity=0.023 Sum_probs=108.4
Q ss_pred EEEccCCCeeEEEecCCEEEEE--eCC-ceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEE
Q 016318 74 MAFDPLGRGPYTGVADGRILFW--DGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIAD 149 (391)
Q Consensus 74 i~~d~~G~~ly~~~~~g~I~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d 149 (391)
+.++++|+.+-+++.|.....| ..+ .++.+.. |. ....| .-|.++|++..|..|.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t--------lv-------------gh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT--------LV-------------GHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeee--------ee-------------cccCceEEEEECCCCCeEEecC
Confidence 4577889877777777544444 333 3222211 11 01223 4578899444444443
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV 229 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 229 (391)
...-+...|.++|.........- ...+...+--|||.=+++.+. ++.++.+|.++.....
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~pDg~~~V~Gs~-----------------dr~i~~wdlDgn~~~~ 348 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCPDGFRFVTGSP-----------------DRTIIMWDLDGNILGN 348 (519)
T ss_pred chHheeeccCCcchhhhhcccCc---CCCcceeEEccCCceeEecCC-----------------CCcEEEecCCcchhhc
Confidence 34558888999887655433211 124555666778766666543 5678888876554333
Q ss_pred eccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcccee-ecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318 230 LLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-FAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH 306 (391)
Q Consensus 230 ~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~-~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~ 306 (391)
. ++. +....+++++||++++... ...+|..|+.... .+. ..........+.++.+|.+.+..-......+|
T Consensus 349 W-~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~----~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 349 W-EGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR----VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred c-cccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh----hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 3 222 2345799999999887764 4567888875431 111 11111224578889999977765555555444
Q ss_pred hhh
Q 016318 307 LMA 309 (391)
Q Consensus 307 ~l~ 309 (391)
.+.
T Consensus 423 Dl~ 425 (519)
T KOG0293|consen 423 DLE 425 (519)
T ss_pred ecc
Confidence 443
No 106
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.60 E-value=0.029 Score=51.32 Aligned_cols=227 Identities=16% Similarity=0.197 Sum_probs=119.2
Q ss_pred cCccceEEEecCCCcEEEEECCCC---eEEEeCCC--CeeEEceeccC---C-CcccCCcceeecCCCCEEEEeCCCccc
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFG---LMKVGPEG--GLATSLATEAE---G-VPLRFTNDLDIDDEGNVYFTDSSTNYQ 200 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~g---l~~~d~~~--g~~~~~~~~~~---~-~~~~~~~~l~~d~~G~ly~td~~~~~~ 200 (391)
.-.|+||++.+ .+-+||+|...+ +|-.++++ +....+.-.+. + .....|.++++.....+-++.... -.
T Consensus 22 L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~-~~ 99 (336)
T TIGR03118 22 LRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI-TG 99 (336)
T ss_pred ccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-cc
Confidence 55699999999 889999998876 34444221 11111211111 1 112356666665433322222110 00
Q ss_pred chhheeeecccCCCceEEEEeCCCCeE------EEeccC--CCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCc
Q 016318 201 RRNFMQLVFSAEDTGRVLKYDPTTKQT------TVLLRN--LQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAG 270 (391)
Q Consensus 201 ~~~~~~~~~~~~~~g~l~~~d~~~~~~------~~~~~~--~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g 270 (391)
-..|+. ...+|.|--|.+.-+.. .++... ..--.|+|+... +++||.++-.+++|-+|+-.-.+..
T Consensus 100 ~a~Fif----~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 100 PSRFLF----VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ceeEEE----EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Confidence 000111 12246777777643322 222211 122347777643 7889999999999999963211111
Q ss_pred cceeecc--cCC--CCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECC
Q 016318 271 NLEAFAI--LPG--YPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSP 346 (391)
Q Consensus 271 ~~~~~~~--~~g--~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~ 346 (391)
....|.+ +|. -|-||.- -.|++||+-........ -.+.+..++.|-.||.
T Consensus 176 ~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~-------------------------d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRN-------------------------DEVAGAGLGYVNVFTL 229 (336)
T ss_pred CCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCccc-------------------------ccccCCCcceEEEEcC
Confidence 1122443 332 2456643 45789997543211000 0123456688999999
Q ss_pred CCCEEEEEeCCCCCeeeceeEEE------EECCEEEEecCCCCeEEEEe
Q 016318 347 EGKILQVLEDSKGKVVKAISEVE------EKDGKLWMGSVLMPFVAVYD 389 (391)
Q Consensus 347 ~g~~~~~~~~~~g~~~~~is~~~------~~~g~Lylgs~~~~~i~~~~ 389 (391)
+|+.++.+.+. |........+. .-.|.|.+|.+..-.|..++
T Consensus 230 ~G~l~~r~as~-g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 230 NGQLLRRVASS-GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCcEEEEeccC-CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEec
Confidence 99999888542 22222111111 23488999999988888776
No 107
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.58 E-value=0.028 Score=50.24 Aligned_cols=174 Identities=20% Similarity=0.220 Sum_probs=89.7
Q ss_pred EEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCe
Q 016318 75 AFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGL 154 (391)
Q Consensus 75 ~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl 154 (391)
++..+|. +|+++.++.|+.++...-+..-... +. ......| ..+ ++.+||+...+.|
T Consensus 32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~------~~-----------~~~~~~~---~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFD------LP-----------GPISGAP---VVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTSEEEEEEE------CS-----------SCGGSGE---EEE--TTEEEEEETTSEE
T ss_pred EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEee------cc-----------cccccee---eec--ccccccccceeee
Confidence 4433454 9999999999999985222221111 00 0001112 232 6889999866679
Q ss_pred EEEeCCCCeeEEc-eecc-CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318 155 MKVGPEGGLATSL-ATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232 (391)
Q Consensus 155 ~~~d~~~g~~~~~-~~~~-~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~ 232 (391)
+.+|..+|++.-- .... +..........+++ ++.+|+... ++.|+.+|+++|+..--..
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEE
T ss_pred EecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEee
Confidence 9999888865432 1111 11112223334444 456777774 3789999999998733222
Q ss_pred CCCCc------------ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEE
Q 016318 233 NLQFP------------NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAI 297 (391)
Q Consensus 233 ~~~~~------------ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~ 297 (391)
. ..+ ++-.+..++ .+|++.. .+++..+++.. ++. .+....+.+.......++.+|++.
T Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~~-~w~~~~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 150 V-GEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GEK-LWSKPISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp S-STT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TEE-EEEECSS-ECECEECCCTEEEEEE
T ss_pred c-CCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEEECCC---CCE-EEEecCCCccCCceeeCCEEEEEe
Confidence 1 111 122222344 5888744 44556556543 322 232212223332334456677766
No 108
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.58 E-value=0.0053 Score=61.94 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=123.8
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecC--CC--------cccCCCCCCccccccccCccCccceE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSN--NR--------SELCNPKPIATSYLKNEHICGRPLGL 136 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~g~P~gi 136 (391)
++-.+..+.+++.++-.|..|..|.+|.-. +.+.+..... +. ....+........ ..-..+|-..|.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~-~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR-TLYGHSGPVYGC 457 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE-EeecCCCceeee
Confidence 344556677788877778888888877543 2222111000 00 0000100000000 111234556799
Q ss_pred EEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318 137 RFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
.|.| +.++.+..+..+ |+.++..+..+.. .. ......++.+.|.|..+.|. + +..
T Consensus 458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y--~G----H~~PVwdV~F~P~GyYFata-s--------------~D~ 515 (707)
T KOG0263|consen 458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIY--KG----HLAPVWDVQFAPRGYYFATA-S--------------HDQ 515 (707)
T ss_pred eecc-cccceeeccCCcceeeeecccceeEEEe--cC----CCcceeeEEecCCceEEEec-C--------------CCc
Confidence 9999 788888766533 6666655432221 11 11235667888887544444 3 355
Q ss_pred CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE-eccccCccceeecccCCCCCceEeCCCCC
Q 016318 214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGNLEAFAILPGYPDNVRTNEKGE 292 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~~~~~~~~~g~p~~i~~d~~G~ 292 (391)
+.+|+..|- +.-.+++...+..-..+.++|+.++ ++.....+-.|.| +.. ....++|....+-...+++++.|+
T Consensus 516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y--~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNY--VATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeeccc-CCchhhhcccccccceEEECCcccc--cccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCc
Confidence 667887775 4556667777778888999999984 3433334444444 321 245677764444456789999998
Q ss_pred EEEEEcCCCchhhhhhhcCccceeeee
Q 016318 293 FWVAIHCRRSLYSHLMALYPKIRHFLL 319 (391)
Q Consensus 293 lwva~~~~~~~~~~~l~~~~~~~~~~~ 319 (391)
+.+.....+.+..|.++.-.....++.
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhc
Confidence 776666666665555544333333333
No 109
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.51 E-value=0.00096 Score=65.42 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=78.6
Q ss_pred cCccceEEEecCCCcEEEEECCC-----------------CeEEEeCCCC-------eeEEceeccCC------------
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYF-----------------GLMKVGPEGG-------LATSLATEAEG------------ 173 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~-----------------gl~~~d~~~g-------~~~~~~~~~~~------------ 173 (391)
..||-++++.+..+++|++...+ +|+++-+.++ +.+.+...-+.
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 57899999998777899985432 3888887765 45555421111
Q ss_pred -CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEE
Q 016318 174 -VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFV 250 (391)
Q Consensus 174 -~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~ 250 (391)
..+..|++|++|+.|+||+.+.++.-..++++.. -..+.+=++++++++.+.... ..-.|++++||++.++
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G------~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF 569 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRG------VTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF 569 (616)
T ss_pred cccccCCCceEECCCCCEEEEecCCCCccCccccc------ccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence 1256699999999999999975532222211111 114455567777777765443 3667999999999999
Q ss_pred EEe
Q 016318 251 FCE 253 (391)
Q Consensus 251 v~e 253 (391)
|.-
T Consensus 570 V~v 572 (616)
T COG3211 570 VNV 572 (616)
T ss_pred EEe
Confidence 874
No 110
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.007 Score=54.92 Aligned_cols=164 Identities=12% Similarity=0.175 Sum_probs=91.4
Q ss_pred ccccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEee----cCCCcccCCCCCCccccccccCccCccceE
Q 016318 64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFT----SNNRSELCNPKPIATSYLKNEHICGRPLGL 136 (391)
Q Consensus 64 ~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi 136 (391)
....+.-||+|+.-.+|+...+.-.+++++.+.-+ ....+... ......+ +| =-|+
T Consensus 124 PL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N----------------~G-fEGl 186 (316)
T COG3204 124 PLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN----------------KG-FEGL 186 (316)
T ss_pred cccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCC----------------cC-ceee
Confidence 33447789999988777655556667777776433 11111110 0000001 11 1389
Q ss_pred EEecCCCcEEEEECCC--CeEEEeCCCCeeEEcee--ccCC--CcccCCcceeecC-CCCEEEEeCCCcccchhheeeec
Q 016318 137 RFDKKTGDLYIADAYF--GLMKVGPEGGLATSLAT--EAEG--VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~~--gl~~~d~~~g~~~~~~~--~~~~--~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
++|+.+++|||+-..+ +|++++-.......... +... .-..-..++.+++ .|++++-..-
T Consensus 187 A~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E------------- 253 (316)
T COG3204 187 AWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE------------- 253 (316)
T ss_pred ecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC-------------
Confidence 9999888999997664 57777632211111111 1110 1123345566665 4565554321
Q ss_pred ccCCCceEEEEeCCCCeEEEe---------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 210 SAEDTGRVLKYDPTTKQTTVL---------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~---------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
++.|+..|.+..-...+ ......+-||+.+.+|+ ||+. +..+..+|+.
T Consensus 254 ----Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIv-SEPnlfy~F~ 310 (316)
T COG3204 254 ----SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIV-SEPNLFYRFT 310 (316)
T ss_pred ----CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEE-ecCCcceecc
Confidence 35677777654433322 13345788999999998 8877 4567788876
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.43 E-value=0.096 Score=50.80 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=96.2
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
--+++|.++|+ ..++..+|.|..|++. ++..-.. . ..+-..+++... +|.|.-+
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---------------------a-H~ggv~~L~~lr-~GtllSG 304 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH---------------------A-HDGGVFSLCMLR-DGTLLSG 304 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee---------------------e-cCCceEEEEEec-CccEeec
Confidence 34788888998 8899999999999876 2111111 1 123345566665 6777653
Q ss_pred ECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
.-.+-|...|-. .+.+.. +.+ .++..+.-++.... .||+.+++ +.|+.=..+++-.
T Consensus 305 gKDRki~~Wd~~---y~k~r~~elP-e~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 305 GKDRKIILWDDN---YRKLRETELP-EQFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFT 361 (626)
T ss_pred CccceEEecccc---ccccccccCc-hhcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCce
Confidence 322336666522 222211 111 12345666665433 49999865 3455444444433
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-CceEeCCCCCEEEEEcCCCc
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-DNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-~~i~~d~~G~lwva~~~~~~ 302 (391)
.+.......-.|++.+|+.+ .+++ ....+-.++|- + .+. .+...-+.| ....+++.|.+-+++..++.
T Consensus 362 ~~v~gh~delwgla~hps~~-q~~T-~gqdk~v~lW~--~--~k~-~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w 430 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKN-QLLT-CGQDKHVRLWN--D--HKL-EWTKIIEDPAECADFHPSGVVAVGTATGRW 430 (626)
T ss_pred EEEEecccceeeEEcCCChh-heee-ccCcceEEEcc--C--Cce-eEEEEecCceeEeeccCcceEEEeeccceE
Confidence 33333334667999999888 6666 33445555552 1 111 122111112 34667788866677666654
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.038 Score=57.02 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=94.6
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
.|=..|++|++|..|+++..||-|.+|+...-.+-.. .+| .......+++.. .+.+.++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~-------------~~g~~v~~ia~~--s~~f~~~ 72 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TID-------------ISGELVSSIACY--SNHFLTG 72 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhh-------------ccCceeEEEeec--ccceEEe
Confidence 3667899999999999999999998886541100000 001 011223455554 3456666
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
...+-+.++....++...+...+. ...++++++.+|+..++.+. +-.|-..+..+...+
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQE 131 (933)
T ss_pred eccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchh
Confidence 555667777766554443322221 13578899999987666543 224555555444444
Q ss_pred EeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 229 VLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 229 ~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
....+...| .++.++|++++|-++ +.++.+..+++..
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQD 169 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEccc
Confidence 444444444 489999999977776 5678888888764
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.42 E-value=0.047 Score=51.86 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=63.0
Q ss_pred CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE-EeccCC--CCcceEEEccCCCEEEEEeCC
Q 016318 179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT-VLLRNL--QFPNGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 179 ~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~--~~~ngia~~~d~~~l~v~et~ 255 (391)
.+++...+.|..+++.+. ++....+|..++..- +..+.- -.-...+++|||. |+.+-+.
T Consensus 306 V~~ls~h~tgeYllsAs~-----------------d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~ 367 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASN-----------------DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTP 367 (506)
T ss_pred ceeeeeccCCcEEEEecC-----------------CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCC
Confidence 567777788876666543 344444555555432 222211 1345688999997 7777676
Q ss_pred CCeEEEEEeccccCccceeecccCC---CCCceEeCCCCCEEEEEcC-CCchhhhhhhc
Q 016318 256 VGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNEKGEFWVAIHC-RRSLYSHLMAL 310 (391)
Q Consensus 256 ~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~~G~lwva~~~-~~~~~~~~l~~ 310 (391)
++.+..++++.. ...+.+|| -...|.++++| +|.++.. ...+..|.|++
T Consensus 368 d~~vkiwdlks~-----~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 368 DGVVKIWDLKSQ-----TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK 420 (506)
T ss_pred CceEEEEEcCCc-----cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh
Confidence 666666666542 12333444 34678999888 5655544 33365555554
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.41 E-value=0.091 Score=53.31 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=108.2
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
.--.++++..+.. +..+..++.|..|+.+...-+... +|+..++-.|-+ +++..|.
T Consensus 374 ~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi----------------------~~~y~l~~~Fvp-gd~~Iv~ 429 (888)
T KOG0306|consen 374 SDVRSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI----------------------TCGYILASKFVP-GDRYIVL 429 (888)
T ss_pred hheeEEEeecCce-eeeecCCCcEEEEEccCcceeEEe----------------------ccccEEEEEecC-CCceEEE
Confidence 3456788886655 555555677888877633333222 267778888888 5665555
Q ss_pred ECCCC-eEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC----
Q 016318 149 DAYFG-LMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP---- 222 (391)
Q Consensus 149 d~~~g-l~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~---- 222 (391)
...+| |..+|..... ++.+ ...+| ....|+..+||.=++|.+. +..|-.||-
T Consensus 430 G~k~Gel~vfdlaS~~l~Eti-~AHdg----aIWsi~~~pD~~g~vT~sa-----------------DktVkfWdf~l~~ 487 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLVETI-RAHDG----AIWSISLSPDNKGFVTGSA-----------------DKTVKFWDFKLVV 487 (888)
T ss_pred eccCCceEEEEeehhhhhhhh-hcccc----ceeeeeecCCCCceEEecC-----------------CcEEEEEeEEEEe
Confidence 45555 8888766432 2222 12222 3566778888776776643 122222221
Q ss_pred -CCCeE-EEe--c--cCCC---CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC--CC-CceEeCCC
Q 016318 223 -TTKQT-TVL--L--RNLQ---FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG--YP-DNVRTNEK 290 (391)
Q Consensus 223 -~~~~~-~~~--~--~~~~---~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g--~p-~~i~~d~~ 290 (391)
..+.. +++ . ..+. ..-.+.+|||+++|.|+ --++.+..|-++. .+.|..+.| +| -.|.+++|
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDt-----lKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDT-----LKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecc-----eeeeeeecccccceeEEeccCC
Confidence 11111 111 0 1112 34478899999988877 5678899988764 455555554 34 46777888
Q ss_pred CCEEEEEcCCCchhh
Q 016318 291 GEFWVAIHCRRSLYS 305 (391)
Q Consensus 291 G~lwva~~~~~~~~~ 305 (391)
+.+.++....+++..
T Consensus 562 SklivTgSADKnVKi 576 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKI 576 (888)
T ss_pred cCeEEeccCCCceEE
Confidence 888888776666544
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.40 E-value=0.0091 Score=57.74 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=115.9
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
--.++++|+.|-.+++|+.|-.|-.||-. ....|...- .|+ +.....+.+++.++.+
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-----P~E--------------~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-----PCE--------------THQINSLQYSVTGDQI 229 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-----ccc--------------ccccceeeecCCCCeE
Confidence 34578899999999999999999988765 222232211 122 4455677888744445
Q ss_pred EEEECCCCeEEEeCCCCeeEEceeccC--------CCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCce
Q 016318 146 YIADAYFGLMKVGPEGGLATSLATEAE--------GVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~--------~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
+|.....-.-.+|.++-++-.+..... .......+.....|+. +.++|.+. .++-|
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlR 294 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLR 294 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEE
Confidence 555433336667777654433322100 0000111222223322 23333321 22334
Q ss_pred EEEEeCCCCeEEEeccCC-----CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---ccCC-CCCceEe
Q 016318 217 VLKYDPTTKQTTVLLRNL-----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---ILPG-YPDNVRT 287 (391)
Q Consensus 217 l~~~d~~~~~~~~~~~~~-----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~~g-~p~~i~~ 287 (391)
++-.+....+..++.... -.+...++++|++ ++.+....+.|..++. |...-+..... .++| -..+|.+
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEe
Confidence 444444334555554322 1456788999999 4444455566655543 32222222222 2443 3567999
Q ss_pred CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccc
Q 016318 288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISA 325 (391)
Q Consensus 288 d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 325 (391)
+.+|+++++-.......+|.|+.+..--.....|+.+.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~ 410 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF 410 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccC
Confidence 99999998877666666666666544333333444443
No 116
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.34 E-value=0.11 Score=46.85 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=56.1
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~ 255 (391)
.+.++++..+||++.++.+. ++.+..+|..+++.+... ..-..--++++++|.+ -.|+.+.
T Consensus 64 H~v~dv~~s~dg~~alS~sw-----------------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSASW-----------------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred eEecceEEccCCceEEeccc-----------------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence 47899999999999998754 577888999987665544 3345667899999998 5567677
Q ss_pred CCeEEEEEeccc
Q 016318 256 VGRLHKYWLIGE 267 (391)
Q Consensus 256 ~~~I~~~~~~g~ 267 (391)
...|..++..|.
T Consensus 126 DkTiklwnt~g~ 137 (315)
T KOG0279|consen 126 DKTIKLWNTLGV 137 (315)
T ss_pred cceeeeeeeccc
Confidence 778888876663
No 117
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.34 E-value=0.1 Score=46.52 Aligned_cols=189 Identities=16% Similarity=0.153 Sum_probs=106.6
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
.+....-.+|+...+|..+-.++.++.+..++-+.. .+...-.+++ ..+..-.++.++....
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~g-----------------h~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRG-----------------HTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccC-----------------CCcchhhheeCCCCCc
Confidence 455667789999999998999999998888866521 1111100000 0112233455543334
Q ss_pred E-EEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 145 L-YIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 145 L-~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
+ .++.+.+-+..+|...++...-... .+. -..+.-.|+|+-.+... .+.+|..+|..
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~e----ni~i~wsp~g~~~~~~~-----------------kdD~it~id~r 136 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIET-KGE----NINITWSPDGEYIAVGN-----------------KDDRITFIDAR 136 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeec-cCc----ceEEEEcCCCCEEEEec-----------------CcccEEEEEec
Confidence 4 4444446688888776653322111 111 12244456665333321 24577778876
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCc---eEeCCCCCEEEEEcC
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN---VRTNEKGEFWVAIHC 299 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~---i~~d~~G~lwva~~~ 299 (391)
+.+...-.+...+.|-+++..+++ +++.+++.+.|..+... ..+....+...|.| |.+|++|+++.....
T Consensus 137 ~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 137 TYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred ccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCCCceEeeccc
Confidence 655544444445788899998888 77776776766655321 23333333344543 778999997754333
No 118
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.33 E-value=0.012 Score=59.51 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=110.3
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEEEEECC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLYIADAY 151 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~V~d~~ 151 (391)
+..+.|+.+.+..++.|+.+.-|..+.+........ ...|. .+.|.| . ..|++++.
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---------------------H~~PVwdV~F~P-~-GyYFatas 512 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---------------------HLAPVWDVQFAP-R-GYYFATAS 512 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecC---------------------CCcceeeEEecC-C-ceEEEecC
Confidence 456788999889999999888887774444332221 12222 344554 2 23333332
Q ss_pred -CC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 152 -FG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 152 -~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
.+ ||..|.. .-.+.++.+ +.-.+.+.+.|+.+..+|.++ +..+-.||..+|..
T Consensus 513 ~D~tArLWs~d~~-~PlRifagh-----lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-KPLRIFAGH-----LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNS 569 (707)
T ss_pred CCceeeeeecccC-Cchhhhccc-----ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcE
Confidence 11 4444331 112222222 234556788999887776654 34566778777765
Q ss_pred EEeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhhh
Q 016318 228 TVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSH 306 (391)
Q Consensus 228 ~~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~ 306 (391)
..+..+- .....++++|+|++|- +....+.|..+++.+.. ....+....+..+.|.++.+|+++++.....++.+|
T Consensus 570 VRiF~GH~~~V~al~~Sp~Gr~La-Sg~ed~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 570 VRIFTGHKGPVTALAFSPCGRYLA-SGDEDGLIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred EEEecCCCCceEEEEEcCCCceEe-ecccCCcEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence 4444443 3446899999999654 33456677777765421 111222224567789999999999998887777665
Q ss_pred hh
Q 016318 307 LM 308 (391)
Q Consensus 307 ~l 308 (391)
.+
T Consensus 647 D~ 648 (707)
T KOG0263|consen 647 DL 648 (707)
T ss_pred Ec
Confidence 33
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.32 E-value=0.011 Score=60.31 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=110.0
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
...+++++.=||..++|...|.|-+++.+ +...-..+ ......+...|+++|. -+++.|+
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~------------------~~~ah~~~V~gla~D~-~n~~~vs 510 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG------------------DSPAHKGEVTGLAVDG-TNRLLVS 510 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc------------------cCccccCceeEEEecC-CCceEEE
Confidence 45688899899989999999999999987 32221111 0011234467999997 7888888
Q ss_pred ECCCCeEEE-eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~~gl~~~-d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
....|++++ |..+.....-.+. + ..+..+.-.....+.+.. ..+-.|..||..|.++
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l--~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRL--G---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKV 568 (910)
T ss_pred ccCcceEEEEecCCcceeeeecc--C---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhh
Confidence 878886665 4443321110000 0 112222222221111111 1123678888766554
Q ss_pred -EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318 228 -TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 228 -~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~ 300 (391)
+.+......-|.+++||||+||..+ .....|..+++... .....+. ++.-+.++.++++|.+..+.+..
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~--~lID~~~-vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTG--TLIDGLL-VDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCc--ceeeeEe-cCCcceeeEECCCCCEEEEEEec
Confidence 2233334577899999999988776 45678888886432 2222222 22335678899999888776654
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.31 E-value=0.052 Score=52.58 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=108.9
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
++-.|..|+.. .+. +|+|+..+.|++=+-. .+...... ....-+|++.++ ..++
T Consensus 328 ~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~g----------------------h~delwgla~hp-s~~q 382 (626)
T KOG2106|consen 328 QFGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQG----------------------HGDELWGLATHP-SKNQ 382 (626)
T ss_pred hcCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEe----------------------cccceeeEEcCC-Chhh
Confidence 34455666654 555 9999998888876544 33322211 122356889988 5677
Q ss_pred EEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 146 YIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 146 ~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
|+.... +.+...+ + .+.+ .....+ .....+++++.|.+-+... +|+.+.+|.++
T Consensus 383 ~~T~gqdk~v~lW~-~-~k~~-wt~~~~----d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~ 437 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN-D-HKLE-WTKIIE----DPAECADFHPSGVVAVGTA------------------TGRWFVLDTET 437 (626)
T ss_pred eeeccCcceEEEcc-C-Ccee-EEEEec----CceeEeeccCcceEEEeec------------------cceEEEEeccc
Confidence 766554 3455555 2 2211 111111 1245678899996655553 48999999998
Q ss_pred CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCceEeCCCCCEEEEEcCC
Q 016318 225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 225 ~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~i~~d~~G~lwva~~~~ 300 (391)
..+..+...-..-+-+.++|||.++-|+ +.++.|+.|.++.+... ......-.| ....+..+.|+++.++....
T Consensus 438 ~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 438 QDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 7776665554455788999999988887 66788988887643211 111111112 22345566777777765443
No 121
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.004 Score=53.62 Aligned_cols=102 Identities=22% Similarity=0.341 Sum_probs=67.5
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
|.-.|++.| +.+||.+|...-|..-||++= ....+.-..+|.+....|.+.-- +|.+|.--..
T Consensus 131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------------- 194 (262)
T COG3823 131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------------- 194 (262)
T ss_pred CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence 444677776 567999886666888888752 22223233566666667766432 5666554422
Q ss_pred ccCCCceEEEEeCCCCeEEEecc--C-----------CCCcceEEEccCCCEEEEE
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLR--N-----------LQFPNGLSLSKDKSFFVFC 252 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~--~-----------~~~~ngia~~~d~~~l~v~ 252 (391)
+.++.+.+|++|++....+ + ..-+||||..|+++.+|++
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 2489999999998876542 1 2257999999999878886
No 122
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.25 E-value=0.031 Score=52.86 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=104.9
Q ss_pred CcceEEEccC--CCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 70 GPESMAFDPL--GRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 70 gPe~i~~d~~--G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
.-.++.+.|. +.-+.+++.||.+.-|+.++-+.+. ..+....|...++|+| +|+.+.
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------------~l~gH~~RVs~VafHP-sG~~L~ 277 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------------DLEGHLARVSRVAFHP-SGKFLG 277 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------------hhhcchhhheeeeecC-CCceee
Confidence 3345566654 4448899999987777554222221 2333456777889999 677666
Q ss_pred EECCCCeE-EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 148 ADAYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 148 ~d~~~gl~-~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
...+..-+ .+|..+++ +.+.. +| ......++++.+||.+..|... ...|| .+|..+|.
T Consensus 278 TasfD~tWRlWD~~tk~-ElL~Q--EG-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~R--vWDlRtgr 336 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKS-ELLLQ--EG-HSKGVFSIAFQPDGSLAATGGL---------------DSLGR--VWDLRTGR 336 (459)
T ss_pred ecccccchhhcccccch-hhHhh--cc-cccccceeEecCCCceeeccCc---------------cchhh--eeecccCc
Confidence 55554322 23555442 22211 12 2346789999999999777532 22344 46777777
Q ss_pred EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC---CCCceEeCC-CCCEEEEEc
Q 016318 227 TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG---YPDNVRTNE-KGEFWVAIH 298 (391)
Q Consensus 227 ~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g---~p~~i~~d~-~G~lwva~~ 298 (391)
...+.++ .....+|+++|+|. .+.+-+..+.+.++++... .+ ....|+ ....++.++ .|.+.++..
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r----~~-ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR----SE-LYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred EEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc----cc-ceecccccchhhheEecccCCeEEEEcc
Confidence 6665544 45667999999997 4444455555555555432 12 222333 445678887 454555433
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.22 E-value=0.21 Score=47.71 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=85.8
Q ss_pred EccCCCeeEEEec-C--CEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 76 FDPLGRGPYTGVA-D--GRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 76 ~d~~G~~ly~~~~-~--g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
+.++|+.+.+.+. + .+++.++.. ..+.+.... .....|..+++++..+|....
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----------------------g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----------------------GDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----------------------B-TTT-EE-TTSSEEEEEET
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----------------------CCCccceEEecCCCeEEEEEC
Confidence 4567865544433 3 577777776 344333211 111235566664556644444
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCc--c---cchhheeeecccCCCceEEEEeCCCC
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTN--Y---QRRNFMQLVFSAEDTGRVLKYDPTTK 225 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~--~---~~~~~~~~~~~~~~~g~l~~~d~~~~ 225 (391)
.+.|.++|.+|.+.+.+....++-. .--..+.+.|+..++.....+ + .....+.+.++..+..+|++.|.++|
T Consensus 101 ~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 5679999999988776655433211 011223456777776642211 1 11234667888899999999999999
Q ss_pred eEEEeccCCCCcceEEEccC-CCEEEEEeCC-----CCeEEEEEeccc
Q 016318 226 QTTVLLRNLQFPNGLSLSKD-KSFFVFCEGS-----VGRLHKYWLIGE 267 (391)
Q Consensus 226 ~~~~~~~~~~~~ngia~~~d-~~~l~v~et~-----~~~I~~~~~~g~ 267 (391)
+.+++.+.-.--+-+.++|. ...|-+|--+ ..|||.++.+|.
T Consensus 179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 99998766555566777763 3333343221 358888887764
No 124
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.19 E-value=0.45 Score=50.92 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=103.2
Q ss_pred ceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
.++++.+ +++.+.++..||.|..|+......+.... ...+...++++++.++.++++..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--------------------~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--------------------EHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--------------------CCCCCEEEEEEcCCCCCEEEEEc
Confidence 4566665 36678889999999999876322222111 11244678889863566655544
Q ss_pred CCC-eEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE-
Q 016318 151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT- 227 (391)
Q Consensus 151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~- 227 (391)
..| |..+|..++........ ......+.+. ++|++.++.+. +|.+..||..+.+.
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCcc
Confidence 444 77888876543211111 0124455553 46776666543 57899999876542
Q ss_pred -EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC----ccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 228 -TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA----GNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 228 -~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~----g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
..+.......+.+++. +++.++ +-+..+.|..+++..... .....+.........+.++++|.+.++....+.
T Consensus 654 ~~~~~~h~~~V~~v~f~-~~~~lv-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 654 LCTMIGHSKTVSYVRFV-DSSTLV-SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred ceEecCCCCCEEEEEEe-CCCEEE-EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 2222222344567776 666454 445566777776542111 111222222223456788888886665554444
Q ss_pred h
Q 016318 303 L 303 (391)
Q Consensus 303 ~ 303 (391)
+
T Consensus 732 v 732 (793)
T PLN00181 732 V 732 (793)
T ss_pred E
Confidence 3
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.14 Score=51.39 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=92.9
Q ss_pred eEEEccCCCeeEEEe-cCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCc-cceEEEecCCCcEEEEE
Q 016318 73 SMAFDPLGRGPYTGV-ADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~-~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi~~d~~~g~L~V~d 149 (391)
+-++.|+|+.|-.++ .+=+|+++.++ ..+..... ..+...+ ...+.|..+++.++++.
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~-------------------~~~~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVD-------------------DVPLALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCcceeEEEec-------------------cchhhhccceeeEEEecCceEEEEe
Confidence 446779999665544 56789999876 22222110 0001111 12344444234444443
Q ss_pred -CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 -AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 -~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
....+..++.++...+.+........-...+.|++.++|+...+-++ .|.+++|+.++++.+
T Consensus 448 ~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 448 KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESH 510 (691)
T ss_pred cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceee
Confidence 23447778777766555533222222345678899999975444322 478999999999988
Q ss_pred EeccCCC-CcceEEEcc-CCCEEEEEeCCCCeEEEEEecc
Q 016318 229 VLLRNLQ-FPNGLSLSK-DKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 229 ~~~~~~~-~~ngia~~~-d~~~l~v~et~~~~I~~~~~~g 266 (391)
.+...+. +-...+++| +.+.|.++ +.+++++-|++..
T Consensus 511 ~l~~rln~~vTa~~~~~~~~~~lvva-ts~nQv~efdi~~ 549 (691)
T KOG2048|consen 511 LLKVRLNIDVTAAAFSPFVRNRLVVA-TSNNQVFEFDIEA 549 (691)
T ss_pred cchhccCcceeeeeccccccCcEEEE-ecCCeEEEEecch
Confidence 8764444 334556664 44557776 6788999999843
No 126
>PTZ00420 coronin; Provisional
Probab=97.14 E-value=0.23 Score=50.58 Aligned_cols=162 Identities=10% Similarity=0.012 Sum_probs=91.2
Q ss_pred cCcceEEEccC-CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 69 QGPESMAFDPL-GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 69 ~gPe~i~~d~~-G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
....++++.++ ++.+.+++.||.|..|+.. ......... ...| ...........+++++++..++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~---~p~~----------~L~gH~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK---DPQC----------ILKGHKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc---cceE----------EeecCCCcEEEEEECCCCCeEE
Confidence 34568889886 7888999999999999764 110000000 0000 0111234567889998333344
Q ss_pred EEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC
Q 016318 147 IADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK 225 (391)
Q Consensus 147 V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~ 225 (391)
++.. .+.|..+|..+++...-.. .. ..+..++++++|++.++.+. ++.+..||+.++
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg 199 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQ 199 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCC
Confidence 4333 3448888988775332111 11 24678899999998877643 467889999887
Q ss_pred eEEEeccCCCCc---ce---EEEccCCCEEEEEeCCC---CeEEEEEec
Q 016318 226 QTTVLLRNLQFP---NG---LSLSKDKSFFVFCEGSV---GRLHKYWLI 265 (391)
Q Consensus 226 ~~~~~~~~~~~~---ng---ia~~~d~~~l~v~et~~---~~I~~~~~~ 265 (391)
+...-...-... .. ..++++++++..+...+ +.|..+++.
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 654322221111 11 12357887555543332 246666655
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.092 Score=53.61 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=72.1
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCe-eEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~ 208 (391)
+..+.|.+++ ++-|+=+...+-+-.+.+.... +..+. + ..+...+++.| |.+.+++.+-
T Consensus 370 ~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-H-----ndfVTcVaFnPvDDryFiSGSL------------ 430 (712)
T KOG0283|consen 370 ADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-H-----NDFVTCVAFNPVDDRYFISGSL------------ 430 (712)
T ss_pred hhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-c-----CCeeEEEEecccCCCcEeeccc------------
Confidence 4466777765 4555555444544334433222 22221 1 24788899998 5566666543
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
+|++-.|+....++-.+.+.-.....+++.|||+..+|. +.++.+..|+..|.
T Consensus 431 -----D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 431 -----DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGL 483 (712)
T ss_pred -----ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCC
Confidence 577777887777776655554567889999999977776 77788888877664
No 128
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.08 E-value=0.043 Score=54.23 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=79.1
Q ss_pred CcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-------eEEEecc--------C----
Q 016318 174 VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-------QTTVLLR--------N---- 233 (391)
Q Consensus 174 ~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~~--------~---- 233 (391)
.++..|.++++.+ .|.+|++.+...-. .+-.-..=+.+..|+|++|-+.++ +...+.. .
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 4567899999988 57899997543311 000000001233578999988776 4444431 1
Q ss_pred ------CCCcceEEEccCCCEEEEEeCCCC--------eEEEEEeccccCccceeecccCC--CCCceEeCCCCC-EEEE
Q 016318 234 ------LQFPNGLSLSKDKSFFVFCEGSVG--------RLHKYWLIGEKAGNLEAFAILPG--YPDNVRTNEKGE-FWVA 296 (391)
Q Consensus 234 ------~~~~ngia~~~d~~~l~v~et~~~--------~I~~~~~~g~~~g~~~~~~~~~g--~p~~i~~d~~G~-lwva 296 (391)
+..|.++++++.|+ ||+++.... .++.+...+++.++.+.|..-|. .-.++++++||+ ++|+
T Consensus 493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 23488999999999 888866443 23433334566777777765442 456789999987 9998
Q ss_pred EcCC
Q 016318 297 IHCR 300 (391)
Q Consensus 297 ~~~~ 300 (391)
....
T Consensus 572 vQHP 575 (616)
T COG3211 572 VQHP 575 (616)
T ss_pred ecCC
Confidence 7654
No 129
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.24 Score=45.51 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=82.1
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.-.+++|.+||+.+.+...|+.|..|+.+.+..-.+ -|- ...-..+.|.-++|.++-..+.|+-
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~---------R~nve~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-------RCI---------RQNVEYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-------hHh---------hccccCCCceEEEECCCcceEEEEE
Confidence 456899999999888888999888887652211000 010 0111245788899988444455544
Q ss_pred CC-CCeEEE--eCCC-CeeEEceeccCCCcc---cC--CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 150 AY-FGLMKV--GPEG-GLATSLATEAEGVPL---RF--TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 150 ~~-~gl~~~--d~~~-g~~~~~~~~~~~~~~---~~--~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
.. +.|+++ +.++ |.........+...+ .. .-++-+. ++..|+.+.+ -+..++.|
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw 214 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLW 214 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEE
Confidence 32 225444 3221 221111111111000 01 1112222 4455555433 13468888
Q ss_pred eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
+.++.-+..+........-.+++|+|+|+.++. ...-+.++.
T Consensus 215 ~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE 256 (420)
T KOG2096|consen 215 DLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWE 256 (420)
T ss_pred ecCCceeeeeccccccccceeeCCCCcEEEEec-CCCCceEEE
Confidence 887443444433333344568999999887774 344444443
No 130
>PTZ00421 coronin; Provisional
Probab=97.06 E-value=0.14 Score=51.49 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=90.2
Q ss_pred CcceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 70 GPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
...++++.+++ +++.+++.|+.|..||........... .......++++++ +++++++
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~--------------------~h~~~V~sla~sp-dG~lLat 185 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK--------------------CHSDQITSLEWNL-DGSLLCT 185 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc--------------------CCCCceEEEEEEC-CCCEEEE
Confidence 34578898875 678889999999999876222211110 0123456889998 6776665
Q ss_pred ECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
....+ |..+|+.+++...-.....+. ....+...+++...++...+ ...++.+..||..+.+.
T Consensus 186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred ecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCC
Confidence 55544 888898877532211111111 12234445555555553210 11246788888764331
Q ss_pred --EEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 228 --TVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 228 --~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.... +......-..+++|++.++++....+.|..|++..
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 1111 11112223467899998887754567788887764
No 131
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.06 E-value=0.18 Score=51.20 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=64.0
Q ss_pred cCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE---------EEe---ccCCCCcceEEEc
Q 016318 177 RFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT---------TVL---LRNLQFPNGLSLS 243 (391)
Q Consensus 177 ~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---------~~~---~~~~~~~ngia~~ 243 (391)
+.|.+++++|||. +|++.-. ++.+-.+|.++.+. .++ .+-...|-..+++
T Consensus 321 KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC
Confidence 5799999999996 5555421 35666676654321 011 1223478889999
Q ss_pred cCCCEEEEEeCCCCeEEEEEeccc---cCcc--ceeecccC--CCCCce------EeCCCCCEEEEEcC
Q 016318 244 KDKSFFVFCEGSVGRLHKYWLIGE---KAGN--LEAFAILP--GYPDNV------RTNEKGEFWVAIHC 299 (391)
Q Consensus 244 ~d~~~l~v~et~~~~I~~~~~~g~---~~g~--~~~~~~~~--g~p~~i------~~d~~G~lwva~~~ 299 (391)
++|+ .|.+---...|.+++++.. ..|. ..+...++ -.|.-+ ..+++|.++++++.
T Consensus 384 g~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 384 GRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9998 8888767789999987642 0111 11222111 123333 44899998888765
No 132
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.05 E-value=0.38 Score=47.49 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=73.2
Q ss_pred EEecCCCc---EEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecc
Q 016318 137 RFDKKTGD---LYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 137 ~~d~~~g~---L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~ 210 (391)
++++++.. +|+.... ..|+.++.++|+.+.+.. ..+. ....+..||| .|.++....
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wSPDG~~Laf~s~~~------------- 252 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFSPRKKLLAFISDRY------------- 252 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEECCCCCEEEEEECCC-------------
Confidence 67774333 2454433 239999999988776643 2221 1235788999 566554221
Q ss_pred cCCCceEEEEeCCC---CeEEEeccC-CCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeecccCCCCCc
Q 016318 211 AEDTGRVLKYDPTT---KQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAILPGYPDN 284 (391)
Q Consensus 211 ~~~~g~l~~~d~~~---~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~~g~p~~ 284 (391)
+..+..+..++.++ ++.+.+... .......+++|||+.|+++... ..+|+++++++.. +..+.+....+....
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSC 331 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccc
Confidence 01111222245433 344444432 2233457899999977766432 3478888775321 222223222233345
Q ss_pred eEeCCCCCE
Q 016318 285 VRTNEKGEF 293 (391)
Q Consensus 285 i~~d~~G~l 293 (391)
...+++|+.
T Consensus 332 p~wSPDG~~ 340 (428)
T PRK01029 332 PAWSPDGKK 340 (428)
T ss_pred eeECCCCCE
Confidence 678888883
No 133
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.05 E-value=0.14 Score=44.67 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=71.0
Q ss_pred CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
+....++++|++.++.|.... ..+..+|.++..+..+.. ...|.|..+|+|++.+....
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~-------~~~n~i~wsP~G~~l~~~g~------------ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT-------QPRNTISWSPDGRFLVLAGF------------ 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC-------CCceEEEECCCCCEEEEEEc------------
Confidence 346788999954555555332 347777877544443321 24578999999987766421
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCC-----CCeEEEEEecc
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGS-----VGRLHKYWLIG 266 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~-----~~~I~~~~~~g 266 (391)
+.-.|.|..||.++.+.....+ ......++++|||+++..+.+. .+.+..++..|
T Consensus 121 --~n~~G~l~~wd~~~~~~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 121 --GNLNGDLEFWDVRKKKKISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred --cCCCcEEEEEECCCCEEeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 1224778899988655433222 2346789999999988877653 23444444445
No 134
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.04 E-value=0.044 Score=51.97 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=83.1
Q ss_pred CccceEEEecCCCcEEEEECCCC------eEEEeCCC-----CeeEEce----eccCCCcc----cCCcceeecCCCCEE
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG------LMKVGPEG-----GLATSLA----TEAEGVPL----RFTNDLDIDDEGNVY 191 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g------l~~~d~~~-----g~~~~~~----~~~~~~~~----~~~~~l~~d~~G~ly 191 (391)
|--.||.++++++++|+..-... ++.++... +.++... ...+|.++ .-+.+|++.++|.+|
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 33468899854666665543333 55554432 1122111 11123322 256689998899999
Q ss_pred EEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe--ccCC---------C----CcceEEEccCCCEEEEEeCCC
Q 016318 192 FTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL--LRNL---------Q----FPNGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 192 ~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~---------~----~~ngia~~~d~~~l~v~et~~ 256 (391)
+++.... ......+|++|+.+....+.+ ...+ . ..-++++++||+.||++....
T Consensus 100 is~E~~~-----------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 100 ISSEGGR-----------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEeCCcc-----------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 9986520 001125789999873332332 1111 1 123899999999777763322
Q ss_pred ---------------CeEEEEEeccccCccceeecccC--------CCCCceEeCCCCCEEEEEcC
Q 016318 257 ---------------GRLHKYWLIGEKAGNLEAFAILP--------GYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 257 ---------------~~I~~~~~~g~~~g~~~~~~~~~--------g~p~~i~~d~~G~lwva~~~ 299 (391)
.||++|+.+.+.....+....+. ..+..|..-++|+++|-...
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 36777775532111112111221 12344666678888886544
No 135
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.034 Score=53.47 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=32.2
Q ss_pred eEEEEeCCCC-e--EEEecc--CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEec
Q 016318 216 RVLKYDPTTK-Q--TTVLLR--NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI 265 (391)
Q Consensus 216 ~l~~~d~~~~-~--~~~~~~--~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~ 265 (391)
.+.+.+++.+ + .+.... ....|.+|++.+||. |++++.. +++|||+..+
T Consensus 343 ~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGa-llv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 343 PVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGA-LLVLTDQGDGRILRVSYA 397 (399)
T ss_pred eEEEeccCCCcceEEEEEEecCCCCcccceEECCCCe-EEEeecCCCCeEEEecCC
Confidence 4666666554 1 111121 225889999999998 7777766 5699998643
No 136
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.98 E-value=0.25 Score=44.23 Aligned_cols=73 Identities=19% Similarity=0.113 Sum_probs=49.3
Q ss_pred EEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC
Q 016318 75 AFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG 153 (391)
Q Consensus 75 ~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g 153 (391)
..|.++.++|.+++|+..+.+|+. .--.+. ..|.+. --.+-++++.++.||++.....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVyk-------skcgG~--------------~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK-------SKCGGG--------------TFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEe-------cccCCc--------------eeccceecCCCceEEEEeccce
Confidence 467788899999999999999987 222221 123321 1112245544688999988777
Q ss_pred eEEEeCCCCeeEEce
Q 016318 154 LMKVGPEGGLATSLA 168 (391)
Q Consensus 154 l~~~d~~~g~~~~~~ 168 (391)
++++++++...+.+.
T Consensus 159 vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 159 VLAVTKNPYSSTEFW 173 (354)
T ss_pred EEEEccCCCCcceeh
Confidence 999999887666654
No 137
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.97 E-value=0.11 Score=50.67 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=110.5
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCcc---ceEEEec
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP---LGLRFDK 140 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P---~gi~~d~ 140 (391)
-+-+.-.++.+.+.|+.|.+-+.......+|.+ .+.++.+.... +. .+.++.|.. .+-+++|
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY---I~----------Dm~nTKGHia~lt~g~whP 278 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY---IR----------DMYNTKGHIAELTCGCWHP 278 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh---hh----------hhhccCCceeeeecccccc
Confidence 334555677888888867766666666666666 44444322110 00 111112221 2225566
Q ss_pred CCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318 141 KTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV 217 (391)
Q Consensus 141 ~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l 217 (391)
+..+.++..++.| ||-++....+.+++.....+..-..+...+.+++|+++.+. ..+|.|
T Consensus 279 ~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSI 341 (641)
T KOG0772|consen 279 DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSI 341 (641)
T ss_pred CcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCce
Confidence 5556666666665 44444333445555444444333456667889999884443 236788
Q ss_pred EEEeCCCCeEEEe--c----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CC-CceEeCC
Q 016318 218 LKYDPTTKQTTVL--L----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YP-DNVRTNE 289 (391)
Q Consensus 218 ~~~d~~~~~~~~~--~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p-~~i~~d~ 289 (391)
..|+..+...... . ........|+|++||+. +.+-...+.+..+++...+ .-..++.+++. +| .+.++++
T Consensus 342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred eeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCC
Confidence 8887533222221 1 22335678999999994 4554555666666665432 22334444443 33 4678899
Q ss_pred CCCEEEEEc
Q 016318 290 KGEFWVAIH 298 (391)
Q Consensus 290 ~G~lwva~~ 298 (391)
+..+.++..
T Consensus 420 d~kli~TGt 428 (641)
T KOG0772|consen 420 DDKLILTGT 428 (641)
T ss_pred CceEEEecc
Confidence 988777643
No 138
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.96 E-value=0.039 Score=57.79 Aligned_cols=197 Identities=18% Similarity=0.188 Sum_probs=104.7
Q ss_pred eEEEccCCCeeEEEe--cCCEEEEEeCCcee-EEEeecCC-CcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 73 SMAFDPLGRGPYTGV--ADGRILFWDGLKWT-DFAFTSNN-RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~--~~g~I~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
+|.+.++|..+-+|. .|++++.|+.+.+. .......+ ....|. +....+...+++|++++..|+.|
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~----------m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCT----------MDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhee----------eccccCceeEEEECCCCCeEeec
Confidence 677888888666666 66777777554111 00000000 011332 22235667788999844456666
Q ss_pred ECCCCeEEEeCCC-CeeEEcee--------------ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318 149 DAYFGLMKVGPEG-GLATSLAT--------------EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 149 d~~~gl~~~d~~~-g~~~~~~~--------------~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
...+-|+.....+ +.-..+.. ...+ .-.-.-+++-++++.+.++-+-
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~----------------- 149 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSL----------------- 149 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecc-----------------
Confidence 4443333333321 11011110 0011 1123455667888888777643
Q ss_pred CceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc---cCccceeecccCCCC--CceEe
Q 016318 214 TGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE---KAGNLEAFAILPGYP--DNVRT 287 (391)
Q Consensus 214 ~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~---~~g~~~~~~~~~g~p--~~i~~ 287 (391)
++.|+.||..+-+. +++......+-|+.+||-|++ +|.....|..++|...+ .+.-.+.|.+.++.+ .-+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCccCe--eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence 57899999877644 344455568889999999994 44455566666654322 111123333333332 33556
Q ss_pred CCCCCEEEEEcC
Q 016318 288 NEKGEFWVAIHC 299 (391)
Q Consensus 288 d~~G~lwva~~~ 299 (391)
+|||.+.++.+.
T Consensus 228 SPDG~~las~nA 239 (942)
T KOG0973|consen 228 SPDGHHLASPNA 239 (942)
T ss_pred CCCcCeecchhh
Confidence 789988776544
No 139
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.95 E-value=0.0013 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.803 Sum_probs=18.5
Q ss_pred ccCCcceeecCCCCEEEEeCC
Q 016318 176 LRFTNDLDIDDEGNVYFTDSS 196 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td~~ 196 (391)
+..|.+++++++|+||++|+.
T Consensus 1 f~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECC
T ss_pred CcCCcEEEEeCCCCEEEEECC
Confidence 357999999999999999965
No 140
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.93 E-value=0.3 Score=44.36 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=104.1
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
+..+-.|+. |.|++.|.....||-++-.....+. ...+...++.+.+.+++.||...-.
T Consensus 150 cC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~--------------------GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 150 CCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFH--------------------GHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred EEEEcCCCc-eEecCCCceEEEEEcccceEEEEec--------------------CCcccEEEEecCCCCCCeEEecccc
Confidence 333434777 9999999999999877222221111 1246678888888678899875433
Q ss_pred -CeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eEEE
Q 016318 153 -GLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QTTV 229 (391)
Q Consensus 153 -gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~ 229 (391)
-....|...+... .+... -.-.|.+.+-|+|.-+.+.+- ++..-.||.... ++.+
T Consensus 209 ~~aklWD~R~~~c~qtF~gh-----esDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTFEGH-----ESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAV 266 (343)
T ss_pred cceeeeeccCcceeEeeccc-----ccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEee
Confidence 3556666655433 23211 134788999999988887643 455556776543 4444
Q ss_pred eccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEE-eccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318 230 LLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV 295 (391)
Q Consensus 230 ~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv 295 (391)
+... ....++++|+..|+.|+.. -....+..++ +++... .++....+-...+.+.+||.-..
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWDtlk~e~v---g~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWDTLKGERV---GVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred eccCcccCCceeEEEcccccEEEee-ecCCceeEeeccccceE---EEeeccCCeeEEEEECCCCcEEE
Confidence 4322 2456899999999955543 4455666665 333221 11221122345677888886443
No 141
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.90 E-value=0.047 Score=48.36 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=80.1
Q ss_pred CcEEEEECC-CCeEEEeCCCCeeEE-ceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 143 GDLYIADAY-FGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 143 g~L~V~d~~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
++-++..++ +.+...|..+++... +.. ...++.+.+.++|++..+..+ +.|..+
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~Fw 210 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVKFW 210 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeEEe
Confidence 344444344 558888888775332 211 135678889999987766543 467788
Q ss_pred eCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee-cccCCCCCceEeCCCCCEEEEEcC
Q 016318 221 DPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 221 d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~-~~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
|+++=....-.+-....+...++|+.. +||+......+++|+.... ...+.+ ...+|-.-.++++++|.+|..-..
T Consensus 211 daksf~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 211 DAKSFGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ccccccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccCC
Confidence 876433222112122334556889886 8898777788999986532 112223 123343456889999999877555
Q ss_pred CCc
Q 016318 300 RRS 302 (391)
Q Consensus 300 ~~~ 302 (391)
..+
T Consensus 288 DGT 290 (334)
T KOG0278|consen 288 DGT 290 (334)
T ss_pred Cce
Confidence 444
No 142
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.87 E-value=0.037 Score=51.00 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318 187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 187 ~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~e 253 (391)
+|++|+.|++ +|.+.++|+++|+.+.+..-..+|.|+++. |++++|+-
T Consensus 212 dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 7899999987 689999999999999988777899999997 88777763
No 143
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.74 E-value=0.0056 Score=38.72 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=33.5
Q ss_pred eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
+..++..|+|+++++.++.+|++++....|.+.+++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34567899999999999999999999999999998873
No 144
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.2 Score=47.59 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=94.0
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
+|-.+.-.-|.++||.+.+.++..+--+..||.+.-..+...+.+ ....+...++-+++-+
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-------------------~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-------------------LGFSVSSCAWCPDGFR 326 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-------------------cCCCcceeEEccCCce
Confidence 444455566777777776666666655666665411111111000 1223444556664445
Q ss_pred EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
+.++....+++..|.+++..... ++.......++++.+||. ++..+. +..+..|+.+
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e 384 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNRE 384 (519)
T ss_pred eEecCCCCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec------------------ccceeeechh
Confidence 55665567799999987653322 233334578999999996 444432 2456667665
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
+..-+-+...-+....++++.|++++++. -..+.|..++++.
T Consensus 385 ~~~dr~lise~~~its~~iS~d~k~~Lvn-L~~qei~LWDl~e 426 (519)
T KOG0293|consen 385 ARVDRGLISEEQPITSFSISKDGKLALVN-LQDQEIHLWDLEE 426 (519)
T ss_pred hhhhhccccccCceeEEEEcCCCcEEEEE-cccCeeEEeecch
Confidence 54433344444456678999999966665 6677888888774
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.096 Score=54.20 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=104.0
Q ss_pred CCCeeEEEecCCEEEEEeCCc--ee-EEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEEC-CCC
Q 016318 79 LGRGPYTGVADGRILFWDGLK--WT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIADA-YFG 153 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d~-~~g 153 (391)
+++.+.+++.++.|.++.-+. .. .++. .--| ..++++. +|++.++.. ..+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~R------------------------ftlp~r~~~v~g-~g~~iaagsdD~~ 119 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILAR------------------------FTLPIRDLAVSG-SGKMIAAGSDDTA 119 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeee------------------------eeccceEEEEec-CCcEEEeecCcee
Confidence 344578888888888885441 11 1111 1112 3567876 666655543 356
Q ss_pred eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC
Q 016318 154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN 233 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~ 233 (391)
|-.++..+...+......++ ..-.+..+++|++..+.+. +|.|..||..++.......+
T Consensus 120 vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred EEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhccc
Confidence 77777766554444444443 2567889999998877654 68999999988876554433
Q ss_pred CC---------CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec---cc-CCCCCceEeCCCCCEEEEEcCC
Q 016318 234 LQ---------FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA---IL-PGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 234 ~~---------~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~---~~-~g~p~~i~~d~~G~lwva~~~~ 300 (391)
+. .-+-++++|++..+.+. ...+.|..|..+|-. ..|. +. ...-..+..++.|.+..|..-.
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we----~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWE----LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCce----eheeecccccccceEEEEEcCCCcEEeeeccC
Confidence 22 12346899996556555 446789999876531 1111 11 0112346678888766665544
Q ss_pred Cchhh
Q 016318 301 RSLYS 305 (391)
Q Consensus 301 ~~~~~ 305 (391)
..+.+
T Consensus 254 g~I~v 258 (933)
T KOG1274|consen 254 GQILV 258 (933)
T ss_pred CcEEE
Confidence 44444
No 146
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.64 E-value=0.54 Score=43.18 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=103.4
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC--CcEEEEE
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT--GDLYIAD 149 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~--g~L~V~d 149 (391)
.++|+ +|..+.+|+.|-+|..||..+-..... .....++...+.|++.- ..|+-|.
T Consensus 47 tavAV--s~~~~aSGssDetI~IYDm~k~~qlg~--------------------ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 47 TALAV--SGPYVASGSSDETIHIYDMRKRKQLGI--------------------LLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred eEEEe--cceeEeccCCCCcEEEEeccchhhhcc--------------------eeccccceEEEEecCCcchhheeeec
Confidence 36666 466566778889999998762222211 11124556667776521 2555554
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV 229 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 229 (391)
....|..++.. ..+.+.+ ..+.. ...+++++.|.|.|-++..+ ++.+-.+|.-+|+.-.
T Consensus 105 dDG~i~iw~~~--~W~~~~s-lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 105 DDGHIIIWRVG--SWELLKS-LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAF 163 (362)
T ss_pred CCCcEEEEEcC--CeEEeee-ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccce
Confidence 33346655543 3333322 11111 23899999999999888744 4556667776666544
Q ss_pred eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cCCCCCceEeCCCCCEEEEEcC
Q 016318 230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~g~p~~i~~d~~G~lwva~~~ 299 (391)
...--..+.-|.++|.|...++.- +++|-.|.++. ..+|.. .|--+-++.+...+.+.+|...
T Consensus 164 v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~-----A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 164 VLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDN-----ASVFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred eeccCCcceeeEEcCCCCEEEEEe--ccEEEEEeccc-----HhHhhhhhccccceeeeecCCceEEEecCC
Confidence 433335666799999999666653 56777776543 233332 2323445666666667777544
No 147
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.095 Score=48.03 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=87.7
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--cee-EEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWT-DFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~ 142 (391)
|+-..+|+-.|+|||+.+.+++-||-|-.|+-- +.+ .+..... . .........++|.|+. +
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq-------------d--~fMMmd~aVlci~FSR-D 274 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-------------D--NFMMMDDAVLCISFSR-D 274 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh-------------c--ceeecccceEEEeecc-c
Confidence 556789999999999999999999988887542 111 0000000 0 0111134467888887 5
Q ss_pred CcEEEEECCCC-eEEEeCCCCee-EEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 143 GDLYIADAYFG-LMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 143 g~L~V~d~~~g-l~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
.++....+..| |-.+...+|.. +.+.. ........+.+.+|+.-..+.+- ....|.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRi 332 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASF------------------DQTVRI 332 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhh----hhccCeeEEEEccCcchhhcccc------------------cceEEE
Confidence 55655544444 33333344432 22211 11224556667777643333321 122332
Q ss_pred e-CCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 221 D-PTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 221 d-~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
. .++|+. +.+...-.+.|...+++||..++-+ +..+.|..++.+
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~K 378 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGK 378 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEe-cCCccEEEecCc
Confidence 2 233432 3333445688889999999976655 556677666544
No 148
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.62 E-value=0.92 Score=45.61 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=26.3
Q ss_pred cceEEEEECC-CCCEEEEEeCCCCCeeeceeEEEEECCEEEEecCCC
Q 016318 337 LHAMAVKYSP-EGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLM 382 (391)
Q Consensus 337 ~~~~v~~~d~-~g~~~~~~~~~~g~~~~~is~~~~~~g~Lylgs~~~ 382 (391)
..+.+.++|. +|+++..++-..+..... .+...+|++|+++...
T Consensus 414 ~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~g~~yv~~~~g 458 (488)
T cd00216 414 ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVNGKQYVGVMVG 458 (488)
T ss_pred CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeCCEEEEEEEec
Confidence 4466777774 677777765433222111 2235689999987654
No 149
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.61 E-value=0.082 Score=50.90 Aligned_cols=146 Identities=13% Similarity=0.203 Sum_probs=90.8
Q ss_pred eccccccCcceEEEcc-CCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCc-cceE
Q 016318 63 KFLNQIQGPESMAFDP-LGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGL 136 (391)
Q Consensus 63 ~~~~~~~gPe~i~~d~-~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi 136 (391)
.+.|--.|-.++.+-+ .|.++..+..|+.|..|+-- -+++|.. ... ...+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g------------------------H~k~Vrd~ 264 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG------------------------HRKPVRDA 264 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc------------------------chhhhhhh
Confidence 4445455666666666 78877888889988888532 1222210 112 2355
Q ss_pred EEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCC
Q 016318 137 RFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.. .|.=+.+.++ .-|-.+|.+||+...-... -..|..+-+.+++ +++++..+ +
T Consensus 265 ~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s-----------------d 321 (503)
T KOG0282|consen 265 SFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS-----------------D 321 (503)
T ss_pred hccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC-----------------C
Confidence 6665 4444444344 4477789999976543221 1357778888887 88888755 6
Q ss_pred ceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCC
Q 016318 215 GRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 215 g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~ 256 (391)
++|..||..++++.. +...+...+.|.+-++|+. +++.+..
T Consensus 322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r-FissSDd 363 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR-FISSSDD 363 (503)
T ss_pred CcEEEEeccchHHHHHHHhhhhheeeeEEccCCce-EeeeccC
Confidence 899999998887432 2355667788888888774 3443333
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.59 E-value=0.079 Score=50.43 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=92.1
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
=.+.++.|||.++-+|+.||.+-.||.+.-...+.++. ..+-...|.|+. +|.-.+..+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--------------------ht~~vk~i~FsE-NGY~Lat~a 408 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--------------------HTGPVKAISFSE-NGYWLATAA 408 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--------------------CCCceeEEEecc-CceEEEEEe
Confidence 45788999999777889999887887763223333221 134456889985 554333334
Q ss_pred CCC-eEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 151 YFG-LMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 151 ~~g-l~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
..+ +..+|...- .++.+.. + .....+.+.+|..|...+...+ +-+|+.++..+++.+
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l--~--~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQL--D--EKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWT 467 (506)
T ss_pred cCCeEEEEEehhhcccceeec--c--ccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccce
Confidence 455 888887532 1222211 1 1235788999999976665532 347888887777665
Q ss_pred Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318 229 VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 262 (391)
Q Consensus 229 ~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~ 262 (391)
... +.....+|+.|...-+ |++.+...++.++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq--~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQ--YLASTSMDAILRL 502 (506)
T ss_pred eeehhhhcccccceeeecccce--EEeeccchhheEE
Confidence 442 3334678899876664 5565667777665
No 151
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.56 E-value=0.11 Score=52.68 Aligned_cols=201 Identities=15% Similarity=0.105 Sum_probs=113.0
Q ss_pred cceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeE-EEeecCCCcccCCCCCCccccccccCccCccceEEE
Q 016318 60 SEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTD-FAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRF 138 (391)
Q Consensus 60 ~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~ 138 (391)
.+.++.| || ++++++|+.+|+...+ +|..++-..... +....+ .| ..+...+++
T Consensus 16 ~epiYtG---G~--~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~----ed---------------~d~ita~~l 70 (775)
T KOG0319|consen 16 LEPIYTG---GP--VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSN----ED---------------EDEITALAL 70 (775)
T ss_pred ccceecC---Cc--eeECCCCCEEEEecCc-eEEEEEccCCceecccCCc----cc---------------hhhhheeee
Confidence 3444444 55 9999999988877655 577666541111 111111 11 123456778
Q ss_pred ecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318 139 DKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL 218 (391)
Q Consensus 139 d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~ 218 (391)
++++..|+.+....-+-.++.+++++.......... ...-+++++.|.+..+. ..+|++.
T Consensus 71 ~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~---Pvi~ma~~~~g~LlAtg-----------------gaD~~v~ 130 (775)
T KOG0319|consen 71 TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEA---PVITMAFDPTGTLLATG-----------------GADGRVK 130 (775)
T ss_pred cCCccEEEEeeccceEEEEEcccchHhHhHhhccCC---CeEEEEEcCCCceEEec-----------------cccceEE
Confidence 874444565543333566677777544333221111 24568899998765554 2368899
Q ss_pred EEeCCCCeEEEeccCCC-CcceEEEccCCCE-EEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318 219 KYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSF-FVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA 296 (391)
Q Consensus 219 ~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~-l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva 296 (391)
.+|.+.+.......+.. ....+.++|+.+. ++++-...+.+..|++..... .............++.+.+++.-.++
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeeccCCceEEE
Confidence 99998888877766644 4567888888654 444445567788887653211 11111111123456777777775555
Q ss_pred EcCCCchhhh
Q 016318 297 IHCRRSLYSH 306 (391)
Q Consensus 297 ~~~~~~~~~~ 306 (391)
........+|
T Consensus 210 ~~RDkvi~vw 219 (775)
T KOG0319|consen 210 VGRDKVIIVW 219 (775)
T ss_pred eccCcEEEEe
Confidence 4444443333
No 152
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.56 E-value=0.091 Score=50.65 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=71.3
Q ss_pred cCccCccceEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhe
Q 016318 127 EHICGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFM 205 (391)
Q Consensus 127 ~~~~g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~ 205 (391)
+...|+...+.+++ +|. +.|++....|+.+|.++|.++.+.....+ ...+++..++++ |++=+ ++
T Consensus 398 e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~nsr-~iAYa---fP----- 463 (668)
T COG4946 398 EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHPNSR-WIAYA---FP----- 463 (668)
T ss_pred eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcCCce-eEEEe---cC-----
Confidence 34467788888988 555 77777667799999999988876543332 356667777765 33321 00
Q ss_pred eeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEe
Q 016318 206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~e 253 (391)
++.-+-.+-.||..+++.--+...-..-..-|++||+++||+-.
T Consensus 464 ----~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 464 ----EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ----cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 11112346678888777655554444444568999999999874
No 153
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.46 E-value=0.79 Score=42.95 Aligned_cols=146 Identities=18% Similarity=0.264 Sum_probs=88.8
Q ss_pred ceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318 134 LGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
..|+..+ +|..|+..+. ..|...|++++....+...- +....-+...|||...|+.+-
T Consensus 199 tsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~slLkwSPdgd~lfaAt~--------------- 258 (445)
T KOG2139|consen 199 TSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGFSLLKWSPDGDVLFAATC--------------- 258 (445)
T ss_pred eEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccC----CCceeeEEEcCCCCEEEEecc---------------
Confidence 4677877 6777766554 24889999988766553111 123345677999988887632
Q ss_pred CCCceEEE-EeCC-CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccC------c--cceeecccC--
Q 016318 212 EDTGRVLK-YDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA------G--NLEAFAILP-- 279 (391)
Q Consensus 212 ~~~g~l~~-~d~~-~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~------g--~~~~~~~~~-- 279 (391)
+ ++++ ++.. +...+...-+-....+-+++|+|++|+++-....+|++....+... + .....++++
T Consensus 259 --d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 259 --D-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred --c-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 2 3333 3221 1111222222235567789999999999988888999998775311 1 111122321
Q ss_pred ----------CCCCceEeCCCCCEEEEEcCCCc
Q 016318 280 ----------GYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 280 ----------g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
|.+..|+.|+.|+..+....+..
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 34667999999997777666543
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.43 E-value=0.059 Score=55.18 Aligned_cols=150 Identities=19% Similarity=0.113 Sum_probs=95.8
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~ 151 (391)
.+++.|.-++.+.++..+|-+..|+-++-...... .....+.++..+...+-+-++...
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l---------------------~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL---------------------RLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeee---------------------ccCCCcceeeeeehhhhhhhhcCc
Confidence 47889988888888888887777765522211111 012224456665534444445445
Q ss_pred CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
..|..+|..|.++. +.+.|. ....+++++.+||+-.++.+. ++.|..||..++...-..
T Consensus 556 f~I~vvD~~t~kvv---R~f~gh-~nritd~~FS~DgrWlisasm-----------------D~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVV---REFWGH-GNRITDMTFSPDGRWLISASM-----------------DSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeEEEEEchhhhhh---HHhhcc-ccceeeeEeCCCCcEEEEeec-----------------CCcEEEEeccCcceeeeE
Confidence 67999998875433 222221 246899999999986665543 578999998877653322
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
.--..+..+.++|.|++|..+-...+.|+.+.
T Consensus 615 ~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 615 LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 22235568999999998887766667777764
No 155
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.13 Score=48.61 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=103.9
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEe-CCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWD-GLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
-.+++..+|..+-++..||.+..|+ |+. .+.. ....+.+....|.|++ ++.+.+.-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l--------------------~e~~~~~eV~DL~FS~-dgk~lasig 205 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTIL--------------------EEIAHHAEVKDLDFSP-DGKFLASIG 205 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhh--------------------hhHhhcCccccceeCC-CCcEEEEec
Confidence 5778889988888999999888887 541 1110 1111245567889998 787777655
Q ss_pred CCCeEEEeCCCCe-eEEceeccCCC-cccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC--CC
Q 016318 151 YFGLMKVGPEGGL-ATSLATEAEGV-PLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT--TK 225 (391)
Q Consensus 151 ~~gl~~~d~~~g~-~~~~~~~~~~~-~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~ 225 (391)
.....+++.++|. +... ++.+.. .+...+- ..|+ ...+++.+.. .+.+++..++.. .+
T Consensus 206 ~d~~~VW~~~~g~~~a~~-t~~~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 206 ADSARVWSVNTGAALARK-TPFSKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSG 268 (398)
T ss_pred CCceEEEEeccCchhhhc-CCcccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeecc
Confidence 5567777777662 1111 111111 1112221 2222 2367776632 234555544432 12
Q ss_pred ----eEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318 226 ----QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 226 ----~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~ 299 (391)
+.+...........++++.||+++-+. |..+.|..|.... ......+.. ..+...++.+.|+-+..+....
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 333334445567789999999988777 6678888886432 111222221 1245667777777665555433
No 156
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.78 Score=41.82 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=95.9
Q ss_pred eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE--e
Q 016318 154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV--L 230 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~ 230 (391)
-+.||+++++.-.......+. . +--.=++.+||. +|.|+...+ ...|-|-.||...+-.++ +
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~R-H-fyGHGvfs~dG~~LYATEndfd-------------~~rGViGvYd~r~~fqrvgE~ 157 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGR-H-FYGHGVFSPDGRLLYATENDFD-------------PNRGVIGVYDAREGFQRVGEF 157 (366)
T ss_pred EEEECCCCCcCcEEEecccCc-e-eecccccCCCCcEEEeecCCCC-------------CCCceEEEEecccccceeccc
Confidence 667888876533332222221 1 222336788996 666653211 123456678765332222 1
Q ss_pred ccCCCCcceEEEccCCCEEEEEeCCCCeEEEE--------Eeccc---------cCccceeecccC-----CCCCceEeC
Q 016318 231 LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY--------WLIGE---------KAGNLEAFAILP-----GYPDNVRTN 288 (391)
Q Consensus 231 ~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~--------~~~g~---------~~g~~~~~~~~~-----g~p~~i~~d 288 (391)
..-.-.|.-+.+.+||+.+.+++ +.|... +++.- ..|+.-.-..+| -....+.++
T Consensus 158 ~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 158 STHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred ccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 12223678899999999887774 333333 11110 001100000122 123457889
Q ss_pred CCCCEEEEEcCCCc--hhhhhhhcCccceeeeeecCcccee-------eeEEeecCccceEEEEECCCCCEEEEEeCCCC
Q 016318 289 EKGEFWVAIHCRRS--LYSHLMALYPKIRHFLLKLPISAKT-------HYLIHVGGRLHAMAVKYSPEGKILQVLEDSKG 359 (391)
Q Consensus 289 ~~G~lwva~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g 359 (391)
.+|++|.+...... ..-..+..+ .-++.+.-++.+.+. ..++.+. ...+.|..-+|.|+...++...+|
T Consensus 235 ~dgtvwfgcQy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 235 RDGTVWFGCQYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred CCCcEEEEEEeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcCCC
Confidence 99999999764222 111111111 123334444444321 1222222 334667777899999988888888
Q ss_pred Ceeec
Q 016318 360 KVVKA 364 (391)
Q Consensus 360 ~~~~~ 364 (391)
.+...
T Consensus 313 ~vv~~ 317 (366)
T COG3490 313 AVVSE 317 (366)
T ss_pred cEEec
Confidence 76554
No 157
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.34 E-value=0.59 Score=44.85 Aligned_cols=138 Identities=22% Similarity=0.345 Sum_probs=72.8
Q ss_pred CCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC----CCC---EEEEeCCCcccchhheeeecccCC
Q 016318 142 TGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD----EGN---VYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~----~G~---ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
...|++++.. .||+.+|.++.++..+. .| .+|.+++-. .|. |-+++... ++..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~---~G----r~NNVDvrygf~l~g~~vDlavas~R~------------~g~n 127 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP---VG----RPNNVDVRYGFPLNGKTVDLAVASDRS------------DGRN 127 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE----SS-----EEEEEEEEEEEETTEEEEEEEEEE-C------------CCT-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec---CC----CcceeeeecceecCCceEEEEEEecCc------------CCCC
Confidence 4456666554 57999999988776652 12 345554421 222 22222100 0011
Q ss_pred CceEEEEeCCCCeEEEec-------cCCCCcceEEEcc---CCCE-EEEEeCCCCeEEEEEeccccCcc--ceeec--cc
Q 016318 214 TGRVLKYDPTTKQTTVLL-------RNLQFPNGLSLSK---DKSF-FVFCEGSVGRLHKYWLIGEKAGN--LEAFA--IL 278 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~-------~~~~~~ngia~~~---d~~~-l~v~et~~~~I~~~~~~g~~~g~--~~~~~--~~ 278 (391)
.=++|++|+.++.++.+. ..+..+.|+|+.. +|++ .++. ...+++..|.+.....+. .+... .+
T Consensus 128 ~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~-~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 128 SLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVN-GKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE-ETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred eEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEe-cCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 125888999888776653 2344578999853 3553 3344 445778888776433332 12222 24
Q ss_pred CCCCCceEeCC-CCCEEEEEcC
Q 016318 279 PGYPDNVRTNE-KGEFWVAIHC 299 (391)
Q Consensus 279 ~g~p~~i~~d~-~G~lwva~~~ 299 (391)
++.+.++.+|. .|.+|++.-.
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEEecccCCEEEecCc
Confidence 56788888875 5679998654
No 158
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.32 E-value=0.71 Score=43.45 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=68.0
Q ss_pred CCcEEEEECCC-----CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCc
Q 016318 142 TGDLYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 142 ~g~L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
.+++||.|... .++.+|.+++++.=... . .+.-.++++++| .+|++++ -|.|. ..+..+.
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~----g~~~~~~~spdgk~~y~a~T--~~sR~------~rG~RtD 67 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--T----GFLGNVALSPDGKTIYVAET--FYSRG------TRGERTD 67 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--E----ESSEEEEE-TTSSEEEEEEE--EEEET------TEEEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEee--c----ccCCceeECCCCCEEEEEEE--EEecc------cccccee
Confidence 46888988732 38999988876432211 1 133347788888 5887763 22222 2233455
Q ss_pred eEEEEeCCCCeEEE--ecc------CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEecc
Q 016318 216 RVLKYDPTTKQTTV--LLR------NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIG 266 (391)
Q Consensus 216 ~l~~~d~~~~~~~~--~~~------~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g 266 (391)
-|-.||++|-+.+. .+. .+.+++-.+++.||+++||.+-. ...|.+++++.
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA 127 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC
Confidence 68889998875432 221 13467889999999999998754 45799998765
No 159
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.32 E-value=1.1 Score=43.17 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=80.2
Q ss_pred EccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeE
Q 016318 76 FDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLM 155 (391)
Q Consensus 76 ~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~ 155 (391)
++.+|+ +|+++.+|.|..++++.....-.. .+.. ....++-|. .. . +|++|+++....++
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~------~~~~---------~~~~~~~~~--~~-~-~G~i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSY------PLLG---------AVAQLSGPI--LG-S-DGKIYVGSWDGKLY 124 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecc------cCcC---------cceeccCce--EE-e-CCeEEEecccceEE
Confidence 455787 999999999999998832221100 0100 000122232 22 2 68899998665699
Q ss_pred EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc---
Q 016318 156 KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR--- 232 (391)
Q Consensus 156 ~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--- 232 (391)
++|..+|+..-.. ...+ ... ..+-++-.++.+|+.+. +|.++++|.++|+..-..+
T Consensus 125 ~ld~~~G~~~W~~-~~~~-~~~-~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 125 ALDASTGTLVWSR-NVGG-SPY-YASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred EEECCCCcEEEEE-ecCC-CeE-EecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCC
Confidence 9999766533221 1122 011 11223444788888842 3789999998887643311
Q ss_pred --CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEec
Q 016318 233 --NLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLI 265 (391)
Q Consensus 233 --~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~ 265 (391)
......... ..++. +|+.... +..++.++..
T Consensus 184 ~~~~~~~~~~~-~~~~~-vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 184 PLSLSIYGSPA-IASGT-VYVGSDGYDGILYALNAE 217 (370)
T ss_pred ccccccccCce-eecce-EEEecCCCcceEEEEEcc
Confidence 111222222 23454 7776442 4478888763
No 160
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.26 E-value=0.83 Score=41.12 Aligned_cols=188 Identities=10% Similarity=0.054 Sum_probs=109.2
Q ss_pred EEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 74 MAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 74 i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
|-+..+|+++|++..|.....|-.. ..-++ ...-|..+.+.+|.+...|..+.+
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-----------------------~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-----------------------DGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeee-----------------------cCCCceEEEEEecCCcceeeeccc
Confidence 4466789988988888766655321 22222 112456677778774556666666
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC-------
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT------- 223 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~------- 223 (391)
.+.+-.+|.++|+....... + .....+.++.+|++....+-. .+...+.|..||..
T Consensus 73 D~t~kLWDv~tGk~la~~k~--~---~~Vk~~~F~~~gn~~l~~tD~------------~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKT--N---SPVKRVDFSFGGNLILASTDK------------QMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred cceeEEEEcCCCcEEEEeec--C---CeeEEEeeccCCcEEEEEehh------------hcCcceEEEEEEccCChhhhc
Confidence 67777888888865433221 1 234567788888765543210 01123445556544
Q ss_pred CCe-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 224 TKQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 224 ~~~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
..+ ..++...-..++..-++|-+++|+ +-..++.|.+|++..... ..+.-.......++|..+++..++++......
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCcc
Confidence 222 233333335667777899999665 446788999998653210 00110111234678999999999998665444
Q ss_pred h
Q 016318 303 L 303 (391)
Q Consensus 303 ~ 303 (391)
.
T Consensus 214 a 214 (327)
T KOG0643|consen 214 A 214 (327)
T ss_pred c
Confidence 3
No 161
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.21 E-value=0.15 Score=48.41 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=106.4
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
|-...-..++|.|+|+.+-+++.|..=.-||-..-.+.. ..+...--..+++|.+ +|.|
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL--------------------~QEGHs~~v~~iaf~~-DGSL 317 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL--------------------LQEGHSKGVFSIAFQP-DGSL 317 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhH--------------------hhcccccccceeEecC-CCce
Confidence 334455678899999988888888643334433111110 1111122346888988 7888
Q ss_pred EEEECCCCe-EEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 146 YIADAYFGL-MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 146 ~V~d~~~gl-~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
.....-..+ ...|..+|....+.. | .+....+|+++|+|....|.++ ++..-.+|...
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~im~L~---g-H~k~I~~V~fsPNGy~lATgs~-----------------Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRCIMFLA---G-HIKEILSVAFSPNGYHLATGSS-----------------DNTCKVWDLRM 376 (459)
T ss_pred eeccCccchhheeecccCcEEEEec---c-cccceeeEeECCCceEEeecCC-----------------CCcEEEeeecc
Confidence 765433333 345777776554432 2 2456789999999988787754 45555555543
Q ss_pred CeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 225 KQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 225 ~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
.+. -++...-.....|.++|+....+++....+.+..+.-.+ -...+.++...+-.-++.+.++|.+.++....|+
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 222 122222234567889986555666656666555543221 1112222222223345667788876666555444
No 162
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.81 Score=40.06 Aligned_cols=214 Identities=15% Similarity=0.202 Sum_probs=101.0
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEe--ecCC--CcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAF--TSNN--RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
+.-.+++|.|.|. +|+-..+.+-+|+-.- ....... .... .+..|. ...+..|...+.++++ .|
T Consensus 33 qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k---------r~khhkgsiyc~~ws~-~g 101 (350)
T KOG0641|consen 33 QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK---------RNKHHKGSIYCTAWSP-CG 101 (350)
T ss_pred hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEee---------eccccCccEEEEEecC-cc
Confidence 4667899999999 7766666666666221 1100000 0000 011222 2233456677888888 78
Q ss_pred cEEEEECCCC---eEEEeCCCCeeEEce---eccCCC--cccC------Ccce-eecC--CCCEEEEeCCCcccchh---
Q 016318 144 DLYIADAYFG---LMKVGPEGGLATSLA---TEAEGV--PLRF------TNDL-DIDD--EGNVYFTDSSTNYQRRN--- 203 (391)
Q Consensus 144 ~L~V~d~~~g---l~~~d~~~g~~~~~~---~~~~~~--~~~~------~~~l-~~d~--~G~ly~td~~~~~~~~~--- 203 (391)
+|+...+... ++.||.+|....-.. ...+|. .+.| -..+ +... |=+||++|.+..-+.+.
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 8877644322 666666653321100 011111 0000 0112 2222 33799998553322110
Q ss_pred ---hee--------eecccCCCceEEEEeCCCC-eEEEecc-----CC--CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 204 ---FMQ--------LVFSAEDTGRVLKYDPTTK-QTTVLLR-----NL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 204 ---~~~--------~~~~~~~~g~l~~~d~~~~-~~~~~~~-----~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
+++ .+..+..+..+-.||..-. -+.++.. ++ .....++++|.|+ |+++.........|++
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEe
Confidence 011 0112222333333443211 1122211 11 1234688999999 7777777778899998
Q ss_pred ccccCccceeecccCCCCCceEeCCCCCEEEE
Q 016318 265 IGEKAGNLEAFAILPGYPDNVRTNEKGEFWVA 296 (391)
Q Consensus 265 ~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva 296 (391)
.|... .+.|.-...-.+.+++++.-.+.+.
T Consensus 261 rg~r~--iq~f~phsadir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 261 RGGRM--IQRFHPHSADIRCVRFSPGAHYLLT 290 (350)
T ss_pred eCCce--eeeeCCCccceeEEEeCCCceEEEE
Confidence 88532 2223211122456778876554444
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.15 E-value=0.45 Score=41.44 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=72.4
Q ss_pred CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEecc
Q 016318 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLR 232 (391)
Q Consensus 153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~ 232 (391)
.|+.++..+..+..+.....+ ...+++-.|+|+-++.-.+ .....+..||.+...+..+.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g---------------~~~~~v~lyd~~~~~i~~~~- 99 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYG---------------SMPAKVTLYDVKGKKIFSFG- 99 (194)
T ss_pred EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEc---------------cCCcccEEEcCcccEeEeec-
Confidence 477777665544444222111 3788899999864332211 11247888888755554443
Q ss_pred CCCCcceEEEccCCCEEEEEeCC--CCeEEEEEeccccCccceeeccc-CCCCCceEeCCCCCEEEEEcC
Q 016318 233 NLQFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEKAGNLEAFAIL-PGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 233 ~~~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~~g~~~~~~~~-~g~p~~i~~d~~G~lwva~~~ 299 (391)
-...|.|.++|+|+++.++... .+.|..++... .+.+... ......+..+++|+++++...
T Consensus 100 -~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 100 -TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred -CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 2456889999999988887643 34577776542 2222221 122456888999997776543
No 164
>PRK13684 Ycf48-like protein; Provisional
Probab=96.10 E-value=1.4 Score=42.04 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=88.1
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
.-+|+|..+.+.++++ ..|.|++=... .|+......+ ....+...+.+.. ++.|++
T Consensus 48 l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~~~~~~-------------------~~~~~l~~v~~~~--~~~~~~ 105 (334)
T PRK13684 48 LLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEERSLDLP-------------------EENFRLISISFKG--DEGWIV 105 (334)
T ss_pred eEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceECccCCc-------------------ccccceeeeEEcC--CcEEEe
Confidence 3457776555534444 46777776332 5554321100 0012234667753 457777
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
.....|++-+-.+...+.+..... .+ ..+..+....++.+|+... .|.+++-+...+..+
T Consensus 106 G~~g~i~~S~DgG~tW~~~~~~~~-~~-~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~ 165 (334)
T PRK13684 106 GQPSLLLHTTDGGKNWTRIPLSEK-LP-GSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWE 165 (334)
T ss_pred CCCceEEEECCCCCCCeEccCCcC-CC-CCceEEEEECCCcceeeec------------------cceEEEECCCCCCce
Confidence 544446665433334444321100 00 1233343333445565543 366777665555555
Q ss_pred EeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcC
Q 016318 229 VLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 229 ~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~ 299 (391)
.+.... ...+++++.+++.++.+ ..++.+++-.-+|. .+.+.... ......++.+.++|++|++...
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~--g~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAV--SSRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEE--eCCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 544332 24567888888864433 33456666532221 11111111 1123456777788888876444
No 165
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.06 E-value=0.93 Score=43.66 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=48.0
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~ 151 (391)
-++|+.+||+.+.+|..+..|..|+.+....+... ...++...+++|-....+||.+.+.
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecC
Confidence 36789999997777888888888877633332211 1235667788887656789999888
Q ss_pred CCeEEEeCC
Q 016318 152 FGLMKVGPE 160 (391)
Q Consensus 152 ~gl~~~d~~ 160 (391)
.++-.++.+
T Consensus 266 rsvkvw~~~ 274 (479)
T KOG0299|consen 266 RSVKVWSID 274 (479)
T ss_pred CceEEEehh
Confidence 887666654
No 166
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.71 Score=42.05 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce--EEEEeCCCCeEEEec--cC-----CCCcceEEEccCC
Q 016318 176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR--VLKYDPTTKQTTVLL--RN-----LQFPNGLSLSKDK 246 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~--~~-----~~~~ngia~~~d~ 246 (391)
......++.++||++|+.... ++.++.. |+-....++.++.+. +. -++.-.||...+.
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy-------------~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~ 291 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQY-------------RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD 291 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEe-------------eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC
Confidence 356788999999999999732 1222221 222223333333321 00 1234468887777
Q ss_pred CEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCC
Q 016318 247 SFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 247 ~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~ 300 (391)
.++.++...+++...++.+. |....-..++. ..++.....| +-|++..+
T Consensus 292 glV~lTSP~GN~~vi~da~t---G~vv~~a~l~d-aaGva~~~~g-f~vssg~G 340 (366)
T COG3490 292 GLVALTSPRGNRAVIWDAAT---GAVVSEAALPD-AAGVAAAKGG-FAVSSGQG 340 (366)
T ss_pred CeEEEecCCCCeEEEEEcCC---CcEEecccccc-cccceeccCc-eEEecCCc
Confidence 76777766667777766442 33222222221 2356665544 55555444
No 167
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.97 E-value=0.12 Score=47.31 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE---eccCCCCcceEEEccCCCEEEEEeC
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV---LLRNLQFPNGLSLSKDKSFFVFCEG 254 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~ngia~~~d~~~l~v~et 254 (391)
-.|.+++.|...|.++.+. ++.|-.||-..-..+. +..+......|.++|.|++|+++ |
T Consensus 174 evn~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-T 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-T 235 (430)
T ss_pred cccceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-c
Confidence 4688999999999888754 4556556643222222 22333445689999999999887 6
Q ss_pred CCCeEEEEEeccccCccceeecc-cC-----CCCCceEeCCCCCEEEEEcCCCc
Q 016318 255 SVGRLHKYWLIGEKAGNLEAFAI-LP-----GYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 255 ~~~~I~~~~~~g~~~g~~~~~~~-~~-----g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
....+..|++.. .+-|.. .| +....+..++.|++||+......
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCc
Confidence 667777787643 333431 11 22334677899999998665433
No 168
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.97 E-value=1.1 Score=40.13 Aligned_cols=183 Identities=11% Similarity=0.121 Sum_probs=96.7
Q ss_pred CccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCC-CCEEEEeCCCcccchhheee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~ 207 (391)
...+.+++.. +|.-.++.+. +-+...+.+.... ....... .......++-++. ..++++.++
T Consensus 21 ~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas~----------- 85 (313)
T KOG1407|consen 21 QKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATASG----------- 85 (313)
T ss_pred hcceEEEEcc-cCceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEecC-----------
Confidence 3345666665 4444343333 3344444443311 1111111 1124566777764 467777655
Q ss_pred ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
...+..+|...++.......-..-.-++.+|+|+++.+.+ ...+|..++....+.-..+. .+-....++.
T Consensus 86 ------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~~---~~~e~ne~~w 155 (313)
T KOG1407|consen 86 ------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEEQ---FKFEVNEISW 155 (313)
T ss_pred ------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehhc---ccceeeeeee
Confidence 3467778877666554444434555789999999887774 46788888754322111111 2223456777
Q ss_pred CCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEE
Q 016318 288 NEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQV 353 (391)
Q Consensus 288 d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~ 353 (391)
.-++++++.+.+...+- +..||.++.+ ..+ .+- ...-.-++|||+|+.+.+
T Consensus 156 ~~~nd~Fflt~GlG~v~---ILsypsLkpv-~si----------~AH-~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVE---ILSYPSLKPV-QSI----------KAH-PSNCICIEFDPDGRYFAT 206 (313)
T ss_pred cCCCCEEEEecCCceEE---EEeccccccc-ccc----------ccC-CcceEEEEECCCCceEee
Confidence 77778888777643321 2234433221 111 110 223456789999987643
No 169
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.97 E-value=0.3 Score=43.76 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=64.9
Q ss_pred EecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCce
Q 016318 138 FDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 138 ~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
.|.+.|-+|.+.....++.+|+.+-. -.+.....|.- ..+-++++ ++.+|++..+ |+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~---f~sP~i~~g~~sly~a~t~------------------G~ 158 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGT---FVSPVIAPGDGSLYAAITA------------------GA 158 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc-eEEecccCCce---eccceecCCCceEEEEecc------------------ce
Confidence 44445677888777779999987532 22222333332 22335666 8999999865 89
Q ss_pred EEEEeCCCCeEEEec----cC--CCCc----ceEEE-ccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 217 VLKYDPTTKQTTVLL----RN--LQFP----NGLSL-SKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 217 l~~~d~~~~~~~~~~----~~--~~~~----ngia~-~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
+++.++++....++. .+ +..| ..+.+ .-||..+-+.+. +..|||+.-+|+
T Consensus 159 vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp 219 (354)
T KOG4649|consen 159 VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP 219 (354)
T ss_pred EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence 999999887555542 11 1122 12222 237876666654 478999876664
No 170
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.95 E-value=0.49 Score=44.58 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred CcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 143 GDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 143 g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
++-.|.... .-++..++...+ +.+... .| .-...|.+.+.|||.+..+.+- +..|-.++
T Consensus 336 ~erlVSgsDd~tlflW~p~~~k-kpi~rm-tg-Hq~lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~ 395 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSK-KPITRM-TG-HQALVNHVSFSPDGRYIASASF-----------------DKSVKLWD 395 (480)
T ss_pred cceeEEecCCceEEEecccccc-cchhhh-hc-hhhheeeEEECCCccEEEEeec-----------------ccceeeee
Confidence 344554444 447777775322 111111 11 1236899999999876555432 34677788
Q ss_pred CCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCce---EeCCCCCEEEEE
Q 016318 222 PTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNV---RTNEKGEFWVAI 297 (391)
Q Consensus 222 ~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i---~~d~~G~lwva~ 297 (391)
..+|+...-.. ......-|+++.|.+ |+|+-+....|..+++.. .+...++||.-|.+ ..++||..-++.
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t-----kKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT-----KKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeee-----eeecccCCCCCceEEEEEecCCCceeecC
Confidence 88887644333 445567799999998 888877767777776543 24455788877654 346888766554
Q ss_pred cC
Q 016318 298 HC 299 (391)
Q Consensus 298 ~~ 299 (391)
..
T Consensus 470 gk 471 (480)
T KOG0271|consen 470 GK 471 (480)
T ss_pred CC
Confidence 43
No 171
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.90 E-value=1.3 Score=44.54 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
+|++.....++.+|.++|+..=- .... ..+++.++ +.+|+............-.........|+|+.+|..+
T Consensus 304 V~~g~~~G~l~ald~~tG~~~W~-~~~~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGKLISA-RPEV------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEECCCceEEEEECCCCcEeeE-eEee------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 66665444599999999863311 1110 12344444 7788854211000000000000122468899999998
Q ss_pred CeEEEeccCCC--------Cc---ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC----CCCceEeCC
Q 016318 225 KQTTVLLRNLQ--------FP---NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG----YPDNVRTNE 289 (391)
Q Consensus 225 ~~~~~~~~~~~--------~~---ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g----~p~~i~~d~ 289 (391)
|+..--.+... .+ ..+++ .++.||+.+ ..+.|+.++.+. |+..--.++++ .| +....
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~t---G~~lW~~~~~~~~~a~P--~~~~~ 447 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATT---GKELWKFRTPSGIQATP--MTYEV 447 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCC---CceeeEEECCCCceEcC--EEEEe
Confidence 87532221110 11 12333 445588874 567898888543 32211112322 12 33455
Q ss_pred CCCEEEEEcCC
Q 016318 290 KGEFWVAIHCR 300 (391)
Q Consensus 290 ~G~lwva~~~~ 300 (391)
+|++||+...+
T Consensus 448 ~g~~yv~~~~g 458 (488)
T cd00216 448 NGKQYVGVMVG 458 (488)
T ss_pred CCEEEEEEEec
Confidence 79999998765
No 172
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=1.4 Score=46.09 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=96.2
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.--+++|.|.-=.+.++.+.|.|.-||-..-+.+. ......|-..|+.|++ .+-|+|+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------rFdeHdGpVRgv~FH~-~qplFVSG 69 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------RFDEHDGPVRGVDFHP-TQPLFVSG 69 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------------------hhhccCCccceeeecC-CCCeEEec
Confidence 34478898887767788899999988764111111 1112246667999999 78999975
Q ss_pred CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
.. .-|-+++.++.+. +.+.. | .+.+...+.+... .=||-+.| .+-.|..||..+++..
T Consensus 70 GDDykIkVWnYk~rrc--lftL~-G-HlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRRC--LFTLL-G-HLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCI 128 (1202)
T ss_pred CCccEEEEEeccccee--hhhhc-c-ccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceE
Confidence 43 2355555554332 11110 1 1234444455433 44555443 2446667777777665
Q ss_pred EeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318 229 VLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK 268 (391)
Q Consensus 229 ~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~ 268 (391)
....+ -.+.-..+|+|-++ +.|+.+-...|.+++++|-+
T Consensus 129 avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchh
Confidence 55443 34666778999888 77888888899999998853
No 173
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.87 E-value=1.4 Score=43.09 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=71.6
Q ss_pred cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
.....+.+++..|+|+.....|-.+|......+.-. +.. ......+.+++.+|-++.|+..+
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprika-elt-ssapaCyALa~spDakvcFsccs---------------- 529 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA-ELT-SSAPACYALAISPDAKVCFSCCS---------------- 529 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhh-hcC-CcchhhhhhhcCCccceeeeecc----------------
Confidence 334455664556888865555666665543222111 100 01124678899999999999755
Q ss_pred CCceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 213 DTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
+|.|..||..+... +.+...-..+..|.+++||..||-. .-.+.+..+++..
T Consensus 530 -dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG-GlDntvRcWDlre 582 (705)
T KOG0639|consen 530 -DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG-GLDNTVRCWDLRE 582 (705)
T ss_pred -CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC-CCccceeehhhhh
Confidence 58899999876533 2333333456789999999988755 4567888888753
No 174
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=1.4 Score=40.35 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=86.4
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~ 148 (391)
+-.+|-+++.++.+.++++||.+..++.+..... .+-..+.| +..+|.. +...|++
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------~~~~~~~plL~c~F~d-~~~~~~G 71 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------LKFKHGAPLLDCAFAD-ESTIVTG 71 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------hheecCCceeeeeccC-CceEEEe
Confidence 4567778877777999999999988876511100 00011223 4667765 6789999
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
+....|.++|..++....+.+...+ ...|...+.-+..++. .-++++-.+|+....
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~-- 127 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKV-- 127 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCc-----eEEEEeeccCCeEEEc-----------------ccCccEEEEeccccc--
Confidence 8887899999999876666554332 2233333322233332 124677788876421
Q ss_pred EeccCCCCcceE-EEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 229 VLLRNLQFPNGL-SLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 229 ~~~~~~~~~ngi-a~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.......++-| +.+-.++.|.|+ +.+.++..|++..
T Consensus 128 -~~~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 128 -VVGTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN 164 (323)
T ss_pred -cccccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence 11112222222 344456657775 5667888888653
No 175
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.85 E-value=1.1 Score=43.52 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=78.9
Q ss_pred cCccceEEEecCCCcEEEEEC-------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCccc--
Q 016318 130 CGRPLGLRFDKKTGDLYIADA-------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ-- 200 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~-------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~-- 200 (391)
..+|+-...-+ +|+++|..- ..|++.+|.+|-++.-.... +.....+-+++-..+.-++-+|++=....
T Consensus 129 ~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 129 LSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHH
T ss_pred CCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence 56788888888 788888632 12499999887555433322 12223567888888888888876311111
Q ss_pred -chhheeeecccCCCceEEEEeCCCCeEEEeccCC---CCcceEEE--ccCCCEEEEEeCCCCeEEEEEeccccCcccee
Q 016318 201 -RRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSL--SKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA 274 (391)
Q Consensus 201 -~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~ngia~--~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~ 274 (391)
......++..+.--.+|..||..+++..+..+-. ..|--|.+ +|+..+=+|+-..+..||++..+.+..-..+.
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k 286 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK 286 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence 1111223333322347999999998877665332 23433443 45566566666667789998763221111111
Q ss_pred e--------------------cccCCCCCceEeCCCCC-EEEEEcCCCc
Q 016318 275 F--------------------AILPGYPDNVRTNEKGE-FWVAIHCRRS 302 (391)
Q Consensus 275 ~--------------------~~~~g~p~~i~~d~~G~-lwva~~~~~~ 302 (391)
. ...|+++..|.++-|.+ ||++......
T Consensus 287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd 335 (461)
T PF05694_consen 287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD 335 (461)
T ss_dssp EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence 1 11267788898988887 8898776443
No 176
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.82 E-value=0.47 Score=44.68 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=89.7
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
--++.|.|+|..+.+|+.|..+..||.+.-+.. ..|.+ .....+.++++| +|..++...
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--------~t~Kg------------H~~WVlcvawsP-Dgk~iASG~ 176 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--------FTCKG------------HKNWVLCVAWSP-DGKKIASGS 176 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcc--------eeecC------------CccEEEEEEECC-Ccchhhccc
Confidence 346788999998999999998888887721111 11321 135578899999 666665555
Q ss_pred CCC-eEEEeCCCCeeEEceeccCCCcccCCcceee-----cCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 151 YFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDI-----DDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 151 ~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-----d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
..| |..+||++|+. +.....|. -....+++. ++..+...+. + .+|.+..+|...
T Consensus 177 ~dg~I~lwdpktg~~--~g~~l~gH-~K~It~Lawep~hl~p~~r~las~-s----------------kDg~vrIWd~~~ 236 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQ--IGRALRGH-KKWITALAWEPLHLVPPCRRLASS-S----------------KDGSVRIWDTKL 236 (480)
T ss_pred cCCeEEEecCCCCCc--ccccccCc-ccceeEEeecccccCCCccceecc-c----------------CCCCEEEEEccC
Confidence 555 99999998842 22222221 134555554 3344533333 2 367888888877
Q ss_pred CeEEEeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 225 KQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 225 ~~~~~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
++......+- .....|...-+| +..+.+...+|..+..
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRA 275 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEc
Confidence 6655544433 233456665444 4445455666666653
No 177
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.81 E-value=0.71 Score=44.46 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
+++-++.|..+..|+..|.|+.|....-..+.... ..--....+.|.. +|.++|.....
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------------------aHYQ~ITcL~fs~-dgs~iiTgskD 144 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------------------AHYQSITCLKFSD-DGSHIITGSKD 144 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHH--------------------hhccceeEEEEeC-CCcEEEecCCC
Confidence 56677889977778789999999765111100000 0011134677876 78888876665
Q ss_pred C-eEEEeCC-------CCeeEEceeccCCCcccCCcceeecCCC---CEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 153 G-LMKVGPE-------GGLATSLATEAEGVPLRFTNDLDIDDEG---NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 153 g-l~~~d~~-------~g~~~~~~~~~~~~~~~~~~~l~~d~~G---~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
| ++.+... +...+.+.. ..+ .-....++.++.-| ++|-+. .+..+-.||
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~-f~~-HtlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wd 204 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHI-FSD-HTLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWD 204 (476)
T ss_pred ccEEEEEEEeecccccCCCccceee-ecc-CcceeEEEEecCCCccceEEEec------------------CCceEEEEE
Confidence 5 4444321 111111100 000 01234455554432 333322 134566788
Q ss_pred CCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 222 PTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 222 ~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
...+.+-.-..-...++.++++|-++.+|+. +..+.|+...+.+
T Consensus 205 lS~g~LLlti~fp~si~av~lDpae~~~yiG-t~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 205 LSLGVLLLTITFPSSIKAVALDPAERVVYIG-TEEGKIFQNLLFK 248 (476)
T ss_pred eccceeeEEEecCCcceeEEEcccccEEEec-CCcceEEeeehhc
Confidence 7777543322223356789999999988887 6678999887654
No 178
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.80 E-value=0.87 Score=43.64 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=88.8
Q ss_pred eEEEecCCCc-EEEEECCC-----CeEEEeCCCCeeEEceeccCCCcccCCcceeec-CCC--CEEEEeCCCcccchhhe
Q 016318 135 GLRFDKKTGD-LYIADAYF-----GLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEG--NVYFTDSSTNYQRRNFM 205 (391)
Q Consensus 135 gi~~d~~~g~-L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G--~ly~td~~~~~~~~~~~ 205 (391)
.+.+.+ +++ +++.-..+ -++.+|..++..+.+.......-+.....+.+- ++| -+|++. .
T Consensus 188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~--------- 256 (353)
T PF00930_consen 188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R--------- 256 (353)
T ss_dssp EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T---------
T ss_pred cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c---------
Confidence 455656 455 77654332 178889888877766544333323333444443 433 355554 2
Q ss_pred eeecccCCCceEEEEeCCCCeEEEeccCCCCcc-eEEEccCCCEEEEEeCC----CCeEEEEEec-cccCccceeecccC
Q 016318 206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN-GLSLSKDKSFFVFCEGS----VGRLHKYWLI-GEKAGNLEAFAILP 279 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n-gia~~~d~~~l~v~et~----~~~I~~~~~~-g~~~g~~~~~~~~~ 279 (391)
.+-..|+.++.+++..+.+..+-...+ -+.++++++.||+..+. ...|++++++ + +..+.+....
T Consensus 257 ------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~ 327 (353)
T PF00930_consen 257 ------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCED 327 (353)
T ss_dssp ------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTS
T ss_pred ------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCC
Confidence 234589999999988887766654443 36788999999988775 3579999887 4 3344443322
Q ss_pred CCCCceEeCCCCCEEEEEcCC
Q 016318 280 GYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 280 g~p~~i~~d~~G~lwva~~~~ 300 (391)
+.-..+.++++|++++-..++
T Consensus 328 ~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 328 GDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp STTEEEEE-TTSSEEEEEEES
T ss_pred CCceEEEECCCCCEEEEEEcC
Confidence 211378999999988876654
No 179
>PTZ00420 coronin; Provisional
Probab=95.77 E-value=2.7 Score=42.92 Aligned_cols=118 Identities=8% Similarity=-0.044 Sum_probs=69.4
Q ss_pred cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCe--eEEce---eccCCCcccCCcceeecCCCCEE-EEeCCCcccch
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGL--ATSLA---TEAEGVPLRFTNDLDIDDEGNVY-FTDSSTNYQRR 202 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~--~~~~~---~~~~~~~~~~~~~l~~d~~G~ly-~td~~~~~~~~ 202 (391)
.+....+++++.+++++++....| |..+|..++. ...+. ....+ .....+.+++.+++... ++.+.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~------ 146 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGF------ 146 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeC------
Confidence 355678999884355555444444 7777765431 11110 01111 12356788999988644 34322
Q ss_pred hheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 203 NFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 203 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
++.|..||..+++.............++++++|+.+ ++....+.|..+++..
T Consensus 147 -----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 147 -----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK 198 (568)
T ss_pred -----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence 578888998877643322222346789999999954 5445566788887653
No 180
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.72 E-value=1.5 Score=40.90 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=54.4
Q ss_pred cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcc--cCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL--RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~--~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~ 207 (391)
..|...|.|++ +++||+.. ..|.+++.......+........... ...-+++..+++.+|++..+
T Consensus 186 ~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------- 252 (302)
T PF14870_consen 186 SRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------- 252 (302)
T ss_dssp SS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-----------
T ss_pred cceehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-----------
Confidence 35667899998 79999987 45566665433344444332211111 12356678888999998754
Q ss_pred ecccCCCceEEEEeCCCCeEEEeccCCCC---cceEEEccCCCEEEEEeCCCCeEEEE
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKY 262 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---~ngia~~~d~~~l~v~et~~~~I~~~ 262 (391)
|.|++-.-..+..+........ ..-|.+..+++-..+. .++-|.||
T Consensus 253 -------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 253 -------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp -------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred -------ccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 6666655444455554332222 2345554444423333 35567776
No 181
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.69 E-value=1.1 Score=40.01 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=64.1
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCC-CeeEEceeccCCCcccCCcce---eecCCCCEEEEeCCCcccchhhee
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEG-GLATSLATEAEGVPLRFTNDL---DIDDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~-g~~~~~~~~~~~~~~~~~~~l---~~d~~G~ly~td~~~~~~~~~~~~ 206 (391)
..+..+.++. +|++.....+.+|--.|+++ +.++.+ .-|..+ ...|+-.+|++...
T Consensus 185 s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf~~lKs~---------k~P~nV~SASL~P~k~~fVaGge---------- 244 (334)
T KOG0278|consen 185 SPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSFGLLKSY---------KMPCNVESASLHPKKEFFVAGGE---------- 244 (334)
T ss_pred CCCcceeecc-CCCEEEEecCceeEEeccccccceeec---------cCccccccccccCCCceEEecCc----------
Confidence 3456778887 67776665566687777764 222222 123333 34567788888632
Q ss_pred eecccCCCceEEEEeCCCCeEEEe-ccCC-CCcceEEEccCCCEEEEEeCCCCe
Q 016318 207 LVFSAEDTGRVLKYDPTTKQTTVL-LRNL-QFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~~~~~~-~~~~-~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
+..+++||-.|++-... ..+- .....+.++|||. +|.+.+..+.
T Consensus 245 -------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT 290 (334)
T KOG0278|consen 245 -------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT 290 (334)
T ss_pred -------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence 56899999988865554 2333 3446899999999 8877655543
No 182
>PRK13684 Ycf48-like protein; Provisional
Probab=95.66 E-value=2.1 Score=40.76 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=71.7
Q ss_pred ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
.+..+.... ++.+|++.....|++-+-.+...+.+.... ....++++.+++|.+++...
T Consensus 133 ~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~~~i~~~~~g~~v~~g~---------------- 191 (334)
T PRK13684 133 SPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVVRNLRRSPDGKYVAVSS---------------- 191 (334)
T ss_pred CceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCCC----cceEEEEEECCCCeEEEEeC----------------
Confidence 455555443 456777755555777665555555543322 22467788888877666553
Q ss_pred CCCceEEEEeCCCC-eEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-----CCCc
Q 016318 212 EDTGRVLKYDPTTK-QTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-----YPDN 284 (391)
Q Consensus 212 ~~~g~l~~~d~~~~-~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-----~p~~ 284 (391)
.|.+++-....+ ........ ....+++++.++++ +|+... .+.+.+-.-++.. +.+.. ..|. ...+
T Consensus 192 --~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~-~G~~~~~s~d~G~--sW~~~-~~~~~~~~~~l~~ 264 (334)
T PRK13684 192 --RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR-GGQIRFNDPDDLE--SWSKP-IIPEITNGYGYLD 264 (334)
T ss_pred --CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec-CCEEEEccCCCCC--ccccc-cCCccccccceee
Confidence 256666422223 34443322 24567888888888 444432 2333221222211 11111 1111 1234
Q ss_pred eEeCCCCCEEEEEcC
Q 016318 285 VRTNEKGEFWVAIHC 299 (391)
Q Consensus 285 i~~d~~G~lwva~~~ 299 (391)
+.+.+++.+|++...
T Consensus 265 v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 265 LAYRTPGEIWAGGGN 279 (334)
T ss_pred EEEcCCCCEEEEcCC
Confidence 666777888876543
No 183
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.59 E-value=0.38 Score=46.83 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=83.2
Q ss_pred ccCccCccc--eEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccc
Q 016318 126 NEHICGRPL--GLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQR 201 (391)
Q Consensus 126 ~~~~~g~P~--gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~ 201 (391)
.|.++..|. .+++++ +-++.++... ..|.++|.... .++..+.|. -.....|++.+|| +||-..
T Consensus 503 aeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq---~~VrqfqGh-tDGascIdis~dGtklWTGG------- 570 (705)
T KOG0639|consen 503 AELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-TDGASCIDISKDGTKLWTGG------- 570 (705)
T ss_pred hhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccc---eeeecccCC-CCCceeEEecCCCceeecCC-------
Confidence 334454444 566677 4555554444 44888887642 222333332 1235678888899 566553
Q ss_pred hhheeeecccCCCceEEEEeCCCCeEEEec-cCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC
Q 016318 202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP 279 (391)
Q Consensus 202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~ 279 (391)
.++.|-+||...+. .+. .++. ..-.+-..|.++||.|. ..++.++.....++.+.+... ..
T Consensus 571 -----------lDntvRcWDlregr--qlqqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp~kyqlhl---he 633 (705)
T KOG0639|consen 571 -----------LDNTVRCWDLREGR--QLQQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKPEKYQLHL---HE 633 (705)
T ss_pred -----------Cccceeehhhhhhh--hhhhhhhhhhheecccCCCccceeee-cccCcEEEEecCCccceeecc---cc
Confidence 24678889876543 221 1221 12234456899988887 567788888766653222110 01
Q ss_pred CCCCceEeCCCCCEEEEEcCC
Q 016318 280 GYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 280 g~p~~i~~d~~G~lwva~~~~ 300 (391)
.-.-++.+..-|..||++...
T Consensus 634 ScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred cEEEEEEecccCceeeecCch
Confidence 112356788999999987654
No 184
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.59 E-value=0.18 Score=46.20 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc-EEEEEC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD-LYIADA 150 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~-L~V~d~ 150 (391)
..+.|.|...++..++.|+.|-.+|-.+ .+.. +.+.....+--...|.|+| .|+ |.|+..
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK------~saK------------rA~K~~qd~~~vrsiSfHP-sGefllvgTd 236 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSK------TSAK------------RAFKVFQDTEPVRSISFHP-SGEFLLVGTD 236 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEeccc------HHHH------------HHHHHhhccceeeeEeecC-CCceEEEecC
Confidence 4567788888788888888777665431 0000 0001111133346889999 555 666654
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL 230 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 230 (391)
..-+..+|..|-+.-.-..+ +.+.-...+.+-..+.|++|+|.+. +|.+-.||.-+++...-
T Consensus 237 Hp~~rlYdv~T~QcfvsanP-d~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANP-DDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRT 298 (430)
T ss_pred CCceeEEeccceeEeeecCc-ccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHH
Confidence 44466677766433222221 1222335677778889999999865 57777788655543221
Q ss_pred ---ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 231 ---LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 231 ---~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
..+........|+.++++++- ++...+.++|
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLW 332 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLW 332 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEee--cCCcceeeee
Confidence 123334455668889985542 4455555555
No 185
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.36 E-value=0.96 Score=46.49 Aligned_cols=187 Identities=10% Similarity=0.060 Sum_probs=108.3
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
+|....++ .|.+++.|..+--|.+. -...|.+ .....+++|.|-+++.++..
T Consensus 374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H------------------------ndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSH------------------------NDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ecccccCC-eeEeccccccEEeecCCCcceeeEEec------------------------CCeeEEEEecccCCCcEeec
Confidence 45555444 48888888877777665 2333322 34567899999778888876
Q ss_pred CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
.-.| +-.++....++..... .. ..+..++..|||..-|..+- +|....|+..+.+..
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~D-l~----~lITAvcy~PdGk~avIGt~-----------------~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWND-LR----DLITAVCYSPDGKGAVIGTF-----------------NGYCRFYDTEGLKLV 486 (712)
T ss_pred ccccceEEeecCcCeeEeehh-hh----hhheeEEeccCCceEEEEEe-----------------ccEEEEEEccCCeEE
Confidence 5544 5555555444443322 11 25677889999976665533 477888888766554
Q ss_pred Eec----c-----CCCCcceEEEccCC-CEEEEEeCCCCeEEEEEecccc-CccceeecccCCCCCceEeCCCCCEEEEE
Q 016318 229 VLL----R-----NLQFPNGLSLSKDK-SFFVFCEGSVGRLHKYWLIGEK-AGNLEAFAILPGYPDNVRTNEKGEFWVAI 297 (391)
Q Consensus 229 ~~~----~-----~~~~~ngia~~~d~-~~l~v~et~~~~I~~~~~~g~~-~g~~~~~~~~~g~p~~i~~d~~G~lwva~ 297 (391)
.-. . ......|+++.|.. +.|+|+ +...||..|+..... .-+++-|.+.. ..-.-.++.+|+..|..
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~-SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTS-SQISASFSSDGKHIVSA 564 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCC-cceeeeEccCCCEEEEe
Confidence 321 1 01246788877532 347787 677899999853210 01111121111 11123455677777766
Q ss_pred cCCCchhhhhh
Q 016318 298 HCRRSLYSHLM 308 (391)
Q Consensus 298 ~~~~~~~~~~l 308 (391)
.....++.|-+
T Consensus 565 seDs~VYiW~~ 575 (712)
T KOG0283|consen 565 SEDSWVYIWKN 575 (712)
T ss_pred ecCceEEEEeC
Confidence 66666666544
No 186
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.36 E-value=0.24 Score=47.35 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=55.0
Q ss_pred cCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCC-cceEEEccCCCEEEEEeC
Q 016318 177 RFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF-PNGLSLSKDKSFFVFCEG 254 (391)
Q Consensus 177 ~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~-~ngia~~~d~~~l~v~et 254 (391)
.+.+.=++.++| .|.|+... .+...++.+|.++++.+++.++-.. ..|..++++.+.+|...
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~- 99 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK- 99 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-
T ss_pred eeecCCCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-
Confidence 345555667788 46665421 2345799999999999999876432 33778888888876543
Q ss_pred CCCeEEEEEeccccCccceeecccC-CCC--CceEeCCCCCEEEEEcC
Q 016318 255 SVGRLHKYWLIGEKAGNLEAFAILP-GYP--DNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 255 ~~~~I~~~~~~g~~~g~~~~~~~~~-g~p--~~i~~d~~G~lwva~~~ 299 (391)
.+.+|++++++.. +.+.+...| ++- .....+++++.+++...
T Consensus 100 ~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~ 144 (386)
T PF14583_consen 100 NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVANSDCTKLVGIEI 144 (386)
T ss_dssp TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEE
T ss_pred CCCeEEEEECCcC---cEEEEEECCcccccccceeeCCCccEEEEEEE
Confidence 3468999998763 223333333 211 22345778888877543
No 187
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.35 E-value=3 Score=40.53 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=82.7
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
..-.+++...+|+.|.+|..+|.+..|+.+ ...++.. ..+-...+...+ .|+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~-----------------------HkgPI~slKWnk-~G~yi 291 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ-----------------------HKGPIFSLKWNK-KGTYI 291 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc-----------------------cCCceEEEEEcC-CCCEE
Confidence 345678898999999999999988888765 2222211 123345777876 56544
Q ss_pred EEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC-C
Q 016318 147 IADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT-T 224 (391)
Q Consensus 147 V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~ 224 (391)
++.. .+-+..+|..+|+++....... .-+++++-.++-=|+.++ .+|.++.|... +
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~~~s------~~~lDVdW~~~~~F~ts~----------------td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFEFHS------APALDVDWQSNDEFATSS----------------TDGCIHVCKVGED 349 (524)
T ss_pred EeccCCccEEEEeccCceEEEeeeecc------CCccceEEecCceEeecC----------------CCceEEEEEecCC
Confidence 4433 3448888988887765433221 113445443332233332 24555444322 1
Q ss_pred CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 016318 225 KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLH 260 (391)
Q Consensus 225 ~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~ 260 (391)
.-+..+...-...|++-++|.+. |+.+-+....+.
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLK 384 (524)
T ss_pred CcceeeecccCceEEEEECCCCc-eEEEecCCCeeE
Confidence 22334444445678899999998 555544444433
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.16 E-value=2.1 Score=40.26 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=67.0
Q ss_pred ccceE-EEecCCCcEEEEE---CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318 132 RPLGL-RFDKKTGDLYIAD---AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 132 ~P~gi-~~d~~~g~L~V~d---~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~ 206 (391)
.|.|+ ++++...+-|++= ...| |+.+|..+=+.......+.+ ..-.++++++|++..|.+-
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs~~G~llATASe---------- 193 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFSPDGTLLATASE---------- 193 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEECCCCCEEEEecc----------
Confidence 35543 3444344455542 2234 77787664321111112222 3567899999999888754
Q ss_pred eecccCCCceEEE-EeCCCC-eEEEeccCCC--CcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 207 LVFSAEDTGRVLK-YDPTTK-QTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 207 ~~~~~~~~g~l~~-~d~~~~-~~~~~~~~~~--~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.|+|+| |...+| ++..+..+.. ....++|++|+++|.++ +.+..|+.|.++.
T Consensus 194 -------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 194 -------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEK 249 (391)
T ss_pred -------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEecc
Confidence 477776 444444 4555555554 23478999999976655 6677888887764
No 189
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.11 E-value=2.7 Score=40.63 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=78.1
Q ss_pred cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318 133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
..+++-++ .|...++..-.| ||.+...+|..-.+... .......+.+..||.++||.+.
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs~iiTgsk--------------- 143 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGSHIITGSK--------------- 143 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCcEEEecCC---------------
Confidence 35667676 677777764444 88888888854322211 1234566788889999898754
Q ss_pred CCCceEEEEeCCC-------CeE---EEeccCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEeccccCccceeec--c
Q 016318 212 EDTGRVLKYDPTT-------KQT---TVLLRNLQFPNGLSLSKD--KSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--I 277 (391)
Q Consensus 212 ~~~g~l~~~d~~~-------~~~---~~~~~~~~~~ngia~~~d--~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~ 277 (391)
+|.|+.|...+ +.+ ..+.+.-.....+.+++- ...||-+ +..+.+..+++... ..+. .
T Consensus 144 --Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g-----~LLlti~ 215 (476)
T KOG0646|consen 144 --DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLG-----VLLLTIT 215 (476)
T ss_pred --CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccc-----eeeEEEe
Confidence 56777665311 111 111111011122333322 1225433 55667777777653 2222 3
Q ss_pred cCCCCCceEeCCCCC-EEEEEcCC
Q 016318 278 LPGYPDNVRTNEKGE-FWVAIHCR 300 (391)
Q Consensus 278 ~~g~p~~i~~d~~G~-lwva~~~~ 300 (391)
+|..+..+++|+.++ +|+++..+
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcc
Confidence 566678899998877 88876553
No 190
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.00 E-value=3.1 Score=38.87 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
+.|.++.... ++..+++.....|++-.-.+...+.+..... ...+++...+||++....+.
T Consensus 104 gs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~-------------- 164 (302)
T PF14870_consen 104 GSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVSSR-------------- 164 (302)
T ss_dssp S-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT--------------
T ss_pred CCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEECc--------------
Confidence 5567776655 5677777655557777655555665543322 24566777788875544432
Q ss_pred cCCCceEEE-EeCCCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--cC----CC-
Q 016318 211 AEDTGRVLK-YDPTTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--LP----GY- 281 (391)
Q Consensus 211 ~~~~g~l~~-~d~~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~~----g~- 281 (391)
|.++. .|+-......... ....-..+.+++|+. ||+.. .++.|.+-+.. ...+.+.. .| ++
T Consensus 165 ----G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~----~~~~~w~~~~~~~~~~~~~ 234 (302)
T PF14870_consen 165 ----GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDP----DDGETWSEPIIPIKTNGYG 234 (302)
T ss_dssp ----SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-T----TEEEEE---B-TTSS--S-
T ss_pred ----ccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCC----CCccccccccCCcccCcee
Confidence 55553 4553333444332 234556788999988 88774 55666666511 11233321 11 11
Q ss_pred CCceEeCCCCCEEEEEcCC
Q 016318 282 PDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 282 p~~i~~d~~G~lwva~~~~ 300 (391)
.-+++..+++.+|++..++
T Consensus 235 ~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 235 ILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEEEESSSS-EEEEESTT
T ss_pred eEEEEecCCCCEEEEeCCc
Confidence 1235677778888876554
No 191
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.99 E-value=0.69 Score=43.33 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=103.6
Q ss_pred ccccCcceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 66 NQIQGPESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
|--.|-.++|-+|+- ..+.+|+.||.|..|+..+-..+.. .+...|-..||+++. +..
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--------------------f~AH~G~V~Gi~v~~-~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--------------------FKAHEGLVRGICVTQ-TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--------------------eecccCceeeEEecc-cce
Confidence 444577888888765 4578999999999998862111111 111235678999987 667
Q ss_pred EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
++++|.. -..++++.. -++.+... ....+|.-...++++.|- + ..+-.||..
T Consensus 123 ~tvgdDKtvK~wk~~~~--p~~tilg~------s~~~gIdh~~~~~~FaTc-G------------------e~i~IWD~~ 175 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP--PLHTILGK------SVYLGIDHHRKNSVFATC-G------------------EQIDIWDEQ 175 (433)
T ss_pred EEecCCcceeeeeccCC--cceeeecc------cccccccccccccccccc-C------------------ceeeecccc
Confidence 7887633 124444432 22222110 122333333344444443 1 124445542
Q ss_pred CCe-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 224 TKQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 224 ~~~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
... +..+.-+......+.++|-+..|+.+-...+.|..|++..... -.++..+ --++.|+.++++..+++.....+
T Consensus 176 R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~--mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 176 RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVILT--MRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cceeeee--ccccceecCccccceeecccccc
Confidence 111 1111112222346778888887777766778899998754311 1122222 23678999998888888777665
Q ss_pred hhh
Q 016318 303 LYS 305 (391)
Q Consensus 303 ~~~ 305 (391)
.+.
T Consensus 253 lY~ 255 (433)
T KOG0268|consen 253 LYT 255 (433)
T ss_pred cee
Confidence 544
No 192
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.90 E-value=2.6 Score=41.19 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred CceEEEEeCCCCeEEEeccC--CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCC
Q 016318 214 TGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKG 291 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G 291 (391)
+|.|-.||..+.....-... -....||+++|-+..|+|+-....+|..|+.... +.......+.| -..+++.++|
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~P--lstvaf~~~G 262 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHP--LSTVAFSECG 262 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCC--cceeeecCCc
Confidence 57888888765433222222 2245699999998889998888889999986532 22222222222 2458889999
Q ss_pred CEEEEEcCCCc
Q 016318 292 EFWVAIHCRRS 302 (391)
Q Consensus 292 ~lwva~~~~~~ 302 (391)
.++++......
T Consensus 263 ~~L~aG~s~G~ 273 (673)
T KOG4378|consen 263 TYLCAGNSKGE 273 (673)
T ss_pred eEEEeecCCce
Confidence 88877665443
No 193
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.76 E-value=3.3 Score=38.02 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=54.1
Q ss_pred ceEEEcc-CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 72 ESMAFDP-LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 72 e~i~~d~-~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
.+++|+| ..+++-++++||.|..|+-..-..+... ......+-++.+++..++..++.++.
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceEEeecc
Confidence 4667777 4555568999998888865410001000 12223466789999875556788888
Q ss_pred CCCeEEEeCCCCeeEEceec
Q 016318 151 YFGLMKVGPEGGLATSLATE 170 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~ 170 (391)
.+.+-.+|..+++...+..+
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred CCceEEEEccCCCeeeeeec
Confidence 88899999999988877654
No 194
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.71 E-value=1.2 Score=39.54 Aligned_cols=184 Identities=16% Similarity=0.031 Sum_probs=84.2
Q ss_pred CceeeeecCCCCCCCCCCCccchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCC
Q 016318 33 DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNR 110 (391)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~ 110 (391)
|++-...++|.... .+-+..+..+..| ..+=..|+..|+|. +|.-..+ .+++..+. ...... ....
T Consensus 6 d~~~~~~~~p~~~~-------~n~~~~a~~iG~g-w~~~~~i~~~P~g~-lY~I~~~-~lY~~~~~~~~~~~~~-~~~~- 73 (229)
T PF14517_consen 6 DGTLRKGPPPQDGG-------DNWSDRAITIGSG-WNNFRDIAAGPNGR-LYAIRND-GLYRGSPSSSGGNTWD-SGSK- 73 (229)
T ss_dssp T-EEEEES---STT---------HHHHSEEEESS--TT-SEEEE-TTS--EEEEETT-EEEEES---STT--HH-HH-E-
T ss_pred cccEEecCCCCCCC-------CCccchhhhcCcc-ccccceEEEcCCce-EEEEECC-ceEEecCCccCccccc-ccCc-
Confidence 45555555554322 1234455555443 45667888999998 6655544 78877322 100000 0000
Q ss_pred cccCCCCCCccccccccCc-cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEce----eccCCCcccCCcceeec
Q 016318 111 SELCNPKPIATSYLKNEHI-CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLA----TEAEGVPLRFTNDLDID 185 (391)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~----~~~~~~~~~~~~~l~~d 185 (391)
..... -++=..|.+++ .|-||..+....|++..+.+..-.... +...+..-+....+..+
T Consensus 74 --------------~Ig~g~W~~F~~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~ 138 (229)
T PF14517_consen 74 --------------QIGDGGWNSFKFIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAG 138 (229)
T ss_dssp --------------EEE-S-GGG-SEEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-
T ss_pred --------------ccccCcccceeEEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeC
Confidence 00000 11334788888 899998876555888765433222221 11111122345667889
Q ss_pred CCCCEEEEeCCCcccchhheeeecccCCCceEEEE-eCCCCe-------EEEeccCCCCcceEEEccCCCEEEEEeCCCC
Q 016318 186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY-DPTTKQ-------TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG 257 (391)
Q Consensus 186 ~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~-------~~~~~~~~~~~ngia~~~d~~~l~v~et~~~ 257 (391)
++|.||..+. +|++++. .|.... ..+...+-....-|.++|++. ||.. ..++
T Consensus 139 ~~GvLY~i~~------------------dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G 198 (229)
T PF14517_consen 139 PNGVLYAITP------------------DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNG 198 (229)
T ss_dssp TTS-EEEEET------------------TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETT
T ss_pred CCccEEEEcC------------------CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCC
Confidence 9999999985 3678887 343321 111123333466788999998 6666 4577
Q ss_pred eEEEEE
Q 016318 258 RLHKYW 263 (391)
Q Consensus 258 ~I~~~~ 263 (391)
.|+|+.
T Consensus 199 ~lyr~~ 204 (229)
T PF14517_consen 199 KLYRGR 204 (229)
T ss_dssp EEEEES
T ss_pred EEeccC
Confidence 898885
No 195
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.67 E-value=0.16 Score=37.75 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred cCcceEEEccCCCe---------eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe
Q 016318 69 QGPESMAFDPLGRG---------PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD 139 (391)
Q Consensus 69 ~gPe~i~~d~~G~~---------ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d 139 (391)
.||+++.+..|+.. .|.+...+.|+.+++++++..+. ....|.||.++
T Consensus 6 vG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~-----------------------g~~~aNGI~~s 62 (86)
T PF01731_consen 6 VGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVAS-----------------------GFSFANGIAIS 62 (86)
T ss_pred ECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeec-----------------------cCCCCceEEEc
Confidence 47888877765420 13334457788887765444322 14678999999
Q ss_pred cCCCcEEEEECCCC-eEEEeC
Q 016318 140 KKTGDLYIADAYFG-LMKVGP 159 (391)
Q Consensus 140 ~~~g~L~V~d~~~g-l~~~d~ 159 (391)
+++..|||++...+ |..+..
T Consensus 63 ~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 63 PDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCCEEEEEeccCCeEEEEEe
Confidence 86678999987744 665543
No 196
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.57 E-value=3.4 Score=37.35 Aligned_cols=217 Identities=10% Similarity=0.082 Sum_probs=111.8
Q ss_pred cCccceEEEecCCCcEEEEECC-CCeEEEeCCCC-eeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGG-LATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g-~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~ 207 (391)
.+|...+++++..|+++..... +-|...+..++ ... ..+..++.--+..+.+|..|.|++..+.+-
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~-ck~vld~~hkrsVRsvAwsp~g~~La~aSF----------- 81 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT-CKTVLDDGHKRSVRSVAWSPHGRYLASASF----------- 81 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE-EEEeccccchheeeeeeecCCCcEEEEeec-----------
Confidence 4688899999832665554443 44555555422 222 112223333457889999999995444432
Q ss_pred ecccCCCceEEEEeCCCCeEEEec--c-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC--
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLL--R-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-- 282 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~--~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-- 282 (391)
+..+..|...+++++.+. + .-...-+++++++|++|-.+ +....+|...++.+ .+++..+-+.+.-
T Consensus 82 ------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~ded--dEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 82 ------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC-SRDKSVWIWEIDED--DEFECIAVLQEHTQD 152 (312)
T ss_pred ------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe-eCCCeEEEEEecCC--CcEEEEeeecccccc
Confidence 355666666666666543 2 23456789999999976655 55678888877632 3344433232211
Q ss_pred -CceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCc-cceEEEEECCCCCEEEEEeCCCCC
Q 016318 283 -DNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGR-LHAMAVKYSPEGKILQVLEDSKGK 360 (391)
Q Consensus 283 -~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~v~~~d~~g~~~~~~~~~~g~ 360 (391)
..+..-|.-.++++.....++ ++....+ ...+.....+++. .....+.|++.|..+.+-.+ ++.
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTI------------k~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd-D~t 218 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTI------------KVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD-DGT 218 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeE------------EEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecC-Ccc
Confidence 123333333344443332222 1112222 1111111222222 13456778888887776543 444
Q ss_pred eeece--eEEE-EECCEEEEecCC
Q 016318 361 VVKAI--SEVE-EKDGKLWMGSVL 381 (391)
Q Consensus 361 ~~~~i--s~~~-~~~g~Lylgs~~ 381 (391)
+.-.. +.+. ++.+.+|--...
T Consensus 219 v~Iw~~~~~~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 219 VSIWRLYTDLSGMHSRALYDVPWD 242 (312)
T ss_pred eEeeeeccCcchhcccceEeeeec
Confidence 32222 3332 455677744333
No 197
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.56 E-value=4.7 Score=38.84 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=54.6
Q ss_pred eEEEeCCCCeeEEceeccC--CCcccCCcceee--cC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE---eCCCC
Q 016318 154 LMKVGPEGGLATSLATEAE--GVPLRFTNDLDI--DD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY---DPTTK 225 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~~~--~~~~~~~~~l~~--d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~ 225 (391)
++++|++++.++.+..... ...+.-+++++. ++ +|.+|+.... .+|.+..| +...+
T Consensus 131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g 194 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDG 194 (381)
T ss_dssp EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTS
T ss_pred EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCC
Confidence 8899998887776643211 112345788887 33 5777776532 13444332 22333
Q ss_pred eEE-Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 226 QTT-VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 226 ~~~-~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.+. .+. .....+.|++++....+||++|- +..||+|..+-
T Consensus 195 ~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep 238 (381)
T PF02333_consen 195 KVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEP 238 (381)
T ss_dssp SEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSC
T ss_pred cEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCC
Confidence 221 111 22346789999988888999986 57999998763
No 198
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.51 E-value=3.1 Score=40.92 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=64.2
Q ss_pred EEecCCCcEEEEECCCC---eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccC
Q 016318 137 RFDKKTGDLYIADAYFG---LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~~g---l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
+|.+++..|.++....| |+.+|..++....+... .+. . ..=...+|| .|+|+....
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi--~--~~Ps~spdG~~ivf~Sdr~--------------- 303 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGI--N--TSPSWSPDGSKIVFTSDRG--------------- 303 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Ccc--c--cCccCCCCCCEEEEEeCCC---------------
Confidence 56664444555544433 99999988775554321 111 0 123456788 466665331
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe--EEEEEe
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR--LHKYWL 264 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~--I~~~~~ 264 (391)
+.-.|+++++++++.+.+.........-.++|||+++.+.....+. |..+++
T Consensus 304 G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 304 GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 1237999999998887776555444456789999987776533333 555544
No 199
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.48 E-value=6.3 Score=40.00 Aligned_cols=185 Identities=15% Similarity=0.067 Sum_probs=103.3
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
..-|+++..+.|+ ++....+|.|..||......... .+...+..+.|+..+.+..+-|+
T Consensus 70 rsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~--------------------~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 70 RSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYN--------------------IDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred CceeeEEEccCCe-EEeecCCceEEEEecccCceeEE--------------------ecCCCcceeEEEeCCccceEEee
Confidence 3557888886666 99999999999998863332221 22235667788888866667887
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
....-++-++...++++.... .. .+-...-.+..+++|.=.++.+. +|.+-.+|..+++.-
T Consensus 129 cddGvl~~~s~~p~~I~~~r~-l~-rq~sRvLslsw~~~~~~i~~Gs~-----------------Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKITYKRS-LM-RQKSRVLSLSWNPTGTKIAGGSI-----------------DGVIRIWDVKSGQTL 189 (691)
T ss_pred cCCceEEEEecCCceEEEEee-cc-cccceEEEEEecCCccEEEeccc-----------------CceEEEEEcCCCceE
Confidence 433346666666666554321 11 11223456677788863444433 466888998777553
Q ss_pred Ee----ccCCC-----CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC-EEEEE
Q 016318 229 VL----LRNLQ-----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE-FWVAI 297 (391)
Q Consensus 229 ~~----~~~~~-----~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~-lwva~ 297 (391)
.+ .+++. -..++.+-.|+. | ++....+.|..++.+-. ...+.+....+-.-.++++.+++ ++.|.
T Consensus 190 ~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I-~sgDS~G~V~FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 190 HIITMQLDRLSKREPTIVWSVLFLRDST-I-ASGDSAGTVTFWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred EEeeecccccccCCceEEEEEEEeecCc-E-EEecCCceEEEEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 32 12222 234666666775 4 44444566666653221 11222222222234567776655 55543
No 200
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=3.5 Score=38.12 Aligned_cols=240 Identities=17% Similarity=0.197 Sum_probs=121.7
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCCCcEEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKTGDLYIAD 149 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~g~L~V~d 149 (391)
.+++.|.+.|..+-+|..||+|+.||-..+. ++. .... .-+| ..+++++ +|+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar-------------------~lsa-H~~pi~sl~WS~-dgr~Llts 83 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR-------------------MLSA-HVRPITSLCWSR-DGRKLLTS 83 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh-------------------hhhc-cccceeEEEecC-CCCEeeee
Confidence 7899999999989999999999999876221 110 0001 2233 4788998 66655544
Q ss_pred -CCCCeEEEeCCCCee-EEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 150 -AYFGLMKVGPEGGLA-TSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 150 -~~~gl~~~d~~~g~~-~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
....+-.+|...|.. +.+. ++. -..+.-..+ +-+..++.- ++ ....+..+++ .+
T Consensus 84 S~D~si~lwDl~~gs~l~rir--f~s----pv~~~q~hp~k~n~~va~~-------------~~--~sp~vi~~s~--~~ 140 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIR--FDS----PVWGAQWHPRKRNKCVATI-------------ME--ESPVVIDFSD--PK 140 (405)
T ss_pred cCCceeEEEeccCCCceeEEE--ccC----ccceeeeccccCCeEEEEE-------------ec--CCcEEEEecC--Cc
Confidence 445677778765542 1111 000 001111222 223333321 11 1233444443 22
Q ss_pred EEEec--cC--C-CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc----cCCCCCceEeCCCCCEEEEE
Q 016318 227 TTVLL--RN--L-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI----LPGYPDNVRTNEKGEFWVAI 297 (391)
Q Consensus 227 ~~~~~--~~--~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~----~~g~p~~i~~d~~G~lwva~ 297 (391)
-+.+. +. + ..+....+++.|+++|.. +.++.+..|+... .+..+. .-.....|.+...|.+++-.
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-tsKGkllv~~a~t-----~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITG-TSKGKLLVYDAET-----LECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEe-cCcceEEEEecch-----heeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 22221 11 1 123334688899977766 7788999997543 232221 11134567888888877766
Q ss_pred cCCCchhhhhhhc---Cccceeee--eec------------CccceeeeEEeecCccceEEEEECCCCCEEEEEeCCCCC
Q 016318 298 HCRRSLYSHLMAL---YPKIRHFL--LKL------------PISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLEDSKGK 360 (391)
Q Consensus 298 ~~~~~~~~~~l~~---~~~~~~~~--~~l------------~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~~~g~ 360 (391)
...|....+.+.. ....+.+- .++ -......+.+......|.+.+.=..-|+++.++|...|+
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE 294 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE 294 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence 5554432211110 00111100 000 000011122222234456666556778999999988876
Q ss_pred e
Q 016318 361 V 361 (391)
Q Consensus 361 ~ 361 (391)
.
T Consensus 295 ~ 295 (405)
T KOG1273|consen 295 E 295 (405)
T ss_pred h
Confidence 4
No 201
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.46 E-value=5.2 Score=38.97 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=99.5
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
..-.++.|-.||+++-+|...|.|-.+|.+. +.+.. .........+-+.|.+.++.+++.
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR-------------------~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR-------------------QLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH-------------------HHhhccCceeEEEecccCCeEEEe
Confidence 3667888889999777788888887777541 00000 000011223456677756666666
Q ss_pred ECCCCeEE-EeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 149 DAYFGLMK-VGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 149 d~~~gl~~-~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
.....+.+ +|..+..+. . ...+. -.+....++.+ +++|.+|.+. +|.|-.||..+..
T Consensus 129 ~sDd~v~k~~d~s~a~v~-~--~l~~h-tDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQ-A--ELSGH-TDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLT 187 (487)
T ss_pred cCCCceEEEEEcCCcEEE-E--EecCC-cceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCC
Confidence 55555444 455655442 1 11111 12556666655 5678888754 5778788876653
Q ss_pred EEE--eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-cccCccceeecccCCCCCceEeCCCCCEEEEEc
Q 016318 227 TTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIH 298 (391)
Q Consensus 227 ~~~--~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~-g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~ 298 (391)
..+ +..+. ....|.+-|.|. ++++ .+++.+..+++. |.+. -.. +.+..-...+++...+++-+++..
T Consensus 188 ~~v~elnhg~-pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~G~ql-l~~-~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 188 SRVVELNHGC-PVESVLALPSGS-LIAS-AGGNSVKVWDLTTGGQL-LTS-MFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred ceeEEecCCC-ceeeEEEcCCCC-EEEE-cCCCeEEEEEecCCcee-hhh-hhcccceEEEEEeecCCceEeecc
Confidence 332 33332 233455556776 5454 556778888876 3211 001 111111245677777777555433
No 202
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.42 E-value=2 Score=41.97 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=65.3
Q ss_pred eEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccC
Q 016318 135 GLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
-+.+++....|++.-.++| +..+|.++-......... .-....+|++.+... |+++-..
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsVG~---------------- 229 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSVGY---------------- 229 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEecc----------------
Confidence 3456653444555545566 666676643211111111 112357899998664 5555422
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
+.+|+.||...++...-..--..-..++|+++|.+| ++.+.+++|+.|++.+.
T Consensus 230 -Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L-~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 230 -DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYL-CAGNSKGELIAYDMRST 282 (673)
T ss_pred -cceEEEeecccccccceeeecCCcceeeecCCceEE-EeecCCceEEEEecccC
Confidence 468999998755432211111223479999999855 55578899999998874
No 203
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.42 E-value=3.7 Score=37.10 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=77.5
Q ss_pred CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
..+..+.+++ -+..+|+....| |-++|..+|+.-.-..... ....|+|...++..+++|.+.
T Consensus 148 skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h---~~~Ind~q~s~d~T~FiT~s~------------- 210 (327)
T KOG0643|consen 148 SKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEH---SSKINDLQFSRDRTYFITGSK------------- 210 (327)
T ss_pred cceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhh---ccccccccccCCcceEEeccc-------------
Confidence 4455666676 455555544544 8899988874222111111 236899999999999998754
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcccee-e---------cccC
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEA-F---------AILP 279 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~-~---------~~~~ 279 (391)
+-.--.+|-.+-++..-...-..-|..+++|-.+++..... ..-.-++-...+.|++|. | ....
T Consensus 211 ----Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG--qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 211 ----DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG--QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred ----CccceeeeccceeeEEEeeecccccceecccccceEEecCC--ceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 12223344433333222222234577888887776554321 111111111112343321 1 1112
Q ss_pred ---CCCCceEeCCCCCEEEEEcC
Q 016318 280 ---GYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 280 ---g~p~~i~~d~~G~lwva~~~ 299 (391)
|-.+.+++.|+|..|.+-..
T Consensus 285 GHFGPINsvAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKSYSSGGE 307 (327)
T ss_pred ccccCcceeEECCCCcccccCCC
Confidence 33477999999999876544
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.39 E-value=0.96 Score=42.42 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=42.7
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeC----CceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEE
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDG----LKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYI 147 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V 147 (391)
.+++++++|.++-+++..|+|.|+-. +++.+|+... .+-+...++|++ +..++.
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------------~~~~IySL~Fs~-ds~~L~ 234 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------------YPVSIYSLSFSP-DSQFLA 234 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------------eeeEEEEEEECC-CCCeEE
Confidence 47899999999999999999999832 2555565431 145567899998 666666
Q ss_pred EECCCC
Q 016318 148 ADAYFG 153 (391)
Q Consensus 148 ~d~~~g 153 (391)
+....+
T Consensus 235 ~sS~Te 240 (391)
T KOG2110|consen 235 ASSNTE 240 (391)
T ss_pred EecCCC
Confidence 655543
No 205
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.39 E-value=1.5 Score=41.85 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=68.7
Q ss_pred cCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCC-cccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
+|+...+....++..|..+....-+-.+|..+..+....+. ++. -..-.+.+.+.|+|.+..+.+.
T Consensus 341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~------------ 407 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSA------------ 407 (459)
T ss_pred CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECCCCceeeeccC------------
Confidence 45666677666344566665455688888887766654432 111 1123566788888876666544
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCCC---CcceEEEccCCCEEEEEe
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNLQ---FPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngia~~~d~~~l~v~e 253 (391)
+|.|+.|+..+++++....... ..+.+++++-|..+.-++
T Consensus 408 -----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 408 -----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred -----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 7899999999999887654432 245677888887665543
No 206
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=94.27 E-value=1.6 Score=38.87 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=58.2
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcc-cCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPL-RFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~-~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~ 208 (391)
.+-.||.+-+.+|+||-......||.+|+.+|..+.+....-...+ ....++++.| -.+|-+..+
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~------------- 93 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN------------- 93 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-------------
Confidence 4567999988889999987777899999999987766311111111 1245666666 356766653
Q ss_pred cccCCCceEEEEeCCCCeEEEeccCC
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLLRNL 234 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~~~~ 234 (391)
+|.=+|+++++|.+......+
T Consensus 94 -----~GqNlR~npdtGav~~~Dg~L 114 (236)
T PF14339_consen 94 -----TGQNLRLNPDTGAVTIVDGNL 114 (236)
T ss_pred -----CCcEEEECCCCCCceeccCcc
Confidence 478899999999854443333
No 207
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.21 E-value=1.5 Score=46.44 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=86.8
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCC---CcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNN---RSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
-.++.+.+||..++.|+.|.-|..|.... -..+...+.. ....| .. ......+....+++++ ++.
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-------~~-~l~~H~~DV~Dv~Wsp-~~~ 142 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-------VS-ILRGHDSDVLDVNWSP-DDS 142 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-------EE-EEecCCCccceeccCC-Ccc
Confidence 34556999999888999887766665431 1111100000 00000 00 1111235567788888 777
Q ss_pred EEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 145 LYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
+.|.-.. +-|..+|..+.+.......+ ...+-++.+||-|..+.+.+. +..|..|...
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~ 201 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGH----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTS 201 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecc----cccccceEECCccCeeeeecC-----------------CceEEEEEcc
Confidence 7777655 45888888765322222222 246889999999997777643 4456666643
Q ss_pred CCeEEE-eccCCC------CcceEEEccCCCEEEEEeCCC
Q 016318 224 TKQTTV-LLRNLQ------FPNGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 224 ~~~~~~-~~~~~~------~~ngia~~~d~~~l~v~et~~ 256 (391)
+=++.. +...+. +-.-+.++|||++|-....-+
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 322222 222211 223467899999776654433
No 208
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.18 E-value=4.5 Score=39.48 Aligned_cols=110 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeE--EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT--SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~--~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
+..++.++. ++.+|++....++++-+.++...+ .+...........+.++.+.+++++|++...
T Consensus 282 ~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------- 347 (398)
T PLN00033 282 RIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------- 347 (398)
T ss_pred ceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence 345777776 789999876666666544432111 1211110111134677888889999998743
Q ss_pred ccCCCceEEEEeCCCCeEEEec--cCCC-CcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLL--RNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKY 262 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~--~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~ 262 (391)
|.+++-....+..+... .... .-..|.+.++++ .|+. ..++.|.|+
T Consensus 348 -----G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 348 -----GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred -----CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 55555544333333332 1221 123677666666 6665 345677776
No 209
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.01 E-value=6.3 Score=38.20 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=57.8
Q ss_pred cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecc
Q 016318 133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
..+|.|.+.+..-+++.++.| |-..|.+++..+.+.+.... -....++.+.. ++.+++.+.-
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~-------------- 300 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV-------------- 300 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeecc--------------
Confidence 457888874444444445666 66667777766655433111 12344555543 5577777632
Q ss_pred cCCCceEEEEeCCCCeEEEec--cCCCCcceEEEccCCCEEEEEeCCCC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLL--RNLQFPNGLSLSKDKSFFVFCEGSVG 257 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~--~~~~~~ngia~~~d~~~l~v~et~~~ 257 (391)
|-+-.+|..++..+... -.-...++|++.|-..+++.+....+
T Consensus 301 ----G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 301 ----GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred ----cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 44445665554432221 11126789999998886665544333
No 210
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.99 E-value=6.6 Score=38.32 Aligned_cols=98 Identities=14% Similarity=0.011 Sum_probs=51.9
Q ss_pred ceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe-EEEec-cCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318 181 DLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ-TTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 181 ~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
.+...++|.+++.... |.+++-....+. ...+. .......++++.+|+. +|++ +..+.
T Consensus 243 ~v~~~~dG~~~~vg~~------------------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~-g~~G~ 302 (398)
T PLN00033 243 TVNRSPDGDYVAVSSR------------------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLL-TRGGG 302 (398)
T ss_pred eEEEcCCCCEEEEECC------------------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEE-eCCce
Confidence 3455667776666532 566665444333 23332 2223456788888988 5555 34566
Q ss_pred EEEEEeccccCccceeecccC----C-CCCceEeCCCCCEEEEEcC
Q 016318 259 LHKYWLIGEKAGNLEAFAILP----G-YPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 259 I~~~~~~g~~~g~~~~~~~~~----g-~p~~i~~d~~G~lwva~~~ 299 (391)
+.+-.-.|.. .+...|...+ + ...++....++++|++-..
T Consensus 303 l~~S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 303 LYVSKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred EEEecCCCCc-ccccceeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence 7766433321 1111232211 1 1345677788888887655
No 211
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.98 E-value=6.6 Score=38.30 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=83.2
Q ss_pred cceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeeccc
Q 016318 133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
..+..+.+.++.+.+...|.| |-.+|..... .....-..|. ....+..-+.|.+.++..+
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~---pVe~vl~lpsgs~iasAgG--------------- 216 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGC---PVESVLALPSGSLIASAGG--------------- 216 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCC---ceeeEEEcCCCCEEEEcCC---------------
Confidence 444566664667888878877 5555655432 1121212222 3567778888888887754
Q ss_pred CCCceEEEEeCCCCe-EEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCCCceEe
Q 016318 212 EDTGRVLKYDPTTKQ-TTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRT 287 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~-~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~ 287 (391)
..+-.||..+|. ...... ....-..+++..+++.|+- ..-.+++..|+.. +.++.. ..||-.-+|++
T Consensus 217 ---n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS-~sLD~~VKVfd~t-----~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 217 ---NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS-GSLDRHVKVFDTT-----NYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred ---CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee-cccccceEEEEcc-----ceEEEEeeecccceeeEEe
Confidence 356678876443 322222 2234567888888876654 4667788888733 233332 34554556788
Q ss_pred CCCCC-EEEEEcCC
Q 016318 288 NEKGE-FWVAIHCR 300 (391)
Q Consensus 288 d~~G~-lwva~~~~ 300 (391)
++++. +.+++.++
T Consensus 288 s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNG 301 (487)
T ss_pred cCCCceEEEecccc
Confidence 77665 77777664
No 212
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.93 E-value=2.5 Score=40.33 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=99.9
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
|..-+-.++.+|++++...+.+.|+....|+-+........+... .....+.|.. ++.
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt--------------------dkVt~ak~~~--~~~ 274 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT--------------------DKVTAAKFKL--SHS 274 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc--------------------cceeeehhhc--ccc
Confidence 333445788999999988888889877777666222221111111 1111222221 111
Q ss_pred -EEEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 146 -YIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 146 -~V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
.|.-. ..-+-..|........ +. .+....|+|+.. +...+++. -++.|-.||..
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~C~k--t~---l~~S~cnDI~~~--~~~~~SgH-----------------~DkkvRfwD~R 330 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAYCSK--TV---LPGSQCNDIVCS--ISDVISGH-----------------FDKKVRFWDIR 330 (459)
T ss_pred ceeeccccchhhhhhhhhhheec--cc---cccccccceEec--ceeeeecc-----------------cccceEEEecc
Confidence 22111 1112222322211110 11 123467777765 33444442 24667778866
Q ss_pred CCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC-----CceEeCCCCCEEEEEc
Q 016318 224 TKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP-----DNVRTNEKGEFWVAIH 298 (391)
Q Consensus 224 ~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p-----~~i~~d~~G~lwva~~ 298 (391)
+.....-.+.......+.++.++..|..+ +..+.+..+++.+. .-...|. -+|+- .-+.++|+|.+..|..
T Consensus 331 s~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~--eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 331 SADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK--EIRQTFS-AEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred CCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc--cEEEEee-ccccccccccceeEECCCCceeeecc
Confidence 55544444444466788899999888777 66777888876542 1122222 12221 2367888888776666
Q ss_pred CCCchhhh
Q 016318 299 CRRSLYSH 306 (391)
Q Consensus 299 ~~~~~~~~ 306 (391)
..+++++|
T Consensus 407 ~dgsv~iW 414 (459)
T KOG0288|consen 407 ADGSVYIW 414 (459)
T ss_pred CCCcEEEE
Confidence 66666554
No 213
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.93 E-value=8.2 Score=39.23 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccC-ccceEEEecCCCcEEEEECCCCeEEE
Q 016318 79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICG-RPLGLRFDKKTGDLYIADAYFGLMKV 157 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~P~gi~~d~~~g~L~V~d~~~gl~~~ 157 (391)
+| .+|+++.++.|+.+|...-+..-.......... .....|. ...++++. ++++|+++....|+.+
T Consensus 69 ~g-~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~----------~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~AL 135 (527)
T TIGR03075 69 DG-VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDV----------IPVMCCDVVNRGVALY--DGKVFFGTLDARLVAL 135 (527)
T ss_pred CC-EEEEECCCCcEEEEECCCCceeeEecCCCCccc----------ccccccccccccceEE--CCEEEEEcCCCEEEEE
Confidence 45 499999999999999762111111100000000 0000010 11345554 5789999877779999
Q ss_pred eCCCCeeEEceeccCCCc--ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 158 GPEGGLATSLATEAEGVP--LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 158 d~~~g~~~~~~~~~~~~~--~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
|.++|++.=-.. ..... ......-.+. +|.||+..++..+ ...|.|+.+|.+||+..
T Consensus 136 Da~TGk~~W~~~-~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 136 DAKTGKVVWSKK-NGDYKAGYTITAAPLVV-KGKVITGISGGEF------------GVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ECCCCCEEeecc-cccccccccccCCcEEE-CCEEEEeeccccc------------CCCcEEEEEECCCCcee
Confidence 999986432111 11100 0011111222 5688887654211 23578889999888754
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.83 E-value=5.5 Score=36.87 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=52.9
Q ss_pred CcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE-EeCCCCeEEE-eccCCCC--cceEEEccCCCEEEEEeC
Q 016318 179 TNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK-YDPTTKQTTV-LLRNLQF--PNGLSLSKDKSFFVFCEG 254 (391)
Q Consensus 179 ~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~-~d~~~~~~~~-~~~~~~~--~ngia~~~d~~~l~v~et 254 (391)
..-++...+|.+..|.+. .|.|+| ||..+|+... +..+... -..|+++||..+|.++ +
T Consensus 184 Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-S 245 (346)
T KOG2111|consen 184 IACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS-S 245 (346)
T ss_pred eeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-c
Confidence 455677889998887754 588887 7888876543 4444433 3589999999988777 6
Q ss_pred CCCeEEEEEecccc
Q 016318 255 SVGRLHKYWLIGEK 268 (391)
Q Consensus 255 ~~~~I~~~~~~g~~ 268 (391)
.++.|+.+.+.+..
T Consensus 246 dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 246 DKGTLHIFSLRDTE 259 (346)
T ss_pred CCCeEEEEEeecCC
Confidence 78899999887643
No 215
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.80 E-value=7.2 Score=38.11 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred eEEEecCCCc-EEEE-ECCCC----eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCC-EEEEeCCCcccchhheee
Q 016318 135 GLRFDKKTGD-LYIA-DAYFG----LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 135 gi~~d~~~g~-L~V~-d~~~g----l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~ 207 (391)
++.+++ +|+ +.++ +..+. |+.+|.++|+.. ...+... ....+...++|+ +|.+...... +..
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~-~~~---- 196 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENP---KFSSVSWSDDGKGFFYTRFDEDQ-RTS---- 196 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEE---ESEEEEECTTSSEEEEEECSTTT-SS-----
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCc--CCccccc---ccceEEEeCCCCEEEEEEeCccc-ccc----
Confidence 466777 454 4333 33322 888899988432 2221111 122377777765 4444322100 000
Q ss_pred ecccCCCceEEEEeCCCCeEE--EeccCCC--C-cceEEEccCCCEEEEEeCCC---CeEEEEEecc
Q 016318 208 VFSAEDTGRVLKYDPTTKQTT--VLLRNLQ--F-PNGLSLSKDKSFFVFCEGSV---GRLHKYWLIG 266 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~--~~~~~~~--~-~ngia~~~d~~~l~v~et~~---~~I~~~~~~g 266 (391)
+..-...|+++...+.+.+ .+.+... + --++..++|++++++....+ ..++.+++..
T Consensus 197 --~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 197 --DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp --CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred --cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 0011346888887666433 4433322 2 34788999999988764433 4577777654
No 216
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.79 E-value=0.29 Score=30.99 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=28.9
Q ss_pred CCEEEEeCCCcccchhheeeecccCCCc-eEEEEeCCCCeEEE-eccCCCCcceEEEcc
Q 016318 188 GNVYFTDSSTNYQRRNFMQLVFSAEDTG-RVLKYDPTTKQTTV-LLRNLQFPNGLSLSK 244 (391)
Q Consensus 188 G~ly~td~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~~~-~~~~~~~~ngia~~~ 244 (391)
|+||++|.+. . .+.+-+.++...++ +.+.+..|+|||+++
T Consensus 1 ~~iYWtD~~~-----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQ-----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTT-----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCC-----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 5799999762 3 67777766555444 457789999999874
No 217
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.79 E-value=1.2 Score=42.43 Aligned_cols=178 Identities=17% Similarity=0.261 Sum_probs=102.5
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
-.+...++|+.|.+|+..|..--|+.. .++.+ .+....-..+|.++. +++-.|..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti----------------------lQaHDs~Vr~m~ws~-~g~wmiSg 156 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI----------------------LQAHDSPVRTMKWSH-NGTWMISG 156 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHH----------------------hhhhcccceeEEEcc-CCCEEEEc
Confidence 356678899999999999988888774 11111 011123345788886 55544443
Q ss_pred CCCCeE-EEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eE
Q 016318 150 AYFGLM-KVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QT 227 (391)
Q Consensus 150 ~~~gl~-~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~ 227 (391)
...|.. .+++.=..++.+.... -....++++.++...+++-+. +|++..+|..-. +-
T Consensus 157 D~gG~iKyWqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEE 215 (464)
T ss_pred CCCceEEecccchhhhHHhhHhh----hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchh
Confidence 334433 3444433333322211 135788999998888887643 678888876433 33
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC---CCCCceEeCCCCCEEEEEcC
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP---GYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~---g~p~~i~~d~~G~lwva~~~ 299 (391)
+++......+..++++|... ++++-...+ +.++| .++.|+ -+..+- ...-.+.+.++|+++.+...
T Consensus 216 ~vL~GHgwdVksvdWHP~kg-LiasgskDn-lVKlW--DprSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 216 RVLRGHGWDVKSVDWHPTKG-LIASGSKDN-LVKLW--DPRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred heeccCCCCcceeccCCccc-eeEEccCCc-eeEee--cCCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 45544456788999999887 555544444 66665 122222 122221 22345677888876665443
No 218
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.78 E-value=5.1 Score=41.13 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=64.1
Q ss_pred ceEEEecCCCcEEEEECCCC------eEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeCCCcccchhhee
Q 016318 134 LGLRFDKKTGDLYIADAYFG------LMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~g------l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~~ 206 (391)
+|++.- +|.||+.....| +-++|+.+.+.+....... .-.+.++ .-+|.||+.......
T Consensus 374 ~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~GG~~~~------- 439 (571)
T KOG4441|consen 374 FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYIIGGGDGS------- 439 (571)
T ss_pred ceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEEcCcCCC-------
Confidence 455554 688998754332 8899999988776643211 1122232 338899998632100
Q ss_pred eecccCCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCC-----CeEEEEEec
Q 016318 207 LVFSAEDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSV-----GRLHKYWLI 265 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~-----~~I~~~~~~ 265 (391)
...-..+.+|||.+++.+....-. ..-.|++.- ++ .||+.-... ..+.+|+..
T Consensus 440 ----~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 440 ----SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred ----ccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCC
Confidence 001257899999999987764321 223355543 34 388774322 236667633
No 219
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=93.77 E-value=4.4 Score=35.61 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=46.9
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~ 255 (391)
.....+++||.|++.++... +..-..||..+++..+-. ..-.....+.++|.-.+++-+ +.
T Consensus 232 savaav~vdpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~-sy 293 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC-SY 293 (350)
T ss_pred ceeEEEEECCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe-cc
Confidence 44567788999998887522 223445555555433221 222344567888877766554 67
Q ss_pred CCeEEEEEeccccCc
Q 016318 256 VGRLHKYWLIGEKAG 270 (391)
Q Consensus 256 ~~~I~~~~~~g~~~g 270 (391)
.+.|..-++.|+-+.
T Consensus 294 d~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAH 308 (350)
T ss_pred cceEEEeecccchhh
Confidence 788988888886433
No 220
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=93.73 E-value=2 Score=40.87 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=72.3
Q ss_pred ccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318 132 RPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
....|.|.. +|.++++... +.|-.+|+.++++..-.....|. .+.-..+-.+|.+.-|..+ +..
T Consensus 175 ~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~g~i~tTGfs-r~s---------- 239 (472)
T KOG0303|consen 175 MVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLASGKIFTTGFS-RMS---------- 239 (472)
T ss_pred eEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEeccCceeeeccc-ccc----------
Confidence 346788887 7888887765 56999999998765443333443 3444555667775544433 221
Q ss_pred cCCCceEEEEeCCCCeEEEeccCCCCcceEE---EccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 211 AEDTGRVLKYDPTTKQTTVLLRNLQFPNGLS---LSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia---~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
...+-.+|+.+-+.-.....+...|||- .++|.+.+|++.-+.+.|.-|.+..+
T Consensus 240 ---eRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 240 ---ERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ---ccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 1233445554433222233344555654 57899999999887788888877654
No 221
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.68 E-value=6.3 Score=37.11 Aligned_cols=80 Identities=18% Similarity=0.322 Sum_probs=50.7
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
+...-|-+...|.+.++.+|+.||.++.|..+. .+.+. +.+ ..|+ || .|.+++.
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~--Gh~--~~ct--------------~G-----~f~pdGK 203 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS--GHN--SPCT--------------CG-----EFIPDGK 203 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec--CCC--CCcc--------------cc-----cccCCCc
Confidence 455667788899999999999999999997652 22221 111 1122 33 3555445
Q ss_pred cEEEEECCCCeEEEeCCCCeeEEcee
Q 016318 144 DLYIADAYFGLMKVGPEGGLATSLAT 169 (391)
Q Consensus 144 ~L~V~d~~~gl~~~d~~~g~~~~~~~ 169 (391)
++..+....-|.++|+.+++...-.+
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEec
Confidence 56666544448899999996544333
No 222
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=93.67 E-value=2.5 Score=39.90 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=107.5
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeC--CceeEEEeecCCCcc--cCCCCCCcc-ccccccCccCccceEEEec
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDG--LKWTDFAFTSNNRSE--LCNPKPIAT-SYLKNEHICGRPLGLRFDK 140 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~g~P~gi~~d~ 140 (391)
|--..-++|.++++|..+..+++|..|-.|+. +...++-..+..+.. ..+..+... +....+..-.-...+.+++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 44457789999999998899999998888872 111111111100000 001001100 0011111112234667776
Q ss_pred CCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 141 KTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 141 ~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
.+.+|-+.+..-|-+.|..++....-.. . ....+.+...+..++.++.++ +..+..|
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~--~---~ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~ 327 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLT--T---NKSLNCISYSPLSKLLASGSS-----------------DRHIRLW 327 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeee--c---CcceeEeecccccceeeecCC-----------------CCceeec
Confidence 6788888888889999998875432111 1 124677777887788888765 2346679
Q ss_pred eCCCCeEEEeccCC----CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 221 DPTTKQTTVLLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 221 d~~~~~~~~~~~~~----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
||.++.-.++...+ ....++-.+|-+.+.+++.+..+.+...+...
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 99888655543322 35567889999888999988777777776543
No 223
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=93.63 E-value=2.4 Score=39.63 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=28.8
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
...|+|..+++|++.++... ...|+++|+++|++.-..
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEe
Confidence 45688999999998887632 457999998888775544
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=4 Score=40.51 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=69.6
Q ss_pred ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEE-eCCCCeEEEEEeccccCccceeecccCCCCCc-eEeCCCCC
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFC-EGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN-VRTNEKGE 292 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~-et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~-i~~d~~G~ 292 (391)
-.|+.++.++....+-...-.....+.++++++-..|. .---..+..|++++ .+..+++-.|+| +..++.|+
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGN 324 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCC
Confidence 35777777644444444444455688999998644444 33346788888776 344455555766 78899999
Q ss_pred E-EEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318 293 F-WVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED 356 (391)
Q Consensus 293 l-wva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~ 356 (391)
+ .+|..++..--.++... ..+|.+.++... ...++...|+|+.+.+-..
T Consensus 325 ii~lAGFGNL~G~mEvwDv--~n~K~i~~~~a~-------------~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDV--PNRKLIAKFKAA-------------NTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred EEEEeecCCCCCceEEEec--cchhhccccccC-------------CceEEEEcCCCcEEEEEec
Confidence 4 45544432211111111 125555554432 2457777888887765433
No 225
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=5.9 Score=36.47 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=66.9
Q ss_pred ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318 134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
..+.+. ++..|++|+..||..+|..+....++....+- -...+++.+..+ ..|+++-
T Consensus 90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn-~aYVadl------------------ 146 (370)
T COG5276 90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGN-YAYVADL------------------ 146 (370)
T ss_pred heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCC-EEEEeec------------------
Confidence 455664 57899999999999999876432222111100 013344444322 5888883
Q ss_pred CceEEEEeCCCCeEEEeccCCCCcc----eEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318 214 TGRVLKYDPTTKQTTVLLRNLQFPN----GLSLSKDKSFFVFCEGSVGRLHKYWLIGEK 268 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~~~~n----gia~~~d~~~l~v~et~~~~I~~~~~~g~~ 268 (391)
+.+++.+|..+-+.-++......|. .++++ |++-|++ ..++.+...++..+.
T Consensus 147 ddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA-~~d~GL~ivDVSnp~ 202 (370)
T COG5276 147 DDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVA-WRDGGLTIVDVSNPH 202 (370)
T ss_pred cCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEE-EeCCCeEEEEccCCC
Confidence 2478888877665555554444443 46665 6678888 456789999987753
No 226
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.53 E-value=6.5 Score=38.38 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=35.4
Q ss_pred CcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc--ceeec---------------ccCCCCCceEeCCCCC-EEEEE
Q 016318 236 FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN--LEAFA---------------ILPGYPDNVRTNEKGE-FWVAI 297 (391)
Q Consensus 236 ~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~--~~~~~---------------~~~g~p~~i~~d~~G~-lwva~ 297 (391)
.+..|.+|-|.++|||+....+.|+.|++..+..-+ .+++. .+.|.|.=+..+-||+ +|+++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 457788999999999999999999999999763321 11111 1345677788899998 88875
Q ss_pred c
Q 016318 298 H 298 (391)
Q Consensus 298 ~ 298 (391)
.
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 227
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.45 E-value=11 Score=38.97 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=42.1
Q ss_pred CCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEE---EeCCCCeEEE-----eccCCCC-cceEEEccCCC
Q 016318 178 FTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLK---YDPTTKQTTV-----LLRNLQF-PNGLSLSKDKS 247 (391)
Q Consensus 178 ~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~~~~~~~-----~~~~~~~-~ngia~~~d~~ 247 (391)
.+..+...+||. +.+... |+|+. .....|+.+. +...+.. +..+.+..+++
T Consensus 449 ~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~ 509 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS 509 (591)
T ss_pred CcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence 477888899984 555442 23332 2233344222 3334443 47788888888
Q ss_pred EEEEEeC-CCCeEEEEEecccc
Q 016318 248 FFVFCEG-SVGRLHKYWLIGEK 268 (391)
Q Consensus 248 ~l~v~et-~~~~I~~~~~~g~~ 268 (391)
|++... ....++++.++|..
T Consensus 510 -L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 510 -LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred -EEEEecCCCCceEEEecCCcc
Confidence 556544 34569999999863
No 228
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.40 E-value=1.5 Score=43.19 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=50.9
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVG--RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK 290 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~--~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~ 290 (391)
++-.|+.+|..+++...+.........-.++|||+.++++....+ +|++++.+|... +.+....+...+-..+++
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCC
Confidence 344689999988887665544433335568999999888855443 689998877432 222211122224456777
Q ss_pred CCEEEEEc
Q 016318 291 GEFWVAIH 298 (391)
Q Consensus 291 G~lwva~~ 298 (391)
|...+-..
T Consensus 337 G~~i~~~~ 344 (425)
T COG0823 337 GDKIVFES 344 (425)
T ss_pred CCEEEEEe
Confidence 87555433
No 229
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.40 E-value=8.1 Score=37.47 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=67.1
Q ss_pred ccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEE-ceec-----cCCCcccCC--------cceeecCCCCEEEEeCCC
Q 016318 132 RPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATS-LATE-----AEGVPLRFT--------NDLDIDDEGNVYFTDSST 197 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~-~~~~-----~~~~~~~~~--------~~l~~d~~G~ly~td~~~ 197 (391)
.+.++++.+++...|=++....|.+.+..+|+... +... ..+.++..+ -.+++.+||...++...
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~- 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR- 222 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC-
Confidence 36688888855566666544559999888776432 2111 022222222 24788889887666522
Q ss_pred cccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 198 NYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 198 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+..+..|+..+.+-.....+.. ...+++|-..-+-+|.+. ....|..+.++
T Consensus 223 ----------------d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-~Drsvkvw~~~ 274 (479)
T KOG0299|consen 223 ----------------DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-ADRSVKVWSID 274 (479)
T ss_pred ----------------CceEEEecCcccchhhcccccccceeeeeeecCccceeeee-cCCceEEEehh
Confidence 3356688888876544433322 345677765544477763 44556665543
No 230
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=93.32 E-value=7.8 Score=37.04 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=59.5
Q ss_pred CccceEEEecCCCcEEEEECCCC-eEEEeCC--------C-----CeeEEceeccCCCcccCCcceeecCCCCEEEEeCC
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPE--------G-----GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSS 196 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~--------~-----g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~ 196 (391)
....+++|++ +|+|.......| ++..-.. + .+......... ....-+++++-.++++..++.+.
T Consensus 66 ~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 66 RAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred ceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeec
Confidence 3467889998 788887755555 3332211 2 00000000001 11234677777888877666543
Q ss_pred CcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCE
Q 016318 197 TNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSF 248 (391)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~ 248 (391)
+..++.||...|+..... +.-.+++|++++|-+++
T Consensus 144 -----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 144 -----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred -----------------cceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 457788888888876654 44568999999987763
No 231
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=9.6 Score=37.93 Aligned_cols=231 Identities=14% Similarity=0.137 Sum_probs=117.5
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
....++..+++|+.|-+|+.+|.+..||.......... ......|.-.++.. ..++.+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~-------------------~~~h~~rvg~laW~---~~~lss 275 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL-------------------RGSHASRVGSLAWN---SSVLSS 275 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-------------------cCCcCceeEEEecc---CceEEE
Confidence 56778889999999999999999999987622211111 00012333344442 334333
Q ss_pred ECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
-.. .-|...|....+ .+.....+ .-....++...+||+...+.. .++++..||..+.+.
T Consensus 276 Gsr~~~I~~~dvR~~~--~~~~~~~~-H~qeVCgLkws~d~~~lASGg-----------------nDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQ--HVVSTLQG-HRQEVCGLKWSPDGNQLASGG-----------------NDNVVFIWDGLSPEP 335 (484)
T ss_pred ecCCCcEEEEEEecch--hhhhhhhc-ccceeeeeEECCCCCeeccCC-----------------CccceEeccCCCccc
Confidence 333 337777665432 11110010 112467888888887655542 256788888744333
Q ss_pred EE-eccCCCCcceEEEccCCCEEEEEe-CCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcCCCchhh
Q 016318 228 TV-LLRNLQFPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYS 305 (391)
Q Consensus 228 ~~-~~~~~~~~ngia~~~d~~~l~v~e-t~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~ 305 (391)
.. +.+.....-.++++|-..-|+.+. ....+.+++|-.- .+...--.+--+..-++...+..+=.+++++-
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----- 408 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN--TGARIDSVDTGSQVCSLIWSKKYKELLSTHGY----- 408 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC--CCcEecccccCCceeeEEEcCCCCEEEEecCC-----
Confidence 22 222233445678888655455443 2345666666211 12111111112345667777777655655542
Q ss_pred hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEECCCCCEEEEEeC
Q 016318 306 HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYSPEGKILQVLED 356 (391)
Q Consensus 306 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~~ 356 (391)
+...-.+.+.|.... .....+...+.+-+..+|+|+.+.+-..
T Consensus 409 ------s~n~i~lw~~ps~~~--~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 409 ------SENQITLWKYPSMKL--VAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred ------CCCcEEEEeccccce--eeeecCCcceeEEEEECCCCCEEEEecc
Confidence 122222333322110 0011222444566677889887776543
No 232
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.93 Score=48.33 Aligned_cols=211 Identities=16% Similarity=0.181 Sum_probs=106.3
Q ss_pred eeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCC
Q 016318 82 GPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPE 160 (391)
Q Consensus 82 ~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~ 160 (391)
+|..|..||.|..|++..+ +.... ..... ......|..+|+.|.+..++|..+.+..| |+..|..
T Consensus 82 lIaGG~edG~I~ly~p~~~--~~~~~---~~~la---------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASI--IANAS---EEVLA---------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeccccCCceEEecchhh--ccCcc---hHHHh---------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 3677889999999988732 11000 00000 01112477889999986666777766666 9988876
Q ss_pred CCeeEEceeccCCCcccCCcceeecC-C---CCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCC--
Q 016318 161 GGLATSLATEAEGVPLRFTNDLDIDD-E---GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL-- 234 (391)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~l~~d~-~---G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-- 234 (391)
.-+ +.+. .+ ....+.+|..-. + -+|+. .+..+|+...+|.+.++...-....
T Consensus 148 n~~-tP~~---~~-~~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 148 KPE-TPFT---PG-SQAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CcC-CCCC---CC-CCCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCC
Confidence 421 1111 01 112333332211 1 12222 3345789999998765332222221
Q ss_pred -CCcceEEEccCCCEEEEEeCCCCe---EEEEEeccccCccceeecc-cCCCCCceEeCCCC-CEEEEEcCCCchhhhhh
Q 016318 235 -QFPNGLSLSKDKSFFVFCEGSVGR---LHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKG-EFWVAIHCRRSLYSHLM 308 (391)
Q Consensus 235 -~~~ngia~~~d~~~l~v~et~~~~---I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~l 308 (391)
..-++++++||...-.+..+...+ |...++.-. ..-.+++.. ..| .-.+.....+ ++.++.....+++.
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~--- 280 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRG-ILSLSWCPQDPRLLLSSGKDNRIIC--- 280 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccc-eeeeccCCCCchhhhcccCCCCeeE---
Confidence 235689999997653333343332 333333211 111222211 111 2223333444 45555555444322
Q ss_pred hcCccceeeeeecCccceeeeEEeec
Q 016318 309 ALYPKIRHFLLKLPISAKTHYLIHVG 334 (391)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (391)
-++..++.+..+|....+.+.+.+.
T Consensus 281 -wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 281 -WNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred -ecCCCceEeeecCCCCcceeeeeec
Confidence 3666788888888866665555444
No 233
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.92 E-value=7 Score=35.43 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=92.4
Q ss_pred cceEEEccC-CCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 71 PESMAFDPL-GRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 71 Pe~i~~d~~-G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
--+++..|- |.+++++..+..|..++.. .+.-...... ...-....+++.| .|++.
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------------------~hkrsVRsvAwsp-~g~~L 76 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------------------GHKRSVRSVAWSP-HGRYL 76 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------------------cchheeeeeeecC-CCcEE
Confidence 447888876 8888888888877777654 2222211110 0112245778888 67755
Q ss_pred EEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC-CC
Q 016318 147 IADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP-TT 224 (391)
Q Consensus 147 V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~~ 224 (391)
++-++.. +..+....+.++-+.. .+|. -+-.-.++..++|++..+-+. +..|+.+.. ++
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~-lEGH-EnEVK~Vaws~sG~~LATCSR-----------------DKSVWiWe~ded 137 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVAT-LEGH-ENEVKCVAWSASGNYLATCSR-----------------DKSVWIWEIDED 137 (312)
T ss_pred EEeeccceEEEeecCCCceeEEee-eecc-ccceeEEEEcCCCCEEEEeeC-----------------CCeEEEEEecCC
Confidence 5544444 3333333455555432 2332 245667899999998777643 234444432 23
Q ss_pred CeEE---EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 225 KQTT---VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 225 ~~~~---~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.+.+ ++.+..+..-.+.++|-+. |+++-+..+.|..|+-.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 3433 3344456667899999888 77887888888888754
No 234
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.83 E-value=7.8 Score=35.69 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=73.3
Q ss_pred cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccC
Q 016318 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
...+.|++..+.|.|+.+...|..++..+...+..... +. ..-+.++.++-++|+++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~~~~G~~----------------- 73 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADESTIVTGGL----------------- 73 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CC---ceeeeeccCCceEEEecc-----------------
Confidence 34678887678899998877777777665433322221 11 123456666667877763
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+|.|.+||.++++..++........+|...+-.. ..++.....+|..++..
T Consensus 74 -dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 -DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPR 124 (323)
T ss_pred -CceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecc
Confidence 4889999999998888766655666777765554 56776777888887744
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=8.8 Score=36.26 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=62.0
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~ 255 (391)
.....|.-.+||..|++.+- ++..+..+|+++++-..+. .++..-.-+-++||+++++.+ +.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t~ 258 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-TC 258 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-cc
Confidence 34566777888999888643 2457889999998877665 344444456799999965544 54
Q ss_pred CCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318 256 VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 292 (391)
Q Consensus 256 ~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~ 292 (391)
.++.++|.... .-+.|.+.-.+|....-+-++.|.
T Consensus 259 -davfrlw~e~q-~wt~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 259 -DAVFRLWQENQ-SWTKERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred -cceeeeehhcc-cceecceeccCCceeeeeecCCCC
Confidence 46677763321 223344444456555566778887
No 236
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=16 Score=38.78 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=83.5
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKT 142 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~ 142 (391)
|....-.++.++|.-+++...+.|+.|..||.. .+..|.. ..+|=+-++.+| .
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-----------------------endRFW~laahP-~ 303 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-----------------------ENDRFWILAAHP-E 303 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-----------------------cCCeEEEEEecC-C
Confidence 556677899999988988889999999999887 3333322 146667788888 7
Q ss_pred CcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 143 GDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 143 g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
.+||.|....|+.+|-.+-. .-..++..++-+|+-+ ..+..||-
T Consensus 304 lNLfAAgHDsGm~VFkleRE----------------rpa~~v~~n~LfYvkd--------------------~~i~~~d~ 347 (1202)
T KOG0292|consen 304 LNLFAAGHDSGMIVFKLERE----------------RPAYAVNGNGLFYVKD--------------------RFIRSYDL 347 (1202)
T ss_pred cceeeeecCCceEEEEEccc----------------CceEEEcCCEEEEEcc--------------------ceEEeeec
Confidence 89999988888666543311 1123444444455544 36777777
Q ss_pred CCCeEEEec---cC---CCCcceEEEccCCCEEEEEe
Q 016318 223 TTKQTTVLL---RN---LQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 223 ~~~~~~~~~---~~---~~~~ngia~~~d~~~l~v~e 253 (391)
.+.+-..+. .. ...|..+...|.++.+.++.
T Consensus 348 ~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 348 RTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred cccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 664333322 11 13456788888888777773
No 237
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=92.65 E-value=7.5 Score=35.04 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=55.5
Q ss_pred eEEEeCCCCeeEEceec--cCCCcccCCcceee--cCC-CCEEEEeCCCcccchhheeeecccCCCceEEEE---eCCCC
Q 016318 154 LMKVGPEGGLATSLATE--AEGVPLRFTNDLDI--DDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY---DPTTK 225 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~--~~~~~~~~~~~l~~--d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~---d~~~~ 225 (391)
++.+|++++.++.+... .....++.+++++. ++. |.+|+-.+. +.|-+-.| |...|
T Consensus 128 ~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~----------------~qG~~~Qy~l~d~gnG 191 (364)
T COG4247 128 FYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR----------------RQGDIAQYKLIDQGNG 191 (364)
T ss_pred EEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec----------------CCCceeEEEEEecCCc
Confidence 78899998887777644 22234567888876 343 777766532 12333333 22333
Q ss_pred eEE-EeccCCCC---cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 226 QTT-VLLRNLQF---PNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 226 ~~~-~~~~~~~~---~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
++. .+...+.+ ..|+..+..-.+||++|. .-.||+|..+
T Consensus 192 kv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 192 KVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred eEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence 322 22233333 346666655556999975 5689999865
No 238
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.64 E-value=0.17 Score=27.71 Aligned_cols=17 Identities=12% Similarity=0.474 Sum_probs=13.4
Q ss_pred CCceEeCCCCCEEEEEc
Q 016318 282 PDNVRTNEKGEFWVAIH 298 (391)
Q Consensus 282 p~~i~~d~~G~lwva~~ 298 (391)
...|..|++|++|+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34688999999999975
No 239
>PHA02713 hypothetical protein; Provisional
Probab=92.62 E-value=7 Score=40.05 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=70.8
Q ss_pred CCcEEEEECCC------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCccc---chhheeee---c
Q 016318 142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ---RRNFMQLV---F 209 (391)
Q Consensus 142 ~g~L~V~d~~~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~---~~~~~~~~---~ 209 (391)
+|.|||..... .+.++|+.+++.+.+...... ..-.+++ .-+|.||+....+... ...+...+ .
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~---r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA---LSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc---cccccEE-EECCEEEEEeCCCcccccccccccccccccc
Confidence 67898865432 278899998887765432111 1111222 2378999986321100 00000000 0
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCC---CcceEEEccCCCEEEEEeCCC------CeEEEEEeccccCccceeecccCC
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQ---FPNGLSLSKDKSFFVFCEGSV------GRLHKYWLIGEKAGNLEAFAILPG 280 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~---~~ngia~~~d~~~l~v~et~~------~~I~~~~~~g~~~g~~~~~~~~~g 280 (391)
.......+.+|||.+.+...+.. +. ...+++.- +++ ||+.-..+ ..+.+|+.... .+.+....+|.
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~ 501 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTES 501 (557)
T ss_pred cccccceEEEECCCCCeEeecCC-CCcccccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCc
Confidence 00113569999999998876542 22 22234332 455 88874321 24667764320 23333333331
Q ss_pred --CCCceEeCCCCCEEEEE
Q 016318 281 --YPDNVRTNEKGEFWVAI 297 (391)
Q Consensus 281 --~p~~i~~d~~G~lwva~ 297 (391)
.--+++. -+|.+|+.-
T Consensus 502 ~r~~~~~~~-~~~~iyv~G 519 (557)
T PHA02713 502 RLSALHTIL-HDNTIMMLH 519 (557)
T ss_pred ccccceeEE-ECCEEEEEe
Confidence 1123333 366788743
No 240
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=92.58 E-value=1.3 Score=39.40 Aligned_cols=134 Identities=18% Similarity=0.160 Sum_probs=65.5
Q ss_pred cchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCC-----ceeE-EEeecCCCcccCCCCCCccccccc
Q 016318 53 DKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-----KWTD-FAFTSNNRSELCNPKPIATSYLKN 126 (391)
Q Consensus 53 ~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 126 (391)
.++.+...+++..++...=..|++++.|- ||+-..+|.++|.... .|.. .+. ..
T Consensus 65 ~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~~~-------------------~i 124 (229)
T PF14517_consen 65 GNTWDSGSKQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGSGK-------------------KI 124 (229)
T ss_dssp T--HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-HSE-------------------EE
T ss_pred cccccccCcccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhccce-------------------ec
Confidence 33445667778777333334999999997 9999999999988554 1210 000 01
Q ss_pred -cCccCccceEEEecCCCcEEEEECCCCeEEE-eCCCCeeEEce--eccCCCcccCCcceeecCCCCEEEEeCCCcccch
Q 016318 127 -EHICGRPLGLRFDKKTGDLYIADAYFGLMKV-GPEGGLATSLA--TEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRR 202 (391)
Q Consensus 127 -~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~-d~~~g~~~~~~--~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~ 202 (391)
.........+.+++ +|.||+-+...-+++. .+.++.-+=+. ....+.....+.-|...++|+||..++
T Consensus 125 G~~GW~~f~~vfa~~-~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------- 196 (229)
T PF14517_consen 125 GGTGWNDFDAVFAGP-NGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------- 196 (229)
T ss_dssp E-SSGGGEEEEEE-T-TS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E-------
T ss_pred ccCCCccceEEEeCC-CccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec-------
Confidence 11234456777887 7889988755446666 34332111000 011111122355677888999999864
Q ss_pred hheeeecccCCCceEEEEeCCCC
Q 016318 203 NFMQLVFSAEDTGRVLKYDPTTK 225 (391)
Q Consensus 203 ~~~~~~~~~~~~g~l~~~d~~~~ 225 (391)
+|.|+|+.+.+.
T Consensus 197 -----------~G~lyr~~~p~~ 208 (229)
T PF14517_consen 197 -----------NGKLYRGRPPQN 208 (229)
T ss_dssp -----------TTEEEEES---S
T ss_pred -----------CCEEeccCCccc
Confidence 488999876553
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=3.9 Score=40.79 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=90.2
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.|-+.+-..++-+|+.+|.+-.||+. .+..+-.... -... ......-.+..+.|+.++=++-|+.
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~---v~s~---------pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS---VNSH---------PGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccc---cCCC---------ccccccCcceEEEecCCceeEEeec
Confidence 44555666667888889999999886 2222211100 0000 0011123467888875222456666
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV 229 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 229 (391)
+...++.+|..+.+--.+..+..+.++.....+..+....++-.|. ..+-.||+.+|+...
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPMA 308 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch-------------------HHhhhcccccCCcee
Confidence 5556999998876433332333333333322222232334444442 134458999999888
Q ss_pred eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
..+....-|.+|+-|+...++++ ..+..+.-|.+
T Consensus 309 siEpt~~lND~C~~p~sGm~f~A-ne~~~m~~yyi 342 (703)
T KOG2321|consen 309 SIEPTSDLNDFCFVPGSGMFFTA-NESSKMHTYYI 342 (703)
T ss_pred eccccCCcCceeeecCCceEEEe-cCCCcceeEEc
Confidence 88887788999998988856555 44556666654
No 242
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.35 E-value=10 Score=35.88 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=103.1
Q ss_pred CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
..+.-++++.++..+||.+.. ..|-++|.+.+++-.-. ..+| +..+.-..+..++ +
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PG-----C~~iyP~~~~~F~-~--------------- 152 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPG-----CWLIYPSGNRGFS-M--------------- 152 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTS-----EEEEEEEETTEEE-E---------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCC-----EEEEEecCCCceE-E---------------
Confidence 445667887756678998765 45889998877653211 1111 1111111111211 1
Q ss_pred cccCCCceEEEE--eCCCCeEEEe---ccCC---CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceee---cc
Q 016318 209 FSAEDTGRVLKY--DPTTKQTTVL---LRNL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF---AI 277 (391)
Q Consensus 209 ~~~~~~g~l~~~--d~~~~~~~~~---~~~~---~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~---~~ 277 (391)
..++|++..+ |.+++..... .... .+-+. +.+.++..+|+. +.++.|+-.++.|....-...+ .+
T Consensus 153 --lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~-~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 153 --LCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP-AYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp --EETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred --EecCCceEEEEECCCCCEeEeeccccCCCCccccccc-ceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCc
Confidence 1224665543 4333332111 1111 12222 233344445555 6788999999988642211222 11
Q ss_pred -------cCCCCCceEeC-CCCCEEEEEcCCCchhh-----hhhhcCccceeeeeecCccceeeeEEeecCccceEEEEE
Q 016318 278 -------LPGYPDNVRTN-EKGEFWVAIHCRRSLYS-----HLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKY 344 (391)
Q Consensus 278 -------~~g~p~~i~~d-~~G~lwva~~~~~~~~~-----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~ 344 (391)
.||.=.-++.+ +.|++||.++.+..--+ .........++.+.+++.... ..++.+.....+.++.+
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEE
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEE
Confidence 23322337776 46679998764321100 012224456778888876532 33566666677888888
Q ss_pred CCCCCEEEEEeCCCCCeeece
Q 016318 345 SPEGKILQVLEDSKGKVVKAI 365 (391)
Q Consensus 345 d~~g~~~~~~~~~~g~~~~~i 365 (391)
+.....+.+|...+|+..+.+
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE
T ss_pred cCCCCeEEEEeCcCCcEEeeh
Confidence 876667888888888765544
No 243
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.28 E-value=15 Score=37.81 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=56.7
Q ss_pred cceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCe
Q 016318 180 NDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGR 258 (391)
Q Consensus 180 ~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~ 258 (391)
..-..+++| .||+...+.. +.-+......+.++..+.+.++... ..-.....+.++|||..+.+.- .++
T Consensus 400 t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~ 469 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGK 469 (591)
T ss_pred CCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCE
Confidence 334677884 6888753211 1111112234566666665555543 1112467899999999888764 357
Q ss_pred EEEEEeccccCcccee-----ec-ccCCCCCceEeCCCCCEEEEEc
Q 016318 259 LHKYWLIGEKAGNLEA-----FA-ILPGYPDNVRTNEKGEFWVAIH 298 (391)
Q Consensus 259 I~~~~~~g~~~g~~~~-----~~-~~~g~p~~i~~d~~G~lwva~~ 298 (391)
|+..-+.-...|..+. .. .+...+.++.--.++.|.++..
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~ 515 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS 515 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence 7773332222232222 11 1222235566666777776644
No 244
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.13 E-value=4.4 Score=37.65 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=35.5
Q ss_pred ceEEEEeCCCCeEEEe------ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 215 GRVLKYDPTTKQTTVL------LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~------~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.-|..+|.-+|+.+.- .+....+..++|+|||..||.. .+++|..++..-
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~R 188 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSR 188 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccC
Confidence 3466677777776543 2345567899999999977654 477899998753
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.07 E-value=2.9 Score=40.59 Aligned_cols=99 Identities=8% Similarity=0.118 Sum_probs=53.8
Q ss_pred eeecccCCCceEEEEeCCCCeEEEec-----------cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccce
Q 016318 206 QLVFSAEDTGRVLKYDPTTKQTTVLL-----------RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLE 273 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~~~~~~~~-----------~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~ 273 (391)
.++|..+|.+.|+..--..|.+..+- ......++||++++|+++ +.++ .+++..+++..- -+..
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YM--aTtG~Dr~~kIWDlR~~--~ql~ 329 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYM--ATTGLDRKVKIWDLRNF--YQLH 329 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEE--eecccccceeEeeeccc--cccc
Confidence 34455555555554444444443332 122345799999999844 3343 345555555432 1222
Q ss_pred eecccCCCCCceEeCCCCCEEEEEcCCCchhhhhhh
Q 016318 274 AFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMA 309 (391)
Q Consensus 274 ~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~ 309 (391)
.+.. |-...+++++..|.+-++.......+.|++.
T Consensus 330 t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALK 364 (545)
T ss_pred eeec-CCCccccccccccceeeecCCeeeeehhhhc
Confidence 2222 3234578888888777776665555655554
No 246
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.80 E-value=6.7 Score=39.98 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=73.9
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.-+++....++. +.+|++|..+.+|...+... .|. ........+..-+ ++.+.-+.
T Consensus 103 nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~----------~l~------------gH~asVWAv~~l~-e~~~vTgs 158 (745)
T KOG0301|consen 103 NVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY----------SLQ------------GHTASVWAVASLP-ENTYVTGS 158 (745)
T ss_pred ceeeeecCCcCc-eEecccccceEEecchhhhc----------ccC------------CcchheeeeeecC-CCcEEecc
Confidence 345666666776 78888888777774432110 011 1112234555555 45333344
Q ss_pred CCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEE
Q 016318 150 AYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTV 229 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~ 229 (391)
+.+-|..+.-. ..++++..+ ....+++++-+++.+.=++ .+|.|..++.++.-+..
T Consensus 159 aDKtIklWk~~-~~l~tf~gH-----tD~VRgL~vl~~~~flScs------------------NDg~Ir~w~~~ge~l~~ 214 (745)
T KOG0301|consen 159 ADKTIKLWKGG-TLLKTFSGH-----TDCVRGLAVLDDSHFLSCS------------------NDGSIRLWDLDGEVLLE 214 (745)
T ss_pred CcceeeeccCC-chhhhhccc-----hhheeeeEEecCCCeEeec------------------CCceEEEEeccCceeee
Confidence 44445555432 233433222 2367788887775543322 14667778775544444
Q ss_pred eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
....-.+-..+....++. ++++ ++..|=.|+|
T Consensus 215 ~~ghtn~vYsis~~~~~~-~Ivs-~gEDrtlriW 246 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDG-LIVS-TGEDRTLRIW 246 (745)
T ss_pred eeccceEEEEEEecCCCC-eEEE-ecCCceEEEe
Confidence 444445666676444444 5555 3334444554
No 247
>PHA03098 kelch-like protein; Provisional
Probab=91.70 E-value=11 Score=38.42 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=43.6
Q ss_pred CCcEEEEECC-------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 142 ~g~L~V~d~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.+||.... +.+.++|+.+++.+.+...... .. ..-++.-+|.||+....+.... ....
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---r~-~~~~~~~~~~iyv~GG~~~~~~---------~~~~ 455 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS---HY-GGCAIYHDGKIYVIGGISYIDN---------IKVY 455 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc---cc-CceEEEECCEEEEECCccCCCC---------Cccc
Confidence 6789986431 2388999998887765321111 11 1122333678998763210000 0012
Q ss_pred ceEEEEeCCCCeEEEec
Q 016318 215 GRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~ 231 (391)
..+++||+.+++.+.+.
T Consensus 456 ~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 456 NIVESYNPVTNKWTELS 472 (534)
T ss_pred ceEEEecCCCCceeeCC
Confidence 34899999999887764
No 248
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=4.9 Score=38.37 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=48.5
Q ss_pred ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC--CCCcceEEEccCCCEEEEEe
Q 016318 176 LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN--LQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~ngia~~~d~~~l~v~e 253 (391)
+.....|+++.+|++..-.+. +|.|..|+..+-+.-.+... ..+..+++|+||.+.+ ..-
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~-----------------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~sv 342 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTM-----------------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASV 342 (398)
T ss_pred cCcceeEEEcCCCcEEEEecc-----------------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-ccc
Confidence 446788999999987665433 57888898776665555433 2377899999998843 233
Q ss_pred CCCCeEEEEEecc
Q 016318 254 GSVGRLHKYWLIG 266 (391)
Q Consensus 254 t~~~~I~~~~~~g 266 (391)
+...++....+..
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 3445555555444
No 249
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=91.64 E-value=5.1 Score=41.74 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=85.5
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
..++.++++.+-++..+|+|..|..-.. .+....|+. +.+ ......++.|+.++..||=|. ..
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~~t~t~-------lHW--H~~~V~~L~fS~~G~~LlSGG-~E 272 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGS-------SDDSETCTL-------LHW--HHDEVNSLSFSSDGAYLLSGG-RE 272 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEecccc-------ccccccceE-------EEe--cccccceeEEecCCceEeecc-cc
Confidence 5678889998888888999988843210 011111110 001 012356788988444555543 23
Q ss_pred C-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 153 G-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 153 g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
| +.+....|++.+.+ .... ...-++++.+|+++|-.-.. ++.+......+-+.+.-.
T Consensus 273 ~VLv~Wq~~T~~kqfL-PRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFL-PRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTI 330 (792)
T ss_pred eEEEEEeecCCCcccc-cccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhc
Confidence 4 66667777773333 2222 23567888999988876532 234444433332222211
Q ss_pred cC------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 232 RN------------LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 232 ~~------------~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.+ -.++.+++++|.-+.+.+ ....++|.-|++-.
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYT 376 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceee-cCCCceEEEEeccc
Confidence 11 235678999985443333 35677888887654
No 250
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.54 E-value=0.27 Score=26.92 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=15.8
Q ss_pred ccCCcceeecCCCCEEEEeC
Q 016318 176 LRFTNDLDIDDEGNVYFTDS 195 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td~ 195 (391)
....+.|..|++|+||+++.
T Consensus 4 ~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 4 NNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSCEEEEEE-TTSCEEEEET
T ss_pred CCeEEEEEEcCCcCEEEEeC
Confidence 34678899999999999973
No 251
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=91.40 E-value=13 Score=35.12 Aligned_cols=158 Identities=17% Similarity=0.072 Sum_probs=87.2
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
.|-+.+-.++++||-+..+.+|+.|+.|-.||-..-....... + ......|+++++..--
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-G-------------------hi~~vr~vavS~rHpY 207 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-G-------------------HIETVRGVAVSKRHPY 207 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-c-------------------hhheeeeeeecccCce
Confidence 4556688999999976644557778888888765111111110 0 1233457888863223
Q ss_pred EEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 145 LYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
|+-+...+-+-++|...+++-+ ...| .+.....++..|.-.+.++.+. +..+-.+|..+
T Consensus 208 lFs~gedk~VKCwDLe~nkvIR---~YhG-HlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRt 266 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKVIR---HYHG-HLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRT 266 (460)
T ss_pred EEEecCCCeeEEEechhhhhHH---Hhcc-ccceeEEEeccccceeEEecCC-----------------cceEEEeeecc
Confidence 4444333448888887664322 1112 2445677888887777777643 33455677776
Q ss_pred CeEEEeccCCC-CcceEEEcc-CCCEEEEEeCCCCeEEEEEec
Q 016318 225 KQTTVLLRNLQ-FPNGLSLSK-DKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 225 ~~~~~~~~~~~-~~ngia~~~-d~~~l~v~et~~~~I~~~~~~ 265 (391)
+.....+.+-. ..+.|...| |.+ ++-+ +....|..+++.
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpq-vit~-S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQ-VITG-SHDSTVRLWDLR 307 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCc-eEEe-cCCceEEEeeec
Confidence 65443333322 223444433 555 5443 445566666654
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.38 E-value=17 Score=36.49 Aligned_cols=175 Identities=21% Similarity=0.254 Sum_probs=95.7
Q ss_pred cccCcc---eEEEccCCCeeE-EEecCCEEEEEeCC----c--------eeEEEeecCCCcccCCCCCCccccccccCcc
Q 016318 67 QIQGPE---SMAFDPLGRGPY-TGVADGRILFWDGL----K--------WTDFAFTSNNRSELCNPKPIATSYLKNEHIC 130 (391)
Q Consensus 67 ~~~gPe---~i~~d~~G~~ly-~~~~~g~I~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (391)
++..|+ .|-+.+||..++ +|++.-+|-+++-. + ...|...++..+..|-- ...+.+..-...
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L--~~DR~IefHak~ 124 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL--QNDRTIEFHAKY 124 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe--ecCceeeehhhc
Confidence 355554 567889999554 46777778777654 1 22232233322222100 000111111112
Q ss_pred Cc------c---ceEEEecCCCcEEEEECCCCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCccc
Q 016318 131 GR------P---LGLRFDKKTGDLYIADAYFGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQ 200 (391)
Q Consensus 131 g~------P---~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~ 200 (391)
|+ | ..|+++.-.-.||++.++..||++|.+-|.+- .+... ....|.+.+.+-..|..+.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~G------ 193 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACG------ 193 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc-----cccceeeeecCccceEEec------
Confidence 22 2 24555543567999888888999999876432 22111 1234555565544444433
Q ss_pred chhheeeecccCCCceEEEEeCCCCeEE-Eec-----------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 201 RRNFMQLVFSAEDTGRVLKYDPTTKQTT-VLL-----------RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 201 ~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~-----------~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
..+|.+-.||+.+++.- .+. +....+..+.++.||-.+-|. |..+.++.|++..
T Consensus 194 -----------t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa 259 (703)
T KOG2321|consen 194 -----------TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG-TSTGSVLIYDLRA 259 (703)
T ss_pred -----------ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee-ccCCcEEEEEccc
Confidence 22578888998776432 111 112235678888888666666 6778999999764
No 253
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=91.19 E-value=3.8 Score=37.89 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=84.4
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCc---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcEEEE
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLK---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLYIA 148 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L~V~ 148 (391)
...+.++|+.+.+++.||.|-.|+.+. ..+|...+ +.-..+.+..-|. ...+.||
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~---------------------~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG---------------------TDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC---------------------CcccceeEEEcCCCCceEEEE
Confidence 345667999899999999999998762 11221111 0011123333331 2357788
Q ss_pred ECCCCeEEEeCCCCeeEEceec-cCCCcccCCcceeecCCCC-EEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 149 DAYFGLMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~-~~~~~~~~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
+..+.++.++.++-.++.+... -+|. .|.+ -++.+.|. +|-... ++.+|+|...+|+
T Consensus 412 Nrsntv~imn~qGQvVrsfsSGkREgG--dFi~-~~lSpkGewiYcigE------------------D~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 412 NRSNTVYIMNMQGQVVRSFSSGKREGG--DFIN-AILSPKGEWIYCIGE------------------DGVLYCFSVLSGK 470 (508)
T ss_pred cCCCeEEEEeccceEEeeeccCCccCC--ceEE-EEecCCCcEEEEEcc------------------CcEEEEEEeecCc
Confidence 7777899999887666655432 1111 2333 24456664 444432 5789999998888
Q ss_pred EEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 227 TTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 227 ~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
.+..... -..+-|++-+|..+ ++.+ -...++.+.|
T Consensus 471 LE~tl~VhEkdvIGl~HHPHqN-llAs-YsEDgllKLW 506 (508)
T KOG0275|consen 471 LERTLPVHEKDVIGLTHHPHQN-LLAS-YSEDGLLKLW 506 (508)
T ss_pred eeeeeecccccccccccCcccc-hhhh-hcccchhhhc
Confidence 7665422 24567888888777 4433 2233444443
No 254
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.02 E-value=1.2 Score=27.65 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=27.8
Q ss_pred CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEc
Q 016318 189 NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLS 243 (391)
Q Consensus 189 ~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~ 243 (391)
.+|+++.. .+.|..+|+.+++...-......|.+++++
T Consensus 5 ~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 5 KLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred EEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 58988854 578999999888765555455678888764
No 255
>PHA02713 hypothetical protein; Provisional
Probab=90.94 E-value=21 Score=36.64 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCcEEEEECC-------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 142 TGDLYIADAY-------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 142 ~g~L~V~d~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.|||.... ..++++|+.++..+.+..... .....-+..-+|.||+...... ....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~----~R~~~~~~~~~g~IYviGG~~~------------~~~~ 366 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK----NRCRFSLAVIDDTIYAIGGQNG------------TNVE 366 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc----hhhceeEEEECCEEEEECCcCC------------CCCC
Confidence 5789887442 127899999887665432111 1111122333789999863210 0112
Q ss_pred ceEEEEeCCCCeEEEec
Q 016318 215 GRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~ 231 (391)
..+.+|||.+++...+.
T Consensus 367 ~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 367 RTIECYTMGDDKWKMLP 383 (557)
T ss_pred ceEEEEECCCCeEEECC
Confidence 45899999998887654
No 256
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.90 E-value=2.9 Score=39.07 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=68.8
Q ss_pred CccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheee
Q 016318 128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 128 ~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~ 207 (391)
+.|...+++.|. +|-+.-+.-...+-+.|.....-..+....-|. ....|-+.+|.. +.++.++
T Consensus 275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~k--yIVsASg----------- 338 (499)
T KOG0281|consen 275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDK--YIVSASG----------- 338 (499)
T ss_pred hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccccc--eEEEecC-----------
Confidence 456677888885 343333333344544444332211111111111 124555555544 4444443
Q ss_pred ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEe
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRT 287 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~ 287 (391)
+..+-.++..|++......+ .-.|||--.=...+.|+.+..+.|..+++.-.+ -..++.....+...|++
T Consensus 339 ------DRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--cLRvLeGHEeLvRciRF 408 (499)
T KOG0281|consen 339 ------DRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRF 408 (499)
T ss_pred ------CceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccccH--HHHHHhchHHhhhheee
Confidence 34677788888776443322 345676544333488888888888888865321 11222211124556777
Q ss_pred CC
Q 016318 288 NE 289 (391)
Q Consensus 288 d~ 289 (391)
|.
T Consensus 409 d~ 410 (499)
T KOG0281|consen 409 DN 410 (499)
T ss_pred cC
Confidence 64
No 257
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.80 E-value=21 Score=36.59 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=90.7
Q ss_pred ccCcceEEEc------cCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318 68 IQGPESMAFD------PLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (391)
Q Consensus 68 ~~gPe~i~~d------~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~ 141 (391)
+++|+++... .++..+.++..|..|.++...+...+.....+. +...++....
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~--------------------snVC~ls~~~- 111 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK--------------------SNVCSLSIGE- 111 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc--------------------cceeeeecCC-
Confidence 5566655433 333337888888888888766444443322222 2233344443
Q ss_pred CCcEEEEECCCC--eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318 142 TGDLYIADAYFG--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK 219 (391)
Q Consensus 142 ~g~L~V~d~~~g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~ 219 (391)
++.|.-+.+..- +++.. +.. ...++.+ .....++.-+++ .|+|.+. +..|..
T Consensus 112 ~~~~iSgSWD~TakvW~~~----~l~---~~l~gH~-asVWAv~~l~e~-~~vTgsa-----------------DKtIkl 165 (745)
T KOG0301|consen 112 DGTLISGSWDSTAKVWRIG----ELV---YSLQGHT-ASVWAVASLPEN-TYVTGSA-----------------DKTIKL 165 (745)
T ss_pred cCceEecccccceEEecch----hhh---cccCCcc-hheeeeeecCCC-cEEeccC-----------------cceeee
Confidence 455444444433 33221 111 1111111 133455666665 7787754 223333
Q ss_pred EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318 220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
|.. ....+++........|+++-++..++-++ ..+.|.+++++|.- .........+...|....++.+.|++..
T Consensus 166 Wk~-~~~l~tf~gHtD~VRgL~vl~~~~flScs--NDg~Ir~w~~~ge~---l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 166 WKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCS--NDGSIRLWDLDGEV---LLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ccC-CchhhhhccchhheeeeEEecCCCeEeec--CCceEEEEeccCce---eeeeeccceEEEEEEecCCCCeEEEecC
Confidence 433 23333443334456788888887755443 34566666666631 1111111123445665566667787777
Q ss_pred CCchh
Q 016318 300 RRSLY 304 (391)
Q Consensus 300 ~~~~~ 304 (391)
.+...
T Consensus 240 Drtlr 244 (745)
T KOG0301|consen 240 DRTLR 244 (745)
T ss_pred CceEE
Confidence 76643
No 258
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.57 E-value=22 Score=36.23 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=43.0
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCc--eEeC
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDN--VRTN 288 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~--i~~d 288 (391)
+.|.|..+|+.+|++.--.. ...| .+-.+.-.+..+++ .+.++.++.++.+. |+ .++. .+++...+ |...
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l~t~g~lvf~-g~~~G~l~a~D~~T---Ge-~lw~~~~g~~~~a~P~ty~ 512 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHK-EDFPLWGGVLATAGDLVFY-GTLEGYFKAFDAKT---GE-ELWKFKTGSGIVGPPVTYE 512 (527)
T ss_pred CceeEEEEeCCCCceeeEec-CCCCCCCcceEECCcEEEE-ECCCCeEEEEECCC---CC-EeEEEeCCCCceecCEEEE
Confidence 46789999999997654322 1222 11122234553444 46677888888543 32 2222 23321111 4434
Q ss_pred CCCCEEEEEcC
Q 016318 289 EKGEFWVAIHC 299 (391)
Q Consensus 289 ~~G~lwva~~~ 299 (391)
.+|+.||+...
T Consensus 513 ~~G~qYv~~~~ 523 (527)
T TIGR03075 513 QDGKQYVAVLS 523 (527)
T ss_pred eCCEEEEEEEe
Confidence 57888887654
No 259
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.51 E-value=1.3 Score=27.47 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=27.6
Q ss_pred cCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 244 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 244 ~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
||++++|+++...+.|..++... ++...-......|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence 57888999998889999998642 2211112233468887764
No 260
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.50 E-value=3 Score=44.00 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=63.7
Q ss_pred cEEEEECCCCeEEEeCCCCeeEEceecc-CCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 144 DLYIADAYFGLMKVGPEGGLATSLATEA-EGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~-~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
.-++|-..++|+++||.-..-+.+.... .-..-.....++.+.+|.|-+++. .|.|-.||.
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~ 605 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDR 605 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecc
Confidence 4677777788999988642211111111 001123445678888999888874 377778887
Q ss_pred CCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 223 TTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
-+.+.++...++..| .||.++.||+||+. |...-|..++
T Consensus 606 ~g~~AKT~lp~lG~pI~~iDvt~DGkwila--Tc~tyLlLi~ 645 (794)
T PF08553_consen 606 LGKRAKTALPGLGDPIIGIDVTADGKWILA--TCKTYLLLID 645 (794)
T ss_pred cchhhhhcCCCCCCCeeEEEecCCCcEEEE--eecceEEEEE
Confidence 666677777777655 59999999996654 3344555555
No 261
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=90.40 E-value=15 Score=34.22 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=72.8
Q ss_pred CCcEEEEECCCC-eEEEeCCCCeeEEceeccCC-CcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318 142 TGDLYIADAYFG-LMKVGPEGGLATSLATEAEG-VPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK 219 (391)
Q Consensus 142 ~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~ 219 (391)
+-+||.+..... |..+|.-+|+.+--....+. ........+++.+||.-.|+... ..|-.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk------------------rcirv 183 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK------------------RCIRV 183 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc------------------ceEEE
Confidence 456776665533 88888888876543222111 12445678999999964454421 23444
Q ss_pred EeC-CCCeE-EE---eccC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCC
Q 016318 220 YDP-TTKQT-TV---LLRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEK 290 (391)
Q Consensus 220 ~d~-~~~~~-~~---~~~~----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~ 290 (391)
||. ..|.- .+ +..+ ......++++|-....+..-+..+++-.|.-.+. +-..+.....|...-+...++
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEeccC
Confidence 554 22221 11 1111 1123456788866545555566677666654331 111122222344555677888
Q ss_pred CC-EEEEEcCC
Q 016318 291 GE-FWVAIHCR 300 (391)
Q Consensus 291 G~-lwva~~~~ 300 (391)
|+ +|++....
T Consensus 262 Gn~lfsGaRk~ 272 (406)
T KOG2919|consen 262 GNKLFSGARKD 272 (406)
T ss_pred cCeecccccCC
Confidence 88 77765443
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=5.4 Score=37.88 Aligned_cols=138 Identities=12% Similarity=-0.042 Sum_probs=79.0
Q ss_pred CcceEEEccC--CCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEE
Q 016318 70 GPESMAFDPL--GRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLY 146 (391)
Q Consensus 70 gPe~i~~d~~--G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~ 146 (391)
++.++.|-+. ...+.+++.-+.+..||+. +-+.++.+.- .| .-...+...++++.+|
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-----------------~E---~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-----------------LE---NPISSTGLTPSGNFIY 263 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-----------------cc---CcceeeeecCCCcEEE
Confidence 5556655543 4557888888999999887 4444443310 00 1122455666455689
Q ss_pred EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
++++...|..||..+++..-. ...|. -..+.+|..++.+.+..+..- +..|-.||.++.+
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~--~~kg~-tGsirsih~hp~~~~las~GL-----------------DRyvRIhD~ktrk 323 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGC--GLKGI-TGSIRSIHCHPTHPVLASCGL-----------------DRYVRIHDIKTRK 323 (412)
T ss_pred EecccchhheecccCceeecc--ccCCc-cCCcceEEEcCCCceEEeecc-----------------ceeEEEeecccch
Confidence 998877799999987753322 12221 235788888888777665422 1234446766533
Q ss_pred EEEeccCCCCcceEEEccCCC
Q 016318 227 TTVLLRNLQFPNGLSLSKDKS 247 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~ 247 (391)
...-.-.-..+|+|.+.++-+
T Consensus 324 ll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 324 LLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred hhhhhhhhccccEEEecCCcc
Confidence 322111123566776655443
No 263
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.26 E-value=5.3 Score=42.28 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=80.2
Q ss_pred ccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC------CCCEEEEeCCCcccchh
Q 016318 132 RPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD------EGNVYFTDSSTNYQRRN 203 (391)
Q Consensus 132 ~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~------~G~ly~td~~~~~~~~~ 203 (391)
.|..+-++..+.+|++-+.. +.|+++|...|++-.-.......+ ..+++-+. +...|++-+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~---v~~~~p~~K~aqlt~e~tflGls-------- 550 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP---VVDIAPDSKFAQLTNEQTFLGLS-------- 550 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc---eeEecccccccccCCCceEEEEC--------
Confidence 46665565546677777654 569999999987654333222111 22222111 123344432
Q ss_pred heeeecccCCCceEEEEeCCCCeEEEeccCC-CC-----cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc
Q 016318 204 FMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL-QF-----PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI 277 (391)
Q Consensus 204 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~-----~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~ 277 (391)
..+|+++||.-...+.+.... .+ -..+|-+.+|. |.|+ +..+.|..|+-.|.++. ..
T Consensus 551 ----------~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg-s~~G~IRLyd~~g~~AK-----T~ 613 (794)
T PF08553_consen 551 ----------DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG-SNKGDIRLYDRLGKRAK-----TA 613 (794)
T ss_pred ----------CCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE-eCCCcEEeecccchhhh-----hc
Confidence 468999998643322222111 11 23567788887 6676 56778888874442111 12
Q ss_pred cCCC---CCceEeCCCCCEEEEEcCC
Q 016318 278 LPGY---PDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 278 ~~g~---p~~i~~d~~G~lwva~~~~ 300 (391)
+||+ .-+|.+..||+..+|+...
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEeecc
Confidence 5543 2578899999988887654
No 264
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=89.98 E-value=6.1 Score=37.79 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=89.0
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.-.++++.++...+.+++.||+|..|+....++-. .....+..+..+..++ ...|.+.-
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~--------------------vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER--------------------VLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhh--------------------eeccCCCCcceeccCC-ccceeEEc
Confidence 45688999888778888999988888654111000 0111244577888888 44444443
Q ss_pred CC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC-CeE
Q 016318 150 AY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT-KQT 227 (391)
Q Consensus 150 ~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~ 227 (391)
.. +-|-.+|+++|.. +.+... -.+...++.+.++|+...|-+. +-.+-.||..+ +++
T Consensus 241 skDnlVKlWDprSg~c--l~tlh~--HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSC--LATLHG--HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKEL 299 (464)
T ss_pred cCCceeEeecCCCcch--hhhhhh--ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHH
Confidence 33 3355568888742 221111 0134566778888877666543 23455566542 222
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.++...-.+.+.++.+|=...|+++....+.|..+.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 23322334566777888666688776667777776654
No 265
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.73 E-value=8.5 Score=35.97 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=68.6
Q ss_pred ceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEce-ec-c-----CCCcccCCcceeec----CCCCEEEEeCCCcccc
Q 016318 134 LGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLA-TE-A-----EGVPLRFTNDLDID----DEGNVYFTDSSTNYQR 201 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~-~~-~-----~~~~~~~~~~l~~d----~~G~ly~td~~~~~~~ 201 (391)
..+..+. +|+++|+... ..|++|++++|++.=.. .. . .+..+.+-.+..+- .+++|-+-|....-.
T Consensus 147 NsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~- 224 (299)
T PF14269_consen 147 NSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF- 224 (299)
T ss_pred eeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence 4666666 7788887655 34999999988654322 11 0 01112233333333 455555544310000
Q ss_pred hhheeeecccCCCceEEEEeCCCCeEEEeccCC------C--CcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 202 RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNL------Q--FPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 202 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~------~--~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.-.....++++.+|+.+++++.+..-. . ..-.++.-|+|+ ++|++....++.-++.+|
T Consensus 225 ------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 225 ------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG 290 (299)
T ss_pred ------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence 112234678999999877765543211 1 112455667777 777877777777776555
No 266
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.61 E-value=20 Score=34.43 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEE
Q 016318 79 LGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKV 157 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~ 157 (391)
+|+ +|+++.+|.++.++.. .-...... +.. . .+-.+-.+-. ++.+|+.+....++.+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~-------~~~-----------~--~~~~~~~v~~-~~~v~~~s~~g~~~al 168 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRN-------VGG-----------S--PYYASPPVVG-DGTVYVGTDDGHLYAL 168 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEe-------cCC-----------C--eEEecCcEEc-CcEEEEecCCCeEEEE
Confidence 788 9999999999999884 21111111 000 0 0000111222 5778887644569999
Q ss_pred eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 158 GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
|.++|+..-......+.......... ..+|.+|++..+ . ++.++.+|+++|+.
T Consensus 169 ~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 169 NADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL 221 (370)
T ss_pred EccCCcEEEEEecCCccccccccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence 99887543221111101222222333 568899998742 0 24677777766654
No 267
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.12 E-value=24 Score=34.58 Aligned_cols=143 Identities=14% Similarity=0.188 Sum_probs=82.8
Q ss_pred CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeec
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVF 209 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~ 209 (391)
....++++.. +|++++...+.| +..++..++.+..+... .+ ..-.+--..+|+..++..
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kg----PI~slKWnk~G~yilS~~-------------- 295 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNLISTLGQH-KG----PIFSLKWNKKGTYILSGG-------------- 295 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEecCchhhhhhhcc-CC----ceEEEEEcCCCCEEEecc--------------
Confidence 3456888887 788888777777 55556666665555322 11 133455566777655542
Q ss_pred ccCCCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 210 SAEDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 210 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
-+++...+|..+++.++-.+--..| -.|.+-.+.. +++-...++|+++.+.+. .-...|....|....|..+
T Consensus 296 ---vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 296 ---VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred ---CCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCC--CcceeeecccCceEEEEEC
Confidence 2688999999888887754332233 2344433333 334355677888877653 1123333333445556677
Q ss_pred CCCCEEEEEcCC
Q 016318 289 EKGEFWVAIHCR 300 (391)
Q Consensus 289 ~~G~lwva~~~~ 300 (391)
+.|.++.+....
T Consensus 369 ~tg~LLaS~SdD 380 (524)
T KOG0273|consen 369 PTGSLLASCSDD 380 (524)
T ss_pred CCCceEEEecCC
Confidence 777666654443
No 268
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.07 E-value=26 Score=36.00 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=90.8
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecC------C----CcccCCCC----CCc-cccccccCccCcc
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSN------N----RSELCNPK----PIA-TSYLKNEHICGRP 133 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~------~----~~~~~~~~----~~~-~~~~~~~~~~g~P 133 (391)
--++|...||+.+-.|..|..+..|+++ +.-.+.+... | .-..|+-+ +++ ...+.......|.
T Consensus 56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~ 135 (1081)
T KOG1538|consen 56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI 135 (1081)
T ss_pred EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence 4578889999966667777777777665 2222221110 0 00012111 010 1111111234556
Q ss_pred ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC------CCEEEEeCCCcccchhheee
Q 016318 134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE------GNVYFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~------G~ly~td~~~~~~~~~~~~~ 207 (391)
.+-.+.. +|..++-...+|-..+...+|+-+..... +|.+.....+++..+. ..+-+.|.+
T Consensus 136 ~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~----------- 202 (1081)
T KOG1538|consen 136 ICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIER-PGGSNSPIWSICWNPSSGEGRNDILAVADWG----------- 202 (1081)
T ss_pred EEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeC-CCCCCCCceEEEecCCCCCCccceEEEEecc-----------
Confidence 6667766 56665555666755554444443322221 2223334455655442 223444433
Q ss_pred ecccCCCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCcc
Q 016318 208 VFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGN 271 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~ 271 (391)
-.+-.|..++..+..-..-...|..|..-++|.++++.. ....+..|+.+|-..|+
T Consensus 203 -------qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~GvrLGT 258 (1081)
T KOG1538|consen 203 -------QTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGVRLGT 258 (1081)
T ss_pred -------ceeEEEEecceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCeEEee
Confidence 234444443322221111123578888889999998884 45678888888754444
No 269
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.04 E-value=15 Score=32.69 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=65.0
Q ss_pred CccceEEEecCCCcEEEEECC-CCeEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
+....+++.. +|+.-++... +-+-.+||..|. ++.+... | ...-+.+...|+.=+.+
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--G---~EVlD~~~s~Dnskf~s--------------- 76 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--G---HEVLDAALSSDNSKFAS--------------- 76 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCC--C---ceeeecccccccccccc---------------
Confidence 5566778877 6665554433 346677886654 3333221 1 12334444444322222
Q ss_pred cccCCCceEEEEeCCCCeE-EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 209 FSAEDTGRVLKYDPTTKQT-TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
+.++..+..||-+||++ +.+.......|.|++..+.. +.++.+....+..++-
T Consensus 77 --~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 77 --CGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDC 130 (307)
T ss_pred --CCCCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEc
Confidence 23355788999998876 44555667889999976655 7777676666666653
No 270
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.92 E-value=36 Score=36.35 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCcEEEEECCCCeEEEeCCCCee
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLA 164 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~ 164 (391)
++.||+++..+.|+.+|.+||+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~ 216 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE 216 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE
Confidence 68999998877799999998863
No 271
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=88.74 E-value=11 Score=36.29 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=66.5
Q ss_pred eEEEecCCCcEEEEECCCC-eEEEeCCCC--eeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecc
Q 016318 135 GLRFDKKTGDLYIADAYFG-LMKVGPEGG--LATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~g-l~~~d~~~g--~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~ 210 (391)
.+++++....|+.+-...+ |...|..++ +........ -.-.+.+++.+-+ .|..|.++
T Consensus 232 DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah----~~~vn~~~fnp~~~~ilAT~S~-------------- 293 (422)
T KOG0264|consen 232 DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH----SAEVNCVAFNPFNEFILATGSA-------------- 293 (422)
T ss_pred hhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc----CCceeEEEeCCCCCceEEeccC--------------
Confidence 4455554556666655545 677777643 111111111 2346888998855 55555433
Q ss_pred cCCCceEEEEeCCCCeEEE--eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 211 AEDTGRVLKYDPTTKQTTV--LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~--~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+++|..||..+-.... +...-..-..|.++|....++.+....+|+..+++.
T Consensus 294 ---D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 294 ---DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ---CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 6889999986543321 222223456789999998888887777888888875
No 272
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.66 E-value=32 Score=35.56 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=93.1
Q ss_pred eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEe-cCCCcEEEEECCCCeEEEeCCC
Q 016318 83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFD-KKTGDLYIADAYFGLMKVGPEG 161 (391)
Q Consensus 83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d-~~~g~L~V~d~~~gl~~~d~~~ 161 (391)
+.+-+.+..++.++.+..+.......+ ....+.|+|- +++..|.||+....+-.++..|
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~--------------------ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGY--------------------NDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCC--------------------chhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence 555666777777766533322211111 2334556654 3356688887666677777776
Q ss_pred CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC---CCCcc
Q 016318 162 GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN---LQFPN 238 (391)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~n 238 (391)
-..+.+..+.+ ....+++..+|-+.+|.+. ..+-+++|+|.+-.+...+... -..-.
T Consensus 356 ~~c~ii~GH~e-----~vlSL~~~~~g~llat~sK---------------D~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 356 SYCQIIPGHTE-----AVLSLDVWSSGDLLATGSK---------------DKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred CceEEEeCchh-----heeeeeecccCcEEEEecC---------------CceEEEEEecCCcchhhhhhhhcccccccc
Confidence 65554432221 3456666677755555432 2345788885433332222211 12334
Q ss_pred eEEEccCCCEEEEEeCCCCeEEEEE-eccccCcc-ceeecc------cCCCCCceEeCCCCCEEEEEcCCCc
Q 016318 239 GLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKAGN-LEAFAI------LPGYPDNVRTNEKGEFWVAIHCRRS 302 (391)
Q Consensus 239 gia~~~d~~~l~v~et~~~~I~~~~-~~g~~~g~-~~~~~~------~~g~p~~i~~d~~G~lwva~~~~~~ 302 (391)
+|+++..+-..+++-+.. +..+.| +...+... ...|.. ..--.+++++.++..+..+....+.
T Consensus 416 ava~~~~~asffvsvS~D-~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQD-CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred eeeecccCccEEEEecCC-ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 678877777777775544 444444 43321111 112210 0112567889888877655444443
No 273
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=5.9 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCcEEEEECC-CCeEEEeCCCCeeEEceec--------cCCCcccCCcceeecCCC-CEEEEe
Q 016318 142 TGDLYIADAY-FGLMKVGPEGGLATSLATE--------AEGVPLRFTNDLDIDDEG-NVYFTD 194 (391)
Q Consensus 142 ~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~--------~~~~~~~~~~~l~~d~~G-~ly~td 194 (391)
+|.||.--+. ..|.+++|++|++...... .+....+.+|+||.++++ ++|+|.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3566655444 4599999999987654321 122335689999999865 898886
No 274
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.64 E-value=32 Score=35.42 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=63.1
Q ss_pred ceEEEecCCCcEEEEECCC-C------eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318 134 LGLRFDKKTGDLYIADAYF-G------LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~-g------l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~ 206 (391)
.|+++. +|.|||..... | +.++|+.+++...+..-.. .+.--++++- +|.||+......
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~~l-~g~iYavGG~dg-------- 391 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVAVL-DGKLYAVGGFDG-------- 391 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeEEE-CCEEEEEecccc--------
Confidence 466665 57899986554 2 8899999888665432211 1111222222 788999863310
Q ss_pred eecccCCCceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEEEeCCC------CeEEEEEe
Q 016318 207 LVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGSV------GRLHKYWL 264 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v~et~~------~~I~~~~~ 264 (391)
...-..+-+|||.+.+......-.. ...|++. -+|. ||+..... ..+.+|+.
T Consensus 392 ----~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g~-iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 392 ----EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGGK-LYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred ----ccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECCE-EEEEcCcCCCccccceEEEEcC
Confidence 1112368999999998877653322 2223333 2454 88874311 34666663
No 275
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.40 E-value=18 Score=33.45 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEE
Q 016318 234 LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWV 295 (391)
Q Consensus 234 ~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwv 295 (391)
....|+|+|+|.-. .+++.. +.....+|=+.. ..+.......+.-...-+++.+|.+|+
T Consensus 251 VYaVNsi~FhP~hg-tlvTaG-sDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHG-TLVTAG-SDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred eEEecceEeecccc-eEEEec-CCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence 44568999999776 455534 344555552221 111222222333234456789999775
No 276
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=88.04 E-value=9 Score=38.13 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=55.7
Q ss_pred chhccccceecc-ccccCc-ceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecC-CCcccCCCCCCccccccccCc
Q 016318 54 KNLLQNSEIKFL-NQIQGP-ESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSN-NRSELCNPKPIATSYLKNEHI 129 (391)
Q Consensus 54 ~~~l~~~~~~~~-~~~~gP-e~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 129 (391)
++.-...+.++. ..-.|| -++++-++|...|++..||.|..|+.. ....+....+ .... .....
T Consensus 328 ~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~------------~l~Gh 395 (577)
T KOG0642|consen 328 KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG------------TLLGH 395 (577)
T ss_pred CccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc------------ceecc
Confidence 333334444443 123566 456777889999999999999999543 2111110000 0000 01112
Q ss_pred cCccceEEEecCCCcEEEEECCCCeEEEeCCCCe
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL 163 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~ 163 (391)
.+..++++++....+|..|++..-+.-+++....
T Consensus 396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ccceeeeeecccccceeeecCCceEEeeccCCcC
Confidence 3446788888766778888766667777766543
No 277
>PHA02790 Kelch-like protein; Provisional
Probab=87.87 E-value=18 Score=36.31 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=49.8
Q ss_pred CCcEEEEECC----CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318 142 TGDLYIADAY----FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV 217 (391)
Q Consensus 142 ~g~L~V~d~~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l 217 (391)
+|.|||.... ..+.++||.+++.+....... + ....-++.-+|.||+.. |..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~--r~~~~~~~~~~~IYv~G--------------------G~~ 417 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--P--HYKSCALVFGRRLFLVG--------------------RNA 417 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--c--cccceEEEECCEEEEEC--------------------Cce
Confidence 6899997432 236788999887776532211 1 11122333478999976 457
Q ss_pred EEEeCCCCeEEEeccCCCCc---ceEEEccCCCEEEEE
Q 016318 218 LKYDPTTKQTTVLLRNLQFP---NGLSLSKDKSFFVFC 252 (391)
Q Consensus 218 ~~~d~~~~~~~~~~~~~~~~---ngia~~~d~~~l~v~ 252 (391)
.+||+++++.+.+.. +..| .|+++- +++ ||+.
T Consensus 418 e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~~-IYvi 452 (480)
T PHA02790 418 EFYCESSNTWTLIDD-PIYPRDNPELIIV-DNK-LLLI 452 (480)
T ss_pred EEecCCCCcEeEcCC-CCCCccccEEEEE-CCE-EEEE
Confidence 789999998877642 3222 244432 444 7766
No 278
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.76 E-value=19 Score=37.30 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=88.1
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCc-cceEEEecCCCcEEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR-PLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-P~gi~~d~~~g~L~V~d 149 (391)
--++.++|||+.+-++.-|..+-.+-.+..+.|... +. ..- ..+|.+++ +..|.|+.
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL-------------------YG--HkLPV~smDIS~-DSklivTg 568 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL-------------------YG--HKLPVLSMDISP-DSKLIVTG 568 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee-------------------cc--cccceeEEeccC-CcCeEEec
Confidence 346789999998889999988777766544333211 00 111 34777777 56776654
Q ss_pred C-CCCeEEEeCCCCeeEE-ceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-e
Q 016318 150 A-YFGLMKVGPEGGLATS-LATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-Q 226 (391)
Q Consensus 150 ~-~~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~ 226 (391)
+ .+.+-.+..+=|..+. +-.+ + .....+.+-|+..++|+... ++.+-+||.+.= .
T Consensus 569 SADKnVKiWGLdFGDCHKS~fAH-d----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGDCHKSFFAH-D----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEE 626 (888)
T ss_pred cCCCceEEeccccchhhhhhhcc-c----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhh
Confidence 4 3555555444443332 1111 1 13466777888888888743 567778876432 2
Q ss_pred EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
+..+.........++++|+|.++ |+.+....|..+.
T Consensus 627 iq~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE 662 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWE 662 (888)
T ss_pred heeeccchheeeeeEEcCCCCeE-EeccCCceeEeee
Confidence 33344445577889999999944 5544444555544
No 279
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=87.16 E-value=1.9 Score=26.66 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=26.1
Q ss_pred cCccceEEEecCCCcEEEEECCCC-eEEEeCCCC
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGG 162 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g 162 (391)
...|.|+++|+.+++||.+|...+ |.+.+.++.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 467899999997788999998865 777776643
No 280
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=87.06 E-value=28 Score=33.00 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=78.7
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYF 152 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~ 152 (391)
+++.+|+.++..+|..|..-+.|+...-. ++ |. ..........+.|+. +|.|.+...-.
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge-~~---------~e----------ltgHKDSVt~~~Fsh-dgtlLATGdms 127 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGE-FA---------GE----------LTGHKDSVTCCSFSH-DGTLLATGDMS 127 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCc-ce---------eE----------ecCCCCceEEEEEcc-CceEEEecCCC
Confidence 45566766656666666666666544111 11 10 001123355677876 56655542224
Q ss_pred C-eEEEeCCCCeeEEceeccCCCcccCCcce---eecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 153 G-LMKVGPEGGLATSLATEAEGVPLRFTNDL---DIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 153 g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l---~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
| |+.+..+++..+.-... ..++| .-.|.+.+.++.+ .+|.++.|....+...
T Consensus 128 G~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALC 183 (399)
T ss_pred ccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCccee
Confidence 4 66666666543321110 12222 3355666666553 3688999987774444
Q ss_pred EeccCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 229 VLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 229 ~~~~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.+..+-. ..+.=.+.|||+.+....+ ++.|.+++++
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~k 220 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPK 220 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEec-CceEEEEecC
Confidence 4443332 3334457899997776644 6677777754
No 281
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=87.06 E-value=24 Score=36.50 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC----CcceEEEccCCCEEEEEe
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ----FPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~----~~ngia~~~d~~~l~v~e 253 (391)
-.++|++|+.-.+.++... +..|-.||.++++......+-+ .+--+.++|.|. |++.
T Consensus 598 TlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~at 658 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLAT 658 (1080)
T ss_pred eEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEE
Confidence 4577888876655555421 3457778887776665554332 344577888884 5554
Q ss_pred CC-CCeEEEEEec-cc----cCccceeecccCCCCCc---eEeCCCCCEEE
Q 016318 254 GS-VGRLHKYWLI-GE----KAGNLEAFAILPGYPDN---VRTNEKGEFWV 295 (391)
Q Consensus 254 t~-~~~I~~~~~~-g~----~~g~~~~~~~~~g~p~~---i~~d~~G~lwv 295 (391)
+. +..|..|+.. |+ ..|..|....+.-.+|. |.++.||-++|
T Consensus 659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence 43 4456667654 22 12333433322223443 67778887665
No 282
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=86.85 E-value=2 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=28.9
Q ss_pred EEEEEeCCCC-eEEEEEeccccCccceeecccCCCCCceEeCC
Q 016318 248 FFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 289 (391)
Q Consensus 248 ~l~v~et~~~-~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~ 289 (391)
.||++|.... +|.+.+++|.. ...++.+.-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEECC
Confidence 4999999999 99999998842 2233333334699999874
No 283
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=86.66 E-value=35 Score=37.12 Aligned_cols=143 Identities=17% Similarity=0.270 Sum_probs=86.9
Q ss_pred CccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeee
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~ 208 (391)
..|-++++|.-.+++|-.|.... +.+.+.++...+.+.... +..+..+++++ .|.+|+++.+. .
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~-~--------- 545 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ-P--------- 545 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----CCCccceeeccccCeeEEecCCC-C---------
Confidence 45778999976788999988765 455554544333333221 24688899998 68999999762 1
Q ss_pred cccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCC-eEEEEEeccccCccceeecccCCCCCceE
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVG-RLHKYWLIGEKAGNLEAFAILPGYPDNVR 286 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~-~I~~~~~~g~~~g~~~~~~~~~g~p~~i~ 286 (391)
.++.+-..+.....++. .+...|||++++-..+.+|+++.... .|.+....|.... .........|..++
T Consensus 546 ------~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 546 ------PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLS 617 (877)
T ss_pred ------chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEE
Confidence 12333222222222322 33678999999887777999988777 6888887764211 11112223566776
Q ss_pred eCCCCCEEE
Q 016318 287 TNEKGEFWV 295 (391)
Q Consensus 287 ~d~~G~lwv 295 (391)
+-.+.-+|.
T Consensus 618 ~~~~~iyw~ 626 (877)
T KOG1215|consen 618 VFEDYIYWT 626 (877)
T ss_pred EecceeEEe
Confidence 654443443
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=86.38 E-value=8.3 Score=36.71 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred cCccceEEEecCCCc-EEEEECCCCeEEEeCCCCe--eEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhhe
Q 016318 130 CGRPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGL--ATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFM 205 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~--~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~ 205 (391)
|.++..+...+ +++ |++++..+..+.++..+.. .+.+... .. ...++.+.+..+ -.+-+++.
T Consensus 62 ~~a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v--~~~~~ai~~~~~~~sv~v~dk---------- 127 (390)
T KOG3914|consen 62 SLAPALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CV--PKRPTAISFIREDTSVLVADK---------- 127 (390)
T ss_pred hccccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ec--ccCcceeeeeeccceEEEEee----------
Confidence 45555556655 455 5777777775444443221 2222111 11 124566655543 34555653
Q ss_pred eeecccCCCceEEEEeCCC---CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 206 QLVFSAEDTGRVLKYDPTT---KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.|-++.+|.-. +..+..+..+..-..|+++||+++|+.+|. ...|+..+..+
T Consensus 128 --------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa 182 (390)
T KOG3914|consen 128 --------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPA 182 (390)
T ss_pred --------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecCc
Confidence 24455555322 445555555667778999999998887754 55677766544
No 285
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.26 E-value=29 Score=32.37 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=21.5
Q ss_pred ccccCcceEEEccCCCeeEEEe-cCCEEEEEeC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGV-ADGRILFWDG 97 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~-~~g~I~~~~~ 97 (391)
..+..|-+|++.|.|- +|++. ..+..-.++.
T Consensus 20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg 51 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVG 51 (336)
T ss_pred ccccccceeEecCCCC-EEEecCCcceEEeecC
Confidence 3477899999999887 66654 4455555554
No 286
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=86.20 E-value=31 Score=32.70 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=87.9
Q ss_pred cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 65 LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 65 ~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
-|-+.+--++...|.-+.++++..|..+..||.. +...+. .+... +-...+.+-+-+.
T Consensus 232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-l~GH~--------------------~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-LSGHT--------------------NPVASVMCQPTDP 290 (460)
T ss_pred ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-ecCCC--------------------CcceeEEeecCCC
Confidence 4667788888888877889999999888888765 222221 11110 1112333433356
Q ss_pred cEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
.++-+....-|...|...|+--.-.+.. -.....++..|+-+++.+.+. ..+-+++..
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt~h----kksvral~lhP~e~~fASas~------------------dnik~w~~p 348 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLTHH----KKSVRALCLHPKENLFASASP------------------DNIKQWKLP 348 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeeecc----cceeeEEecCCchhhhhccCC------------------ccceeccCC
Confidence 7777766666777777655322111111 134667788888777666543 234444433
Q ss_pred CCeEEEeccC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 224 TKQTTVLLRN-LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 224 ~~~~~~~~~~-~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.|+...-..+ -...|.++...|+ ++++...++.|+.++.+
T Consensus 349 ~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 349 EGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred ccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecC
Confidence 3333221111 1234556666666 77887777788887654
No 287
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.12 E-value=15 Score=37.34 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=88.5
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
+-.+|+.-.+|+.+..++.|-.|..|+...-..+ |.. ..-....+..++++-..+..|.+ .
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~----------c~s--------tir~H~DYVkcla~~ak~~~lva-S 135 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF----------CMS--------TIRTHKDYVKCLAYIAKNNELVA-S 135 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcch----------hHh--------hhhcccchheeeeecccCceeEE-e
Confidence 4456666667877888999988888877511011 210 00011345667777332444544 4
Q ss_pred CC--CCeEEEeCCCCeeEEceec-------cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 150 AY--FGLMKVGPEGGLATSLATE-------AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 150 ~~--~gl~~~d~~~g~~~~~~~~-------~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
++ +.|+.+|..++..+.+.+. ....+....+.+|..+.|.+.++... .+-|..|
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-----------------ek~lr~w 198 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-----------------EKDLRLW 198 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-----------------ccceEEe
Confidence 44 3488888887743222210 11023446677888888877777532 3557778
Q ss_pred eCCCCeEE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 221 DPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 221 d~~~~~~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
|+.+++-. .+...-.....+.++.||+.++ +.+..+.|..+++
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdL 242 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDL 242 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeec
Confidence 98876433 3332222344677788887554 4355555555554
No 288
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.02 E-value=43 Score=34.22 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=85.6
Q ss_pred eEEE-ccCCCeeEEEecCCEEEEEeCCce-e-EEEeecCCCcccCCCC-CCccccccccCccCccceEEEecCCCcEEEE
Q 016318 73 SMAF-DPLGRGPYTGVADGRILFWDGLKW-T-DFAFTSNNRSELCNPK-PIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 73 ~i~~-d~~G~~ly~~~~~g~I~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
+++. .++..++.+|.-|++|..|+-... . ..+.. +....|+.. |+ ......++..+ .+.++|+
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~--n~~t~~sl~sG~----------k~siYSLA~N~-t~t~ivs 188 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF--NNVTVNSLGSGP----------KDSIYSLAMNQ-TGTIIVS 188 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhc--cccccccCCCCC----------ccceeeeecCC-cceEEEe
Confidence 4555 456665666778899999987621 1 11111 100112110 10 11123555554 5667776
Q ss_pred ECCCC-eEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 149 DAYFG-LMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 149 d~~~g-l~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
..-.+ |..+|+.+++.. .+..+. .....+.+++||+-.++.++ +|.|-.||..-.+
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHT-----dNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHT-----DNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQR 246 (735)
T ss_pred cCcccceEEeccccccceeeeeccc-----cceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccc
Confidence 54444 778899886422 222221 24677888999987788766 5677777764322
Q ss_pred EE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 227 TT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 227 ~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
.. .+.-.-.....++.+++=+.+|.+ ...+.|+|-++...
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG-~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSG-GRDGNIYRTDLRNP 287 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEec-CCCCcEEecccCCc
Confidence 11 111111124455566666657666 34567888877654
No 289
>PHA03098 kelch-like protein; Provisional
Probab=85.85 E-value=43 Score=33.98 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=43.3
Q ss_pred CCcEEEEECCC------CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318 142 TGDLYIADAYF------GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 142 ~g~L~V~d~~~------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
++.|||..... .+.++|+.+++.+........ .. ..-+..-+|.||+...... ......
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~---r~-~~~~~~~~~~iYv~GG~~~-----------~~~~~~ 406 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP---RY-NPCVVNVNNLIYVIGGISK-----------NDELLK 406 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC---Cc-cceEEEECCEEEEECCcCC-----------CCcccc
Confidence 57888865432 278899988877654322111 11 1122234678999753110 001135
Q ss_pred eEEEEeCCCCeEEEec
Q 016318 216 RVLKYDPTTKQTTVLL 231 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~ 231 (391)
.+.+||+.+++...+.
T Consensus 407 ~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 407 TVECFSLNTNKWSKGS 422 (534)
T ss_pred eEEEEeCCCCeeeecC
Confidence 6899999998887654
No 290
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.60 E-value=40 Score=33.44 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.|.++..+|+|+.+.+ ..+|.-..+....++.-. .|.....+|.. +++.-|-+
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------------------------~G~g~~~vw~~-~n~yAv~~ 86 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------------FGSGLSFVWSS-RNRYAVLE 86 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------------------------EEE-SEEEE-T-SSEEEEE-
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------------------------cCceeEEEEec-CccEEEEE
Confidence 5999999999995555 556655555433332221 12334556665 55555555
Q ss_pred CCCCeEEE-eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 150 AYFGLMKV-GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 150 ~~~gl~~~-d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
....|..+ +.+....+.+..+ ..+.+|-- |.+....+ ++.|..||.++++..
T Consensus 87 ~~~~I~I~kn~~~~~~k~i~~~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i 139 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVVKSIKLP------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLI 139 (443)
T ss_dssp TTS-EEEEETTEE-TT-----S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EE
T ss_pred CCCeEEEEEcCccccceEEcCC------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHccee
Confidence 43333332 2211110111000 01222222 66555543 246999999887654
Q ss_pred EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.-.+. .....|.++++++.+.+.....--|.+++.+
T Consensus 140 ~~i~v-~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 140 RRIDV-SAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp EEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred eEEec-CCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 33221 1237899999999777764333345566554
No 291
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=85.35 E-value=12 Score=33.95 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=78.4
Q ss_pred eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC--eEEEeCC
Q 016318 83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG--LMKVGPE 160 (391)
Q Consensus 83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g--l~~~d~~ 160 (391)
+.+|...|.++.|+-..-..+...... ...|.+ ........+.+.+++..++=..+..... .+.++-+
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~-~kv~~~---------~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQS-SKVESP---------NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccc-cccccc---------hhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 456778899999987621222222111 112221 1112344556666653222223323333 3444555
Q ss_pred CCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcce
Q 016318 161 GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNG 239 (391)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ng 239 (391)
++..+.-... ..+.-..+++.+-+|+.|..|. + -++|+-.|+..+.+.-.+. ..-...|.
T Consensus 238 ~gslq~~~e~--~lknpGv~gvrIRpD~KIlATA-G----------------WD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 238 TGSLQIRKEI--TLKNPGVSGVRIRPDGKILATA-G----------------WDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred cCcccccceE--EecCCCccceEEccCCcEEeec-c----------------cCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 5543321110 0111246788899999998775 2 2467777776665543322 22246789
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEE
Q 016318 240 LSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 240 ia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
+|++||-. +..+.+...||..+.
T Consensus 299 vAfspd~~-lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 299 VAFSPDCE-LMAAASKDARISLWK 321 (323)
T ss_pred EEeCCCCc-hhhhccCCceEEeee
Confidence 99999966 555556666765543
No 292
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=6.6 Score=37.31 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCC
Q 016318 212 EDTGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE 289 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~ 289 (391)
...+.+-.||+..++--+..-.+ ..-..+.+.|++++||++++ .+.+..|++.+.+... ..|....|.+.+|.+.+
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g-~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG-CGLKGITGSIRSIHCHP 300 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec-cccCCccCCcceEEEcC
Confidence 34578889999865433332121 22356788999999999965 5689999877643211 12445678899999999
Q ss_pred CCCEEEEEcCCC
Q 016318 290 KGEFWVAIHCRR 301 (391)
Q Consensus 290 ~G~lwva~~~~~ 301 (391)
.+.+.....-.|
T Consensus 301 ~~~~las~GLDR 312 (412)
T KOG3881|consen 301 THPVLASCGLDR 312 (412)
T ss_pred CCceEEeeccce
Confidence 887776554443
No 293
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.71 E-value=17 Score=34.79 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.1
Q ss_pred cEEEEECCC---CeEEEeCCCCeeEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318 144 DLYIADAYF---GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK 219 (391)
Q Consensus 144 ~L~V~d~~~---gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~ 219 (391)
-||+.. .. +|+.++.+++..+.+... . ...-.-+.+|++ +.|||+.... ....-.|++
T Consensus 250 ~l~~s~-~~G~~hly~~~~~~~~~~~lT~G---~-~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~ 311 (353)
T PF00930_consen 250 FLWISE-RDGYRHLYLYDLDGGKPRQLTSG---D-WEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYR 311 (353)
T ss_dssp EEEEEE-TTSSEEEEEEETTSSEEEESS-S---S-S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEE
T ss_pred EEEEEE-cCCCcEEEEEcccccceeccccC---c-eeecccceEcCCCCEEEEEecCC-------------CCCceEEEE
Confidence 356665 43 399999999887765422 1 111123456775 4799987541 112346999
Q ss_pred EeCC-CCeEEEeccCCCCcceEEEccCCCEEEEE
Q 016318 220 YDPT-TKQTTVLLRNLQFPNGLSLSKDKSFFVFC 252 (391)
Q Consensus 220 ~d~~-~~~~~~~~~~~~~~ngia~~~d~~~l~v~ 252 (391)
.+.+ +++.+.+......-..++++||++++...
T Consensus 312 v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 9998 88887776443333489999999965443
No 294
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=84.31 E-value=0.81 Score=28.24 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=17.2
Q ss_pred cCCcceeecCCCCEEEEeCC
Q 016318 177 RFTNDLDIDDEGNVYFTDSS 196 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~ 196 (391)
..+++|++|++|++|++..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 36899999999999999744
No 295
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=84.06 E-value=41 Score=32.24 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=98.0
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAY 151 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~ 151 (391)
..|.|..+|+.+..|..|-++..|+.++.-.-....+ .+ +.-++.-....+++|+..+..||-+...
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP--------I~-----~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP--------IG-----VMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC--------ce-----eccCccccceEEEEEccCCeeEecCCCc
Confidence 4667888888666666666666665541100000000 00 0112223456789998733335544333
Q ss_pred CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe----E
Q 016318 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ----T 227 (391)
Q Consensus 152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~ 227 (391)
..+.+-|..+.+.-.+....+ .-.-.++|.+.|-.+++++.+. .++|..+|....+ .
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~P~DN~~~~~t~-----------------~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN--NRGDVYHMDQHPTDNTLIVVTR-----------------AKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccC--cccceeecccCCCCceEEEEec-----------------CceEEEEeccCCCCCCce
Confidence 347777777654333322221 1124677888887777776543 4778888865443 1
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec--ccCCCC------CceEeCCCCCEEEEEcC
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA--ILPGYP------DNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~--~~~g~p------~~i~~d~~G~lwva~~~ 299 (391)
..+......-..+.+.|..-.|+.+...+..+-.+++.-+ ...++. ...|+| .+...+++|+-+.+...
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~---~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ---ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc---cchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 1111111122345677766555555555555555543221 111221 122333 35677888887777654
Q ss_pred C
Q 016318 300 R 300 (391)
Q Consensus 300 ~ 300 (391)
.
T Consensus 265 ~ 265 (609)
T KOG4227|consen 265 G 265 (609)
T ss_pred c
Confidence 4
No 296
>PHA02790 Kelch-like protein; Provisional
Probab=83.41 E-value=52 Score=32.98 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=55.7
Q ss_pred CCcEEEEECC---CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEE
Q 016318 142 TGDLYIADAY---FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVL 218 (391)
Q Consensus 142 ~g~L~V~d~~---~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~ 218 (391)
+|.||+.... ..+.++|+.+++.+.+..... .....-++.-+|.||+..... .....+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~----~r~~~~~~~~~g~IYviGG~~--------------~~~~~ve 379 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK----PRCNPAVASINNVIYVIGGHS--------------ETDTTTE 379 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC----CCcccEEEEECCEEEEecCcC--------------CCCccEE
Confidence 6889987543 237888988877665532111 111222333478999986321 0123578
Q ss_pred EEeCCCCeEEEeccCCCCcc--eEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 219 KYDPTTKQTTVLLRNLQFPN--GLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 219 ~~d~~~~~~~~~~~~~~~~n--gia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
+|||++.+..... .+..|. ..+..-+++ ||+.. +...+|+.
T Consensus 380 ~ydp~~~~W~~~~-~m~~~r~~~~~~~~~~~-IYv~G---G~~e~ydp 422 (480)
T PHA02790 380 YLLPNHDQWQFGP-STYYPHYKSCALVFGRR-LFLVG---RNAEFYCE 422 (480)
T ss_pred EEeCCCCEEEeCC-CCCCccccceEEEECCE-EEEEC---CceEEecC
Confidence 9999998887653 232221 112223554 88873 34566764
No 297
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=83.00 E-value=6.8 Score=36.96 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=79.8
Q ss_pred ceEEEccCC-CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 72 ESMAFDPLG-RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 72 e~i~~d~~G-~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
.++-+.+-. .+|-++..|+.|+.+|.-+-..+.. ....-|+.+|++.|+.-+.-+|+.
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K---------------------Vi~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKK---------------------VILTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccce---------------------eeeeccccceecCccccceeeccc
Confidence 345555433 3344445778888887652221111 112456778888883333444555
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL 230 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 230 (391)
...||.+|...= -+.+. ...+ ..+...++++.|.|.=+++.+- +..|-.|....+..+-+
T Consensus 250 D~nlY~~DmR~l-~~p~~-v~~d-hvsAV~dVdfsptG~Efvsgsy-----------------DksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 250 DHNLYTYDMRNL-SRPLN-VHKD-HVSAVMDVDFSPTGQEFVSGSY-----------------DKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cccceehhhhhh-cccch-hhcc-cceeEEEeccCCCcchhccccc-----------------cceEEEeecCCCcchhh
Confidence 567888886521 11111 1111 1234567888899987777654 12333333333433332
Q ss_pred --ccCCCCcceEEEccCCCEEEEEeC-CCCeEEEEE
Q 016318 231 --LRNLQFPNGLSLSKDKSFFVFCEG-SVGRLHKYW 263 (391)
Q Consensus 231 --~~~~~~~ngia~~~d~~~l~v~et-~~~~I~~~~ 263 (391)
...++..-+|.++-|.++++-... .+-|+|+-.
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 234566678999999996654322 223666654
No 298
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=57 Score=32.61 Aligned_cols=172 Identities=16% Similarity=0.048 Sum_probs=92.7
Q ss_pred CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC-CCCeEEE
Q 016318 79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA-YFGLMKV 157 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~-~~gl~~~ 157 (391)
++..+-+|+.++.|..++-........ ..........|+.+.+ +++...... .+.++.+
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~-------------------~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVS-------------------TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW 328 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhh-------------------hhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence 455567778888887775431000000 0111233456788887 555544322 2447777
Q ss_pred eCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCC
Q 016318 158 GPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQF 236 (391)
Q Consensus 158 d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~ 236 (391)
|.............. .....++..| ..+|..+.. +..++.+..+|..+++...-.+.-..
T Consensus 329 d~~~~~p~~~~~~H~----aAVKA~awcP~q~~lLAsGG---------------Gs~D~~i~fwn~~~g~~i~~vdtgsQ 389 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHT----AAVKALAWCPWQSGLLATGG---------------GSADRCIKFWNTNTGARIDSVDTGSQ 389 (484)
T ss_pred cCCCccccEEEeccc----eeeeEeeeCCCccCceEEcC---------------CCcccEEEEEEcCCCcEecccccCCc
Confidence 764322222112211 1345567777 345555543 34467788899988877665555567
Q ss_pred cceEEEccCCCEEEEEeC-CCC--eEEEEEeccccCccceeecccCCCC---CceEeCCCCCEEEE
Q 016318 237 PNGLSLSKDKSFFVFCEG-SVG--RLHKYWLIGEKAGNLEAFAILPGYP---DNVRTNEKGEFWVA 296 (391)
Q Consensus 237 ~ngia~~~d~~~l~v~et-~~~--~I~~~~~~g~~~g~~~~~~~~~g~p---~~i~~d~~G~lwva 296 (391)
...+.+++..+-+..+-- ..+ .||+|. . ......+.|.. -.++.+++|...+.
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~p----s---~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYP----S---MKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEecc----c---cceeeeecCCcceeEEEEECCCCCEEEE
Confidence 778999998876665532 223 566662 1 12222233322 24677888874443
No 299
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=81.64 E-value=32 Score=31.80 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred CccCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhhee
Q 016318 128 HICGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 128 ~~~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~ 206 (391)
...|...-+.|+| +|.+++.... ..|+..+..+. .+-+.... + -.....++...+||+..++.+.
T Consensus 45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lk-g-HsgAVM~l~~~~d~s~i~S~gt---------- 110 (338)
T KOG0265|consen 45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD-CENFWVLK-G-HSGAVMELHGMRDGSHILSCGT---------- 110 (338)
T ss_pred CCcceEEEEEECC-CCCeEeecCCcceEEEEecccc-ccceeeec-c-ccceeEeeeeccCCCEEEEecC----------
Confidence 3456678889999 7888877554 34666664432 23222110 1 1124567777889988887643
Q ss_pred eecccCCCceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 207 LVFSAEDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+-++..||.++|+... ....-.+.|.++...-|-.+..+.+..+.+..+++.
T Consensus 111 -------Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 111 -------DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred -------CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 5689999999887543 334445777777655666566665556667777654
No 300
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.22 E-value=47 Score=30.96 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=55.0
Q ss_pred eEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeCCC
Q 016318 83 PYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEG 161 (391)
Q Consensus 83 ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~ 161 (391)
+..+..||.|..|+.+.|....... ...++..+++++| .+.|-++-.+.+ +-.+|.-.
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK--------------------~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLK--------------------AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeec--------------------ccccccceeEecC-CCceEEEEcCCceeeeehhhc
Confidence 8889999999999988886654322 1246688999999 788877765555 44556655
Q ss_pred CeeEEceeccCCCcccCCcceeecCCCC-EEEEe
Q 016318 162 GLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTD 194 (391)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~~l~~d~~G~-ly~td 194 (391)
|+....... -..+.-+..++.|. +++..
T Consensus 159 Gr~a~v~~L-----~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 159 GRVAFVLNL-----KNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred Cccceeecc-----CCcceeeEEcCCCCEEEEEe
Confidence 543322111 11334477788886 44443
No 301
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=80.50 E-value=43 Score=30.10 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=60.4
Q ss_pred cceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeCCCcccchhheeeeccc
Q 016318 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFMQLVFSA 211 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~~~~~~~ 211 (391)
...|-+||.++.++.+....-++.+|.++|+++...+... .+...++- ..++.|.- +
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qils------------------G 174 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQILS------------------G 174 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcceee------------------c
Confidence 4678899877888887644449999999999886544321 13444443 33444433 3
Q ss_pred CCCceEEEEeCCCCeEEEeccCCCCc------ce---EEEccCCCEEEEE
Q 016318 212 EDTGRVLKYDPTTKQTTVLLRNLQFP------NG---LSLSKDKSFFVFC 252 (391)
Q Consensus 212 ~~~g~l~~~d~~~~~~~~~~~~~~~~------ng---ia~~~d~~~l~v~ 252 (391)
..+|.+-.+|.++++-....+....+ +| .|++-+++++...
T Consensus 175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG 224 (325)
T KOG0649|consen 175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG 224 (325)
T ss_pred CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec
Confidence 34688888999888765554332222 22 4566677755444
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.58 E-value=77 Score=32.44 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred ccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC
Q 016318 64 FLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG 143 (391)
Q Consensus 64 ~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g 143 (391)
++|.-+.-..+++.|.=-++.+|+.||.+..|+...++.-. ...-...|..+|+-.+.++
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~--------------------tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK--------------------TLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh--------------------hhhcCCceEEEEeecCCCC
Confidence 35666677788888887788899999988888665222110 0011256777777766344
Q ss_pred cEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 144 DLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 144 ~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
++-|+ ...|...+..-.+ . -.+..|+.|.|.++..+...+-. +..+ + -..+..
T Consensus 283 ~i~vG-~Deg~i~v~lgre-----------e-----P~vsMd~~gKIiwa~~~ei~~~~--~ks~------~--~~~ev~ 335 (794)
T KOG0276|consen 283 KIAVG-FDEGSVTVKLGRE-----------E-----PAVSMDSNGKIIWAVHSEIQAVN--LKSV------G--AQKEVT 335 (794)
T ss_pred eEEEe-ccCCcEEEEccCC-----------C-----CceeecCCccEEEEcCceeeeee--ceec------c--Cccccc
Confidence 44444 3445444432211 0 12456777877776644211100 0000 0 001122
Q ss_pred CCeEEEe-----ccCCCCcceEEEccCCCEEEEEeCCCCeEEE
Q 016318 224 TKQTTVL-----LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHK 261 (391)
Q Consensus 224 ~~~~~~~-----~~~~~~~ngia~~~d~~~l~v~et~~~~I~~ 261 (391)
+|+.-.+ -..--+|..++-+|+|+++.|+..+...|+.
T Consensus 336 DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 336 DGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred CCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 2322121 1222478888899999988887655444443
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=79.51 E-value=5.5 Score=23.87 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=24.6
Q ss_pred ccCcceEEEccCCCeeEEEecCCEEEEEe
Q 016318 68 IQGPESMAFDPLGRGPYTGVADGRILFWD 96 (391)
Q Consensus 68 ~~gPe~i~~d~~G~~ly~~~~~g~I~~~~ 96 (391)
-....+|++.++++.+.++..|+.|..|+
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34667899999999999999999988774
No 304
>KOG4328 consensus WD40 protein [Function unknown]
Probab=78.94 E-value=15 Score=35.71 Aligned_cols=110 Identities=7% Similarity=0.030 Sum_probs=62.3
Q ss_pred eEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.|..+++.+++++.....-.+|..++.-+...-... -+..++|++.|----|+++.+. +
T Consensus 284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh---~kKI~sv~~NP~~p~~laT~s~----------------D 344 (498)
T KOG4328|consen 284 SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH---KKKITSVALNPVCPWFLATASL----------------D 344 (498)
T ss_pred eccccCCCccEEEeecccceEEEEeecCCccchhhhhh---hcccceeecCCCCchheeeccc----------------C
Confidence 34455556778888776656677776554322111111 1257888998866555555442 2
Q ss_pred ceEEEEeCCCCeEE--Eec---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 215 GRVLKYDPTTKQTT--VLL---RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 215 g~l~~~d~~~~~~~--~~~---~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
+.+-.||...-.-+ .+. ..-...|...++|.+-. +++....+.|..|+.
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 34445664321111 111 11234577889999876 556567788998874
No 305
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=78.22 E-value=53 Score=29.80 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=47.9
Q ss_pred eEEEEeCCCCeEEEeccC-------CCCcceEEEccCC---C-EEEEEeCCCCeEEEEEeccccCccce--eec--ccCC
Q 016318 216 RVLKYDPTTKQTTVLLRN-------LQFPNGLSLSKDK---S-FFVFCEGSVGRLHKYWLIGEKAGNLE--AFA--ILPG 280 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~~~-------~~~~ngia~~~d~---~-~l~v~et~~~~I~~~~~~g~~~g~~~--~~~--~~~g 280 (391)
.++.+||+++.++.+.+. ...+.|+++..+. . +++|+ ...+-|..|.+-....|+.. ... .+|.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~-~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t 205 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVN-RRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT 205 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEe-cCCCceeEEEEEecCCceEcceeeEeeecCC
Confidence 367788888877766543 4567888876543 3 34444 34467777776533223221 111 2333
Q ss_pred CCCceEe-CCCCCEEEEEcC
Q 016318 281 YPDNVRT-NEKGEFWVAIHC 299 (391)
Q Consensus 281 ~p~~i~~-d~~G~lwva~~~ 299 (391)
.-.++.. |+-|.+|++...
T Consensus 206 QTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED 225 (364)
T ss_pred cccceeeccccceEEEeecc
Confidence 4455554 567889998543
No 306
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.18 E-value=27 Score=34.89 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=57.2
Q ss_pred EEEECCCCeEEEeCCCCeeEEceeccCCC---cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 146 YIADAYFGLMKVGPEGGLATSLATEAEGV---PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 146 ~V~d~~~gl~~~d~~~g~~~~~~~~~~~~---~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
+|+-..++|+++||.-.....+. ..++. .-...+.++...+|.|-++.- .|.|-.||.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~-~~q~kqy~~k~nFsc~aTT~sG~IvvgS~------------------~GdIRLYdr 458 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLA-VVQSKQYSTKNNFSCFATTESGYIVVGSL------------------KGDIRLYDR 458 (644)
T ss_pred EEeecCCceEEecccccCcceee-eeeccccccccccceeeecCCceEEEeec------------------CCcEEeehh
Confidence 34445567888887521111111 01111 123445566777787777653 367778887
Q ss_pred CCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 223 TTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
-..+.++...++..| .+|.++.||++|+. |...-|..++.
T Consensus 459 i~~~AKTAlPgLG~~I~hVdvtadGKwil~--Tc~tyLlLi~t 499 (644)
T KOG2395|consen 459 IGRRAKTALPGLGDAIKHVDVTADGKWILA--TCKTYLLLIDT 499 (644)
T ss_pred hhhhhhhcccccCCceeeEEeeccCcEEEE--ecccEEEEEEE
Confidence 666677777777544 58999999996644 33445555554
No 307
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.05 E-value=69 Score=30.47 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=83.3
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
|.-.+-.++++-|.|+.+..++.|..|..|+-+ .+......+.. -...-+++.. +|.
T Consensus 191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~---------------------ewvr~v~v~~-DGt 248 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS---------------------EWVRMVRVNQ-DGT 248 (406)
T ss_pred CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch---------------------HhEEEEEecC-Cee
Confidence 444566788888999988889999999888776 33333221100 1123344544 566
Q ss_pred EEEEECC-CCeEEEeCCCCeeEEceeccCC-------Cccc-CCcceeecC--CC-CEEEEeCCCcccchhheeeecccC
Q 016318 145 LYIADAY-FGLMKVGPEGGLATSLATEAEG-------VPLR-FTNDLDIDD--EG-NVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 145 L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~-------~~~~-~~~~l~~d~--~G-~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
|+.+... ..|...-..+++.+...+..+- .+.. +|+--...+ +| .+.++ +.
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s-----------------~S 311 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS-----------------GS 311 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe-----------------ec
Confidence 6655433 2333333333322221111110 0000 111111111 12 22222 23
Q ss_pred CCceEEEEeCCCCeEE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 213 DTGRVLKYDPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
.++.+-.+|..++..- ++.....-..|++++|.|++|+=+ ..+..+..++++.
T Consensus 312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~ 365 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKN 365 (406)
T ss_pred ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEecc
Confidence 3566777888877543 333445567899999999977644 4455666666553
No 308
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.01 E-value=65 Score=30.17 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=46.2
Q ss_pred CCcEEEEECCC-----CeEEEeCCCCeeEEceeccCC-CcccCCcce-eecCCCCEEEEeCCCcccchh-----------
Q 016318 142 TGDLYIADAYF-----GLMKVGPEGGLATSLATEAEG-VPLRFTNDL-DIDDEGNVYFTDSSTNYQRRN----------- 203 (391)
Q Consensus 142 ~g~L~V~d~~~-----gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~l-~~d~~G~ly~td~~~~~~~~~----------- 203 (391)
++.|||..... .++++|+++.+.+.+.....+ .+....... ++-.++.||+......-...+
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 250 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDE 250 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccch
Confidence 67899864332 367999999888776432111 111111111 223367899885332111000
Q ss_pred --------heeeeccc-CCCceEEEEeCCCCeEEEec
Q 016318 204 --------FMQLVFSA-EDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 204 --------~~~~~~~~-~~~g~l~~~d~~~~~~~~~~ 231 (391)
++..-.+. .-+..+++||+.+.+.+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 251 SLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 00000010 01346999999999887764
No 309
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.96 E-value=37 Score=35.43 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCceEEEEeCCC----CeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 213 DTGRVLKYDPTT----KQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 213 ~~g~l~~~d~~~----~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
.+|.|.+||... ++..++.+.-...|.+.+++-+-.++++.+..+.|..+++.-.+ ....|.......+.+.+.
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccchhhhceeec
Confidence 368899999753 22233445556788999999888899998888889999876432 112221111123334443
Q ss_pred C-CCCEEEEEcCCCchhhhhh
Q 016318 289 E-KGEFWVAIHCRRSLYSHLM 308 (391)
Q Consensus 289 ~-~G~lwva~~~~~~~~~~~l 308 (391)
+ .++.+++...+..+.+|.|
T Consensus 186 p~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred cCCCceEEEecCCceEEEeec
Confidence 2 3556666666555444433
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.89 E-value=97 Score=32.09 Aligned_cols=153 Identities=11% Similarity=0.004 Sum_probs=80.1
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-----CCcEE
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-----TGDLY 146 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-----~g~L~ 146 (391)
.+.+...||..+..|..+|.|-.-+...-....... +.|+ .....++++.+. ++.+-
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R--------pgg~----------Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER--------PGGS----------NSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC--------CCCC----------CCCceEEEecCCCCCCccceEE
Confidence 356677899988889999988766544111110000 0000 112345665542 23577
Q ss_pred EEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 147 IADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 147 V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
|.|+...+--+..++..+..-.. -..-|..+..-++|.......+ ++.+-.|..++-.
T Consensus 198 V~DW~qTLSFy~LsG~~Igk~r~-----L~FdP~CisYf~NGEy~LiGGs-----------------dk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSGKQIGKDRA-----LNFDPCCISYFTNGEYILLGGS-----------------DKQLSLFTRDGVR 255 (1081)
T ss_pred EEeccceeEEEEecceeeccccc-----CCCCchhheeccCCcEEEEccC-----------------CCceEEEeecCeE
Confidence 78877666555555433221100 0112444444556654433322 4556556554434
Q ss_pred EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 227 TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 227 ~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
..++.+.-.-...|++.|+++++.+. ...+.|-.|++.
T Consensus 256 LGTvg~~D~WIWtV~~~PNsQ~v~~G-CqDGTiACyNl~ 293 (1081)
T KOG1538|consen 256 LGTVGEQDSWIWTVQAKPNSQYVVVG-CQDGTIACYNLI 293 (1081)
T ss_pred EeeccccceeEEEEEEccCCceEEEE-EccCeeehhhhH
Confidence 44444433345678889998866554 556677777654
No 311
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.40 E-value=4.8 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=18.7
Q ss_pred CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEE
Q 016318 186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTT 228 (391)
Q Consensus 186 ~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~ 228 (391)
.+|.+|+++. +|.++.+|.++|+..
T Consensus 5 ~~~~v~~~~~------------------~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGST------------------DGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcC------------------CCEEEEEEcccCcEE
Confidence 3667888764 478999999887753
No 312
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=76.23 E-value=3.1 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=16.9
Q ss_pred cCcceEEEccCCCeeEEEecCC
Q 016318 69 QGPESMAFDPLGRGPYTGVADG 90 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g 90 (391)
..|.+|++|++|+++.+|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3588999999999666666554
No 313
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.89 E-value=74 Score=30.27 Aligned_cols=128 Identities=14% Similarity=0.069 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC--CeEEE
Q 016318 152 FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT--KQTTV 229 (391)
Q Consensus 152 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~~~~~ 229 (391)
.-|..+|..+|+++.-.... .....+|+++..|.+.++.++. . .+..+|-++ ...+.
T Consensus 130 ~tikv~D~~tg~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsD-l----------------~~~LWd~~~~~~c~ks 188 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGH----TDSVFDISFDASGKYLATCSSD-L----------------SAKLWDFDTFFRCIKS 188 (406)
T ss_pred ceEEEEEccchhhhhhhhcc----ccceeEEEEecCccEEEecCCc-c----------------chhheeHHHHHHHHHH
Confidence 34888888888764322211 2347899999999877776541 1 122233221 01111
Q ss_pred eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCC---CCceEeCCCCCEEEEEcCCCchhhh
Q 016318 230 LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGY---PDNVRTNEKGEFWVAIHCRRSLYSH 306 (391)
Q Consensus 230 ~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~---p~~i~~d~~G~lwva~~~~~~~~~~ 306 (391)
+...-.....+++-|-|++|. +....+.|...+.+.. -... ++++. ..-+++..||.+..+......+.+|
T Consensus 189 ~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg--~cv~---t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 189 LIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTG--YCVK---TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred hcCcccceeeEEEEecCCeee-ecccccceeEEecccc--eeEE---eccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 111122334567777777554 3344556655544321 1112 23333 3456778888877765555444333
No 314
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=75.67 E-value=1.1e+02 Score=32.27 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCC
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~ 256 (391)
..+++++..+|....+. ...+-+.++..+|++ +++...+..| .+++++||++. |-.-...
T Consensus 253 ~V~~L~fS~~G~~LlSG-----------------G~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~-~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSG-----------------GREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDL-YSLVLED 313 (792)
T ss_pred ccceeEEecCCceEeec-----------------ccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCe-EEEEecC
Confidence 46788888888544443 224678889888888 7777776554 58999999984 4443667
Q ss_pred CeEEEEEeccccC----ccceee----cc-cCCCCCceEeCCCCC
Q 016318 257 GRLHKYWLIGEKA----GNLEAF----AI-LPGYPDNVRTNEKGE 292 (391)
Q Consensus 257 ~~I~~~~~~g~~~----g~~~~~----~~-~~g~p~~i~~d~~G~ 292 (391)
+.|..+....-.. ...+.. .. ..+++.++++|+.-+
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 8888876532110 001111 11 235677888888443
No 315
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=74.89 E-value=1e+02 Score=31.41 Aligned_cols=95 Identities=11% Similarity=0.223 Sum_probs=53.5
Q ss_pred hheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc-cCC
Q 016318 203 NFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI-LPG 280 (391)
Q Consensus 203 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~-~~g 280 (391)
+|+-.++-...+-+++.++...+...... ..-..+..+.|+|-.-+++|+. .+.|..|++.- .+.... ++|
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~k-----qelvKkL~tg 606 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSK-----QELVKKLLTG 606 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhH-----HHHHHHHhcC
Confidence 45544554455567777776544333221 1123466788999998899984 45677777642 122222 223
Q ss_pred --CCCceEeCCCCC-EEEEEcCCCchh
Q 016318 281 --YPDNVRTNEKGE-FWVAIHCRRSLY 304 (391)
Q Consensus 281 --~p~~i~~d~~G~-lwva~~~~~~~~ 304 (391)
....|++++.|. +.++....+..+
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 345677777664 666655544433
No 316
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=74.23 E-value=29 Score=32.36 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred Cccchhccccceec--cccccCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCcccccccc
Q 016318 51 KDDKNLLQNSEIKF--LNQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNE 127 (391)
Q Consensus 51 ~~~~~~l~~~~~~~--~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (391)
+......+.+.+.+ .|--.+-.+.+|+++...+.+.+.||.+..||.+ ... ....+ .+. ........
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~--~~qDp---k~L-----k~g~~pl~ 328 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE--AGQDP---KIL-----KEGSAPLH 328 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe--cCCCc---hHh-----hcCCcchh
Confidence 34444455554433 2434566788999988889999999998888876 211 10000 000 00000122
Q ss_pred CccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEe
Q 016318 128 HICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTD 194 (391)
Q Consensus 128 ~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td 194 (391)
...+.|.-+.++| +|..+....+..|..+..++|+...-.....+ .-...|..+++|...+|-
T Consensus 329 aag~~p~RL~lsP-~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~---~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 329 AAGSEPVRLELSP-SGDSLAVSFGSDLKVFASEDGKDYPELEDIHS---TTISSISYSSDGKYIATC 391 (420)
T ss_pred hcCCCceEEEeCC-CCcEEEeecCCceEEEEcccCccchhHHHhhc---CceeeEEecCCCcEEeee
Confidence 2357788899999 78877777777788888877754322111111 245678889999866654
No 317
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.03 E-value=76 Score=29.51 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=32.6
Q ss_pred cCccceEEEecCCCcEEEEECC----CCeEEEeCCCCeeEEceec
Q 016318 130 CGRPLGLRFDKKTGDLYIADAY----FGLMKVGPEGGLATSLATE 170 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~----~gl~~~d~~~g~~~~~~~~ 170 (391)
+|....|.+|+-+++|+++-.. .||+++|.++|+.+.+...
T Consensus 105 aGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 105 AGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred ccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCC
Confidence 4666778889878899998553 3799999999999988643
No 318
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.92 E-value=1e+02 Score=31.01 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
-+.+|-+++...+..+++..+.+....... -..+..+++.+||.+..+.+ +.|-.||
T Consensus 114 ~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~~~sl~is~D~~~l~~as-------------------~~ik~~~ 170 (541)
T KOG4547|consen 114 LGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPLVSSLCISPDGKILLTAS-------------------RQIKVLD 170 (541)
T ss_pred cCceEecCCceeEEEEecccceeeeeeccC----CCccceEEEcCCCCEEEecc-------------------ceEEEEE
Confidence 345666655556888888877655544321 12567889999998877764 4788999
Q ss_pred CCCCeEEEeccCCCC-cceEEEccC
Q 016318 222 PTTKQTTVLLRNLQF-PNGLSLSKD 245 (391)
Q Consensus 222 ~~~~~~~~~~~~~~~-~ngia~~~d 245 (391)
.+++++-....+... .+.+++..+
T Consensus 171 ~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 171 IETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ccCceEEEEecCCCcceEEEEEEEe
Confidence 999887666655543 345555444
No 319
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=73.42 E-value=88 Score=29.96 Aligned_cols=108 Identities=10% Similarity=0.056 Sum_probs=61.1
Q ss_pred eccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecC
Q 016318 63 KFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKK 141 (391)
Q Consensus 63 ~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~ 141 (391)
..+|--.--+++.+.+.+ .+|.+++|+.|.+||-........ ..++.+ +.+.+.+
T Consensus 255 tl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~WDletg~~~~~----------------------~~~~ksl~~i~~~~- 310 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKVWDLETGGLKST----------------------LTTNKSLNCISYSP- 310 (423)
T ss_pred EecccccceeeEEEcCCC-ceEeecccceEEEEEeecccceee----------------------eecCcceeEeeccc-
Confidence 445555566778887644 599999999999998751111100 012333 3566666
Q ss_pred CCcEEEEEC-CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeC
Q 016318 142 TGDLYIADA-YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDS 195 (391)
Q Consensus 142 ~g~L~V~d~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~ 195 (391)
..+|+++.. ...|...||.++.-+......-|- -++...+.-.|.. .++++.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEe
Confidence 456666544 466888999876433222222222 1355666666644 4555443
No 320
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=73.01 E-value=1.5e+02 Score=32.37 Aligned_cols=143 Identities=19% Similarity=0.305 Sum_probs=85.3
Q ss_pred cceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecc
Q 016318 133 PLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
+..+.++..++.+|-+|.. ..+.+....+.....+. +...-.+.++++|. .+++|++|..
T Consensus 439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~lavD~~~~~~y~tDe~-------------- 500 (877)
T KOG1215|consen 439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC----GDGLCIPEGLAVDWIGDNIYWTDEG-------------- 500 (877)
T ss_pred ceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe----ccCccccCcEEEEeccCCceecccC--------------
Confidence 4445555445677777766 34666666544333311 11235788999998 5699999965
Q ss_pred cCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCC-CCeEEEEEeccccCccceeecccCCCCCceEeC
Q 016318 211 AEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGS-VGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTN 288 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~-~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d 288 (391)
...+.+-+.......++. ..+..|..++++|-..++++++.. ..+|.|-.++|.... ..+...-..|++++.|
T Consensus 501 ---~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~--~l~~~~~~~p~glt~d 575 (877)
T KOG1215|consen 501 ---NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERA--VLVTNGILWPNGLTID 575 (877)
T ss_pred ---CceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCce--EEEeCCccCCCcceEE
Confidence 223333333222223333 444788999999999999999876 346777777764221 1111112578999988
Q ss_pred CCCC-EEEEEc
Q 016318 289 EKGE-FWVAIH 298 (391)
Q Consensus 289 ~~G~-lwva~~ 298 (391)
-... +|-+..
T Consensus 576 ~~~~~~yw~d~ 586 (877)
T KOG1215|consen 576 YETDRLYWADA 586 (877)
T ss_pred eecceeEEEcc
Confidence 6444 444443
No 321
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=72.74 E-value=45 Score=34.68 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=66.8
Q ss_pred ceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC
Q 016318 134 LGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 134 ~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
..|++|+..+.+.++...+.|-.||.+.|+.........+. -..+-.+..||.|....+..+
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDPSgiY~atScs----------------- 661 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDPSGIYLATSCS----------------- 661 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECCCccEEEEeec-----------------
Confidence 45666663333344444566888888877655432211110 123456778888765555443
Q ss_pred CceEEEEeCCCCeEEEeccCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 214 TGRVLKYDPTTKQTTVLLRNL-QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~-~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+..|..||-.+|+...-+.+- ....|+-|.+|=+.| ++-++.++|..+.+.
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence 356778888777764433332 345788899998754 455677787776553
No 322
>smart00284 OLF Olfactomedin-like domains.
Probab=72.31 E-value=77 Score=28.83 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=30.2
Q ss_pred EEecCCCcEEEEECC---CC--eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEe
Q 016318 137 RFDKKTGDLYIADAY---FG--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTD 194 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~---~g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td 194 (391)
+|.- -|.||+.++. .. -+.+|..+++-+.+.-.+. .+......|.-.| |..||+=|
T Consensus 181 aFmv-CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~-n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 181 AFMI-CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFE-NMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred cEEE-eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeec-cccccceeceeCCCCCeEEEEe
Confidence 4444 5789998752 12 5777887765443322221 1123334455565 45677776
No 323
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=71.97 E-value=96 Score=29.78 Aligned_cols=152 Identities=13% Similarity=0.157 Sum_probs=85.1
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEE--eCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFW--DGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
.+..+...+.|+++++++...+...+ ... . ++... .-...-+|..+.+..++-..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------------~~~v~~~~~ai~~~~~~~sv 122 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------------VSCVPKRPTAISFIREDTSV 122 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------------EeecccCcceeeeeeccceE
Confidence 56666777788877877776664333 222 1 11111 00113567788887756678
Q ss_pred EEEECCCCeEEEeCCC---CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeC
Q 016318 146 YIADAYFGLMKVGPEG---GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDP 222 (391)
Q Consensus 146 ~V~d~~~gl~~~d~~~---g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 222 (391)
.|+|.....+.+|.-. +..+.+.. ...-..++++.+|+...++... ...=|+.+|..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~~~lG-----hvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa 182 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCEPILG-----HVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPA 182 (390)
T ss_pred EEEeecCCceeeeeecccccCcchhhh-----hhhhhheeeecCCCCEEEEecC---------------CceEEEEecCc
Confidence 8888766677766432 22222211 2345678999998877666522 01124555542
Q ss_pred CCCeEEEecc-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 223 TTKQTTVLLR-NLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 223 ~~~~~~~~~~-~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+-.++.+.- .-.|...+++.++. ++++..+.+.|+.+++.
T Consensus 183 -~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 183 -TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred -ccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecc
Confidence 223333321 22467788887554 45666777777777765
No 324
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=71.94 E-value=88 Score=29.30 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCcEEEEECC------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318 142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 142 ~g~L~V~d~~------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
++.|||.-.. +.++++|+.+.+.+.+... ...+ .....++.-+++||+...... ....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~--r~~~~~~~~~~~iYv~GG~~~-------------~~~~ 186 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF-PGEP--RVQPVCVKLQNELYVFGGGSN-------------IAYT 186 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC-CCCC--CCcceEEEECCEEEEEcCCCC-------------cccc
Confidence 5789886432 2489999998887766421 1111 122233344678999863210 0012
Q ss_pred eEEEEeCCCCeEEEec
Q 016318 216 RVLKYDPTTKQTTVLL 231 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~ 231 (391)
.+++||+++.+.+.+.
T Consensus 187 ~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 187 DGYKYSPKKNQWQKVA 202 (323)
T ss_pred ceEEEecCCCeeEECC
Confidence 4689999998887764
No 325
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=71.69 E-value=1.2e+02 Score=31.06 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCCeEEEe
Q 016318 79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVG 158 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d 158 (391)
+++.+++++.++.|..|+....+-+... ....++..++.++. ...++=+.....|...|
T Consensus 340 ~~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~~V~sl~~~~-~~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 340 DEPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTGRVYSLIVDS-ENRLLSGSLDTTIKVWD 398 (537)
T ss_pred cCCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcceEEEEEecC-cceEEeeeeccceEeec
Confidence 4677999999998888877632222221 11246777888875 35566665555688888
Q ss_pred CCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc
Q 016318 159 PEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP 237 (391)
Q Consensus 159 ~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~ 237 (391)
..+.. ........ ....+++. -.++++++.+. ++.|-.||.++++......... -
T Consensus 399 l~~~~~c~~tl~~h----~~~v~~l~--~~~~~Lvs~~a-----------------D~~Ik~WD~~~~~~~~~~~~~~-~ 454 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGH----TSLVSSLL--LRDNFLVSSSA-----------------DGTIKLWDAEEGECLRTLEGRH-V 454 (537)
T ss_pred CCchhhhhhhhcCC----cccccccc--cccceeEeccc-----------------cccEEEeecccCceeeeeccCC-c
Confidence 88762 21111111 11122222 24566676643 5678888888877665554421 1
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 238 NGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 238 ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.++..-..++...++....+.+..+++.
T Consensus 455 ~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 455 GGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccEEEeecCcceEEEEecCCeeEEEecc
Confidence 1222111221234444556667666654
No 326
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.44 E-value=88 Score=29.12 Aligned_cols=142 Identities=14% Similarity=0.116 Sum_probs=70.2
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecc
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
+.-+.++++ ++.-||++...||..+|.....-..+....+-.+ ....+.+. +.+.|+++-.
T Consensus 172 ~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~sv~vs-dnr~y~vvy~-------------- 232 (370)
T COG5276 172 GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYSVSVS-DNRAYLVVYD-------------- 232 (370)
T ss_pred CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--ceEEEEec-CCeeEEEEcc--------------
Confidence 334566775 5789999999999999876543223322211110 23333333 4477777732
Q ss_pred cCCCceEEEEeCCCCeEEEec--cCCCCcce---EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC-CCCc
Q 016318 211 AEDTGRVLKYDPTTKQTTVLL--RNLQFPNG---LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG-YPDN 284 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~~~~--~~~~~~ng---ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g-~p~~ 284 (391)
.+++..|.++-+...+. ..-+.|-+ +.+ -+++.|+++-. ..+-..++..+.......-...+| ...+
T Consensus 233 ----egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga-~gl~~idisnp~spfl~ss~~t~g~~a~g 305 (370)
T COG5276 233 ----EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGA-KGLPIIDISNPPSPFLSSSLDTAGYQAAG 305 (370)
T ss_pred ----cceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccc-cCceeEeccCCCCCchhccccCCCccccc
Confidence 35666665544322221 11223333 344 35668988653 455555555432111111112233 4455
Q ss_pred eEeCCCCCEEEEEcC
Q 016318 285 VRTNEKGEFWVAIHC 299 (391)
Q Consensus 285 i~~d~~G~lwva~~~ 299 (391)
|+.. ++.++++...
T Consensus 306 i~ay-~~y~yiadkn 319 (370)
T COG5276 306 IRAY-GNYNYIADKN 319 (370)
T ss_pred eEEe-cCeeEeccCC
Confidence 6653 3345555443
No 327
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.05 E-value=48 Score=33.26 Aligned_cols=147 Identities=19% Similarity=0.241 Sum_probs=74.0
Q ss_pred CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCE-EEEeCCCcccchhheee
Q 016318 131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQL 207 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~l-y~td~~~~~~~~~~~~~ 207 (391)
.+|+-+-.+..+.+|+..+.. .+|+++|.+.|++-.-...... .+=+.+.+++.. =.++.++
T Consensus 333 ~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-----i~mv~~t~d~K~~Ql~~e~T---------- 397 (644)
T KOG2395|consen 333 IDPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-----INMVDITPDFKFAQLTSEQT---------- 397 (644)
T ss_pred cCcchhhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCC-----cceeeccCCcchhccccccc----------
Confidence 456654444335677776654 5799999999876543322111 111222222110 0001111
Q ss_pred ecccCCCceEEEEeCCCCeE--EEeccCCCC-----cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCC
Q 016318 208 VFSAEDTGRVLKYDPTTKQT--TVLLRNLQF-----PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPG 280 (391)
Q Consensus 208 ~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~-----~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g 280 (391)
+-+-.+.+|+++||.-... ..+.+.-++ -+.++-..+|. |.|+ +..+.|..|+..|..+.+ -+||
T Consensus 398 -lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~-Ivvg-S~~GdIRLYdri~~~AKT-----AlPg 469 (644)
T KOG2395|consen 398 -LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGY-IVVG-SLKGDIRLYDRIGRRAKT-----ALPG 469 (644)
T ss_pred -EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCce-EEEe-ecCCcEEeehhhhhhhhh-----cccc
Confidence 1223357899999863222 111111111 22445555665 5555 556677777644322111 2566
Q ss_pred CC---CceEeCCCCCEEEEEcCC
Q 016318 281 YP---DNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 281 ~p---~~i~~d~~G~lwva~~~~ 300 (391)
+- ..|.+..+|...+|+...
T Consensus 470 LG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 470 LGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred cCCceeeEEeeccCcEEEEeccc
Confidence 43 456778899877777654
No 328
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=70.03 E-value=42 Score=32.41 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=21.7
Q ss_pred cceEEEecCCCcEEEEECCCC-eEEEeCCCC
Q 016318 133 PLGLRFDKKTGDLYIADAYFG-LMKVGPEGG 162 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g 162 (391)
...|-++-++.-|||+.+-.| |.++|.+.-
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 346666664566999998877 778987654
No 329
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=69.73 E-value=1.1e+02 Score=29.49 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=29.9
Q ss_pred CCcEEEEECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceeec-CCCCEEEEeC
Q 016318 142 TGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDS 195 (391)
Q Consensus 142 ~g~L~V~d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d-~~G~ly~td~ 195 (391)
++.|||.-.. ..++++|+.+++.+.+.... +.......++. -+++||+...
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~---p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS---PVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC---CCcccceEEEEeeCCEEEEECC
Confidence 5788886432 23889999988877764211 11111122222 4789999864
No 330
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=67.97 E-value=1.2e+02 Score=29.31 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=36.4
Q ss_pred CCceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 213 DTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
.+..+..||-.||+...-.+.......+.++.||. ++++.....+|..++.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDP 202 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcC
Confidence 35688899999888655544334456788999999 6666566667777763
No 331
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.58 E-value=85 Score=33.57 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=18.5
Q ss_pred CCcEEEEECCCCeEEEeCCCCeeE
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLAT 165 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~~ 165 (391)
++++|+++....|+.+|.+||+..
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEE
Confidence 467888877666999999888644
No 332
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=66.44 E-value=43 Score=31.65 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=90.5
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
|--++-.| |+. +..|..|..|-.||.+... |. + ......|..+++.++ .+++|..
T Consensus 199 gVYClQYD-D~k-iVSGlrDnTikiWD~n~~~------------c~-------~-~L~GHtGSVLCLqyd---~rviisG 253 (499)
T KOG0281|consen 199 GVYCLQYD-DEK-IVSGLRDNTIKIWDKNSLE------------CL-------K-ILTGHTGSVLCLQYD---ERVIVSG 253 (499)
T ss_pred ceEEEEec-chh-hhcccccCceEEeccccHH------------HH-------H-hhhcCCCcEEeeecc---ceEEEec
Confidence 44455554 444 7888888888888765211 10 0 011124667788886 3577765
Q ss_pred CC-CCeEEEeCCCCeeE-EceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 150 AY-FGLMKVGPEGGLAT-SLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 150 ~~-~gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
+. .-+...|.++|+.- ++....+. .-++.+. + ++.++.+. +..+-.+|...-.-
T Consensus 254 SSDsTvrvWDv~tge~l~tlihHcea-----VLhlrf~-n-g~mvtcSk-----------------DrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTGEPLNTLIHHCEA-----VLHLRFS-N-GYMVTCSK-----------------DRSIAVWDMASPTD 309 (499)
T ss_pred CCCceEEEEeccCCchhhHHhhhcce-----eEEEEEe-C-CEEEEecC-----------------CceeEEEeccCchH
Confidence 44 44888888887522 22111111 1112221 2 23344432 22334444332221
Q ss_pred ----EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCC-CCCEEEEEcCCCc
Q 016318 228 ----TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNE-KGEFWVAIHCRRS 302 (391)
Q Consensus 228 ----~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~ 302 (391)
+++.......|.|.+ |.+ ..|+.++...|..++.. +.+....+.|.-.||++-. .|++.|+..+..+
T Consensus 310 it~rrVLvGHrAaVNvVdf--d~k-yIVsASgDRTikvW~~s-----t~efvRtl~gHkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWSTS-----TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred HHHHHHHhhhhhheeeecc--ccc-eEEEecCCceEEEEecc-----ceeeehhhhcccccceehhccCeEEEecCCCce
Confidence 122333455677776 455 55665655555555432 2344455677788888754 5667776555544
Q ss_pred h
Q 016318 303 L 303 (391)
Q Consensus 303 ~ 303 (391)
.
T Consensus 382 I 382 (499)
T KOG0281|consen 382 I 382 (499)
T ss_pred E
Confidence 3
No 333
>smart00284 OLF Olfactomedin-like domains.
Probab=65.55 E-value=1.1e+02 Score=27.90 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=85.3
Q ss_pred cccCcceEEEccCCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCc
Q 016318 67 QIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGD 144 (391)
Q Consensus 67 ~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~ 144 (391)
...|.-.++. +|.++|--.....|+|++-. + ...-...... .. .. .. .. ..+-...|.+..|++-
T Consensus 73 ~~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a-~y--~~---~~---~Y--~~~~~sdiDlAvDE~G 139 (255)
T smart00284 73 AGQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGA-GY--NN---RF---PY--AWGGFSDIDLAVDENG 139 (255)
T ss_pred ccccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCcc-cc--cc---cc---cc--ccCCCccEEEEEcCCc
Confidence 4567777776 47755655455789999877 2 2111111110 00 00 00 00 0111223444444677
Q ss_pred EEEEEC---CCC---eEEEeCCCCeeEEceec-cCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce-
Q 016318 145 LYIADA---YFG---LMKVGPEGGLATSLATE-AEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR- 216 (391)
Q Consensus 145 L~V~d~---~~g---l~~~d~~~g~~~~~~~~-~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~- 216 (391)
|||-=+ ..| |-++|+++=.++..... ... -..-+. +---|.||++++.. ....+
T Consensus 140 LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k--~sa~na--FmvCGvLY~~~s~~--------------~~~~~I 201 (255)
T smart00284 140 LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNK--RSASNA--FMICGILYVTRSLG--------------SKGEKV 201 (255)
T ss_pred eEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCc--cccccc--EEEeeEEEEEccCC--------------CCCcEE
Confidence 988622 234 55889887665544322 111 112233 33368999998531 11234
Q ss_pred EEEEeCCCCeEEEeccC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 217 VLKYDPTTKQTTVLLRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 217 l~~~d~~~~~~~~~~~~----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
.+.||..+++...+.-. ......|...|..+.||+=+ ++.+..|++
T Consensus 202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred EEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 46799887764433211 12334577888888788865 566777764
No 334
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=65.30 E-value=19 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.3
Q ss_pred cceEEEecCCCcEEEEECCCCeEEEeCCC
Q 016318 133 PLGLRFDKKTGDLYIADAYFGLMKVGPEG 161 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl~~~d~~~ 161 (391)
..++.+. ++.+||++...||..+|...
T Consensus 4 a~~v~v~--g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 4 ARDVAVS--GNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEEE--CCEEEEEeCCCCEEEEECCC
Confidence 3456665 67899999989999999764
No 335
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.61 E-value=1.3e+02 Score=28.64 Aligned_cols=162 Identities=18% Similarity=0.247 Sum_probs=81.0
Q ss_pred CCeeEEEec--CCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC---
Q 016318 80 GRGPYTGVA--DGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA--- 150 (391)
Q Consensus 80 G~~ly~~~~--~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~--- 150 (391)
|+.+|++.. ...-+++|.+ +|+.++.+.... -..+....+ ++.|||=..
T Consensus 46 g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~-------------------rnqa~~a~~---~~kLyvFgG~Gk 103 (381)
T COG3055 46 GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGA-------------------RNQAVAAVI---GGKLYVFGGYGK 103 (381)
T ss_pred cceEEEEeccCCccceehhhhcCCCCceEcccCCCcc-------------------cccchheee---CCeEEEeecccc
Confidence 335788765 5556666544 677776553210 011222222 567777322
Q ss_pred --------CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecc-----------
Q 016318 151 --------YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFS----------- 210 (391)
Q Consensus 151 --------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~----------- 210 (391)
.+.++++|+.+.+.+.+.+..+- ...-..++..++ .+||..-..+.....++.++-+
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~---gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i 180 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPT---GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI 180 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheecccccc---ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHH
Confidence 12488999988877766543211 112222333344 7888764444333333322211
Q ss_pred ------cC-----CCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeC------CCCeEEEEEecc
Q 016318 211 ------AE-----DTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEG------SVGRLHKYWLIG 266 (391)
Q Consensus 211 ------~~-----~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et------~~~~I~~~~~~g 266 (391)
.. -+.-++.|+|.+.+.+.+-.....+ .|.++...++.+++.+- ++..++++.+.+
T Consensus 181 ~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~ 254 (381)
T COG3055 181 IAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG 254 (381)
T ss_pred HHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc
Confidence 11 1345888999887777665333333 35555545553444432 123455555543
No 336
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=64.56 E-value=48 Score=33.13 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=34.5
Q ss_pred ceEEEEeCCCCeEEEeccCCC-CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
|-+-.||.-+...++...++. ..-+|.++.+|++++. |...-|...++.
T Consensus 583 GDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila--TCk~yllL~d~~ 632 (776)
T COG5167 583 GDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA--TCKNYLLLTDVP 632 (776)
T ss_pred CceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE--eecceEEEEecc
Confidence 567778877666667666664 4458999999996653 556677777765
No 337
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=64.11 E-value=11 Score=23.01 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=16.8
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~ 98 (391)
+++++ +| .+|+++.+|+++.++.+
T Consensus 16 ~~~v~-~g-~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GG-RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EEC-TS-EEEEE-TTSEEEEEETT
T ss_pred CCEEE-CC-EEEEEcCCCEEEEEeCC
Confidence 45665 45 49999999999999864
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.09 E-value=47 Score=33.50 Aligned_cols=72 Identities=17% Similarity=0.066 Sum_probs=51.8
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE-E
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL-Y 146 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L-~ 146 (391)
..+.+.+.+++...+..|..||.|.-+|.. +.+..+.. .-.|.-+++++ +|.+ .
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-----------------------~~~P~~iaWHp-~gai~~ 315 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-----------------------EFIPTLIAWHP-DGAIFV 315 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-----------------------cccceEEEEcC-CCcEEE
Confidence 367788899998889999999999999987 54444321 23488899999 5665 4
Q ss_pred EEECCCCeEEEeCCCCee
Q 016318 147 IADAYFGLMKVGPEGGLA 164 (391)
Q Consensus 147 V~d~~~gl~~~d~~~g~~ 164 (391)
|++..+.|..+|..-+-+
T Consensus 316 V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCCceEEEEEeecCcc
Confidence 554434488888765433
No 339
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=62.89 E-value=1.5e+02 Score=28.60 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=61.7
Q ss_pred cCccceEEEecCCCcEEEEECC-CCeEEEeCCCCeeEEceecc--CCCcc-cCCcceeecCCCCEEEEeCCCcccchhhe
Q 016318 130 CGRPLGLRFDKKTGDLYIADAY-FGLMKVGPEGGLATSLATEA--EGVPL-RFTNDLDIDDEGNVYFTDSSTNYQRRNFM 205 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~-~gl~~~d~~~g~~~~~~~~~--~~~~~-~~~~~l~~d~~G~ly~td~~~~~~~~~~~ 205 (391)
.|-...|.|+. +++.++.... ..+..++.+.-..+....++ .+.+. .....++++..++..++.
T Consensus 56 ~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG----------- 123 (609)
T KOG4227|consen 56 TGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG----------- 123 (609)
T ss_pred ccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC-----------
Confidence 34456788886 5554443222 22333333211111111111 11122 345567777665554443
Q ss_pred eeecccCCCceEEEEeCCCCeEEEeccCC---CCcceEEEccCCCEEEEEeCCCCeEEEEEecc
Q 016318 206 QLVFSAEDTGRVLKYDPTTKQTTVLLRNL---QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIG 266 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g 266 (391)
...+.|+..|.++++..-+...- ....++..+|-.+.+ +..+...++..++...
T Consensus 124 ------~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~-~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 124 ------ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTL-IVVTRAKLVSFIDNRD 180 (609)
T ss_pred ------CCcceeEeeecccceeeeeecccCcccceeecccCCCCceE-EEEecCceEEEEeccC
Confidence 23578999999888765543221 245577788876634 4446667777776543
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.83 E-value=1.5e+02 Score=28.70 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEEEeCC----------CCeEEEEEeccccCccceeecccC-CC
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGS----------VGRLHKYWLIGEKAGNLEAFAILP-GY 281 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v~et~----------~~~I~~~~~~g~~~g~~~~~~~~~-g~ 281 (391)
-.+..+|.++|+... +.+. ...++++.+|++.+|.+... ..+|+++.+..+......+|.... .+
T Consensus 150 ~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 150 YTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 468889999886533 2222 22249999998877776533 334788776543222233444321 12
Q ss_pred -CCceEeCCCCCEEE
Q 016318 282 -PDNVRTNEKGEFWV 295 (391)
Q Consensus 282 -p~~i~~d~~G~lwv 295 (391)
--++..+++|++.+
T Consensus 228 ~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLF 242 (414)
T ss_dssp SEEEEEE-TTSSEEE
T ss_pred EEEEEEecCcccEEE
Confidence 23577788888443
No 341
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=61.91 E-value=2e+02 Score=29.86 Aligned_cols=88 Identities=9% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCcccCCcceeecCCCCEEE--EeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC-CcceEEEccCCCEE
Q 016318 173 GVPLRFTNDLDIDDEGNVYF--TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSKDKSFF 249 (391)
Q Consensus 173 ~~~~~~~~~l~~d~~G~ly~--td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~ngia~~~d~~~l 249 (391)
+..+...-++++++|+++.+ .|.. +...=.+...|.++|+.- .+.+. ..-++++.+|++.+
T Consensus 125 g~~f~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~~--~d~i~~~~~~~~Wa~d~~~l 188 (682)
T COG1770 125 GHDFFSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEEL--PDEITNTSGSFAWAADGKTL 188 (682)
T ss_pred cccceeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEeccccccc--chhhcccccceEEecCCCeE
Confidence 33445556677788876433 2321 111124556676666532 22222 24478889999988
Q ss_pred EEEeCCC----CeEEEEEeccccCccceeec
Q 016318 250 VFCEGSV----GRLHKYWLIGEKAGNLEAFA 276 (391)
Q Consensus 250 ~v~et~~----~~I~~~~~~g~~~g~~~~~~ 276 (391)
|.+.... .++++..+.++......+|.
T Consensus 189 fYt~~d~~~rp~kv~~h~~gt~~~~d~lvye 219 (682)
T COG1770 189 FYTRLDENHRPDKVWRHRLGTPGSSDELVYE 219 (682)
T ss_pred EEEEEcCCCCcceEEEEecCCCCCcceEEEE
Confidence 8775433 46888877664333333443
No 342
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=61.49 E-value=61 Score=33.21 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=60.3
Q ss_pred cCccceEEEecCCCcEEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
.+..+++++++ +|++...-...| |.+++|..+.....- ..|.....---|...=||++.+...-
T Consensus 720 tdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~E--g~gpvgtRgARi~wacdgr~viv~Gf------------ 784 (1012)
T KOG1445|consen 720 TDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYE--GKGPVGTRGARILWACDGRIVIVVGF------------ 784 (1012)
T ss_pred cCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCcccc--CCCCccCcceeEEEEecCcEEEEecc------------
Confidence 46688999999 777766544555 888888765422221 11111111112333345655444311
Q ss_pred cccCCCceEEEEeCCCCeEEEec----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVLL----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.......|..||..+-....+. +....+---..++|.+.++++.-+..+|+.|.+.
T Consensus 785 -dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 785 -DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred -cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 1111234555665433221111 1111111112567888788887777788888754
No 343
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.39 E-value=1e+02 Score=32.42 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=76.1
Q ss_pred CeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEEeC
Q 016318 81 RGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKVGP 159 (391)
Q Consensus 81 ~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~d~ 159 (391)
++|.|+..+|.|..||-.+.. .+ ..- +..-|+ --..+.+.|++-.-++.|.....| +-.+|.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~------rn--k~l--------~~f~EH-~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSI------RN--KLL--------TVFNEH-ERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhheeecCCCcEEEEecCccc------cc--hhh--------hHhhhh-ccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 456677778888888765210 00 000 000111 122456777765567777766666 555676
Q ss_pred CCCeeEEceeccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC---
Q 016318 160 EGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--- 235 (391)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--- 235 (391)
...+-+..... .--...++.+.+ .++.+++.. .+|.|..||.. +.......+.
T Consensus 164 R~~~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~-----------------dsG~lqlWDlR--qp~r~~~k~~AH~ 220 (839)
T KOG0269|consen 164 RSKKSKSTFRS----NSESIRDVKFSPGYGNKFASIH-----------------DSGYLQLWDLR--QPDRCEKKLTAHN 220 (839)
T ss_pred ecccccccccc----cchhhhceeeccCCCceEEEec-----------------CCceEEEeecc--CchhHHHHhhccc
Confidence 54322211111 123578888887 466666653 25788889864 3222222222
Q ss_pred -CcceEEEccCCCEEEEEeCCCCeEEEEE-eccccC
Q 016318 236 -FPNGLSLSKDKSFFVFCEGSVGRLHKYW-LIGEKA 269 (391)
Q Consensus 236 -~~ngia~~~d~~~l~v~et~~~~I~~~~-~~g~~~ 269 (391)
....+-++|++. |+|..++....++| ..+.++
T Consensus 221 GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 221 GPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred CceEEEeecCCCc--eeeecCCCccEEEEeccCCCc
Confidence 223455789665 55544444444444 444433
No 344
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=59.19 E-value=1.4e+02 Score=26.90 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=49.6
Q ss_pred eEEEcc-CCCeeEEEecCCEEEEEeCC-c-eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 73 SMAFDP-LGRGPYTGVADGRILFWDGL-K-WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 73 ~i~~d~-~G~~ly~~~~~g~I~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
+|.+.| +|. +|.-...++|+.+++. . .+.+... . . .. ...+.+.|+.|.|--++|.|..
T Consensus 31 GID~Rpa~G~-LYgl~~~g~lYtIn~~tG~aT~vg~s-~-----~----------~~-al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 31 GIDFRPANGQ-LYGLGSTGRLYTINPATGAATPVGAS-P-----L----------TV-ALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred EEEeecCCCC-EEEEeCCCcEEEEECCCCeEEEeecc-c-----c----------cc-cccCceEEEecCcccCcEEEEc
Confidence 455555 455 8888888999999988 2 2333100 0 0 01 1124478899988778998876
Q ss_pred CCCCeEEEeCCCCeeE
Q 016318 150 AYFGLMKVGPEGGLAT 165 (391)
Q Consensus 150 ~~~gl~~~d~~~g~~~ 165 (391)
....-+|+++++|.+.
T Consensus 93 ~~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 93 NTGQNLRLNPDTGAVT 108 (236)
T ss_pred cCCcEEEECCCCCCce
Confidence 6556899999998743
No 345
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=59.03 E-value=2e+02 Score=28.83 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCcEEEEEC-----CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCce
Q 016318 142 TGDLYIADA-----YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGR 216 (391)
Q Consensus 142 ~g~L~V~d~-----~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~ 216 (391)
.+.||+... ....+.+|.++. ++-....... ....+...++|++++... .+
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~-Vrw~~~~~~~----~~~~~~~l~nG~ll~~~~-------------------~~ 168 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGD-VRWYLPLDSG----SDNSFKQLPNGNLLIGSG-------------------NR 168 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS--EEEEE-GGGT------SSEEE-TTS-EEEEEB-------------------TE
T ss_pred CCcEEEEeCCCCCCCceEEEECCCcc-EEEEEccCcc----ccceeeEcCCCCEEEecC-------------------Cc
Confidence 345666554 234788887754 4332221111 111166778999998873 36
Q ss_pred EEEEeCCCCeEEEec-cC--CCCcceEEEccCCCEEEEEe
Q 016318 217 VLKYDPTTKQTTVLL-RN--LQFPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 217 l~~~d~~~~~~~~~~-~~--~~~~ngia~~~d~~~l~v~e 253 (391)
+..+|..++...... .. ..+-..+...|+|++|+.+.
T Consensus 169 ~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 169 LYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 677776654333322 11 12345677777888766654
No 346
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=58.49 E-value=1.7e+02 Score=28.38 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=61.0
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC--------C-----CeE----EEeccCCCCcce
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT--------T-----KQT----TVLLRNLQFPNG 239 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--------~-----~~~----~~~~~~~~~~ng 239 (391)
...|.+-++++|++..+..- .|.++.+-.. + ++. +++......+..
T Consensus 66 ~aVN~vRf~p~gelLASg~D-----------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd 128 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGD-----------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD 128 (434)
T ss_pred ceeEEEEEcCCcCeeeecCC-----------------CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh
Confidence 35788888889888776421 3445544433 2 111 111222345778
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEEEEEcCCC
Q 016318 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRR 301 (391)
Q Consensus 240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~ 301 (391)
+++++|++++..+ +..+.++.+++. +|+..... +...++.+++.|+-+.+.......+
T Consensus 129 L~Ws~d~~~l~s~-s~dns~~l~Dv~---~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 129 LAWSPDSNFLVSG-SVDNSVRLWDVH---AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hhccCCCceeeee-eccceEEEEEec---cceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 8999999966554 556677777653 34433322 3446788888888876555554443
No 347
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.64 E-value=13 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=14.3
Q ss_pred CcEEEEECCCCeEEEeCCCCee
Q 016318 143 GDLYIADAYFGLMKVGPEGGLA 164 (391)
Q Consensus 143 g~L~V~d~~~gl~~~d~~~g~~ 164 (391)
|.+|+++....|+.+|.+||++
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSE
T ss_pred CEEEEeCCCCEEEEEECCCCCE
Confidence 3567773334488888888754
No 348
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=56.43 E-value=1.6e+02 Score=27.90 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=34.5
Q ss_pred cCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCC-----CCCceEeCCCCCEEEEEcCC
Q 016318 244 KDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPG-----YPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 244 ~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g-----~p~~i~~d~~G~lwva~~~~ 300 (391)
-||+.++|........+.+.++.-+.|....+. ++.| ++.||.--.+|++|++.-++
T Consensus 141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG 203 (442)
T PF15416_consen 141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSG 203 (442)
T ss_pred CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccC
Confidence 378877777553434444444433445444332 3322 67888888899999997654
No 349
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.04 E-value=2.3e+02 Score=28.63 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=62.5
Q ss_pred EEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCC
Q 016318 146 YIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 146 ~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 223 (391)
.|-..+.| ++.++..+|+++..... +......+.+.- +.-|.||-.+ .+.++..++..
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st--~~h~~~v~~~~~~~~~~ciyS~~------------------ad~~v~~~~~~ 132 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLST--DKHYGNVNEILDAQRLGCIYSVG------------------ADLKVVYILEK 132 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEec--CCCCCcceeeecccccCceEecC------------------CceeEEEEecc
Confidence 33333444 88888888877754321 111111222221 1224444443 35788888888
Q ss_pred CCeEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCC
Q 016318 224 TKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYP 282 (391)
Q Consensus 224 ~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p 282 (391)
.++..... ..-..+..++++||+..+.++ .+.|..++++. .+++..++|.+
T Consensus 133 ~~~~~~~~~~~~~~~~sl~is~D~~~l~~a---s~~ik~~~~~~-----kevv~~ftgh~ 184 (541)
T KOG4547|consen 133 EKVIIRIWKEQKPLVSSLCISPDGKILLTA---SRQIKVLDIET-----KEVVITFTGHG 184 (541)
T ss_pred cceeeeeeccCCCccceEEEcCCCCEEEec---cceEEEEEccC-----ceEEEEecCCC
Confidence 77665443 344567789999999966554 46899998654 34554445543
No 350
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=55.99 E-value=2.3e+02 Score=28.61 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=41.1
Q ss_pred cceeecCCCCEEE-EeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCC--CcceEEEccCCCEEEEEeCC-
Q 016318 180 NDLDIDDEGNVYF-TDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQ--FPNGLSLSKDKSFFVFCEGS- 255 (391)
Q Consensus 180 ~~l~~d~~G~ly~-td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~ngia~~~d~~~l~v~et~- 255 (391)
|.+.+.+.|+|.+ +..+ +-.|.+-.||..+.+. +..+. ...-..++|||++++.+.|.
T Consensus 315 N~~~fnp~g~ii~lAGFG---------------NL~G~mEvwDv~n~K~---i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFG---------------NLPGDMEVWDVPNRKL---IAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred cceEECCCCCEEEEeecC---------------CCCCceEEEeccchhh---ccccccCCceEEEEcCCCcEEEEEeccc
Confidence 5566777776443 3332 2246777888765332 22222 33356799999999888665
Q ss_pred ----CCeEEEEEeccc
Q 016318 256 ----VGRLHKYWLIGE 267 (391)
Q Consensus 256 ----~~~I~~~~~~g~ 267 (391)
++.+..++..|.
T Consensus 377 RlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGS 392 (566)
T ss_pred cEEecCCeEEEEecCc
Confidence 244555555664
No 351
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.89 E-value=1.2e+02 Score=30.68 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=42.3
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC-CCcEEEEECC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK-TGDLYIADAY 151 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~-~g~L~V~d~~ 151 (391)
++....+|.++..|+.|-++..||+-..+.......+ + ......+.|-|. ++++.+..++
T Consensus 55 ~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg------------------H-taNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 55 CLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG------------------H-TANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred ceeecCCCCEEeecCCcceEEeecchhcceeeeeecc------------------c-ccceeEEeeeccCCCeEEEeccC
Confidence 4667889998899999999999988622222111100 1 233455566554 4556666555
Q ss_pred -CCeEEEeCC
Q 016318 152 -FGLMKVGPE 160 (391)
Q Consensus 152 -~gl~~~d~~ 160 (391)
.-|..+|.+
T Consensus 116 Dk~i~lfdl~ 125 (758)
T KOG1310|consen 116 DKLIKLFDLD 125 (758)
T ss_pred cceEEEEecc
Confidence 347777765
No 352
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=54.57 E-value=2.4e+02 Score=28.44 Aligned_cols=143 Identities=18% Similarity=0.253 Sum_probs=74.0
Q ss_pred CccceEEEecCCCcEEEEECC--CCeEEEeCCCCeeEEceeccCCC--cccCCcceee-cCCCCEEEEeCCCcccchhhe
Q 016318 131 GRPLGLRFDKKTGDLYIADAY--FGLMKVGPEGGLATSLATEAEGV--PLRFTNDLDI-DDEGNVYFTDSSTNYQRRNFM 205 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~--~gl~~~d~~~g~~~~~~~~~~~~--~~~~~~~l~~-d~~G~ly~td~~~~~~~~~~~ 205 (391)
-+|.-+..+..+..|+..|.. ..|+++|..-|++-.-....+.. ++..-+..+. .+.++| ++
T Consensus 467 idp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl-vG------------ 533 (776)
T COG5167 467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL-VG------------ 533 (776)
T ss_pred CChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE-Ee------------
Confidence 357666665445667777665 34999999877654322221111 0111111111 112222 22
Q ss_pred eeecccCCCceEEEEeCCCC--eEEEec-----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeeccc
Q 016318 206 QLVFSAEDTGRVLKYDPTTK--QTTVLL-----RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAIL 278 (391)
Q Consensus 206 ~~~~~~~~~g~l~~~d~~~~--~~~~~~-----~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~ 278 (391)
-.+..|+++||.-. ++.+.. ..-.|..+.+ ...| ++.++ +.++-|..|+.-|..+.+ -+
T Consensus 534 ------lS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~t-TesG-yIa~a-s~kGDirLyDRig~rAKt-----al 599 (776)
T COG5167 534 ------LSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMT-TESG-YIAAA-SRKGDIRLYDRIGKRAKT-----AL 599 (776)
T ss_pred ------ecccceEEecccccCCceeeeeehhcccccccccccc-ccCc-eEEEe-cCCCceeeehhhcchhhh-----cC
Confidence 12457999998543 232221 1223343333 3344 35555 567788888766543221 25
Q ss_pred CCCC---CceEeCCCCCEEEEEcCC
Q 016318 279 PGYP---DNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 279 ~g~p---~~i~~d~~G~lwva~~~~ 300 (391)
|++- -+|.+..+|...+|+...
T Consensus 600 P~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 600 PGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred cccccceeeeEeecCCcEEEEeecc
Confidence 5544 357788999988887653
No 353
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=54.54 E-value=32 Score=33.15 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.8
Q ss_pred ceEEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318 238 NGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK 268 (391)
Q Consensus 238 ngia~~~d~~~l~v~et~~~~I~~~~~~g~~ 268 (391)
..|-+|=|.+||||+....+-|++|++..+.
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 4577888999999999999999999998763
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.89 E-value=83 Score=31.82 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=38.5
Q ss_pred CceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 214 TGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+|.|..||...+.+... ...-.|+-++++|+|..+.|+ +.++.|..++.+
T Consensus 280 DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~-s~qGelQ~FD~A 329 (545)
T PF11768_consen 280 DGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVG-SEQGELQCFDMA 329 (545)
T ss_pred CCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEE-cCCceEEEEEee
Confidence 58899999876654433 334569999999999977666 667899999865
No 355
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=53.89 E-value=1.7e+02 Score=28.54 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=78.6
Q ss_pred eEEEecC-CCcEEEEECCCCeEEEeCCCCeeE--Ece--eccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeee
Q 016318 135 GLRFDKK-TGDLYIADAYFGLMKVGPEGGLAT--SLA--TEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 135 gi~~d~~-~g~L~V~d~~~gl~~~d~~~g~~~--~~~--~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~ 208 (391)
|+.+... .+.|.-+.....+..+|......+ .+. ..+.+ .-...++++..+. -.+|.+..
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~------------- 247 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVG------------- 247 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeec-------------
Confidence 4555431 345555544455666665432211 010 11111 1134667776653 35555442
Q ss_pred cccCCCceEEEEeCCCC--eEEEec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCc-
Q 016318 209 FSAEDTGRVLKYDPTTK--QTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDN- 284 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~--~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~- 284 (391)
.+++|..+|..++ +..... ..-..-|.+++.|-+.+++.+-+...+|..+++..-+. .+..+++.-+.
T Consensus 248 ----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~e~H~dev 319 (422)
T KOG0264|consen 248 ----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTFEGHEDEV 319 (422)
T ss_pred ----CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----CceeccCCCcce
Confidence 2578999998753 221111 12345689999998888888777788999998764321 12223332222
Q ss_pred --eEeCCCCC-EEEEEcCCCchhhhhh
Q 016318 285 --VRTNEKGE-FWVAIHCRRSLYSHLM 308 (391)
Q Consensus 285 --i~~d~~G~-lwva~~~~~~~~~~~l 308 (391)
+..+++.. ++.+....+++.++.+
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEec
Confidence 34455443 5555555555544433
No 356
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=53.47 E-value=86 Score=31.96 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=46.3
Q ss_pred ccCccceEEEecCCCcEEEEECCCCeEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCC-CEEEEeCCCcccchhhee
Q 016318 129 ICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQ 206 (391)
Q Consensus 129 ~~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~ 206 (391)
..|.|..+.|++..-.|+||+ .+.|..+|..... ++. ...+ ......|++++.| +|.++..
T Consensus 565 skG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe---lvKkL~tg--~kwiS~msihp~GDnli~gs~----------- 627 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE---LVKKLLTG--SKWISSMSIHPNGDNLILGSY----------- 627 (733)
T ss_pred cCCceeEEEecCCCceEEEEe-ccceEEEehhHHH---HHHHHhcC--CeeeeeeeecCCCCeEEEecC-----------
Confidence 367889999998667789986 4556666654321 111 1122 2467889999987 6766652
Q ss_pred eecccCCCceEEEEeCC
Q 016318 207 LVFSAEDTGRVLKYDPT 223 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~ 223 (391)
.++++.||.+
T Consensus 628 -------d~k~~WfDld 637 (733)
T KOG0650|consen 628 -------DKKMCWFDLD 637 (733)
T ss_pred -------CCeeEEEEcc
Confidence 4678888764
No 357
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=53.27 E-value=1.6e+02 Score=28.88 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=39.5
Q ss_pred eEEEEeCCCCeEEEeccCCCCcc-------eEEEccCCCEEEEEeCCCCeEEEEEeccccC-ccceeecccCCCCCceE
Q 016318 216 RVLKYDPTTKQTTVLLRNLQFPN-------GLSLSKDKSFFVFCEGSVGRLHKYWLIGEKA-GNLEAFAILPGYPDNVR 286 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~~~~~~~n-------gia~~~d~~~l~v~et~~~~I~~~~~~g~~~-g~~~~~~~~~g~p~~i~ 286 (391)
..++||..++.+......-.+|. .++. .||+++|+ ...+..+..-++.+... .....|..-.+.||+|.
T Consensus 110 ~gYrYdgat~~l~~~~~~~~~p~y~~g~v~Dv~~-~dGryVw~-~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Iv 186 (469)
T PF11134_consen 110 KGYRYDGATKTLSNWPTDEGYPQYDLGDVVDVTR-LDGRYVWV-KPGTGYFFVSDLEDETKPDRYLDFYTAESQPDNIV 186 (469)
T ss_pred ceEEEechhhHhhcCCCcCcccccCccceeEEEe-ccceEEEE-eCCCceEEEeecccccCcchhhhhhhhccCCCceE
Confidence 68999988776655544333322 2333 48888874 35556677767665432 12223444456788753
No 358
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=52.50 E-value=2e+02 Score=29.98 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=41.4
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC-eEEEeccCCCCcceEEEccCCCEEEEEeCCC
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK-QTTVLLRNLQFPNGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~~~ngia~~~d~~~l~v~et~~ 256 (391)
-...++++++|++..+...+ .......|..|+..+= +...+...-....-++++||+++|+-+ +..
T Consensus 527 Ev~~l~~s~~gnliASaCKS------------~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv-sRD 593 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKS------------SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV-SRD 593 (764)
T ss_pred eEEEEEecCCCCEEeehhhh------------CCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe-ecC
Confidence 35678889999998886321 1122345667776432 222222222234568999999976544 434
Q ss_pred CeEEEEEe
Q 016318 257 GRLHKYWL 264 (391)
Q Consensus 257 ~~I~~~~~ 264 (391)
+.+..|..
T Consensus 594 Rt~sl~~~ 601 (764)
T KOG1063|consen 594 RTVSLYEV 601 (764)
T ss_pred ceEEeeee
Confidence 34444443
No 359
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=51.86 E-value=1.9e+02 Score=26.28 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=31.6
Q ss_pred EEecCCCcEEEEECCC---C--eEEEeCCCCeeEEceeccCCCcccCCcceeecC-CCCEEEEe
Q 016318 137 RFDKKTGDLYIADAYF---G--LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD-EGNVYFTD 194 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~~---g--l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~-~G~ly~td 194 (391)
+|.- -|.||+.+... . -+.+|..+++.+.+.-.+. .+......|.-+| |..||+=|
T Consensus 176 aFmv-CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~-~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 176 AFMV-CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP-NPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eeeE-eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec-cccCceEeeeECCCCCeEEEEE
Confidence 4554 68899987763 2 4777887775443322221 1223444555566 45677766
No 360
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=51.84 E-value=48 Score=19.48 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=20.3
Q ss_pred cCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 016318 232 RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKY 262 (391)
Q Consensus 232 ~~~~~~ngia~~~d~~~l~v~et~~~~I~~~ 262 (391)
......+.++++|+++.+..+ ...+.|..+
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~-~~D~~i~vw 38 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASG-SSDGTIRVW 38 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEE-ETTSEEEEE
T ss_pred CCCCcEEEEEEecccccceee-CCCCEEEEE
Confidence 334567789999999865554 455666655
No 361
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=51.68 E-value=3.8e+02 Score=30.18 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.7
Q ss_pred CceEEEEeCCCCeE---EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 214 TGRVLKYDPTTKQT---TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 214 ~g~l~~~d~~~~~~---~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.+++..+|+..... ......-.....++++|-++++.+. |.++.+..+++.
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG-ts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG-TSRGQLVLWDLR 1225 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEe-cCCceEEEEEee
Confidence 35788888754321 1111112346689999999966655 666777776654
No 362
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=50.12 E-value=2e+02 Score=26.03 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=56.0
Q ss_pred EEecCCCcEEEEECCCCe-EEE-eCCCCeeEEceeccCCCccc-CCcceeecCCCC-EEEEeCCCcccchhheeeecccC
Q 016318 137 RFDKKTGDLYIADAYFGL-MKV-GPEGGLATSLATEAEGVPLR-FTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 137 ~~d~~~g~L~V~d~~~gl-~~~-d~~~g~~~~~~~~~~~~~~~-~~~~l~~d~~G~-ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
.+|+ ++.+|+.+..... ..+ +..++..+...-...+ .. ....+.+++||. +-+.... .
T Consensus 72 S~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~--~~~~I~~l~vSpDG~RvA~v~~~---------------~ 133 (253)
T PF10647_consen 72 SWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG--LRGRITALRVSPDGTRVAVVVED---------------G 133 (253)
T ss_pred cccC-CCCEEEEEcCCCceEEEEecCCCcceeEEecccc--cCCceEEEEECCCCcEEEEEEec---------------C
Confidence 6787 6999999876543 222 2233333322111111 11 567788899984 3333211 1
Q ss_pred CCceEEEEe---CCCCeE-------EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEE-EEeccc
Q 016318 213 DTGRVLKYD---PTTKQT-------TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHK-YWLIGE 267 (391)
Q Consensus 213 ~~g~l~~~d---~~~~~~-------~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~-~~~~g~ 267 (391)
..++|+.-- ..++.. +...........+++.+++..++++......++. +..+|.
T Consensus 134 ~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 134 GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 123333221 111211 1111223456789999998855555555555666 556663
No 363
>PLN02193 nitrile-specifier protein
Probab=49.60 E-value=2.8e+02 Score=27.68 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=43.8
Q ss_pred CCcEEEEECC------CCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318 142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 142 ~g~L~V~d~~------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
++.|||.... ..+.++|+.+.+.+.+.........+.-..++ .-+|.+|+.-... +....
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~-------------g~~~~ 343 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFN-------------GCEVD 343 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcEEEEECCC-------------CCccC
Confidence 5788886432 23788999988877664321111111111222 2367888764210 11124
Q ss_pred eEEEEeCCCCeEEEec
Q 016318 216 RVLKYDPTTKQTTVLL 231 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~ 231 (391)
.+++||+++.+.+.+.
T Consensus 344 dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 344 DVHYYDPVQDKWTQVE 359 (470)
T ss_pred ceEEEECCCCEEEEec
Confidence 6999999999887764
No 364
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=48.21 E-value=54 Score=19.65 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=19.1
Q ss_pred CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 187 EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 187 ~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
+|++|.+++.- .....|.|++++++++-
T Consensus 1 dg~lYGTT~~G------------G~~~~GTvf~~~~~g~~ 28 (34)
T TIGR03803 1 GGTLYGTTSGG------------GASGFGTLYRLSTAGGT 28 (34)
T ss_pred CCcEEEEcccC------------CCCCceeEEEEcCCCCe
Confidence 57889987531 12346789999987654
No 365
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=47.35 E-value=67 Score=32.22 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=54.7
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIAD 149 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d 149 (391)
.+..+++.+||+.+-+-+.||-+..++-+...... .+..-.|--+++++++ +|+++|..
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--------------------~mkSYFGGLLCvcWSP-DGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--------------------VMKSYFGGLLCVCWSP-DGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHH--------------------HHHhhccceEEEEEcC-CccEEEec
Confidence 78899999999978888888866666544111110 0011145567889999 77776654
Q ss_pred CCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecC
Q 016318 150 AYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDD 186 (391)
Q Consensus 150 ~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~ 186 (391)
.... |.++....+ +.++.. +| .-.+.+.+++|+
T Consensus 351 GEDDLVtVwSf~er--RVVARG-qG-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 351 GEDDLVTVWSFEER--RVVARG-QG-HKSWVSVVAFDP 384 (636)
T ss_pred CCcceEEEEEeccc--eEEEec-cc-cccceeeEeecc
Confidence 3333 333343322 333322 22 235889999986
No 366
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=46.95 E-value=2.2e+02 Score=25.77 Aligned_cols=165 Identities=16% Similarity=0.070 Sum_probs=89.0
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC--ceeEEEeecCCCcccCCCCCCccccccccCccCcc-ceEEEecCC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL--KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRP-LGLRFDKKT 142 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P-~gi~~d~~~ 142 (391)
-...|+-.++. +|.++|-......|+|++-. ....-....... . . ....-..++ ..|.|..|+
T Consensus 67 ~~~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~-~--~---------n~~~y~~~~~t~iD~AvDE 132 (250)
T PF02191_consen 67 YPWQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAG-Y--N---------NRFPYYWSGYTDIDFAVDE 132 (250)
T ss_pred ceeccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccc-c--c---------cccceecCCCceEEEEEcC
Confidence 44678877775 57866766667899999887 222111111110 0 0 000001122 234443336
Q ss_pred CcEEEEEC---CCC---eEEEeCCCCeeEEcee-ccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318 143 GDLYIADA---YFG---LMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 143 g~L~V~d~---~~g---l~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
.-|||-=+ ..| |-++|+++=.++.-.. .... -..-+ ++---|.||++++... .+.
T Consensus 133 ~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k--~~~~n--aFmvCGvLY~~~s~~~--------------~~~ 194 (250)
T PF02191_consen 133 NGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPK--RSAGN--AFMVCGVLYATDSYDT--------------RDT 194 (250)
T ss_pred CCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCc--hhhcc--eeeEeeEEEEEEECCC--------------CCc
Confidence 77988622 234 6778888765554332 2211 11222 3444689999986521 113
Q ss_pred eE-EEEeCCCCeEEEeccC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 216 RV-LKYDPTTKQTTVLLRN----LQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 216 ~l-~~~d~~~~~~~~~~~~----~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
+| +.||..+++.+.+.-. ......|..+|..+.||+=+. +.+..|++
T Consensus 195 ~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 195 EIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred EEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 44 6799887766544222 223446778888887988764 55666654
No 367
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=45.57 E-value=2.8e+02 Score=26.82 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=15.2
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeCC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~~ 98 (391)
++|++. +|+ +|+-...|+++.++.+
T Consensus 203 ~DIi~~-kGk-fYAvD~~G~l~~i~~~ 227 (373)
T PLN03215 203 SDIIVH-KGQ-TYALDSIGIVYWINSD 227 (373)
T ss_pred eEEEEE-CCE-EEEEcCCCeEEEEecC
Confidence 344443 566 6666666777777654
No 368
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.00 E-value=1.7e+02 Score=27.36 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred EEEEECCCCeEEEeCCCCeeEEceeccCC---CcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEE
Q 016318 145 LYIADAYFGLMKVGPEGGLATSLATEAEG---VPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKY 220 (391)
Q Consensus 145 L~V~d~~~gl~~~d~~~g~~~~~~~~~~~---~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~ 220 (391)
+=..+-+.+|..+|.+.++++.+....-. .--.-..+|.-|| +..|+++-.- +..+-+|+..
T Consensus 71 IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D--------------Gh~nLGvy~l 136 (339)
T PF09910_consen 71 IDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD--------------GHANLGVYSL 136 (339)
T ss_pred EEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC--------------CcceeeeEEE
Confidence 33344567899999999999998754211 1123456788888 5678888521 2334579999
Q ss_pred eCCCCeEEEeccC
Q 016318 221 DPTTKQTTVLLRN 233 (391)
Q Consensus 221 d~~~~~~~~~~~~ 233 (391)
|.++|+.+.+.+.
T Consensus 137 dr~~g~~~~L~~~ 149 (339)
T PF09910_consen 137 DRRTGKAEKLSSN 149 (339)
T ss_pred cccCCceeeccCC
Confidence 9999999887644
No 369
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=41.75 E-value=87 Score=31.46 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=37.3
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec-cCCCCcceEEEccCCCEEEEEeCCC
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL-RNLQFPNGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~ngia~~~d~~~l~v~et~~ 256 (391)
.+|.+++.+||....+.+. ++.=||+.|| +.++.-++ .-+..--.++++|||++|... -..
T Consensus 292 ~in~f~FS~DG~~LA~VSq---------------DGfLRvF~fd--t~eLlg~mkSYFGGLLCvcWSPDGKyIvtG-GED 353 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ---------------DGFLRIFDFD--TQELLGVMKSYFGGLLCVCWSPDGKYIVTG-GED 353 (636)
T ss_pred cccceeEcCCCceEEEEec---------------CceEEEeecc--HHHHHHHHHhhccceEEEEEcCCccEEEec-CCc
Confidence 5788888888877766643 1112444444 33322221 112234578999999965443 344
Q ss_pred CeEEEEE
Q 016318 257 GRLHKYW 263 (391)
Q Consensus 257 ~~I~~~~ 263 (391)
.-|.++.
T Consensus 354 DLVtVwS 360 (636)
T KOG2394|consen 354 DLVTVWS 360 (636)
T ss_pred ceEEEEE
Confidence 4444443
No 370
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=41.52 E-value=4e+02 Score=27.14 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=50.2
Q ss_pred eEEEEEeccccCccceeec--ccCCCC-CceEeCC-CCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEee
Q 016318 258 RLHKYWLIGEKAGNLEAFA--ILPGYP-DNVRTNE-KGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHV 333 (391)
Q Consensus 258 ~I~~~~~~g~~~g~~~~~~--~~~g~p-~~i~~d~-~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (391)
.|+|+.+++ ++.+... ..||.. +..++|+ +|.|=||+........ .
T Consensus 249 ~I~kf~~~~---~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~---------------------------~ 298 (521)
T PF09826_consen 249 TIYKFALDG---GKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWD---------------------------S 298 (521)
T ss_pred EEEEEEccC---CcEEEEEEEEECcEEcccccEeccCCEEEEEEecCccccc---------------------------C
Confidence 477777665 3333332 256643 4466665 5567777765421000 0
Q ss_pred cCccceEEEEECCCCCEEEEEeC-CCCCeeeceeEEEEECCEEEEecCCC
Q 016318 334 GGRLHAMAVKYSPEGKILQVLED-SKGKVVKAISEVEEKDGKLWMGSVLM 382 (391)
Q Consensus 334 ~~~~~~~v~~~d~~g~~~~~~~~-~~g~~~~~is~~~~~~g~Lylgs~~~ 382 (391)
.......+..+|.+-+++-.+.+ ..|+ .|-+++.-+++.|+-++..
T Consensus 299 ~~~s~N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrq 345 (521)
T PF09826_consen 299 EDTSSNNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQ 345 (521)
T ss_pred CCCceEEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEee
Confidence 01222446667777777666654 3344 3566777777777777665
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=41.45 E-value=3e+02 Score=25.63 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=32.1
Q ss_pred cceEEEecCCCcEEEEECCCCe--EEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeC
Q 016318 133 PLGLRFDKKTGDLYIADAYFGL--MKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDS 195 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~d~~~gl--~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~ 195 (391)
...+... ++.++|+|..+++ ++++.+..++..+..... ..++.++.+-.++ .+.++|.
T Consensus 132 i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~---~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 132 ITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQ---PRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS----BEEEEEEEE-SSSEEEEEET
T ss_pred EEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCC---CccEEEEEEecCCcEEEEEcC
Confidence 3444444 5689999999985 566776555666655432 1234444433222 5666664
No 372
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=41.13 E-value=2.7e+02 Score=25.12 Aligned_cols=127 Identities=14% Similarity=0.254 Sum_probs=63.4
Q ss_pred eEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCC----CeEEE
Q 016318 154 LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT----KQTTV 229 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~----~~~~~ 229 (391)
-..+|+.+++++.+.... -.|..+=++.+||++.++.... .+...+-.|++.+ .....
T Consensus 48 s~~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~--------------~G~~~ir~~~p~~~~~~~~w~e 109 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDN--------------DGNKAIRIFTPCTSDGTCDWTE 109 (243)
T ss_pred EEEEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCC--------------ccccceEEEecCCCCCCCCceE
Confidence 446788888888764322 2467777788899988775221 1122344566543 22222
Q ss_pred eccCC----CCcceEEEccCCCEEEEEeCCCCeEEEEEec-cccCccce--eeccc-CCCCCc----eEeCCCCCEEEEE
Q 016318 230 LLRNL----QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI-GEKAGNLE--AFAIL-PGYPDN----VRTNEKGEFWVAI 297 (391)
Q Consensus 230 ~~~~~----~~~ngia~~~d~~~l~v~et~~~~I~~~~~~-g~~~g~~~--~~~~~-~g~p~~----i~~d~~G~lwva~ 297 (391)
....+ -+|....+ +||+.+.+.-+. +--+-+... ....+... ..... ...+.+ +.+-++|++++..
T Consensus 110 ~~~~m~~~RWYpT~~~L-~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 110 SPNDMQSGRWYPTATTL-PDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CcccccCCCccccceEC-CCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 22223 35554444 699966665443 222333221 11111111 11110 012333 5677999988765
Q ss_pred cCC
Q 016318 298 HCR 300 (391)
Q Consensus 298 ~~~ 300 (391)
...
T Consensus 188 n~~ 190 (243)
T PF07250_consen 188 NRG 190 (243)
T ss_pred cCC
Confidence 543
No 373
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=40.64 E-value=4.5e+02 Score=27.50 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=65.9
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEEeCC-c---eeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecC
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFWDGL-K---WTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKK 141 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~ 141 (391)
|--.+-.++-..+.+..|.+++.|..+..|.++ . |......+.- ....+-=.|-.+.+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~-----------------gg~a~GF~g~lw~~- 326 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV-----------------GGSAGGFWGGLWSP- 326 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc-----------------cccccceeeEEEcC-
Confidence 434466677778888668999999999999887 3 5544333211 00011124556777
Q ss_pred CCcEEEEECCCC-eEEEeC-CCCeeEEceeccCCCcccCCcceeecCCCCEEEEeC
Q 016318 142 TGDLYIADAYFG-LMKVGP-EGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDS 195 (391)
Q Consensus 142 ~g~L~V~d~~~g-l~~~d~-~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~ 195 (391)
+++.+++..+.| ...+-. +....... ...........+++-+|.|.++++.+
T Consensus 327 n~~~ii~~g~~Gg~hlWkt~d~~~w~~~--~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 327 NSNVIIAHGRTGGFHLWKTKDKTFWTQE--PVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred CCCEEEEecccCcEEEEeccCccceeec--cccccccccceeeeecCCCCEEEEec
Confidence 778899988755 444432 22222211 11112245678899999999888853
No 374
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=39.14 E-value=51 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=18.5
Q ss_pred ceEEEccCCCeeEEEec-------CCEEEEEeCC
Q 016318 72 ESMAFDPLGRGPYTGVA-------DGRILFWDGL 98 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~-------~g~I~~~~~~ 98 (391)
.++++.+||+++.++.. +..|.|++++
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 47889999997777653 2346666555
No 375
>PF13964 Kelch_6: Kelch motif
Probab=38.93 E-value=59 Score=20.75 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 186 DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 186 ~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
-+|+||+....... ......+++||+++++.+.+.
T Consensus 10 ~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEECC
Confidence 36688887633110 233568999999999887763
No 376
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=38.58 E-value=4.8e+02 Score=27.17 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=28.2
Q ss_pred ccccceeccccccCcceEEEc-------cCCCeeEEEecCCEEEEEeCC
Q 016318 57 LQNSEIKFLNQIQGPESMAFD-------PLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 57 l~~~~~~~~~~~~gPe~i~~d-------~~G~~ly~~~~~g~I~~~~~~ 98 (391)
|+.+=..-.|++.+||++-.. .-|+.+|+++...+++.+|.+
T Consensus 184 L~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~ 232 (773)
T COG4993 184 LQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTPHNRVFALDAA 232 (773)
T ss_pred cceeEEEecCcccCCCCcccccccccceEECCEEEEecCcceeEEeecc
Confidence 333434556788888882211 124569999999999999887
No 377
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=38.55 E-value=3.4e+02 Score=25.50 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=29.8
Q ss_pred CCcEEEEECC------------CCeEEEeCCCCeeEEceeccCCCcccCCcceee-cCCCCEEEEeC
Q 016318 142 TGDLYIADAY------------FGLMKVGPEGGLATSLATEAEGVPLRFTNDLDI-DDEGNVYFTDS 195 (391)
Q Consensus 142 ~g~L~V~d~~------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~-d~~G~ly~td~ 195 (391)
++.|||.-.. ..++++|+.+++.+.+.... +.......++ .-+|.||+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~---p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS---PVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC---CCcccceeEEEEeCCEEEEEcC
Confidence 5789987542 23888999988877664211 1111111122 34789999863
No 378
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.82 E-value=4.5e+02 Score=26.71 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=83.9
Q ss_pred CcceEEEccCCCeeEEEecCCEEEEEeCC-ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRILFWDGL-KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIA 148 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~ 148 (391)
+|.+..-......+..++.||+++.++.. +++. ..+..++..++-++++ +|.-.+.
T Consensus 65 ~~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE~----------------------sv~AH~~A~~~gRW~~-dGtgLlt 121 (737)
T KOG1524|consen 65 GGRSSGGGKGSDTLLICSNDGRFVILNKSARVER----------------------SISAHAAAISSGRWSP-DGAGLLT 121 (737)
T ss_pred cccccCCCCCcceEEEEcCCceEEEecccchhhh----------------------hhhhhhhhhhhcccCC-CCceeee
Confidence 44444433334457778889988888665 2211 1112244444556666 5655555
Q ss_pred ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE
Q 016318 149 DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT 227 (391)
Q Consensus 149 d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~ 227 (391)
....|+.++=..+|..+....+.+ ...+.++-+|+. ++.++.....+ +-...++..++++-..+|-+
T Consensus 122 ~GEDG~iKiWSrsGMLRStl~Q~~----~~v~c~~W~p~S~~vl~c~g~h~~--------IKpL~~n~k~i~WkAHDGii 189 (737)
T KOG1524|consen 122 AGEDGVIKIWSRSGMLRSTVVQNE----ESIRCARWAPNSNSIVFCQGGHIS--------IKPLAANSKIIRWRAHDGLV 189 (737)
T ss_pred ecCCceEEEEeccchHHHHHhhcC----ceeEEEEECCCCCceEEecCCeEE--------EeecccccceeEEeccCcEE
Confidence 455676666555565443221111 234555666643 45555422100 00112234555555444432
Q ss_pred EEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccC-CCC-CceEeCCCCCEEEEEc
Q 016318 228 TVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILP-GYP-DNVRTNEKGEFWVAIH 298 (391)
Q Consensus 228 ~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~-g~p-~~i~~d~~G~lwva~~ 298 (391)
- .+.+++..+ +.++....-+...++..|. ..|..-+ .+| .+++..++-.+.++..
T Consensus 190 L----------~~~W~~~s~-lI~sgGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~ 246 (737)
T KOG1524|consen 190 L----------SLSWSTQSN-IIASGGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY 246 (737)
T ss_pred E----------EeecCcccc-ceeecCCceeEEeecccCc-----ccccCChhccceeeeeeccccceeeeee
Confidence 2 234555666 5555443444444433332 2222111 233 6788888843444443
No 379
>PLN02153 epithiospecifier protein
Probab=37.67 E-value=3.5e+02 Score=25.41 Aligned_cols=84 Identities=20% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCcEEEEECC------CCeEEEeCCCCeeEEceeccC-CCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCC
Q 016318 142 TGDLYIADAY------FGLMKVGPEGGLATSLATEAE-GVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDT 214 (391)
Q Consensus 142 ~g~L~V~d~~------~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~ 214 (391)
++.|||--.. +.++++|+.+.+.+.+..... ..+......-++.-++.||+......... .. .....
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~---~~---~~~~~ 158 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL---MK---TPERF 158 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc---cC---CCccc
Confidence 5678876332 248899999888776542211 11111112223334678888753210000 00 00011
Q ss_pred ceEEEEeCCCCeEEEec
Q 016318 215 GRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~ 231 (391)
..+.+||+++.+.+.+.
T Consensus 159 ~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 159 RTIEAYNIADGKWVQLP 175 (341)
T ss_pred ceEEEEECCCCeEeeCC
Confidence 35889999998887764
No 380
>PF14977 FAM194: FAM194 protein
Probab=36.91 E-value=2.9e+02 Score=24.27 Aligned_cols=18 Identities=11% Similarity=0.460 Sum_probs=12.1
Q ss_pred CceEeCCCCCEEEEEcCC
Q 016318 283 DNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 283 ~~i~~d~~G~lwva~~~~ 300 (391)
.+-+.+++|++|+.+...
T Consensus 69 ~g~~y~~~g~~~l~l~~~ 86 (208)
T PF14977_consen 69 HGTCYHPNGNIWLVLNQE 86 (208)
T ss_pred CEEEEcCCCCEEEEEECC
Confidence 456667778888776543
No 381
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.39 E-value=4.5e+02 Score=26.31 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred EEEecCCCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCc
Q 016318 136 LRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTG 215 (391)
Q Consensus 136 i~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g 215 (391)
+...+ +|+|+++.. ..+.++|..|..+..+. .++....+-.++...++|++.+..+........-- ...-..
T Consensus 153 ~~~l~-nG~ll~~~~-~~~~e~D~~G~v~~~~~--l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~----~~~~~D 224 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG-NRLYEIDLLGKVIWEYD--LPGGYYDFHHDIDELPNGNLLILASETKYVDEDKD----VDTVED 224 (477)
T ss_dssp EEE-T-TS-EEEEEB-TEEEEE-TT--EEEEEE----TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-E----E---S-
T ss_pred eeEcC-CCCEEEecC-CceEEEcCCCCEEEeee--cCCcccccccccEECCCCCEEEEEeecccccCCCC----ccEecC
Confidence 44555 788888764 67999999866444432 12211234678899999987776532111100000 000123
Q ss_pred eEEEEeCCCCeEEEec---cCC-------------------------CCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 216 RVLKYDPTTKQTTVLL---RNL-------------------------QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~---~~~-------------------------~~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
.|+.+| .+|++.... +-+ ...|+|..++..+.|+++....+.|++++..
T Consensus 225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 466666 444432211 100 1257899998666688987777799999843
No 382
>PRK10115 protease 2; Provisional
Probab=36.10 E-value=5.5e+02 Score=27.17 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=35.5
Q ss_pred ceEEEEeCCCCeE--EEeccCCCCcceEEEccCCCEEEEEeC-----CCCeEEEEEeccccCccceeec
Q 016318 215 GRVLKYDPTTKQT--TVLLRNLQFPNGLSLSKDKSFFVFCEG-----SVGRLHKYWLIGEKAGNLEAFA 276 (391)
Q Consensus 215 g~l~~~d~~~~~~--~~~~~~~~~~ngia~~~d~~~l~v~et-----~~~~I~~~~~~g~~~g~~~~~~ 276 (391)
-.|+..|..+|+. ..+ .... .++++++|++.++++.. ....|+++++..+......+|.
T Consensus 153 ~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~ 218 (686)
T PRK10115 153 YGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYE 218 (686)
T ss_pred EEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEe
Confidence 3578888887752 211 1212 45899999988877633 2257899887654222333444
No 383
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.85 E-value=1.2e+02 Score=31.40 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=21.6
Q ss_pred cCccceEEEecCCCcEEEEECCCCeEEEeCC
Q 016318 130 CGRPLGLRFDKKTGDLYIADAYFGLMKVGPE 160 (391)
Q Consensus 130 ~g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~ 160 (391)
..+..++.++++.-++|.||..+-|...-.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEec
Confidence 4567789999866679999876555444433
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=35.83 E-value=65 Score=17.28 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=17.9
Q ss_pred cceEEEccCCCeeEEEecCCEEEEE
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFW 95 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~ 95 (391)
..++.+.++++.+.++..++.+..+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 3567777777777788888877654
No 385
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=35.10 E-value=4e+02 Score=25.32 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred eecccCCCceEEEEeCCCCeEEEeccCCC-CcceEEEcc--CCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC
Q 016318 207 LVFSAEDTGRVLKYDPTTKQTTVLLRNLQ-FPNGLSLSK--DKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD 283 (391)
Q Consensus 207 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~ngia~~~--d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~ 283 (391)
.++.+-.+|.+-.||+.+++.-....+.. ..|++.|.. ....++.+ +..+.|..+++.-........+.+.|+-|.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC-SSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe-ccCCeEEEEEeecchhhhheeccCCCCCcc
Q ss_pred c-eEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceeeeEEeecCccceEEEEEC--CCCCEEEEEeCCCCC
Q 016318 284 N-VRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTHYLIHVGGRLHAMAVKYS--PEGKILQVLEDSKGK 360 (391)
Q Consensus 284 ~-i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~d--~~g~~~~~~~~~~g~ 360 (391)
. +...-++++..+........ +.++-+| ...+.++.|.+ .
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~----------------------------------A~v~lwDvR~~qq~l~~~~e---S 163 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSD----------------------------------ASVVLWDVRSEQQLLRQLNE---S 163 (376)
T ss_pred eEeeccCcCCeEEeccccccCc----------------------------------eEEEEEEeccccchhhhhhh---h
Q ss_pred eeeceeEEEEEC--CEEEEecCCCCeEEEEeCC
Q 016318 361 VVKAISEVEEKD--GKLWMGSVLMPFVAVYDLS 391 (391)
Q Consensus 361 ~~~~is~~~~~~--g~Lylgs~~~~~i~~~~~~ 391 (391)
....||.+..+- -+|.+++.-.-.|-+|++.
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecC
No 386
>PLN02153 epithiospecifier protein
Probab=33.98 E-value=4e+02 Score=25.00 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=42.1
Q ss_pred CCcEEEEECC--------CCeEEEeCCCCeeEEceeccCCCcccCCcce-eecCCCCEEEEeCCCcccchhheeeecccC
Q 016318 142 TGDLYIADAY--------FGLMKVGPEGGLATSLATEAEGVPLRFTNDL-DIDDEGNVYFTDSSTNYQRRNFMQLVFSAE 212 (391)
Q Consensus 142 ~g~L~V~d~~--------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l-~~d~~G~ly~td~~~~~~~~~~~~~~~~~~ 212 (391)
++.|||.-.. +.++++|+.+.+.+.+..... .+.....+. ++.-++.||+..... +..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~------------~~~ 98 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-VPRISCLGVRMVAVGTKLYIFGGRD------------EKR 98 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-CCCCccCceEEEEECCEEEEECCCC------------CCC
Confidence 5688885322 248899998887665432111 111111122 222356788875211 011
Q ss_pred CCceEEEEeCCCCeEEEec
Q 016318 213 DTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~~~ 231 (391)
....+++||+.+.+.+.+.
T Consensus 99 ~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 99 EFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred ccCcEEEEECCCCEEEEec
Confidence 1246899999998887653
No 387
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.96 E-value=4.1e+02 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=16.2
Q ss_pred CcceEEEccCCCeeEEEecCCEEE
Q 016318 70 GPESMAFDPLGRGPYTGVADGRIL 93 (391)
Q Consensus 70 gPe~i~~d~~G~~ly~~~~~g~I~ 93 (391)
.-.+|.|.+.|.++.+++.|+.-.
T Consensus 192 SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 192 SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred ceeeEEeccccceEEEccCCcchH
Confidence 455777877777777777775433
No 388
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.62 E-value=5.6e+02 Score=26.57 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=23.0
Q ss_pred eEEEecCCCcEEEEECCCCeEEEeCCCCeeEE
Q 016318 135 GLRFDKKTGDLYIADAYFGLMKVGPEGGLATS 166 (391)
Q Consensus 135 gi~~d~~~g~L~V~d~~~gl~~~d~~~g~~~~ 166 (391)
.+..|..+..||+....+.|+.+|..+-.+..
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCc
Confidence 45677645568888777889999987654443
No 389
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.49 E-value=2e+02 Score=30.05 Aligned_cols=30 Identities=37% Similarity=0.436 Sum_probs=25.6
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~ 98 (391)
.+-|++.++....++-+|+.+|.|-.||..
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehh
Confidence 467899999888878889999999889876
No 390
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.21 E-value=2.2e+02 Score=29.31 Aligned_cols=28 Identities=4% Similarity=0.068 Sum_probs=21.3
Q ss_pred EEEccCCCEEEEEeCCCCeEEEEEecccc
Q 016318 240 LSLSKDKSFFVFCEGSVGRLHKYWLIGEK 268 (391)
Q Consensus 240 ia~~~d~~~l~v~et~~~~I~~~~~~g~~ 268 (391)
+..-| ++..+|+..+..++..+++++.+
T Consensus 106 l~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 106 LKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred eccCC-CceeEEEccCCceeeeeeeccce
Confidence 44556 77788888888899999887653
No 391
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.11 E-value=4.3e+02 Score=26.30 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=89.7
Q ss_pred ccceEEEecCCCc-EEEEECCCCeEEEeCCCCeeEEcee---ccCC-CcccCCcceeecCCCCEEEEeCC-Cccc-----
Q 016318 132 RPLGLRFDKKTGD-LYIADAYFGLMKVGPEGGLATSLAT---EAEG-VPLRFTNDLDIDDEGNVYFTDSS-TNYQ----- 200 (391)
Q Consensus 132 ~P~gi~~d~~~g~-L~V~d~~~gl~~~d~~~g~~~~~~~---~~~~-~~~~~~~~l~~d~~G~ly~td~~-~~~~----- 200 (391)
-|.-+.+.. +|+ |.++.....|-.+|-.++++..-.. .... .-+-...-+|++....+||=|.. +...
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 378888887 565 5555444459999988875432111 1111 11223344677777778887632 1110
Q ss_pred ----chhhe---eeecccCCCceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccc
Q 016318 201 ----RRNFM---QLVFSAEDTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL 272 (391)
Q Consensus 201 ----~~~~~---~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~ 272 (391)
+-+|+ +.+.....+|-+-..|-.+|++-. +..+.....-++..|-+..+.+. -.++ ...+|- + ...
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~G-hsnG-tVSlWS--P--~sk 283 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLG-HSNG-TVSLWS--P--NSK 283 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEc-CCCc-eEEecC--C--CCc
Confidence 01121 123344445555555666665421 12222222334444545433333 2233 333331 1 112
Q ss_pred eeecc---cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCc
Q 016318 273 EAFAI---LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYP 312 (391)
Q Consensus 273 ~~~~~---~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~ 312 (391)
+.+.. -.|-..+|++|++|++.+++...+.+-.|.++.+-
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 22222 34556889999999998888877777666666554
No 392
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=33.09 E-value=4.6e+02 Score=25.36 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=84.4
Q ss_pred cceEEEecC-CCcEEEEECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCC-CCEEEEeCCCcccchhheeeecc
Q 016318 133 PLGLRFDKK-TGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFS 210 (391)
Q Consensus 133 P~gi~~d~~-~g~L~V~d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~-G~ly~td~~~~~~~~~~~~~~~~ 210 (391)
-.|+.+++. .|+|.-+|..++|+...+.+|..+.=..++.+ .-....++.-.|. .+++++-+-
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~-------------- 278 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC-------------- 278 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec--------------
Confidence 356666652 57788888888888888887766543233333 2345677777764 466666532
Q ss_pred cCCCceEEEEeCCCCeEE--Eec-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccc-eeecccCCCCCceE
Q 016318 211 AEDTGRVLKYDPTTKQTT--VLL-RNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNL-EAFAILPGYPDNVR 286 (391)
Q Consensus 211 ~~~~g~l~~~d~~~~~~~--~~~-~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~-~~~~~~~g~p~~i~ 286 (391)
+|.+-.+|...+.-+ +.. ..-...|-|.++.+.. ++.+-...+.+...++..-+.++. ..|.-...-...|.
T Consensus 279 ---DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 279 ---DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE 354 (440)
T ss_pred ---CceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE
Confidence 577778887666221 111 1123567788877776 455544445555555543222311 12221122234565
Q ss_pred eCCCC-CEEEEEcCCCchhhhhhh
Q 016318 287 TNEKG-EFWVAIHCRRSLYSHLMA 309 (391)
Q Consensus 287 ~d~~G-~lwva~~~~~~~~~~~l~ 309 (391)
..+.- .+..+......+-+|.|+
T Consensus 355 W~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccccCceEEeccCCCcEEEEEee
Confidence 55432 244444444444443333
No 393
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=32.99 E-value=4.9e+02 Score=25.71 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=24.4
Q ss_pred EEEEECCCCCEEEEEeCC-CCCeeeceeEEEEECCEEEEecCCC
Q 016318 340 MAVKYSPEGKILQVLEDS-KGKVVKAISEVEEKDGKLWMGSVLM 382 (391)
Q Consensus 340 ~v~~~d~~g~~~~~~~~~-~g~~~~~is~~~~~~g~Lylgs~~~ 382 (391)
.+..+|.+++.+-.++.. .|+ .+-.++..++.+|+-++..
T Consensus 407 ~vYilDe~lnvvGkltGl~~gE---RIYAvRf~gdv~yiVTfrq 447 (603)
T COG4880 407 AVYILDENLNVVGKLTGLAPGE---RIYAVRFVGDVLYIVTFRQ 447 (603)
T ss_pred eeEEEcCCCcEEEEEeccCCCc---eEEEEEEeCceEEEEEEec
Confidence 455667777766666542 233 2456667777788777654
No 394
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=32.87 E-value=74 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=24.8
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~ 98 (391)
.|-.++.+.+|++++-++.+||||..++-.
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEec
Confidence 366788899999988889999999888543
No 395
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=32.37 E-value=3.7e+02 Score=27.36 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=49.3
Q ss_pred cCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCcc--eEEEcc-CCCEEEEEe
Q 016318 177 RFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPN--GLSLSK-DKSFFVFCE 253 (391)
Q Consensus 177 ~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~n--gia~~~-d~~~l~v~e 253 (391)
...|.++-..+|.+.++.+- +-++..||+-..+....+.-...+| .+-|-| -++.+.++.
T Consensus 51 GCVN~LeWn~dG~lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 36788999999998887643 4589999987665554443333333 333433 344577877
Q ss_pred CCCCeEEEEEecc
Q 016318 254 GSVGRLHKYWLIG 266 (391)
Q Consensus 254 t~~~~I~~~~~~g 266 (391)
.....|+.|+++.
T Consensus 114 AgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 114 AGDKLIKLFDLDS 126 (758)
T ss_pred cCcceEEEEeccc
Confidence 7778899998874
No 396
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=31.22 E-value=1.3e+02 Score=28.53 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred cceEEEccCCCEEEEEeCCCCeEEEEEecccc----Cccceee-----cccCCCC------CceEeCCCCCEEEEEcCC
Q 016318 237 PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEK----AGNLEAF-----AILPGYP------DNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 237 ~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~----~g~~~~~-----~~~~g~p------~~i~~d~~G~lwva~~~~ 300 (391)
+.+++..+|++ +||++.....|.|+...... .+....| .++|+.+ .+++. .+|.+|+....+
T Consensus 2 ~Sa~~~~~d~~-l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSHS 78 (330)
T PF12275_consen 2 PSAAVQLPDGR-LWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSHS 78 (330)
T ss_pred CccceEcCCCe-EEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccCc
Confidence 34566777887 88888877777776654332 1111222 1234322 24666 678899876543
No 397
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.76 E-value=4.7e+02 Score=24.80 Aligned_cols=107 Identities=16% Similarity=0.246 Sum_probs=60.9
Q ss_pred EEecCCCc-EEEEECCCC-eEEEeCCCCeeEEceeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCC
Q 016318 137 RFDKKTGD-LYIADAYFG-LMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAED 213 (391)
Q Consensus 137 ~~d~~~g~-L~V~d~~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~ 213 (391)
.+|...++ +.++..+.| |..+|+..++......... ...|.|-..|+. ++.++.+.
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG----~sINeik~~p~~~qlvls~Sk----------------- 156 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG----GSINEIKFHPDRPQLVLSASK----------------- 156 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccC----ccchhhhcCCCCCcEEEEecC-----------------
Confidence 44443345 444444567 7778988776654333222 246788887764 67777654
Q ss_pred CceEEEEeCCCCeEEEeccCCC----CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 016318 214 TGRVLKYDPTTKQTTVLLRNLQ----FPNGLSLSKDKSFFVFCEGSVGRLHKYWLI 265 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~~----~~ngia~~~d~~~l~v~et~~~~I~~~~~~ 265 (391)
+..|-.+|..+.....+..+.. ..-.|.++.|++++.=+ .....|..+.+.
T Consensus 157 D~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc-GmDhslk~W~l~ 211 (385)
T KOG1034|consen 157 DHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC-GMDHSLKLWRLN 211 (385)
T ss_pred CceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeecc-CCcceEEEEecC
Confidence 3455566766666655554432 33468888999854322 233444444443
No 398
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=30.48 E-value=6e+02 Score=25.89 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=64.3
Q ss_pred eEEEeCCCCeeEEcee-ccCCCcccCCcceeecC-CCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEec
Q 016318 154 LMKVGPEGGLATSLAT-EAEGVPLRFTNDLDIDD-EGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 231 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~-~~~~~~~~~~~~l~~d~-~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~ 231 (391)
|++|+.++++++.... ..+|. ..|..+.|. +|.+-++++...+- .--+....+.|+.+|.+=+.+-.+
T Consensus 250 I~kf~~~~~~~~y~~sg~V~G~---llnqFsmdE~~G~LRvaTT~~~~~------~~~~~~s~N~lyVLD~~L~~vG~l- 319 (521)
T PF09826_consen 250 IYKFALDGGKIEYVGSGSVPGY---LLNQFSMDEYDGYLRVATTSGNWW------WDSEDTSSNNLYVLDEDLKIVGSL- 319 (521)
T ss_pred EEEEEccCCcEEEEEEEEECcE---EcccccEeccCCEEEEEEecCccc------ccCCCCceEEEEEECCCCcEeEEc-
Confidence 7888888777776543 23333 467778887 67887776543210 001123346788888432222222
Q ss_pred cCCC---CcceEEEccCCCEEEEEe-CCCCeEEEEEeccccCccceeec--ccCCCCCceEe
Q 016318 232 RNLQ---FPNGLSLSKDKSFFVFCE-GSVGRLHKYWLIGEKAGNLEAFA--ILPGYPDNVRT 287 (391)
Q Consensus 232 ~~~~---~~ngia~~~d~~~l~v~e-t~~~~I~~~~~~g~~~g~~~~~~--~~~g~p~~i~~ 287 (391)
+++. .-.++.|- |+..|+.. ....-++.++++.++. .++.. ..||+.+=+..
T Consensus 320 ~~la~gE~IysvRF~--Gd~~Y~VTFrqvDPLfviDLsdP~~--P~vlGeLKIPGfS~YLHP 377 (521)
T PF09826_consen 320 EGLAPGERIYSVRFM--GDRAYLVTFRQVDPLFVIDLSDPAN--PKVLGELKIPGFSDYLHP 377 (521)
T ss_pred cccCCCceEEEEEEe--CCeEEEEEEeecCceEEEECCCCCC--CceeeEEECccchhceeE
Confidence 3332 22344443 33344441 2235688888887644 33333 46787655554
No 399
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.09 E-value=2e+02 Score=30.17 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCe-EEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCCceEeCCCCC
Q 016318 214 TGRVLKYDPTTKQ-TTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGE 292 (391)
Q Consensus 214 ~g~l~~~d~~~~~-~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~ 292 (391)
+|.|-.||.+..+ ++.+......+..++++|-+.+. +......=++.| ++.++|....|...++..+-+++.++|.
T Consensus 91 sgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~--a~gStdtd~~iw-D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF--ASGSTDTDLKIW-DIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred CCceeeeehhhhhhhhhhhccccCcceeeeccceEEe--ccccccccceeh-hhhccCceeeecCCcceeEEEeecCCCc
Confidence 5677778876443 45555555667778888888643 222222223332 2223454445543344456678888885
Q ss_pred EEEEEcCC
Q 016318 293 FWVAIHCR 300 (391)
Q Consensus 293 lwva~~~~ 300 (391)
|++..+.
T Consensus 168 -~v~~g~e 174 (825)
T KOG0267|consen 168 -WVASGGE 174 (825)
T ss_pred -eeeccCC
Confidence 5554443
No 400
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.65 E-value=4.9e+02 Score=24.68 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=55.7
Q ss_pred ceEEEEeCCCCeEEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC---ceEeCCC
Q 016318 215 GRVLKYDPTTKQTTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD---NVRTNEK 290 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~---~i~~d~~ 290 (391)
|-+..+|+.+++.... .......|.|-+.|+.--+.++.+....|..+++... -..-+|....|.-+ ++.++.+
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEcCC
Confidence 5567788887766443 3334567778888887557777677777777766542 23445554545433 3566788
Q ss_pred CCEEEEEcCCCchhhhhh
Q 016318 291 GEFWVAIHCRRSLYSHLM 308 (391)
Q Consensus 291 G~lwva~~~~~~~~~~~l 308 (391)
|...++..-..+.++|.|
T Consensus 193 gd~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRL 210 (385)
T ss_pred CCeeeccCCcceEEEEec
Confidence 875555444555544433
No 401
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=28.84 E-value=5.1e+02 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=24.8
Q ss_pred ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeC
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEG 254 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et 254 (391)
-|+-.+...|.+.-.+...-....|+++++||++.-+++.
T Consensus 114 lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 114 LRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred eEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 3565665555554333322223469999999998777754
No 402
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=28.53 E-value=1.3e+02 Score=17.77 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.6
Q ss_pred ceEEEccCCCEEEEEeCC
Q 016318 238 NGLSLSKDKSFFVFCEGS 255 (391)
Q Consensus 238 ngia~~~d~~~l~v~et~ 255 (391)
...+++|||+.|+++...
T Consensus 12 ~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEE-TTSSEEEEEEEC
T ss_pred cCEEEecCCCEEEEEecC
Confidence 357899999988877543
No 403
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.40 E-value=2.1e+02 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCeEEEeCCCCeeE
Q 016318 142 TGDLYIADAYFGLMKVGPEGGLAT 165 (391)
Q Consensus 142 ~g~L~V~d~~~gl~~~d~~~g~~~ 165 (391)
++.||||...+.++.+|.+||+.+
T Consensus 214 gdtlYvcTphn~v~ALDa~TGkek 237 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKEK 237 (773)
T ss_pred CCEEEEecCcceeEEeeccCCcee
Confidence 689999999888999999998644
No 404
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=28.08 E-value=7.1e+02 Score=25.99 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=44.6
Q ss_pred cchhccccceeccccccCcceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCc
Q 016318 53 DKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGR 132 (391)
Q Consensus 53 ~~~~l~~~~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 132 (391)
...+|..-|....++-.--|.+-+.+.-+.|.+....|.++.+|...-++...... ....
T Consensus 113 ~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~--------------------h~d~ 172 (1012)
T KOG1445|consen 113 HSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSG--------------------HTDK 172 (1012)
T ss_pred cccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccC--------------------Cchh
Confidence 33445444444433333456666665433355555667788887762222211110 0112
Q ss_pred cceEEEecCCCcEEEE-ECCCCeEEEeCCCC
Q 016318 133 PLGLRFDKKTGDLYIA-DAYFGLMKVGPEGG 162 (391)
Q Consensus 133 P~gi~~d~~~g~L~V~-d~~~gl~~~d~~~g 162 (391)
...+.++. +|.|... +-.+.|..|||...
T Consensus 173 vQSa~Wse-DG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 173 VQSADWSE-DGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred hhcccccc-CCceEeeecCCcceEEeCCccC
Confidence 23445555 5665544 33456889998753
No 405
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=27.98 E-value=1e+02 Score=30.46 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.6
Q ss_pred CcccCCcceeecCCCCEEEEeCC
Q 016318 174 VPLRFTNDLDIDDEGNVYFTDSS 196 (391)
Q Consensus 174 ~~~~~~~~l~~d~~G~ly~td~~ 196 (391)
..+..|.++.+|+||..|++|-.
T Consensus 464 ~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CceecCCcceecCCCcEEeeccc
Confidence 35678999999999999999843
No 406
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=27.79 E-value=1.8e+02 Score=27.59 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=26.6
Q ss_pred eEEEeCCC-CeeE-EceeccCCCcccCCcceeecCCC---CEEEEeCCCcccchhheeeecccCCCceEEEEeCCC
Q 016318 154 LMKVGPEG-GLAT-SLATEAEGVPLRFTNDLDIDDEG---NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTT 224 (391)
Q Consensus 154 l~~~d~~~-g~~~-~~~~~~~~~~~~~~~~l~~d~~G---~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~ 224 (391)
|+.+|.++ |..- .+.......-+..|.-+..+.|| .+|+.|.. |.|+|+|..+
T Consensus 183 lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~------------------GnlwR~dl~~ 240 (335)
T PF05567_consen 183 LYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG------------------GNLWRFDLSS 240 (335)
T ss_dssp EEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT------------------SEEEEEE--T
T ss_pred EEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC------------------CcEEEEECCC
Confidence 89999998 6533 23211111112233333344555 58888853 8999999754
No 407
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=27.73 E-value=5.1e+02 Score=24.26 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCcEEEEECC--CCeEEEeCC--CCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318 142 TGDLYIADAY--FGLMKVGPE--GGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV 217 (391)
Q Consensus 142 ~g~L~V~d~~--~gl~~~d~~--~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l 217 (391)
+++|||+... ..++++|++ +.+.+.+... ...+ + ....++.-++.||+......... +. .......+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~-p~~~-R-~~~~~~~~~~~iYv~GG~~~~~~-~~-----~~~~~~~v 87 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADF-PGGP-R-NQAVAAAIDGKLYVFGGIGKANS-EG-----SPQVFDDV 87 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCC-CCCC-c-ccceEEEECCEEEEEeCCCCCCC-CC-----cceecccE
Confidence 6789996433 347888863 3444444321 1101 1 11122233678999863210000 00 00012468
Q ss_pred EEEeCCCCeEEEeccCCCCcc-eE-EE-ccCCCEEEEE
Q 016318 218 LKYDPTTKQTTVLLRNLQFPN-GL-SL-SKDKSFFVFC 252 (391)
Q Consensus 218 ~~~d~~~~~~~~~~~~~~~~n-gi-a~-~~d~~~l~v~ 252 (391)
++||+.+.+.+.+......+. +. +. .-+++ ||+.
T Consensus 88 ~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~-IYvi 124 (346)
T TIGR03547 88 YRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQ-AYFT 124 (346)
T ss_pred EEEECCCCEEecCCCCCCCcccceeEEEEeCCE-EEEE
Confidence 999999988877653222221 22 12 23555 8876
No 408
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=27.62 E-value=5.9e+02 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=23.2
Q ss_pred CccceEEEecCCCcEEEEECCCCeEEEeCCCCe
Q 016318 131 GRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGL 163 (391)
Q Consensus 131 g~P~gi~~d~~~g~L~V~d~~~gl~~~d~~~g~ 163 (391)
+++.+|.+.. +.+|.|.....-+..+|..+..
T Consensus 81 ~~iv~~~wt~-~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 81 GRIVGMGWTD-DEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCEEEEEECC-CCeEEEEEcCCEEEEEeCCCce
Confidence 7888999987 6777776644447778887544
No 409
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.44 E-value=8.2e+02 Score=26.48 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.0
Q ss_pred cCcceEEEccCCCeeEEEecCCEEEEEeCC
Q 016318 69 QGPESMAFDPLGRGPYTGVADGRILFWDGL 98 (391)
Q Consensus 69 ~gPe~i~~d~~G~~ly~~~~~g~I~~~~~~ 98 (391)
.|+---++++.+..+++|+.+|+|+.++..
T Consensus 24 ~G~~isc~~s~~~~vvigt~~G~V~~Ln~s 53 (933)
T KOG2114|consen 24 VGNAISCCSSSTGSVVIGTADGRVVILNSS 53 (933)
T ss_pred CCCceeEEcCCCceEEEeeccccEEEeccc
Confidence 344233567777779999999999999876
No 410
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=27.22 E-value=5.5e+02 Score=24.47 Aligned_cols=103 Identities=15% Similarity=0.268 Sum_probs=61.8
Q ss_pred CeEEEe-CCCCeeEEceeccCCC-cccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEe
Q 016318 153 GLMKVG-PEGGLATSLATEAEGV-PLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVL 230 (391)
Q Consensus 153 gl~~~d-~~~g~~~~~~~~~~~~-~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~ 230 (391)
+|++++ .+-|.+..+.-...|. -..++..|..-.+|++|+++-+.. ...--.++.|..-+.+.+++
T Consensus 157 HLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~------------~~SPLKiY~w~tPts~PevI 224 (442)
T PF15416_consen 157 HLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG------------KASPLKIYYWETPTSAPEVI 224 (442)
T ss_pred eeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC------------CCCceEEEEecCCCCCceEE
Confidence 355553 3445555443222221 235888898888999999973310 00112688888777776665
Q ss_pred ccC----C-----C--CcceEEEccCCC-EEEEEeCCCCeEEEEEeccc
Q 016318 231 LRN----L-----Q--FPNGLSLSKDKS-FFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 231 ~~~----~-----~--~~ngia~~~d~~-~l~v~et~~~~I~~~~~~g~ 267 (391)
.+- . + ..-.+.++.+|+ ++++.|.....|.|+.+++-
T Consensus 225 a~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~ 273 (442)
T PF15416_consen 225 ADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNY 273 (442)
T ss_pred EeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCc
Confidence 421 1 1 122566777665 57788777789999998864
No 411
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=26.76 E-value=4.7e+02 Score=25.71 Aligned_cols=99 Identities=10% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeE---
Q 016318 151 YFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQT--- 227 (391)
Q Consensus 151 ~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--- 227 (391)
++.|+.||.++=+...+...-.+...+.-..+.+.|+|.|++=...++ ...--++..+....-++..++.++.-
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK---~~~kK~~dKG~~hsDmf~L~p~~~~~dKw 282 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSK---QRVKKDVDKGTRHSDMFLLKPEDGREDKW 282 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhH---hhhhhhhhcCceeeeeeeecCCcCCCcce
Confidence 356889998876666554322233344556788899998887652222 11111222233334466777766422
Q ss_pred --EEecc-CC----CCcceEEEccCCCEEEEE
Q 016318 228 --TVLLR-NL----QFPNGLSLSKDKSFFVFC 252 (391)
Q Consensus 228 --~~~~~-~~----~~~ngia~~~d~~~l~v~ 252 (391)
..+.. +. ..--++++.++++.+++.
T Consensus 283 ~W~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 283 VWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred eEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 11111 11 112367888887777664
No 412
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.06 E-value=9.6e+02 Score=26.87 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC-eEEE
Q 016318 79 LGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG-LMKV 157 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g-l~~~ 157 (391)
.|. ++++..-.-|..||...-..+++..-. +..-+..+.-+-..|+++++....| |-.+
T Consensus 1177 ~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~-------------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1177 SGH-LLVTGDVRSIRIWDAHKEQVVADIPYG-------------------SSTLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred CCe-EEecCCeeEEEEEecccceeEeecccC-------------------CCccceeecccccCCceEEEeecCCceEEe
Q ss_pred eCCCCeeEEce---eccCCCcccCCcceeecCCCCE-EEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccC
Q 016318 158 GPEGGLATSLA---TEAEGVPLRFTNDLDIDDEGNV-YFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRN 233 (391)
Q Consensus 158 d~~~g~~~~~~---~~~~~~~~~~~~~l~~d~~G~l-y~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~ 233 (391)
|.......... ++....+. ..++.+-+.|.- .|+.+. +|.|..+|......+.+.+.
T Consensus 1237 D~R~a~~ds~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~-----------------~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1237 DRRMAPPDSLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQ-----------------DGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred ecccCCccccceeecccCCccc--ceeEEeecCCCcceeeecc-----------------CCeEEEEecccCccccccee
Q ss_pred CC----C--cceEEEccCCCEEEEEeCCCCeEEEEEeccccCccce
Q 016318 234 LQ----F--PNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLE 273 (391)
Q Consensus 234 ~~----~--~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~ 273 (391)
.. . -..+.++++.. ++.+.+. ..|..|+++|...+..+
T Consensus 1298 v~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
No 413
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=25.83 E-value=6.6e+02 Score=24.88 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=32.2
Q ss_pred CeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCC-CceEEEEeCCCCeEE
Q 016318 153 GLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAED-TGRVLKYDPTTKQTT 228 (391)
Q Consensus 153 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~~~~~~ 228 (391)
.+..+|..+++++.+........-...+.. ...+|.+|+.-... .+ ...|+++||.+++.+
T Consensus 368 ~laI~d~~~kt~t~V~glP~~~is~~~~~~-~ve~G~aYi~Vtt~--------------~g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 368 KLAIFDVSNKTFTWVTGLPADLISGFGNAP-YVENGKAYIPVTTE--------------DGSDPYIYKIDPATATAT 429 (435)
T ss_pred eEEEEEccCceeEEeccCChhhccccccce-EeeCCEEEEEEeec--------------CCCceeEEEEcCcccccc
Confidence 366667776665554211111001122332 33578889886321 11 236999999887654
No 414
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.61 E-value=2e+02 Score=29.99 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCeEEEeccCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecc--c--CCCCCceEe
Q 016318 214 TGRVLKYDPTTKQTTVLLRNL--QFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAI--L--PGYPDNVRT 287 (391)
Q Consensus 214 ~g~l~~~d~~~~~~~~~~~~~--~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~--~--~g~p~~i~~ 287 (391)
.|.|+.|+..+++.+...... .......++++.. +.++.+.+++|..+-+.-........+.. . +.....++.
T Consensus 54 ~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~W 132 (726)
T KOG3621|consen 54 AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEW 132 (726)
T ss_pred cceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEe
Confidence 477888888777765554322 1222345777776 55666777888888654322222222221 1 112234556
Q ss_pred CCCCC-EEEEEcCC
Q 016318 288 NEKGE-FWVAIHCR 300 (391)
Q Consensus 288 d~~G~-lwva~~~~ 300 (391)
+++|. +|.+...+
T Consensus 133 s~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 133 SKNGMKLYSGDSQG 146 (726)
T ss_pred cccccEEeecCCCc
Confidence 77775 77765544
No 415
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=24.89 E-value=3.5e+02 Score=21.32 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCeEEEeccCCCCc-ceEEEccCCCEEEEEeCCC
Q 016318 178 FTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFP-NGLSLSKDKSFFVFCEGSV 256 (391)
Q Consensus 178 ~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-ngia~~~d~~~l~v~et~~ 256 (391)
.|.-|-.+++|+.+.+..+. ...-.++.||..-+++..-. + ..| .-+..+.....-|..+..+
T Consensus 5 sPSYvy~~sng~~~ass~g~--------------~~g~nvFyYDsti~RI~TCc-~-vrP~Y~v~~~D~~~~sf~I~kn~ 68 (123)
T PF11763_consen 5 SPSYVYLNSNGYMIASSNGD--------------PEGENVFYYDSTIKRIVTCC-C-VRPIYRVYHDDPNKSSFNIIKNN 68 (123)
T ss_pred ccceEEEcCCCcEEeeccCC--------------cCceeeEEecCCcceEEEec-c-cccEEEEeecCCCcceEEEEecC
Confidence 46667788888887776431 01125888997655543321 1 122 1222221111122223333
Q ss_pred CeEEEEEeccccCccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318 257 GRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 257 ~~I~~~~~~g~~~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
+..+++.. ...--+.|-.+.++.+|++|+....
T Consensus 69 dG~~~Ft~----------~e~~~~ep~~l~~l~dgri~~ts~~ 101 (123)
T PF11763_consen 69 DGTYQFTF----------VESSFSEPLDLHTLSDGRIWFTSNE 101 (123)
T ss_pred CCcEEEEE----------cccCCCCcEEEEEecCCcEEEEccc
Confidence 34433321 1111245777889999999998643
No 416
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=6.6e+02 Score=24.51 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.7
Q ss_pred ccccCcceEEEccCCCeeEEEecCCEEEEE
Q 016318 66 NQIQGPESMAFDPLGRGPYTGVADGRILFW 95 (391)
Q Consensus 66 ~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~ 95 (391)
..+.|=++|..+++|+.+|+-+.+|+--|.
T Consensus 66 ~p~~G~Sgi~~d~~~~~f~~lSDng~g~K~ 95 (391)
T COG4222 66 QPVGGFSGITYDPQGDGYWALSDNGRGSKL 95 (391)
T ss_pred CCCCceeeeEEccCCCeEEEEeCCCccccc
Confidence 346677888899888778887777654444
No 417
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=24.50 E-value=5.5e+02 Score=24.45 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=39.5
Q ss_pred eEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeecccCCCCC---ceEeCCCCC
Q 016318 216 RVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPD---NVRTNEKGE 292 (391)
Q Consensus 216 ~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~~~~g~p~---~i~~d~~G~ 292 (391)
|++.-|..|-++..+...+....-|....|..+++.+-..+..|....+.. .+-.......++ .++-+++|+
T Consensus 30 rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-----pew~ckIdeg~agls~~~WSPdgr 104 (447)
T KOG4497|consen 30 RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-----PEWYCKIDEGQAGLSSISWSPDGR 104 (447)
T ss_pred EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-----ceeEEEeccCCCcceeeeECCCcc
Confidence 677777666555444333333444666667766665545555666666543 343333222233 356688886
No 418
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.07 E-value=63 Score=23.78 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=8.9
Q ss_pred CCccchHHHHHHHHH
Q 016318 1 MTPRGFLGLVILLLA 15 (391)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (391)
||+++++.+++++++
T Consensus 1 MKK~kii~iii~li~ 15 (85)
T PF11337_consen 1 MKKKKIILIIIILIV 15 (85)
T ss_pred CCchHHHHHHHHHHH
Confidence 888656665553333
No 419
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=23.94 E-value=9e+02 Score=27.39 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=23.7
Q ss_pred ceeccccccCcceEEEccCCCeeEEEecCCEEEEEeC
Q 016318 61 EIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDG 97 (391)
Q Consensus 61 ~~~~~~~~~gPe~i~~d~~G~~ly~~~~~g~I~~~~~ 97 (391)
+.++.-+..||-+.+.+-+|. +.++. +.+|+.++-
T Consensus 1089 Kel~~eE~KGtVsavceV~G~-l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1089 KELYIEEQKGTVSAVCEVRGH-LLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred eeeehhhcccceEEEEEeccE-EEEcc-CcEEEEEEe
Confidence 445566788999988888897 55544 446666644
No 420
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=2.6e+02 Score=30.69 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCceEEEEeCCCCeEEE-eccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccc
Q 016318 213 DTGRVLKYDPTTKQTTV-LLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGE 267 (391)
Q Consensus 213 ~~g~l~~~d~~~~~~~~-~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~ 267 (391)
.+++++++|++|+++-- +-....--..+.+.|..-.++-+....++|-.|.+.|.
T Consensus 274 kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 47899999999876522 11111222346666665545555566778888877653
No 421
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.73 E-value=1.1e+03 Score=26.18 Aligned_cols=232 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred eEEEccCCCeeEEEecCCEE-EEEeCC------ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcE
Q 016318 73 SMAFDPLGRGPYTGVADGRI-LFWDGL------KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDL 145 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L 145 (391)
..++|...+.+|+......+ ..++-+ ....++..... .....++...++.+-.+.+.|
T Consensus 26 ~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~---------------~~~~~~~~ivs~~yl~d~~~l 90 (928)
T PF04762_consen 26 ATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAP---------------LPDDPNDKIVSFQYLADSESL 90 (928)
T ss_pred eEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEecccc---------------CCcCCCCcEEEEEeccCCCcE
Q ss_pred EEEECCCCeEEE----eCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEe
Q 016318 146 YIADAYFGLMKV----GPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYD 221 (391)
Q Consensus 146 ~V~d~~~gl~~~----d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d 221 (391)
+++.+.+.|+.+ ++.+..++.+.....| ...++-.||+.+.+..++ .+.|+..+
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~G-----I~a~~WSPD~Ella~vT~-----------------~~~l~~mt 148 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPDEDEIEIVGSVDSG-----ILAASWSPDEELLALVTG-----------------EGNLLLMT 148 (928)
T ss_pred EEEECCceEEEEEccCCCCCceeEEEEEEcCc-----EEEEEECCCcCEEEEEeC-----------------CCEEEEEe
Q ss_pred CCCCeEEEec---cCCC---------------------------------------------CcceEEEccCCCEEEEEe
Q 016318 222 PTTKQTTVLL---RNLQ---------------------------------------------FPNGLSLSKDKSFFVFCE 253 (391)
Q Consensus 222 ~~~~~~~~~~---~~~~---------------------------------------------~~ngia~~~d~~~l~v~e 253 (391)
.+=--+.... +.+. ..--|++-.||+++-|+.
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Q ss_pred C--CCC--eEEEEEeccccCccceeecc-cCCCCCceEeCCCCCEEEEEcCCCchhhhhhhcCccceeeeeecCccceee
Q 016318 254 G--SVG--RLHKYWLIGEKAGNLEAFAI-LPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFLLKLPISAKTH 328 (391)
Q Consensus 254 t--~~~--~I~~~~~~g~~~g~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 328 (391)
- ..+ |..|++ ++.|......+ .+|+...++--|.|++..+.........-..-+.+.+|+--+.++....
T Consensus 229 ~~~~~~~~R~iRVy---~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~-- 303 (928)
T PF04762_consen 229 VEPETGSRRVIRVY---SREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPE-- 303 (928)
T ss_pred EEcCCCceeEEEEE---CCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCC--
Q ss_pred eEEeecCccceEEEEECCCCCEEEE
Q 016318 329 YLIHVGGRLHAMAVKYSPEGKILQV 353 (391)
Q Consensus 329 ~~~~~~~~~~~~v~~~d~~g~~~~~ 353 (391)
.....-+..+.+++++.+
T Consensus 304 -------~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 304 -------EEKVIELAWNSDSEILAV 321 (928)
T ss_pred -------CceeeEEEECCCCCEEEE
No 422
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.11 E-value=7e+02 Score=23.85 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCcEEEEECC--CCeEEEeCCC--CeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceE
Q 016318 142 TGDLYIADAY--FGLMKVGPEG--GLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRV 217 (391)
Q Consensus 142 ~g~L~V~d~~--~gl~~~d~~~--g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l 217 (391)
++.|||+... ..++++|.+. ++.+.+... ...+ +. ...++.-++.||+......- .... .......+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~-p~~~-r~-~~~~v~~~~~IYV~GG~~~~-~~~~-----~~~~~~~v 108 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAF-PGGP-RE-QAVAAFIDGKLYVFGGIGKT-NSEG-----SPQVFDDV 108 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcC-CCCC-cc-cceEEEECCEEEEEcCCCCC-CCCC-----ceeEcccE
Confidence 5789986443 3377888753 344444321 1111 11 11223336789997532100 0000 00012468
Q ss_pred EEEeCCCCeEEEeccCCCCc-ce-EEEc-cCCCEEEEEe
Q 016318 218 LKYDPTTKQTTVLLRNLQFP-NG-LSLS-KDKSFFVFCE 253 (391)
Q Consensus 218 ~~~d~~~~~~~~~~~~~~~~-ng-ia~~-~d~~~l~v~e 253 (391)
++||+.+++.+.+......+ .+ .+.. -+++ ||+.-
T Consensus 109 ~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~-IYv~G 146 (376)
T PRK14131 109 YKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGK-AYITG 146 (376)
T ss_pred EEEeCCCCEEEeCCCCCCCcccceEEEEeeCCE-EEEEC
Confidence 99999998887765322222 12 2222 3554 88763
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=22.09 E-value=5.8e+02 Score=22.92 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=72.6
Q ss_pred ccceEEEecCCCcE-EEE--ECCCCeEEEeCCCCeeEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeee
Q 016318 132 RPLGLRFDKKTGDL-YIA--DAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLV 208 (391)
Q Consensus 132 ~P~gi~~d~~~g~L-~V~--d~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~ 208 (391)
.+...++++++..+ +|. +....|+.....+. ...+. .+. ....-.++++|.+|+.+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~---~g~---~l~~PS~d~~g~~W~v~~~~----------- 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL---TGG---SLTRPSWDPDGWVWTVDDGS----------- 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec---cCC---ccccccccCCCCEEEEEcCC-----------
Confidence 35556777633333 333 12233666655443 23221 122 22233678899999997541
Q ss_pred cccCCCceEEEEeCCCCeEEEe---ccCCC-CcceEEEccCCCEEEEEeC--CCCeEEEEEeccccCccceeecc----c
Q 016318 209 FSAEDTGRVLKYDPTTKQTTVL---LRNLQ-FPNGLSLSKDKSFFVFCEG--SVGRLHKYWLIGEKAGNLEAFAI----L 278 (391)
Q Consensus 209 ~~~~~~g~l~~~d~~~~~~~~~---~~~~~-~~ngia~~~d~~~l~v~et--~~~~I~~~~~~g~~~g~~~~~~~----~ 278 (391)
...++.+ +..+++.... ..... ....+.++|||..+.+.-. .+.+|+...+..+..+....+.. .
T Consensus 87 ----~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 87 ----GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred ----CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 1112232 3233332221 12222 4567899999998766642 24677777655333331111111 1
Q ss_pred ---CCCCCceEeCCCCCEEEEEcCC
Q 016318 279 ---PGYPDNVRTNEKGEFWVAIHCR 300 (391)
Q Consensus 279 ---~g~p~~i~~d~~G~lwva~~~~ 300 (391)
..-...+.-..++.|.|.....
T Consensus 162 ~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccccCcceeeeecCCCEEEEEeCCC
Confidence 1123456667778877776543
No 424
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=21.73 E-value=5.8e+02 Score=22.78 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=26.5
Q ss_pred CCEEEEEeCCCCeEEEEEeccccCccc-eeec--ccCCCCCceEeCCCCCEEEEEcC
Q 016318 246 KSFFVFCEGSVGRLHKYWLIGEKAGNL-EAFA--ILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 246 ~~~l~v~et~~~~I~~~~~~g~~~g~~-~~~~--~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
...+.++- +.+|..|....+. ... ..+. .+|..|..|+.. +..+.++...
T Consensus 105 ~~~L~va~--kk~i~i~~~~~~~-~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~ 157 (275)
T PF00780_consen 105 SRRLCVAV--KKKILIYEWNDPR-NSFSKLLKEISLPDPPSSIAFL-GNKICVGTSK 157 (275)
T ss_pred ceEEEEEE--CCEEEEEEEECCc-ccccceeEEEEcCCCcEEEEEe-CCEEEEEeCC
Confidence 34455553 3477777665531 222 2222 356677777776 3446666533
No 425
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=21.38 E-value=7.1e+02 Score=24.66 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=36.5
Q ss_pred ceEEEEeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCE
Q 016318 215 GRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEF 293 (391)
Q Consensus 215 g~l~~~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~l 293 (391)
+.++..++.-.....+.......--+++ .++.|.+.+. +.|+.|++.. .+.+++. ++.|.+-.-+. -+|.+
T Consensus 120 ~KvYvi~~~pp~~~~i~~~i~ecg~l~l--~~nvL~i~~~--~git~yn~~e---~~k~vw~~~fnGsyvdaRl-ynG~l 191 (603)
T COG4880 120 GKVYVIDKNPPLLETIDCPIPECGILAL--GGNVLAIGEV--GGITLYNLYE---SSKKVWVYNFNGSYVDARL-YNGEL 191 (603)
T ss_pred CeEEEEcCCCchhhhcccCCccceEEEE--cCcEEEEEEe--CCEEEEEecc---ccceeEEEecCCceeeeee-eCCEE
Confidence 5666666543333333333222222333 2444556554 3566665431 2223333 45555433333 47888
Q ss_pred EEEEc
Q 016318 294 WVAIH 298 (391)
Q Consensus 294 wva~~ 298 (391)
|++..
T Consensus 192 Yiv~r 196 (603)
T COG4880 192 YIVAR 196 (603)
T ss_pred EEEEc
Confidence 88765
No 426
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=21.20 E-value=4.2e+02 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.8
Q ss_pred ccCCcceeecCCCCEEEEe
Q 016318 176 LRFTNDLDIDDEGNVYFTD 194 (391)
Q Consensus 176 ~~~~~~l~~d~~G~ly~td 194 (391)
...|-.+-+..+|++||+.
T Consensus 81 ~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 81 FSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred CCCcEEEEEecCCcEEEEc
Confidence 3467788889999999997
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.15 E-value=5.3e+02 Score=25.75 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEccCCCeeEEEecCCEEEEEeCC----ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCC------
Q 016318 74 MAFDPLGRGPYTGVADGRILFWDGL----KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTG------ 143 (391)
Q Consensus 74 i~~d~~G~~ly~~~~~g~I~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g------ 143 (391)
+..+|||+.+|+-+. ..+..++-+ +.+.+...+ .|
T Consensus 226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds----------------------------------pg~~~~~V 270 (733)
T COG4590 226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS----------------------------------PGDSRHQV 270 (733)
T ss_pred hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcC----------------------------------CCchHHHH
Q ss_pred --cEEEEECCCCeEEEeCCCCeeEEc-eeccCCCcccCCcceeecCCC-CEEEEeCCCcccchhheeeecccCCCceEEE
Q 016318 144 --DLYIADAYFGLMKVGPEGGLATSL-ATEAEGVPLRFTNDLDIDDEG-NVYFTDSSTNYQRRNFMQLVFSAEDTGRVLK 219 (391)
Q Consensus 144 --~L~V~d~~~gl~~~d~~~g~~~~~-~~~~~~~~~~~~~~l~~d~~G-~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~ 219 (391)
.+|.-..+..++..++++...+-+ ....++..++...+...++.. .+...+.. ........++|.+-.
T Consensus 271 te~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~--------rkgF~~l~~~G~L~~ 342 (733)
T COG4590 271 TEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETN--------RKGFYSLYRNGTLQS 342 (733)
T ss_pred HHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccc--------cceEEEEcCCCceee
Q ss_pred EeCCCCeEEEeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 220 YDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 220 ~d~~~~~~~~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
+.....+.-....-...+.-+++||.++++.+-+.++-++.+.+
T Consensus 343 f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~ 386 (733)
T COG4590 343 FYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLE 386 (733)
T ss_pred eecccCcceehhhhhcCcceeeeCcccchheeecCCceEEEEec
No 428
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=6.3e+02 Score=25.86 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCcceEEEccCCCEEEEEeCC--CCeEEEEEecccc---CccceeecccCCCCCceEeCCCCCEEEEEcC
Q 016318 235 QFPNGLSLSKDKSFFVFCEGS--VGRLHKYWLIGEK---AGNLEAFAILPGYPDNVRTNEKGEFWVAIHC 299 (391)
Q Consensus 235 ~~~ngia~~~d~~~l~v~et~--~~~I~~~~~~g~~---~g~~~~~~~~~g~p~~i~~d~~G~lwva~~~ 299 (391)
.+.|.+.++|.|+++.++.-. ++.+.-|+.+-.. .+..+.+ .-..+.-|+.|++.++..+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-----~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-----AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-----ccccceECCCCCEEEEeee
Confidence 588999999999999888654 4456666543200 0111111 1356888999997776544
No 429
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.74 E-value=9.7e+02 Score=24.98 Aligned_cols=148 Identities=9% Similarity=0.094 Sum_probs=79.8
Q ss_pred eEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccc-eEEEecCCCcEEEEECC
Q 016318 73 SMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPL-GLRFDKKTGDLYIADAY 151 (391)
Q Consensus 73 ~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-gi~~d~~~g~L~V~d~~ 151 (391)
+|-+.|..-.+.++.++|.+..|+-+..+.+... .. +.-|. .-.|-.+.+-+.++...
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksf-----eV----------------~~~PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-----EV----------------SEVPVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccceeeeee-----ee----------------cccchhhheeeeccceEEEecCC
Confidence 5666676666677889999999987621211111 01 22222 11233323444444434
Q ss_pred CCeEEEeCCCCe-eEEceeccCCCcccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCC--eEE
Q 016318 152 FGLMKVGPEGGL-ATSLATEAEGVPLRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTK--QTT 228 (391)
Q Consensus 152 ~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~~~ 228 (391)
..|.+++..|++ ++.+-.+ ..+.+.+++.|.-=..+|.+- +-.+-.+|.+.+ ...
T Consensus 77 ~~IrVfnynt~ekV~~FeAH-----~DyIR~iavHPt~P~vLtsSD-----------------Dm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAH-----SDYIRSIAVHPTLPYVLTSSD-----------------DMTIKLWDWENEWACEQ 134 (794)
T ss_pred ceEEEEecccceeeEEeecc-----ccceeeeeecCCCCeEEecCC-----------------ccEEEEeeccCceeeee
Confidence 558888877753 3433222 237888999987555554432 223334454433 233
Q ss_pred EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 016318 229 VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYW 263 (391)
Q Consensus 229 ~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~ 263 (391)
++...-.+.-.|++.|....-+++.+-...|.++.
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 34444457778999987655666655555554444
No 430
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=20.59 E-value=2.6e+02 Score=24.72 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=28.6
Q ss_pred eEEEeCCCCeeEEceeccCCCcccCCccee--ecCCCC-EEEEe
Q 016318 154 LMKVGPEGGLATSLATEAEGVPLRFTNDLD--IDDEGN-VYFTD 194 (391)
Q Consensus 154 l~~~d~~~g~~~~~~~~~~~~~~~~~~~l~--~d~~G~-ly~td 194 (391)
++.+||.+.+++.+.....|.+.....++. +.+.|+ +.|+-
T Consensus 41 vctvDP~~~~irlywkd~aG~py~sf~~L~~~l~~qg~~l~fAm 84 (250)
T COG3698 41 VCTVDPATDSIRLYWKDPAGEPYRSFHALLAALNKQGQSLLFAM 84 (250)
T ss_pred EEEecCcccceEEEecCCCCchhhhHHHHHHHHHhccceEEEEe
Confidence 568999999999988776677766666553 345665 55554
No 431
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.48 E-value=6.7e+02 Score=22.99 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=32.6
Q ss_pred CCCeeEEEecCCEEEEEeCC---ceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEECCCC
Q 016318 79 LGRGPYTGVADGRILFWDGL---KWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADAYFG 153 (391)
Q Consensus 79 ~G~~ly~~~~~g~I~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~~~g 153 (391)
++..+.++++|+.|--|++. .+.+|.. ......+..+++...+|+...++.|
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-----------------------h~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-----------------------HNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecC-----------------------CccEEEEEecCCCCCCeEEEccCCc
Confidence 34446677888888888776 2333210 1234566778876778887776666
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=20.22 E-value=7.6e+02 Score=25.57 Aligned_cols=81 Identities=7% Similarity=0.166 Sum_probs=51.6
Q ss_pred EEEEeCCCCeEE-EeccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEeccccCccceeec-ccCCCCCceEeCCCCCEE
Q 016318 217 VLKYDPTTKQTT-VLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFW 294 (391)
Q Consensus 217 l~~~d~~~~~~~-~~~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~~g~~~g~~~~~~-~~~g~p~~i~~d~~G~lw 294 (391)
++.|+.+-.+++ +-..++--|.=||+++..+.+-|+...-+-|..|.+.-....+.+.+. ....-|.||++-.|..+.
T Consensus 320 LVtfe~~VT~trKV~IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLL 399 (671)
T PF15390_consen 320 LVTFERKVTTTRKVSIPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLL 399 (671)
T ss_pred EEEeecceEEeeeeccccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEE
Confidence 455654322222 234566778899999999988888666678888887643333333332 222468999998777655
Q ss_pred EEE
Q 016318 295 VAI 297 (391)
Q Consensus 295 va~ 297 (391)
+-.
T Consensus 400 ilV 402 (671)
T PF15390_consen 400 ILV 402 (671)
T ss_pred EEe
Confidence 543
No 433
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=20.11 E-value=2.3e+02 Score=18.23 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.6
Q ss_pred ceEEEccCCCeeEEEecCCEEEEEeC
Q 016318 72 ESMAFDPLGRGPYTGVADGRILFWDG 97 (391)
Q Consensus 72 e~i~~d~~G~~ly~~~~~g~I~~~~~ 97 (391)
+.+...|+.+++.+++.+|.|..+.-
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEEC
Confidence 37788899999999999998887643
No 434
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=20.07 E-value=7.5e+02 Score=25.19 Aligned_cols=157 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred cceEEEccCCCeeEEEecCCEEEEEeCCceeEEEeecCCCcccCCCCCCccccccccCccCccceEEEecCCCcEEEEEC
Q 016318 71 PESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIATSYLKNEHICGRPLGLRFDKKTGDLYIADA 150 (391)
Q Consensus 71 Pe~i~~d~~G~~ly~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~gi~~d~~~g~L~V~d~ 150 (391)
-..++..+.-..+..++.||.+.-|++..... |.- ......+.|+.+.+-..+=-..+++.
T Consensus 399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-----------~~f--------~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-----------CTF--------GEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred eeeeeecccccceeeecCCceEEeeccCCcCc-----------ccc--------CCccccCCcceEeeccchhHhhhhhc
Confidence 33566665555577788888888887652222 110 01112578888877541112333433
Q ss_pred CCCeEEEeC-CCCe-eEEceeccCCCc--ccCCcceeecCCCCEEEEeCCCcccchhheeeecccCCCceEEEEeCCCCe
Q 016318 151 YFGLMKVGP-EGGL-ATSLATEAEGVP--LRFTNDLDIDDEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQ 226 (391)
Q Consensus 151 ~~gl~~~d~-~~g~-~~~~~~~~~~~~--~~~~~~l~~d~~G~ly~td~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~ 226 (391)
..+.+.++. ++++ +..+.......+ ....|-++-.+.+.+-|+.. .+..+-.+|-.+++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h-----------------ed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH-----------------EDRSIRFFDNKTGK 522 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc-----------------cCCceecccccccc
Confidence 344444332 2221 111211111111 12334444455555555542 23445555555544
Q ss_pred EEEe-ccCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 016318 227 TTVL-LRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWL 264 (391)
Q Consensus 227 ~~~~-~~~~~~~ngia~~~d~~~l~v~et~~~~I~~~~~ 264 (391)
...- ......-.++|++|+|-++ ++....+++....+
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKL 560 (577)
T ss_pred cchheeeccceecceeecCCCceE-EeecCCceeehhhc
Confidence 3211 1122345689999998743 44455555544433
Done!