Query 016319
Match_columns 391
No_of_seqs 153 out of 485
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.9 6.5E-22 1.4E-26 157.2 7.8 84 296-379 1-90 (90)
2 KOG4282 Transcription factor G 99.7 1.9E-16 4.2E-21 155.1 11.6 86 296-381 54-143 (345)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.4 1.5E-06 3.3E-11 68.3 8.2 66 295-360 1-74 (78)
4 smart00595 MADF subfamily of S 98.4 5.2E-07 1.1E-11 72.1 5.3 68 307-379 2-84 (89)
5 PF12776 Myb_DNA-bind_3: Myb/S 98.1 1E-05 2.3E-10 65.1 7.9 66 298-363 1-70 (96)
6 PF10545 MADF_DNA_bdg: Alcohol 98.0 4.5E-06 9.7E-11 64.8 3.6 68 307-377 1-83 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.7 7.7E-05 1.7E-09 54.2 4.6 47 297-355 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.4 0.00019 4.1E-09 53.8 4.2 43 299-355 1-44 (60)
9 smart00717 SANT SANT SWI3, AD 97.4 0.0003 6.4E-09 48.6 4.4 47 297-356 2-48 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.2 0.00055 1.2E-08 46.7 4.0 45 298-355 1-45 (45)
11 COG0595 mRNA degradation ribon 96.9 0.0042 9.1E-08 66.5 9.6 118 19-144 434-554 (555)
12 PLN03212 Transcription repress 96.0 0.017 3.7E-07 56.6 7.0 51 293-355 22-72 (249)
13 PLN03091 hypothetical protein; 94.4 0.063 1.4E-06 56.5 5.4 49 293-353 11-59 (459)
14 PLN03212 Transcription repress 93.4 0.21 4.6E-06 49.1 6.7 53 294-360 76-128 (249)
15 PLN03091 hypothetical protein; 93.3 0.3 6.6E-06 51.5 8.0 53 295-361 66-118 (459)
16 KOG0051 RNA polymerase I termi 89.1 0.57 1.2E-05 51.2 5.1 65 294-362 434-514 (607)
17 PF04504 DUF573: Protein of un 85.9 4 8.7E-05 34.6 7.4 65 296-363 4-70 (98)
18 KOG1279 Chromatin remodeling f 81.7 1.4 3E-05 47.4 3.6 52 292-357 249-300 (506)
19 KOG0048 Transcription factor, 79.9 1.6 3.4E-05 41.8 3.0 46 296-353 9-54 (238)
20 TIGR02894 DNA_bind_RsfA transc 79.2 5.4 0.00012 37.3 6.1 60 294-361 2-62 (161)
21 KOG0049 Transcription factor, 76.6 7.2 0.00016 43.6 7.1 54 295-360 252-305 (939)
22 COG5259 RSC8 RSC chromatin rem 75.4 4.6 9.9E-05 43.4 5.1 49 295-357 278-326 (531)
23 PRK13923 putative spore coat p 68.9 14 0.0003 34.8 6.1 60 294-361 3-63 (170)
24 COG3809 Uncharacterized protei 66.1 3.6 7.8E-05 34.7 1.5 18 84-101 27-44 (88)
25 PF03353 Lin-8: Ras-mediated v 49.6 24 0.00051 35.0 4.4 80 297-376 18-112 (313)
26 TIGR01557 myb_SHAQKYF myb-like 46.7 50 0.0011 25.6 4.9 45 295-351 2-50 (57)
27 KOG0048 Transcription factor, 46.7 50 0.0011 31.7 6.0 53 295-361 61-114 (238)
28 PF00435 Spectrin: Spectrin re 44.9 1.4E+02 0.003 22.8 7.3 62 300-362 32-93 (105)
29 KOG1986 Vesicle coat complex C 42.3 56 0.0012 37.0 6.2 63 76-139 475-546 (745)
30 PF14501 HATPase_c_5: GHKL dom 40.1 27 0.00058 28.4 2.7 46 137-182 37-82 (100)
31 PF14769 CLAMP: Flagellar C1a 37.2 2.4E+02 0.0051 23.6 7.9 65 295-359 8-81 (101)
32 COG5147 REB1 Myb superfamily p 35.0 29 0.00062 37.8 2.6 52 295-360 71-122 (512)
33 TIGR00501 met_pdase_II methion 33.2 1.2E+02 0.0027 29.9 6.5 52 77-128 90-143 (295)
34 PLN00162 transport protein sec 30.5 1E+02 0.0022 34.8 6.0 62 77-139 492-563 (761)
35 PF08994 T4_Gp59_C: T4 gene Gp 30.3 1.2E+02 0.0025 26.7 5.1 56 302-358 45-102 (103)
36 TIGR01101 V_ATP_synt_F vacuola 29.8 1.2E+02 0.0025 26.8 5.1 64 95-160 45-109 (115)
37 cd04658 Piwi_piwi-like_Euk Piw 27.5 3E+02 0.0065 28.6 8.4 87 25-143 206-303 (448)
38 cd01088 MetAP2 Methionine Amin 26.9 1.7E+02 0.0037 28.7 6.3 52 78-129 87-140 (291)
39 COG1927 Mtd Coenzyme F420-depe 26.3 1E+02 0.0023 30.6 4.6 38 117-178 47-84 (277)
40 PF07750 GcrA: GcrA cell cycle 26.1 69 0.0015 29.5 3.2 17 297-313 1-17 (162)
41 TIGR03619 F420_Rv2161c probabl 26.1 2.9E+02 0.0062 26.5 7.5 72 86-159 159-230 (246)
42 COG1761 RPB11 DNA-directed RNA 25.6 1.4E+02 0.0029 26.0 4.6 46 52-110 39-85 (99)
43 PF13453 zf-TFIIB: Transcripti 25.4 27 0.00059 24.8 0.3 16 84-99 25-40 (41)
44 cd07029 RNAP_I_III_AC19 AC19 s 25.1 1.3E+02 0.0027 25.1 4.2 48 50-109 31-78 (85)
45 KOG0397 60S ribosomal protein 25.0 1.7E+02 0.0037 27.4 5.4 84 79-171 12-108 (176)
46 KOG3432 Vacuolar H+-ATPase V1 24.8 1.2E+02 0.0025 27.3 4.2 79 88-172 40-119 (121)
47 cd01087 Prolidase Prolidase. E 24.6 1.4E+02 0.0031 27.8 5.1 55 83-137 91-151 (243)
48 cd01090 Creatinase Creatine am 24.1 1.2E+02 0.0027 28.5 4.5 36 93-128 113-148 (228)
49 KOG0049 Transcription factor, 24.0 1.3E+02 0.0029 34.2 5.3 52 294-358 358-409 (939)
50 PTZ00053 methionine aminopepti 23.2 1.3E+02 0.0028 32.5 4.9 61 76-136 248-310 (470)
51 KOG3988 Protein-tyrosine sulfo 23.1 75 0.0016 32.9 3.0 90 284-376 149-243 (378)
52 cd00176 SPEC Spectrin repeats, 22.8 4.9E+02 0.011 22.3 8.0 64 300-363 137-200 (213)
53 PF13459 Fer4_15: 4Fe-4S singl 21.7 62 0.0013 24.7 1.7 24 90-113 39-62 (65)
54 cd01091 CDC68-like Related to 21.2 2.1E+02 0.0046 27.5 5.6 69 49-129 87-159 (243)
55 PRK08671 methionine aminopepti 21.1 2.4E+02 0.0051 27.8 6.0 52 77-128 87-140 (291)
56 PRK05716 methionine aminopepti 20.7 1.5E+02 0.0033 27.6 4.5 47 82-128 106-157 (252)
57 cd01086 MetAP1 Methionine Amin 20.3 2.4E+02 0.0051 26.1 5.5 47 83-129 97-148 (238)
58 PRK10879 proline aminopeptidas 20.1 2.7E+02 0.0059 29.1 6.5 53 83-136 270-329 (438)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.86 E-value=6.5e-22 Score=157.20 Aligned_cols=84 Identities=44% Similarity=0.902 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHhhhh--cccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc--CCCCCC
Q 016319 296 RNKWRPEEVKKLIKMRGE--LHSKFQV--VKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS--GNSQKS 369 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E--~e~rF~~--~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd--G~~rks 369 (391)
+.+||++||.+||++|.+ ++..|.. ..++..+|+.||..|+++||.||+.||++||+||++.|+++++ ...+.+
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~~~ 80 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKKSGSS 80 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS----S
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 468999999999999999 5667864 5677789999999999999999999999999999999999988 233469
Q ss_pred CcChHHHHHh
Q 016319 370 WPYFEEMNKI 379 (391)
Q Consensus 370 WpYFdeMDeI 379 (391)
|+||++||+|
T Consensus 81 w~~f~~md~i 90 (90)
T PF13837_consen 81 WPYFDEMDEI 90 (90)
T ss_dssp ---TT-----
T ss_pred CcCHHHHhcC
Confidence 9999999986
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.68 E-value=1.9e-16 Score=155.12 Aligned_cols=86 Identities=31% Similarity=0.703 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc----CCCCCCCc
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS----GNSQKSWP 371 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd----G~~rksWp 371 (391)
...|+.+||++||.+|++++..|...++|.++|++||.+|.+.||.||+.||+.||+||+++||+.|. +.....|+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~ 133 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK 133 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999987 23689999
Q ss_pred ChHHHHHhhc
Q 016319 372 YFEEMNKIFS 381 (391)
Q Consensus 372 YFdeMDeILG 381 (391)
||.+||.++.
T Consensus 134 ff~~le~~~~ 143 (345)
T KOG4282|consen 134 FFSELEALLI 143 (345)
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.40 E-value=1.5e-06 Score=68.35 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhh-------cccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQV-------VKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQKYEE 360 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~-------~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk~YKK 360 (391)
|..+||.+|...||++...+..-+.+ ...+...|++|+..|...|. .||+.||+.+|.+|+..=|+
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999998885544332 23468999999999999876 89999999999999987654
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.38 E-value=5.2e-07 Score=72.06 Aligned_cols=68 Identities=24% Similarity=0.603 Sum_probs=50.7
Q ss_pred HHHHHHHHH-------HhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-----C---CCCCCCc
Q 016319 307 LIKMRGELH-------SKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS-----G---NSQKSWP 371 (391)
Q Consensus 307 LIeLw~E~e-------~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd-----G---~~rksWp 371 (391)
||+++.... ..|.........|++|+..|.. |+.+|+.||++|+..|++... + ..+..|+
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~~~w~ 76 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKKSKWE 76 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch
Confidence 677776632 2333334456799999999955 999999999999999999743 1 1258999
Q ss_pred ChHHHHHh
Q 016319 372 YFEEMNKI 379 (391)
Q Consensus 372 YFdeMDeI 379 (391)
||+.|.=+
T Consensus 77 ~~~~m~FL 84 (89)
T smart00595 77 YFDRLSFL 84 (89)
T ss_pred hhHhhhhH
Confidence 99999643
No 5
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.14 E-value=1e-05 Score=65.13 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh---hcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhhc
Q 016319 298 KWRPEEVKKLIKMRGELHSKFQ---VVKGRMALWKEISTHLANE-GFNRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 298 ~WT~eETklLIeLw~E~e~rF~---~~kRN~~VWEeIA~kL~e~-Gy~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
+||++++..||++..+....-. ...-+...|+.|+..|.+. |...|..||++||+.||+.|+.++.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999988543221 3345688999999999876 8899999999999999999999976
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.03 E-value=4.5e-06 Score=64.76 Aligned_cols=68 Identities=26% Similarity=0.602 Sum_probs=50.7
Q ss_pred HHHHHHHHH-------HhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc--------CCCCCCCc
Q 016319 307 LIKMRGELH-------SKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS--------GNSQKSWP 371 (391)
Q Consensus 307 LIeLw~E~e-------~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd--------G~~rksWp 371 (391)
||+++.... ..|.....+...|++|+..| |...++.+|+.+|++|+..|++.+. ......|.
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~~~~~ 77 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYVPTWS 77 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccH
Confidence 455555532 23333335679999999998 5567799999999999999999754 24568999
Q ss_pred ChHHHH
Q 016319 372 YFEEMN 377 (391)
Q Consensus 372 YFdeMD 377 (391)
||+.|.
T Consensus 78 ~~~~l~ 83 (85)
T PF10545_consen 78 YYEELS 83 (85)
T ss_pred HHHHCc
Confidence 999884
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.66 E-value=7.7e-05 Score=54.25 Aligned_cols=47 Identities=34% Similarity=0.645 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
..||.+|...|+++...+-.. -|..||..|. -.||+.||+.+|.+++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---------~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---------NWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---------HHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCc---------HHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 579999999999988652211 7999999985 5799999999999874
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.43 E-value=0.00019 Score=53.80 Aligned_cols=43 Identities=42% Similarity=0.868 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 016319 299 WRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSS-LL 355 (391)
Q Consensus 299 WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKN-LK 355 (391)
||.+|...|++++..+. .-|..||..|. +||+.||+.||.+ |.
T Consensus 1 WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----------NDWKKIAEHLG----NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----------S-HHHHHHHST----TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHC----------cCHHHHHHHHC----cCCHHHHHHHHHHHCc
Confidence 99999999999998741 14999999973 7999999999998 54
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.37 E-value=0.0003 Score=48.57 Aligned_cols=47 Identities=34% Similarity=0.751 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
..||.+|...|+.+...+-. .-|..||..|. .||+.||+.+|.++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 57999999999998876422 45999999985 8999999999998763
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.19 E-value=0.00055 Score=46.67 Aligned_cols=45 Identities=36% Similarity=0.767 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 298 KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 298 ~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
.||.+|...|+.+...+-. .-|..||..|.. ||+.||+.+|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~----rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG----RTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC----CCHHHHHHHHHHhC
Confidence 4999999999999876421 459999999853 99999999998863
No 11
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=96.92 E-value=0.0042 Score=66.55 Aligned_cols=118 Identities=21% Similarity=0.374 Sum_probs=100.9
Q ss_pred hcchhhhhhhccCCCcccccccccchhhhhccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeee--cCcchHH
Q 016319 19 SLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWL--DKGKLLD 96 (391)
Q Consensus 19 ~lG~~~l~~~yndG~k~~Gt~~dl~i~eR~~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~--D~GkL~~ 96 (391)
.-|+.+....|=||. +.|.-.+..+-||..+|-+|||+|.+-+=+.. ..+-++..|.|||+=. +.++|+.
T Consensus 434 ~~~~v~~g~~~iDg~-~~gdvg~~vl~dR~~lse~G~v~v~v~~d~~~-------~~~~~~p~~~~rG~~~~~~~~~~~~ 505 (555)
T COG0595 434 VIGKVPAGDVYIDGN-GIGDVGAIVLRDRRQLSEDGIVIVVVVIDKKK-------KKILAGPEISSRGFVYVKESEKLIE 505 (555)
T ss_pred ccCccccCCeEEcCC-CCCcchhhHHHHHHhcCcCCEEEEEEEEcCCC-------CeeccCCcEEeccccccccchHHHH
Confidence 457778888888875 67899999999999999999999988776543 6789999999999987 5666877
Q ss_pred HHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Q 016319 97 ALHKAAHAALSSCPVNC-PLAHVEKTVSEVLRKVVRKYSSKRPEVIAVA 144 (391)
Q Consensus 97 ~l~kaa~~al~~~~~~~-~l~~~Er~v~~~lr~~~~ky~~krPevi~~a 144 (391)
...+.+.+++.+++..- .+..+.+.|.++|++..++--.|+|=|+.+.
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~lk~~ir~~l~~~~~~~~~r~P~i~~~i 554 (555)
T COG0595 506 EALELVENALESFLQEKFDWKELKESIRRALRKFLYKKTKRRPLILPTV 554 (555)
T ss_pred HHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Confidence 77778899999887665 7889999999999999999999999988764
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.04 E-value=0.017 Score=56.55 Aligned_cols=51 Identities=25% Similarity=0.607 Sum_probs=40.1
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
..++..||.+|-..|+++...+ . ..-|..||..| |..||+.||+.+|.|..
T Consensus 22 glKRg~WT~EEDe~L~~lV~ky----G-----~~nW~~IAk~~---g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKE----G-----EGRWRSLPKRA---GLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh----C-----cccHHHHHHhh---hcCCCcchHHHHHHHhh
Confidence 4667889999999999876543 1 13499999775 57799999999999654
No 13
>PLN03091 hypothetical protein; Provisional
Probab=94.39 E-value=0.063 Score=56.46 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=39.0
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSS 353 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKN 353 (391)
..++..||.+|-..|+++...+ . ..-|..||..| |..|++.||+.+|.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky----G-----~~nWs~IAk~~---g~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY----G-----HGCWSSVPKQA---GLQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh----C-----cCCHHHHhhhh---ccCcCcchHhHHHHh
Confidence 3567789999999999887542 1 13699999764 678999999999985
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.38 E-value=0.21 Score=49.10 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=42.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEE 360 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKK 360 (391)
.....||.+|-..||+++.. |. .-|..||..| -.||..||+++|.++.++...
T Consensus 76 I~kgpWT~EED~lLlel~~~----~G------nKWs~IAk~L----pGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRL----LG------NRWSLIAGRI----PGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cccCCCChHHHHHHHHHHHh----cc------ccHHHHHhhc----CCCCHHHHHHHHHHHHhHHHH
Confidence 35679999999999988643 21 3599999988 359999999999988876533
No 15
>PLN03091 hypothetical protein; Provisional
Probab=93.28 E-value=0.3 Score=51.53 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEES 361 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKi 361 (391)
....||.+|-..||+++.. | ..-|..||..| -.||..||+++|..+.++|.+.
T Consensus 66 kKgpWT~EED~lLLeL~k~----~------GnKWskIAk~L----PGRTDnqIKNRWnslLKKklr~ 118 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAV----L------GNRWSQIAAQL----PGRTDNEIKNLWNSCLKKKLRQ 118 (459)
T ss_pred cCCCCCHHHHHHHHHHHHH----h------CcchHHHHHhc----CCCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998864 2 13599999988 4699999999999988877653
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=89.12 E-value=0.57 Score=51.16 Aligned_cols=65 Identities=28% Similarity=0.392 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH-hhhh----------ccc-----chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHS-KFQV----------VKG-----RMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~-rF~~----------~kR-----N~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
.++..|+-+|...||++..++.. .++. ... ..--|-.|++.| -.|+..||+.||..|...
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 47899999999999999988543 2221 111 234599998844 469999999999999988
Q ss_pred HHHhh
Q 016319 358 YEESK 362 (391)
Q Consensus 358 YKKiK 362 (391)
+-..+
T Consensus 510 ~s~n~ 514 (607)
T KOG0051|consen 510 PSFNK 514 (607)
T ss_pred HHhhc
Confidence 76554
No 17
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=85.89 E-value=4 Score=34.56 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhccc--chHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKG--RMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kR--N~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
...||++.=..||+-.-++...-..... -...++.|...| .+..|..|..+|++.||++|.....
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l---~~~~s~~Ql~~KirrLK~Ky~~~~~ 70 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL---SFDVSKNQLYDKIRRLKKKYRNAVK 70 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3569988777888877776554432211 246777777665 4678999999999999999999743
No 18
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=81.72 E-value=1.4 Score=47.41 Aligned_cols=52 Identities=17% Similarity=0.408 Sum_probs=41.4
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 292 KGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 292 K~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
...-+..||++||.+||+.-.. | ...|..||.+.. .||.+||-.||-.|-..
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~----y------~ddW~kVa~hVg----~ks~eqCI~kFL~LPie 300 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEM----Y------GDDWNKVADHVG----TKSQEQCILKFLRLPIE 300 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHH----h------cccHHHHHhccC----CCCHHHHHHHHHhcCcc
Confidence 4456889999999999986533 2 357999998864 89999999999887543
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=79.94 E-value=1.6 Score=41.81 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSS 353 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKN 353 (391)
.-.||.+|=..|++....+-. .-|..|+..+ |..|++++||.+|-|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~---------~~W~~i~k~~---gl~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGK---------HNGTALPKLA---GLRRCGKSCRLRWTN 54 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCC---------CCcchhhhhc---CCCccchHHHHHhhc
Confidence 578999999999987755222 1688888765 669999999999986
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.21 E-value=5.4 Score=37.26 Aligned_cols=60 Identities=27% Similarity=0.505 Sum_probs=45.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHHh
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ-KYEES 361 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk-~YKKi 361 (391)
.|-..||.+|-.+|-++--.+- ..+...-.-|++++..| +||+.-|.-+|++..+ +|...
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhI---ReG~TQL~AFeEvg~~L-----~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHI---REGSTQLSAFEEVGRAL-----NRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHH-----cccHHHhcchHHHHHHHHHHHH
Confidence 3678899999988877654422 23344557799999997 6999999999998765 48875
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=76.61 E-value=7.2 Score=43.64 Aligned_cols=54 Identities=28% Similarity=0.585 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEE 360 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKK 360 (391)
+...|+.+|...|+++=. ..+..-|+.||..| |-+|+.-||-.||+.-.+..++
T Consensus 252 nk~~WS~EE~E~L~AiA~---------A~~~~~W~~IA~~L---gt~RS~yQC~~kF~t~~~~L~e 305 (939)
T KOG0049|consen 252 NKEHWSNEEVEKLKALAE---------APKFVSWPMIALNL---GTNRSSYQCMEKFKTEVSQLSE 305 (939)
T ss_pred chhccChHHHHHHHHHHh---------ccccccHHHHHHHh---CCCcchHHHHHHHHHHHHHHHh
Confidence 678999999998888753 23456699999876 8899999999999987665443
No 22
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=75.39 E-value=4.6 Score=43.38 Aligned_cols=49 Identities=20% Similarity=0.446 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
+..+|+.+|+.+||+-... | ..-|.+||.+.. .+|.+||--||=+|-..
T Consensus 278 ~dk~WS~qE~~LLLEGIe~----y------gDdW~kVA~HVg----tKt~EqCIl~FL~LPie 326 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM----Y------GDDWDKVARHVG----TKTKEQCILHFLQLPIE 326 (531)
T ss_pred ccccccHHHHHHHHHHHHH----h------hhhHHHHHHHhC----CCCHHHHHHHHHcCCcc
Confidence 5669999999999875433 2 347999998864 79999999999888655
No 23
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=68.87 E-value=14 Score=34.83 Aligned_cols=60 Identities=23% Similarity=0.480 Sum_probs=44.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHHh
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ-KYEES 361 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk-~YKKi 361 (391)
.|...||.++=.+|-++.-++- ..+...-..++++...| .||+.+|..+|+...+ +|..-
T Consensus 3 ~rqdawt~e~d~llae~vl~~i---~eg~tql~afe~~g~~L-----~rt~aac~fRwNs~vrk~Yee~ 63 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHI---REGGTQLKAFEEVGDAL-----KRTAAACGFRWNSVVRKQYQEQ 63 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHH---hccchHHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHHH
Confidence 3678899999988866665532 23445667888888887 5899999999966544 47763
No 24
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.08 E-value=3.6 Score=34.70 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=14.6
Q ss_pred eeeeeecCcchHHHHHHH
Q 016319 84 TRCLWLDKGKLLDALHKA 101 (391)
Q Consensus 84 tr~~W~D~GkL~~~l~ka 101 (391)
-||.|+|+|-|-.+|.+-
T Consensus 27 CrGVWLDrGELdKli~r~ 44 (88)
T COG3809 27 CRGVWLDRGELDKLIERS 44 (88)
T ss_pred cccEeecchhHHHHHHHh
Confidence 589999999988777553
No 25
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=49.61 E-value=24 Score=34.99 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh-hhcccchHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHH-hhc-----C----
Q 016319 297 NKWRPEEVKKLIKMRGELHSKF-QVVKGRMALWKEISTHLANE-GFNRTPSQCKSRWSSLLQKYEE-SKS-----G---- 364 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF-~~~kRN~~VWEeIA~kL~e~-Gy~RTaeQCr~KWKNLKk~YKK-iKd-----G---- 364 (391)
..|...-.+++|.+.++.-... ..+......|+.|+-.+-.+ |.-.+...++.=|++.|...++ ++. +
T Consensus 18 ~~~~~~~kk~il~~i~~~p~lw~~~~~~~~~~~~~v~v~vy~Rtg~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~l~~~ 97 (313)
T PF03353_consen 18 AKKDVELKKVILSEIEKFPELWKKKSRVPNEEWEEVAVEVYKRTGKLVSVKHIRSIFKNAKDSLRRRLRKCIKKKKLSPE 97 (313)
T ss_pred chhhHHHHHHHHHHHhcChHhhhccCCccHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3455555566666666543333 34455678999999998654 9999999999999999988665 221 1
Q ss_pred ---CCCCCCcChHHH
Q 016319 365 ---NSQKSWPYFEEM 376 (391)
Q Consensus 365 ---~~rksWpYFdeM 376 (391)
..-..|+||..|
T Consensus 98 ~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 98 ETEEKLWKWELYPFI 112 (313)
T ss_pred HHHHHHHcCCccchh
Confidence 223468888665
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=46.71 E-value=50 Score=25.56 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHH---HHHHHHHHhcCCCC-CHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALW---KEISTHLANEGFNR-TPSQCKSRW 351 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VW---EeIA~kL~e~Gy~R-TaeQCr~KW 351 (391)
.+..||++|-..+|+....+ .. .-| +.|++.| +..+ |..||++-.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~----G~-----g~~a~pk~I~~~~---~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKL----GG-----PDWATPKRILELM---VVDGLTRDQVASHL 50 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHh----CC-----CcccchHHHHHHc---CCCCCCHHHHHHHH
Confidence 36789999999999888653 11 137 7787665 4455 999998753
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=46.65 E-value=50 Score=31.66 Aligned_cols=53 Identities=26% Similarity=0.484 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHHHHHh
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL-LQKYEES 361 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL-Kk~YKKi 361 (391)
.+..||.+|...+|++...+-. + |..||..|- -||...+++=|..- |+++++.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN--------r--Ws~IA~~LP----GRTDNeIKN~Wnt~lkkkl~~~ 114 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN--------R--WSLIAGRLP----GRTDNEVKNHWNTHLKKKLLKM 114 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc--------H--HHHHHhhCC----CcCHHHHHHHHHHHHHHHHHHc
Confidence 4779999999999998865322 2 999999985 48999998888654 5556553
No 28
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=44.92 E-value=1.4e+02 Score=22.76 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 016319 300 RPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESK 362 (391)
Q Consensus 300 T~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiK 362 (391)
+.+++..++.-...+...+......-..-...+..|...+ .-....++.+...|...|..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~ 93 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALC 93 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888777765555555667788886555 6677999999999999988875
No 29
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.33 E-value=56 Score=36.96 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=46.7
Q ss_pred eeeeEEEeeee-eeecCcc--hH------HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCc
Q 016319 76 LKGKIRITTRC-LWLDKGK--LL------DALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPE 139 (391)
Q Consensus 76 l~~k~Rittr~-~W~D~Gk--L~------~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPe 139 (391)
=+-++||||-+ .|+|.+- +. ++.--.|.-|+.++... .-..|.|.+...|.+.|.||..-++|
T Consensus 475 g~~riRVtT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e-~~~d~~rwlDr~Lirlc~kFg~y~k~ 546 (745)
T KOG1986|consen 475 GQKRIRVTTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETE-DGPDVLRWLDRNLIRLCQKFGDYRKD 546 (745)
T ss_pred CcEEEEEEEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhcc-ccchHHHHHHHHHHHHHHHHhccCCC
Confidence 35689999987 5998874 11 11222344566777766 78899999999999999999987775
No 30
>PF14501 HATPase_c_5: GHKL domain
Probab=40.05 E-value=27 Score=28.35 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=35.0
Q ss_pred CCcEEEEeccCCcccchhhhhhhhcCCCccccChhhhhhhhccCCc
Q 016319 137 RPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVDRHPK 182 (391)
Q Consensus 137 rPevi~~a~e~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 182 (391)
..+-++|..+|+...-.+.+....+-+.+-|+|+...++.+..|+.
T Consensus 37 ~~~~~~i~i~N~~~~~~~~~~~~~~~~~~~G~GL~~v~~i~~~y~g 82 (100)
T PF14501_consen 37 ENGFLVIIIENSCEKEIEKLESSSSKKKGHGIGLKNVKKILEKYNG 82 (100)
T ss_pred cCCEEEEEEEECCCCccccccccccCCCCCCcCHHHHHHHHHHCCC
Confidence 3466777788887775455555556677889999999999999965
No 31
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=37.16 E-value=2.4e+02 Score=23.59 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hhhhcccchHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHS-KFQVVKGRMALWKEISTHLANEGFN--------RTPSQCKSRWSSLLQKYE 359 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~-rF~~~kRN~~VWEeIA~kL~e~Gy~--------RTaeQCr~KWKNLKk~YK 359 (391)
+....+.++|..++.+-.++.. .+.....-.+.++..-+.|...|.. .+..||+.-.+-+...|-
T Consensus 8 ~~~~fs~~q~s~~~~i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~rpp~~~~iFs~~~~~~i~~y~~~t~f 81 (101)
T PF14769_consen 8 KEQGFSWEQTSAFLSILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQRPPFSIGIFSVDQVKAIIDYFHNTYF 81 (101)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhccCCCCcccCcCCHHHHHHHHHHHHHHHH
Confidence 4567888999999999999766 4443344568899999999999998 789999998888887753
No 32
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=35.03 E-value=29 Score=37.75 Aligned_cols=52 Identities=29% Similarity=0.616 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEE 360 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKK 360 (391)
....|+.+|-..||.+..++-.+ |..|+..+-. |++.||.++|.++...|-+
T Consensus 71 k~~~~~~eed~~li~l~~~~~~~----------wstia~~~d~----rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGTQ----------WSTIADYKDR----RTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCch----------hhhhccccCc----cchHHHHHHHHHHhhhhhc
Confidence 47889999999999998764322 8888766422 9999999999999988877
No 33
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=33.17 E-value=1.2e+02 Score=29.91 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=43.5
Q ss_pred eeeEEEeeeeeeecCc--chHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 016319 77 KGKIRITTRCLWLDKG--KLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRK 128 (391)
Q Consensus 77 ~~k~Rittr~~W~D~G--kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~ 128 (391)
.|-+--+||-.++... +|.++.+.|.++|+..++.+.++..|-+++.++++.
T Consensus 90 dGY~aD~arT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~ 143 (295)
T TIGR00501 90 DGYIADTAITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIES 143 (295)
T ss_pred CCEEEEEEEEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3446667788887653 799999999999999999999999999998888766
No 34
>PLN00162 transport protein sec23; Provisional
Probab=30.48 E-value=1e+02 Score=34.83 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=43.3
Q ss_pred eeeEEEeeeee-eecCcchHHHH---------HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCc
Q 016319 77 KGKIRITTRCL-WLDKGKLLDAL---------HKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPE 139 (391)
Q Consensus 77 ~~k~Rittr~~-W~D~GkL~~~l---------~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPe 139 (391)
+=+|||||-++ |++-..+.+.. .=.|..|+.++.. ..+..+-|-+.+.|.+.|.+|..-|.+
T Consensus 492 ~rRiRV~T~~~~~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~-~~~~d~~r~ld~~li~~~~~f~~Yrk~ 563 (761)
T PLN00162 492 QTRLRVTTVTRRWVEGSSSEELVAGFDQEAAAVVMARLASHKMET-EEEFDATRWLDRALIRLCSKFGDYRKD 563 (761)
T ss_pred CEEEEEEccccCccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 56899999987 88765553322 2233444455543 367888899999999999999876653
No 35
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=30.28 E-value=1.2e+02 Score=26.67 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHHH
Q 016319 302 EEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANE-GF-NRTPSQCKSRWSSLLQKY 358 (391)
Q Consensus 302 eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~-Gy-~RTaeQCr~KWKNLKk~Y 358 (391)
=||..+++-.-.+-..|.. .....+|+.++.+|.+- -+ ..+.++++..+....+.+
T Consensus 45 ~ET~vilds~Lg~v~~~Dk-~~~D~iW~~~s~kl~kYr~fl~Id~~kyk~~~~eti~~~ 102 (103)
T PF08994_consen 45 LETFVILDSFLGFVDKFDK-VLTDPIWKNYSTKLKKYRPFLKIDCEKYKKLFIETIKSC 102 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHH-H---HHHHHHHHHHHHHHHHEEE-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhHHhhhh-hccchhHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhc
Confidence 4899999988887777776 56789999999998763 22 567778887777666554
No 36
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=29.75 E-value=1.2e+02 Score=26.83 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEec-cCCcccchhhhhhhh
Q 016319 95 LDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAM-ENPAAVLSDELNARL 160 (391)
Q Consensus 95 ~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~-e~~~~~~~~~~~~~~ 160 (391)
.+.+.++.+..|. +.++-++-+-+.+++.++....+|++..|=||.|-. ++|.-+-.|-|-.|+
T Consensus 45 ~eei~~~~~~~l~--~~digIIlIte~~a~~i~~~I~~~~~~~PaIieIP~k~~~y~~~~d~i~~~~ 109 (115)
T TIGR01101 45 VSEIEDCFNRFLK--RDDIAIILINQHIAEMIRHAVDAHTRSIPAVLEIPSKDHPYDASKDSILRRA 109 (115)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEEcHHHHHHhHHHHHhcCCcCCEEEEECCCCCCCCCcccHHHHHH
Confidence 4567777777776 678899999999999999999999999999999988 888888777777665
No 37
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=27.51 E-value=3e+02 Score=28.62 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=49.6
Q ss_pred hhhhccCCCcccccccccchhhhhccccceeEEEEEEeecCCCCCCCC-----------ccceeeeEEEeeeeeeecCcc
Q 016319 25 LQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQS-----------GYSLKGKIRITTRCLWLDKGK 93 (391)
Q Consensus 25 l~~~yndG~k~~Gt~~dl~i~eR~~ia~eGiivv~~ev~r~~~~~~~~-----------~~~l~~k~Rittr~~W~D~Gk 93 (391)
+|+..-=|+.-.....+. ......+||+++|.+|......+ ....-+++++-.++-.
T Consensus 206 lkinaKlGG~~w~l~~~~-------~~~~~tmiiGidv~h~~~~~~~Si~a~vas~~~~~~~~~~~~~~q~~~~e----- 273 (448)
T cd04658 206 LQINAKLGGIPWTVEIPP-------FILKNTMIVGIDVYHDTITKKKSVVGFVASLNKSITKWFSKYISQVRGQE----- 273 (448)
T ss_pred HHHHHHhCCcceEeccCC-------CCCCCeEEEEEeeecCCCCCCCcEEEEEEEcCCCCceEeeEEEEeCCCce-----
Confidence 455555565544433221 23578999999999986422121 1222233443332221
Q ss_pred hHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEE
Q 016319 94 LLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAV 143 (391)
Q Consensus 94 L~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~ 143 (391)
.....|+.++.++|+.- ++.+++.|+=|+|
T Consensus 274 -------------------~~~~~l~~~~~~~l~~y-~~~~~~~P~~Iii 303 (448)
T cd04658 274 -------------------EIIDSLGKSMKKALKAY-KKENKKLPSRIII 303 (448)
T ss_pred -------------------eeHHHHHHHHHHHHHHH-HHHhCCCCceEEE
Confidence 13566788888888754 5567899995555
No 38
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=26.90 E-value=1.7e+02 Score=28.74 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=41.4
Q ss_pred eeEEEeeeeeeecCc--chHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 016319 78 GKIRITTRCLWLDKG--KLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKV 129 (391)
Q Consensus 78 ~k~Rittr~~W~D~G--kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~ 129 (391)
+-+--++|-+++... +|.++.+.|.++|+..|.++.++..|-+++.++++..
T Consensus 87 GY~sD~arT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~ 140 (291)
T cd01088 87 GYIADSAFTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESY 140 (291)
T ss_pred CEEEEEEEEEecChhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHc
Confidence 345567787776543 6888899999999999999999999988887776653
No 39
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.27 E-value=1e+02 Score=30.64 Aligned_cols=38 Identities=32% Similarity=0.471 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhhcCCCccccChhhhhhhhc
Q 016319 117 HVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLSGNSHVGFGMPALRKMVD 178 (391)
Q Consensus 117 ~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 178 (391)
.+|+.+.+++. .-+||+|++..-||+|| |+.+.|.+++
T Consensus 47 ~veaav~~~~e-------~~~pDfvi~isPNpaaP-----------------GP~kARE~l~ 84 (277)
T COG1927 47 CVEAAVTEMLE-------EFNPDFVIYISPNPAAP-----------------GPKKAREILS 84 (277)
T ss_pred HHHHHHHHHHH-------hcCCCEEEEeCCCCCCC-----------------CchHHHHHHh
Confidence 46777776554 35899999999999986 6667776665
No 40
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=26.12 E-value=69 Score=29.55 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q 016319 297 NKWRPEEVKKLIKMRGE 313 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E 313 (391)
+.||++.+..|=++|.+
T Consensus 1 M~Wtde~~~~L~~lw~~ 17 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAE 17 (162)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 47999999999999988
No 41
>TIGR03619 F420_Rv2161c probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria.
Probab=26.08 E-value=2.9e+02 Score=26.47 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=49.7
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhh
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNAR 159 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~ 159 (391)
-+|+- |.=...+..||..+..=+....+...+.+.+ +.++..|.++....++|-+.+.......-++++-.+
T Consensus 159 pi~va-g~~~~~~~~Aa~~adg~~~~~~~~~~~~~~~-~~~~~~~~~~Gr~~~~~~~~~~~~~~~g~~~~~~~~ 230 (246)
T TIGR03619 159 PIWIG-GNSEAALRRAARLGDGWMPFGPPVDRLAAAV-ARLRDLAAAAGRDPDAVEVVLVRTDPDGDADADAED 230 (246)
T ss_pred CEEEe-CCCHHHHHHHHHHCCEeccCCCCHHHHHHHH-HHHHHHHHHcCCCccceeEEeeccccCCCHHHHHHH
Confidence 47887 5668889999999887777667777777665 789999999976655666666543333333444333
No 42
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=25.64 E-value=1.4e+02 Score=25.95 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=36.8
Q ss_pred cceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecCc-chHHHHHHHHHHHhhcCC
Q 016319 52 SDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKG-KLLDALHKAAHAALSSCP 110 (391)
Q Consensus 52 ~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~G-kL~~~l~kaa~~al~~~~ 110 (391)
.+||.++++.|=-|-.. .-++||.| +.| .-.++|.+|+...+..|.
T Consensus 39 d~~V~~a~Y~i~HP~~~--------~~~i~Ikt-----~~~~dp~~aL~~A~~~i~~~~~ 85 (99)
T COG1761 39 DEDVEFAAYSIPHPLID--------NPKIRIKT-----KGGVDPKEALKRAARKILKDLE 85 (99)
T ss_pred CCCeeEEEEeCCCCCCC--------CceEEEEE-----CCCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999887422 56788875 667 889999999999887763
No 43
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.41 E-value=27 Score=24.82 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=12.6
Q ss_pred eeeeeecCcchHHHHH
Q 016319 84 TRCLWLDKGKLLDALH 99 (391)
Q Consensus 84 tr~~W~D~GkL~~~l~ 99 (391)
-.|+|+|.|-|...+.
T Consensus 25 C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 25 CGGIWFDAGELEKLLE 40 (41)
T ss_pred CCeEEccHHHHHHHHh
Confidence 3689999998877654
No 44
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=25.13 E-value=1.3e+02 Score=25.07 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=36.5
Q ss_pred cccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecCcchHHHHHHHHHHHhhcC
Q 016319 50 IASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSC 109 (391)
Q Consensus 50 ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~GkL~~~l~kaa~~al~~~ 109 (391)
+...+|.++++.|=-|-. -+-.+||.|++ ...-.++|.+|+.....-|
T Consensus 31 ~~~p~V~fagY~vpHPl~--------~~~~lriqT~~----~~~p~~al~~a~~~l~~~~ 78 (85)
T cd07029 31 MKNPEVEFCGYSIPHPSE--------NKINLRIQTKG----GEPAVDVLKKGLEDLEQIC 78 (85)
T ss_pred hhCCCceEEeecccCCCC--------CccEEEEEeCC----CCCHHHHHHHHHHHHHHHH
Confidence 457889999998877732 26689999986 5788889999888776655
No 45
>KOG0397 consensus 60S ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=1.7e+02 Score=27.44 Aligned_cols=84 Identities=26% Similarity=0.364 Sum_probs=61.3
Q ss_pred eEEEeeeeeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhh
Q 016319 79 KIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNA 158 (391)
Q Consensus 79 k~Rittr~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~ 158 (391)
.++|.--||=+-=|.-.|-|.+||. +|..+.+..|+.+ --||++|.|.-+|-|-||+-..-.. +.|+||=.
T Consensus 12 el~i~KL~lnIcvgESGdrLtRAaK-vLEQLtGQ~pvfs-------karyTvR~fGirRNEKIAvh~tVrG-~KAeeiLe 82 (176)
T KOG0397|consen 12 ELKIQKLVLNICVGESGDRLTRAAK-VLEQLTGQTPVFS-------KARYTVRSFGIRRNEKIAVHVTVRG-PKAEEILE 82 (176)
T ss_pred hhhhheeeEEEeecccchHHHHHHH-HHHHhcCCCccch-------hhhhhHHhhccccCceEEEEEEeeC-ccHHHHHH
Confidence 4677788888888888899999885 5777777777543 4689999999999999987554433 44454432
Q ss_pred -------------hhcCCCccccChh
Q 016319 159 -------------RLSGNSHVGFGMP 171 (391)
Q Consensus 159 -------------~~~g~~~~~~g~~ 171 (391)
-.|-.-..|||+-
T Consensus 83 ~gLkVkeYeL~~~nFS~tgnFGFGiq 108 (176)
T KOG0397|consen 83 RGLKVKEYELRKRNFSDTGNFGFGIQ 108 (176)
T ss_pred hccchhhhhhhhhcccccCCcccchh
Confidence 2466667888874
No 46
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=24.83 E-value=1.2e+02 Score=27.34 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=62.3
Q ss_pred eecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEec-cCCcccchhhhhhhhcCCCcc
Q 016319 88 WLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAM-ENPAAVLSDELNARLSGNSHV 166 (391)
Q Consensus 88 W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~-e~~~~~~~~~~~~~~~g~~~~ 166 (391)
=+|+---.+.|..|-..-++ +.++-++-+-|.++|.+|..+-.|++--|-|..|+. ++|--+.-|-|=.|.-|=
T Consensus 40 vv~~~Tt~~eiedaF~~f~~--RdDIaIiLInq~~Ae~iR~~vD~h~~~vPAvLeIpSKdhPYd~~kDSiL~R~r~~--- 114 (121)
T KOG3432|consen 40 VVDSKTTVEEIEDAFKSFTA--RDDIAIILINQFIAEMIRDRVDAHTQAVPAVLEIPSKDHPYDPSKDSILRRARGL--- 114 (121)
T ss_pred EEeccCCHHHHHHHHHhhcc--ccCeEEEEEhHHHHHHHHHHHHhccccCCeeEEecCCCCCCCchHHHHHHHHHhc---
Confidence 34444456677766554444 899999999999999999999999999999999986 567888888888887665
Q ss_pred ccChhh
Q 016319 167 GFGMPA 172 (391)
Q Consensus 167 ~~g~~~ 172 (391)
||...
T Consensus 115 -f~~e~ 119 (121)
T KOG3432|consen 115 -FGPED 119 (121)
T ss_pred -cChhh
Confidence 66543
No 47
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=24.57 E-value=1.4e+02 Score=27.78 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=44.8
Q ss_pred eeeeeeec-C-----cchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCC
Q 016319 83 TTRCLWLD-K-----GKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKR 137 (391)
Q Consensus 83 ttr~~W~D-~-----GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~kr 137 (391)
.||..++. + =++.+++..|-.+++..++.+.++..|-+.+.+.+++.-++|+..+
T Consensus 91 ~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~ 151 (243)
T cd01087 91 ITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILK 151 (243)
T ss_pred eeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCccc
Confidence 36776662 1 2577788888888999999999999999999999999988888654
No 48
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=24.10 E-value=1.2e+02 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 016319 93 KLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRK 128 (391)
Q Consensus 93 kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~ 128 (391)
+|.++...|-++|++.|+.+.++..|-+.+.+.+++
T Consensus 113 ~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~ 148 (228)
T cd01090 113 KIWEANVAVHERGLELIKPGARCKDIAAELNEMYRE 148 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 577888889999999999999999999999888865
No 49
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=23.97 E-value=1.3e+02 Score=34.24 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=39.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKY 358 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~Y 358 (391)
...-.|+++|-..|++.-.++.. +-|-.|.+.. -+|+..||++++.|....-
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~---------kdw~k~R~~v----PnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGA---------KDWAKVRQAV----PNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCc---------cchhhHHHhc----CCccHHHHHHHHHHHHHHh
Confidence 45778999999999998876543 4576776553 3799999999999877653
No 50
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=23.18 E-value=1.3e+02 Score=32.50 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=48.6
Q ss_pred eeeeEEEeeeeeeecC--cchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCC
Q 016319 76 LKGKIRITTRCLWLDK--GKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSK 136 (391)
Q Consensus 76 l~~k~Rittr~~W~D~--GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~k 136 (391)
+.|-+=-++|-++++. -+|+++.+.|.++|+..|+.+.++..|-++|.+++...-+.++++
T Consensus 248 vdGYiaD~ArTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~Gk 310 (470)
T PTZ00053 248 VNGRIIDCAFTVAFNPKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGK 310 (470)
T ss_pred ECCEEEeEEEEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcccCc
Confidence 4456667788888864 379999999999999999999999999999988887754433344
No 51
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=75 Score=32.95 Aligned_cols=90 Identities=21% Similarity=0.454 Sum_probs=57.8
Q ss_pred CCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhhh--hcccchHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHH-HHH
Q 016319 284 SSSQPKPSKGVRRNKWRPEEVKKLIKMRGELHSKFQ--VVKGRMALWKEISTHLANEGFNR-TPSQCKSRWSSLLQ-KYE 359 (391)
Q Consensus 284 ~~sepK~sK~~R~~~WT~eETklLIeLw~E~e~rF~--~~kRN~~VWEeIA~kL~e~Gy~R-TaeQCr~KWKNLKk-~YK 359 (391)
.++||.| +-+.....|-.----|.++|-. .+|- ---....+---|+.+..-.||+- +-.||-+||+.--+ -|.
T Consensus 149 kHge~Ap-rLCNKDPftlk~~~yl~rLfPN--AKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~tkWN~aie~M~~ 225 (378)
T KOG3988|consen 149 KHGEPAP-RLCNKDPFTLKSLVYLSRLFPN--AKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMTKWNQAIEVMYF 225 (378)
T ss_pred hcCCccc-ccccCCchHHHHHHHHHHHCCC--ceEEEEEecchHHHHHHHhccceeccccchHHHHHHHHHHHHHHHHHH
Confidence 4555554 3566666664433334333322 1222 11234677778888888889976 67899999987544 488
Q ss_pred Hhhc-CCCCCCCcChHHH
Q 016319 360 ESKS-GNSQKSWPYFEEM 376 (391)
Q Consensus 360 KiKd-G~~rksWpYFdeM 376 (391)
.+.+ |...+---||+++
T Consensus 226 QC~~vg~~~Cl~VyYEqL 243 (378)
T KOG3988|consen 226 QCMEVGKKKCLKVYYEQL 243 (378)
T ss_pred HHHhccccchhHHHHHHH
Confidence 8887 7777777788875
No 52
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.81 E-value=4.9e+02 Score=22.30 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 016319 300 RPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 300 T~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
+..++..+|+-...+...+......-.-...++..|...+..-.+..+..+..+|...|..+..
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 200 (213)
T cd00176 137 DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLE 200 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988888888766666677778888888888777778899999999999988753
No 53
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=21.72 E-value=62 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=20.4
Q ss_pred cCcchHHHHHHHHHHHhhcCCCCC
Q 016319 90 DKGKLLDALHKAAHAALSSCPVNC 113 (391)
Q Consensus 90 D~GkL~~~l~kaa~~al~~~~~~~ 113 (391)
..|.+.+.+...+..|...||+.|
T Consensus 39 ~~~~v~~~~~~~~~~Aa~~CP~~a 62 (65)
T PF13459_consen 39 GEGEVPEEDEEDVREAAEACPVGA 62 (65)
T ss_pred cccCCCchhHHHHHHHHHhCCHhh
Confidence 467888888889999999999876
No 54
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=21.23 E-value=2.1e+02 Score=27.45 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=48.8
Q ss_pred ccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecCc----chHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 016319 49 RIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKG----KLLDALHKAAHAALSSCPVNCPLAHVEKTVSE 124 (391)
Q Consensus 49 ~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~G----kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~ 124 (391)
.+.-+|+|++++-.. +.+..+.+ ||-++++-- ++.+++..|-.+++..|+++.++..|-+.+.+
T Consensus 87 ~~~~~~~vl~d~G~~---------y~gY~sdi---tRT~~v~p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~ 154 (243)
T cd01091 87 LLYHFGVIICSLGAR---------YKSYCSNI---ARTFLIDPTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLD 154 (243)
T ss_pred ccCCCCEEEEEeCcc---------cCCEeecc---eEEEEcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 445567777765422 23344443 777777632 46677777888899999999999999999888
Q ss_pred HHHHH
Q 016319 125 VLRKV 129 (391)
Q Consensus 125 ~lr~~ 129 (391)
.+.+.
T Consensus 155 ~i~~~ 159 (243)
T cd01091 155 YIKKK 159 (243)
T ss_pred HHHHh
Confidence 88763
No 55
>PRK08671 methionine aminopeptidase; Provisional
Probab=21.12 E-value=2.4e+02 Score=27.78 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=41.0
Q ss_pred eeeEEEeeeeeeecC--cchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 016319 77 KGKIRITTRCLWLDK--GKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRK 128 (391)
Q Consensus 77 ~~k~Rittr~~W~D~--GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~ 128 (391)
.+-+--++|-.|+.. -+|.++.+.|.++|+..++.+.++..|-+++.++++.
T Consensus 87 dGY~aD~arT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~ 140 (291)
T PRK08671 87 DGYIADTAVTVDLGGKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRS 140 (291)
T ss_pred CCEEEEEEEEEEeChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344666788888752 3688899999999999999999999988777665554
No 56
>PRK05716 methionine aminopeptidase; Validated
Probab=20.73 E-value=1.5e+02 Score=27.60 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=37.5
Q ss_pred EeeeeeeecC-----cchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 016319 82 ITTRCLWLDK-----GKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRK 128 (391)
Q Consensus 82 ittr~~W~D~-----GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~ 128 (391)
--||-+++-+ =+|.+++..|..+++..|+.+.++..|-+++.+.+++
T Consensus 106 d~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~ 157 (252)
T PRK05716 106 DTSRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEA 157 (252)
T ss_pred EeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3577777722 2467777788888999999999999999998888776
No 57
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=20.29 E-value=2.4e+02 Score=26.13 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=36.6
Q ss_pred eeeeeeecCc-----chHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 016319 83 TTRCLWLDKG-----KLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKV 129 (391)
Q Consensus 83 ttr~~W~D~G-----kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~ 129 (391)
.||-+|+.+- ++.+++..|-.+++..++.+.++..|-+++.+.+++.
T Consensus 97 ~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~ 148 (238)
T cd01086 97 SARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKN 148 (238)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 4788888542 4566666777788999999999999988888877663
No 58
>PRK10879 proline aminopeptidase P II; Provisional
Probab=20.10 E-value=2.7e+02 Score=29.10 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=43.9
Q ss_pred eeeeeeecCc-------chHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCC
Q 016319 83 TTRCLWLDKG-------KLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSK 136 (391)
Q Consensus 83 ttr~~W~D~G-------kL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~k 136 (391)
.||..++ +| ++-+++.+|-.+|++.|+++.++..|-+++.+.|.+...++.-.
T Consensus 270 itRT~~v-~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~ 329 (438)
T PRK10879 270 ITRTFPV-NGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGIL 329 (438)
T ss_pred eEEEEEE-CCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCc
Confidence 4677777 34 57778888888999999999999999999999999888887543
Done!