Query 016319
Match_columns 391
No_of_seqs 153 out of 485
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 3.8E-23 1.3E-27 165.6 8.2 82 294-375 2-86 (86)
2 3zq4_A Ribonuclease J 1, RNAse 98.7 2.1E-08 7.1E-13 103.3 9.1 120 19-146 431-554 (555)
3 3bk2_A RNAse J, metal dependen 98.4 1.6E-07 5.5E-12 96.4 5.8 115 19-146 446-561 (562)
4 1ity_A TRF1; helix-turn-helix, 98.0 1.7E-05 5.7E-10 60.9 7.3 56 289-356 3-59 (69)
5 3sjm_A Telomeric repeat-bindin 97.9 1.3E-05 4.4E-10 61.5 5.9 50 295-356 10-60 (64)
6 1w0t_A Telomeric repeat bindin 97.8 3.9E-05 1.3E-09 56.0 6.3 49 296-356 2-51 (53)
7 2din_A Cell division cycle 5-l 97.5 0.00046 1.6E-08 52.3 8.5 51 295-360 8-58 (66)
8 2d9a_A B-MYB, MYB-related prot 97.4 0.00017 5.8E-09 53.6 5.3 50 293-355 5-54 (60)
9 1guu_A C-MYB, MYB proto-oncoge 97.4 0.0002 7E-09 51.7 5.2 48 295-355 2-49 (52)
10 1x41_A Transcriptional adaptor 97.3 0.00031 1.1E-08 52.6 5.7 50 293-355 5-54 (60)
11 2llk_A Cyclin-D-binding MYB-li 97.3 0.00023 7.9E-09 56.3 4.9 47 295-356 22-68 (73)
12 2juh_A Telomere binding protei 97.3 0.002 6.8E-08 55.6 10.6 59 290-357 11-69 (121)
13 2roh_A RTBP1, telomere binding 97.2 0.0011 3.9E-08 57.1 8.3 59 290-357 25-83 (122)
14 2dim_A Cell division cycle 5-l 97.2 0.00055 1.9E-08 52.4 5.6 50 293-355 6-55 (70)
15 2cqr_A RSGI RUH-043, DNAJ homo 97.2 0.001 3.5E-08 52.5 7.0 52 295-356 17-68 (73)
16 2elk_A SPCC24B10.08C protein; 97.1 0.0013 4.3E-08 49.1 7.0 47 296-354 9-55 (58)
17 1gvd_A MYB proto-oncogene prot 97.1 0.00052 1.8E-08 49.6 4.7 47 295-354 2-48 (52)
18 2cu7_A KIAA1915 protein; nucle 97.1 0.0014 4.6E-08 50.6 7.1 50 294-357 7-56 (72)
19 2yum_A ZZZ3 protein, zinc fing 97.1 0.0015 5E-08 50.6 7.0 53 295-355 7-59 (75)
20 2cqq_A RSGI RUH-037, DNAJ homo 97.0 0.0026 8.8E-08 50.0 7.9 52 295-357 7-58 (72)
21 2yus_A SWI/SNF-related matrix- 97.0 0.00075 2.6E-08 53.7 4.8 47 294-354 16-62 (79)
22 2cjj_A Radialis; plant develop 97.0 0.0023 7.9E-08 52.6 7.7 60 296-365 8-67 (93)
23 2aje_A Telomere repeat-binding 96.7 0.0018 6E-08 54.6 5.0 57 291-357 8-65 (105)
24 3osg_A MYB21; transcription-DN 96.5 0.0035 1.2E-07 52.9 5.9 48 294-355 9-56 (126)
25 3osg_A MYB21; transcription-DN 96.5 0.0029 1E-07 53.4 5.3 49 296-358 62-110 (126)
26 2k9n_A MYB24; R2R3 domain, DNA 96.5 0.0054 1.9E-07 50.3 6.6 50 295-358 52-101 (107)
27 2ckx_A NGTRF1, telomere bindin 96.4 0.006 2E-07 49.2 6.4 51 298-357 2-52 (83)
28 1gv2_A C-MYB, MYB proto-oncoge 96.2 0.0035 1.2E-07 50.9 3.8 49 295-357 55-103 (105)
29 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0075 2.6E-07 49.4 5.6 45 297-354 2-46 (107)
30 2ltp_A Nuclear receptor corepr 95.1 0.0009 3.1E-08 54.0 0.0 53 292-358 12-64 (89)
31 1gv2_A C-MYB, MYB proto-oncoge 95.9 0.0054 1.9E-07 49.7 3.8 47 295-354 3-49 (105)
32 1x58_A Hypothetical protein 49 95.6 0.02 6.7E-07 44.4 5.6 51 294-356 6-57 (62)
33 1h8a_C AMV V-MYB, MYB transfor 95.5 0.011 3.8E-07 49.6 4.2 47 295-354 26-72 (128)
34 1h8a_C AMV V-MYB, MYB transfor 95.3 0.0081 2.8E-07 50.5 2.8 48 295-356 78-125 (128)
35 3zqc_A MYB3; transcription-DNA 94.9 0.012 4.1E-07 49.8 2.7 48 296-357 54-101 (131)
36 1h89_C C-MYB, MYB proto-oncoge 94.4 0.041 1.4E-06 47.7 4.9 48 295-355 57-104 (159)
37 1h89_C C-MYB, MYB proto-oncoge 94.2 0.022 7.6E-07 49.4 2.7 48 295-356 109-156 (159)
38 3zqc_A MYB3; transcription-DNA 94.2 0.018 6.2E-07 48.7 2.0 46 297-355 3-48 (131)
39 1wgx_A KIAA1903 protein; MYB D 93.9 0.072 2.5E-06 42.2 4.9 53 295-357 7-59 (73)
40 1ign_A Protein (RAP1); RAP1,ye 92.9 0.071 2.4E-06 50.9 4.0 53 295-356 7-60 (246)
41 3hm5_A DNA methyltransferase 1 91.4 0.32 1.1E-05 40.2 5.7 57 297-363 31-88 (93)
42 2eqr_A N-COR1, N-COR, nuclear 90.8 0.43 1.5E-05 35.6 5.4 46 293-352 9-54 (61)
43 1ug2_A 2610100B20RIK gene prod 88.8 1.5 5.1E-05 36.5 7.6 61 292-363 29-89 (95)
44 2iw5_B Protein corest, REST co 87.9 0.37 1.3E-05 45.7 3.9 49 295-357 132-180 (235)
45 2lr8_A CAsp8-associated protei 86.2 0.14 4.9E-06 40.5 0.0 60 291-362 9-68 (70)
46 1fex_A TRF2-interacting telome 81.6 1.3 4.4E-05 33.3 3.6 53 296-353 2-55 (59)
47 4iej_A DNA methyltransferase 1 74.8 5.5 0.00019 32.9 5.7 57 297-363 31-88 (93)
48 1id0_A PHOQ histidine kinase; 62.1 5.3 0.00018 31.8 3.1 80 87-183 38-125 (152)
49 2xag_B REST corepressor 1; ami 61.4 5.4 0.00019 41.3 3.7 43 295-351 379-421 (482)
50 3a0y_A Sensor protein; ATP-LID 42.0 19 0.00067 28.2 3.3 83 86-183 40-129 (152)
51 3sl2_A Sensor histidine kinase 40.4 15 0.00052 30.2 2.6 84 86-183 36-132 (177)
52 2yqk_A Arginine-glutamic acid 40.1 34 0.0012 25.5 4.2 41 295-348 8-48 (63)
53 1ysr_A Sensor-type histidine k 40.1 11 0.00038 30.0 1.6 82 86-183 39-129 (150)
54 3no7_A PARB, putative plasmid 39.3 29 0.001 28.0 3.9 39 100-138 25-64 (80)
55 2c9l_Y EB1, zebra, BZLF1 trans 35.6 27 0.00091 26.7 2.9 19 344-362 13-31 (63)
56 1irz_A ARR10-B; helix-turn-hel 35.1 1.2E+02 0.0041 23.2 6.6 49 295-352 6-54 (64)
57 4eef_G F-HB80.4, designed hema 33.7 2.7 9.3E-05 33.5 -2.9 46 295-350 19-64 (74)
58 3d36_A Sporulation kinase B; G 33.0 37 0.0013 28.7 3.9 83 85-183 115-205 (244)
59 1wlx_A Alpha-actinin 4; three- 32.9 95 0.0033 26.8 6.4 58 300-357 43-113 (129)
60 1bxd_A ENVZ(290-450), protein 32.8 19 0.00064 29.1 1.9 81 86-183 40-130 (161)
61 2c2a_A Sensor histidine kinase 31.8 13 0.00044 32.5 0.7 85 87-183 132-228 (258)
62 4ew8_A Sensor protein DIVL; si 26.3 52 0.0018 28.4 3.7 82 87-183 149-236 (268)
63 2crg_A Metastasis associated p 23.9 57 0.002 24.8 3.1 43 293-349 5-48 (70)
64 3jz3_A Sensor protein QSEC; he 23.0 85 0.0029 26.0 4.3 79 86-183 110-197 (222)
65 1qxy_A Methionyl aminopeptidas 22.6 1.6E+02 0.0054 26.2 6.3 67 50-128 84-156 (252)
66 1o0x_A Methionine aminopeptida 22.2 1.6E+02 0.0055 26.6 6.3 67 50-128 98-169 (262)
67 2gg2_A Methionine aminopeptida 22.1 1.5E+02 0.0052 26.6 6.1 68 49-128 86-158 (263)
68 3mx6_A Methionine aminopeptida 20.7 1.8E+02 0.0061 26.2 6.3 68 49-128 88-160 (262)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.88 E-value=3.8e-23 Score=165.62 Aligned_cols=82 Identities=30% Similarity=0.765 Sum_probs=76.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc---CCCCCCC
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS---GNSQKSW 370 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd---G~~rksW 370 (391)
.|..+|+++||++||++|++++.+|..++++..+|++||..|.++||+||+.||+.||+||++.|+++|+ ..++.+|
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~~ 81 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAKM 81 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 4789999999999999999999999988899999999999999999999999999999999999999998 3345699
Q ss_pred cChHH
Q 016319 371 PYFEE 375 (391)
Q Consensus 371 pYFde 375 (391)
|||++
T Consensus 82 ~yf~e 86 (86)
T 2ebi_A 82 SYYKE 86 (86)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99975
No 2
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=98.73 E-value=2.1e-08 Score=103.33 Aligned_cols=120 Identities=16% Similarity=0.361 Sum_probs=107.7
Q ss_pred hcchhhhhhhccCCCcccccccccchhhhhccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeee--cCcchHH
Q 016319 19 SLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWL--DKGKLLD 96 (391)
Q Consensus 19 ~lG~~~l~~~yndG~k~~Gt~~dl~i~eR~~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~--D~GkL~~ 96 (391)
..|+...-..|-||. +.|...+..|.||.++|.+|||+|.+-|=+.. ..+-+...|+|||++. +...|++
T Consensus 431 ~~~~v~~g~~~vdg~-~~~~~~~~vl~~R~~l~~~G~~~v~~~~~~~~-------~~~~~~p~i~~~g~~~~~~~~~~~~ 502 (555)
T 3zq4_A 431 VAGKIPSGSVYIDGS-GIGDIGNIVLRDRRILSEEGLVIVVVSIDMDD-------FKISAGPDLISRGFVYMRESGDLIN 502 (555)
T ss_dssp ECCCCCCCEEEEETT-EETCCCHHHHHHHHHHHHHCEEEEEEEECSSS-------CCEEEEEEEEEESSSCHHHHTTHHH
T ss_pred EecEEeeCCEEEcCC-CcccccchHHHHHHHHHhCCeEEEEEEEECCC-------CeEcCCceEEEecccccCCcHHHHH
Confidence 457778889999986 78999999999999999999999999887664 6788999999999995 4578999
Q ss_pred HHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEecc
Q 016319 97 ALHKAAHAALSSCPV--NCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAME 146 (391)
Q Consensus 97 ~l~kaa~~al~~~~~--~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e 146 (391)
.+.+++.++|.+|.. ......+++.|.++|++.+++.-+|||-|+.+.+|
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~P~i~~~i~~ 554 (555)
T 3zq4_A 503 DAQELISNHLQKVMERKTTQWSEIKNEITDTLAPFLYEKTKRRPMILPIIME 554 (555)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEEEe
Confidence 999999999999964 46788999999999999999999999999999875
No 3
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=98.43 E-value=1.6e-07 Score=96.39 Aligned_cols=115 Identities=21% Similarity=0.373 Sum_probs=101.6
Q ss_pred hcchhhhhhhccCCCcccccccccchhhhhccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecCcchHHHH
Q 016319 19 SLGKENLQLMYSDGDKAFGTSTELCVDERLRIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDKGKLLDAL 98 (391)
Q Consensus 19 ~lG~~~l~~~yndG~k~~Gt~~dl~i~eR~~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~GkL~~~l 98 (391)
..|+...-..|-||. +.|...+.-|.||.++|.+|||+|.+-|-+.. ...|.|||+..++..|++.+
T Consensus 446 ~~~~~~~g~~~vdg~-~~~~~~~~vl~dr~~l~~~G~~~v~~~~~~~~------------~p~~~~~g~~~~~~~~~~~~ 512 (562)
T 3bk2_A 446 KVGEVPHGVLYVDGL-GVGDITEEILADRRHMAEEGLVVITALAGEDP------------VVEVVSRGFVKAGERLLGEV 512 (562)
T ss_dssp EEEECCCCEEEEETT-EEEEECHHHHHHHHHHHHHCEEEEEEEESSSC------------EEEEEEESCCHHHHTSHHHH
T ss_pred EecEEeeCCEEECCC-CcccCcchHHHHHHHHHhCCEEEEEEEEeCCC------------CceEEEEccccchHHHHHHH
Confidence 357777788999985 46999999999999999999999988876552 78999999998889999999
Q ss_pred HHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEecc
Q 016319 99 HKAAHAALSSCP-VNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAME 146 (391)
Q Consensus 99 ~kaa~~al~~~~-~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e 146 (391)
.+++.++|.+|. .......+++.|.++|++.+++.-+|||-|+.+.+|
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~i~~ 561 (562)
T 3bk2_A 513 RRMALEALKNGVREKKPLERIRDDIYYPVKKFLKKATGRDPMILPVVIE 561 (562)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEEEe
Confidence 999999998875 235788999999999999999999999999999876
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.99 E-value=1.7e-05 Score=60.90 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=44.6
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 016319 289 KPSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 289 K~sK~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk 356 (391)
++.++.....||.+|-..|+++...+ . ..-|..||..| ++ .||+.||+.+|.++.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~----G-----~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKY----G-----EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHH----C-----SSCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH----C-----CCcHHHHHHHc---CcCCCCHHHHHHHHHHHcC
Confidence 34445578899999999999988653 1 12599999987 45 7999999999999875
No 5
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.95 E-value=1.3e-05 Score=61.49 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk 356 (391)
++..||.+|-..|+++...+ .. .-|..||..+ ++ .||+.||++||.||++
T Consensus 10 kk~~WT~eED~~L~~~V~~~----G~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKY----GE-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----CT-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc----CC-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 56789999999999987653 21 2499999764 34 6999999999999975
No 6
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.81 E-value=3.9e-05 Score=56.04 Aligned_cols=49 Identities=33% Similarity=0.499 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk 356 (391)
+..||.+|...|+++...+ . ..-|..||..| ++ .||+.||+++|.|+.+
T Consensus 2 r~~WT~eEd~~L~~~v~~~----G-----~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY----G-----EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH----C-----TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH----C-----cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 4689999999999988653 1 12599999987 45 5999999999999875
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.00046 Score=52.30 Aligned_cols=51 Identities=29% Similarity=0.662 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEE 360 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKK 360 (391)
....||.+|-..|+++... +. .-|..||. |. | ||+.||+++|.++...-.+
T Consensus 8 ~k~~WT~eED~~L~~~~~~----~g------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKL----MP------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHH----CT------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----cC------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 4568999999999998543 21 26999999 64 4 9999999999999875433
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.45 E-value=0.00017 Score=53.63 Aligned_cols=50 Identities=32% Similarity=0.630 Sum_probs=39.8
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
......||.+|-..|+++...+ . ..-|..||..|. .||+.||+.+|.++.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~----G-----~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQF----G-----QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHT----C-----TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHh----C-----CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 3457799999999999988652 1 125999999974 599999999998753
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.41 E-value=0.0002 Score=51.67 Aligned_cols=48 Identities=38% Similarity=0.678 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
+...||.+|-..|+++...+ . ..-|..||..|. .||+.||+.+|.++.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~----G-----~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQN----G-----TDDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHH----C-----SSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh----C-----CCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 35689999999999998663 1 125999999874 599999999999864
No 10
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.35 E-value=0.00031 Score=52.59 Aligned_cols=50 Identities=12% Similarity=0.453 Sum_probs=39.6
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
...+..||.+|-..||++... |. ..-|..||..|. .||+.||+.+|.+..
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~----~G-----~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMD----CG-----FGNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHH----TC-----TTCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH----HC-----cCcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 345778999999999998754 22 135999999994 499999999998753
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.32 E-value=0.00023 Score=56.27 Aligned_cols=47 Identities=30% Similarity=0.483 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
....||.+|-..||++...+ . +. |..||..| .||+.||+++|..|++
T Consensus 22 ~k~~wT~EED~~L~~l~~~~----G----~k--W~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKH----G----ND--WATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHH----S----SC--HHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHH----C----CC--HHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 56789999999999998652 1 22 99999998 5999999999998865
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.27 E-value=0.002 Score=55.56 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=45.5
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 290 PSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 290 ~sK~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
..++..+..||.+|...|++....+ .. .-|..|+..+...--.||..||++||.||.+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~----G~-----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHH----GG-----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHH----CC-----CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3445678899999999999988653 21 26999998864311379999999999999975
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.20 E-value=0.0011 Score=57.15 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=44.9
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 290 PSKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 290 ~sK~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
..++..+..||.+|...|++....+ .. .-|..|+..+...=-.||+.||++||.||.+.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHL----GT-----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHH----SS-----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHH----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3445678899999999999988653 21 25999998654211279999999999999974
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00055 Score=52.40 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=40.0
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
..++..||.+|-..|+++...+ . ..-|..||..|. .||+.||+.+|.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~----G-----~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKY----G-----KNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHT----C-----SSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----C-----cCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 3467799999999999988652 1 135999999985 699999999998743
No 15
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.15 E-value=0.001 Score=52.49 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
....||.+|-++|+++... |. .....-|..||..|- .||+.||+.+|++|..
T Consensus 17 ~~~~WT~eEd~~L~~al~~----~g--~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQ----YP--RGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHH----SC--SSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHH----cC--CCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 4678999999999988754 22 123467999998874 5999999999999864
No 16
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.13 E-value=0.0013 Score=49.11 Aligned_cols=47 Identities=21% Similarity=0.469 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
...||.+|-..|+++...+ . ..-|..||..|. -.||+.||+.+|.+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~----G-----~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL----G-----LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT----T-----TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----C-----cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 4579999999999987552 1 135999999883 369999999999875
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.12 E-value=0.00052 Score=49.59 Aligned_cols=47 Identities=32% Similarity=0.661 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
....||.+|-..|+++...+ . ..-|..||..|. .||+.||+.+|.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~----G-----~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKY----G-----PKRWSVIAKHLK----GRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHH----C-----TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH----C-----cChHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 35689999999999988653 1 124999999873 69999999999875
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.10 E-value=0.0014 Score=50.65 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=40.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
.....||.+|-..||++...+ . .-|..||..|. .||+.||+++|.++.+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~----G------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKF----G------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT----C------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH----C------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 357799999999999988652 1 16999999874 49999999999988654
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.0015 Score=50.57 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
....||.+|-..|+++... |........-|..||..|. .||+.||+.+|.+..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 4668999999999998754 3221122367999999984 499999999996443
No 20
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.00 E-value=0.0026 Score=50.01 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
....||.+|-++|..+... |... ...-|+.||+.| | ||+.||+.+|+.|+..
T Consensus 7 ~~~~WT~eE~k~fe~al~~----~p~~--t~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVK----FPGG--TPGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHH----CCCC--CCcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3568999999999988753 4321 135699999997 4 9999999999999876
No 21
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.98 E-value=0.00075 Score=53.75 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=38.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
.....||.+|..+||++... |. .-|..||..|. .||+.||+.+|.+|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~----~G------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEM----YK------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHH----SS------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHH----hC------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 35678999999999998654 22 35999999884 59999999999866
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.96 E-value=0.0023 Score=52.65 Aligned_cols=60 Identities=18% Similarity=0.409 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcCC
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKSGN 365 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKdG~ 365 (391)
...||.+|-++|+++... |.. ....-|+.||..|. .||+.||+.+|++|...-+.++.|.
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~--~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg~ 67 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESGK 67 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHH----cCC--CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 568999999999988654 321 12467999999984 4999999999999998866666554
No 23
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.68 E-value=0.0018 Score=54.57 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=42.6
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHH
Q 016319 291 SKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEG-FNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 291 sK~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~G-y~RTaeQCr~KWKNLKk~ 357 (391)
.++..+..||.+|...|++....+ .. .-|..|+..+.. - -.||..||++||.||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL----GT-----GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH----CS-----SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHhh
Confidence 345578899999999999987652 21 259999875421 1 279999999999999973
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.53 E-value=0.0035 Score=52.92 Aligned_cols=48 Identities=31% Similarity=0.669 Sum_probs=39.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
.+...||.+|-..|+++...+ . .-|..||..|. .||+.||+.+|.+..
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~----G------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH----G------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH----T------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh----C------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 367789999999999998764 1 14999998874 699999999999754
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.52 E-value=0.0029 Score=53.39 Aligned_cols=49 Identities=27% Similarity=0.492 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKY 358 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~Y 358 (391)
...||.+|-..|++++.++- .-|..||..|. .||..||+++|.+|.++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 45799999999999987641 13999998663 699999999999998763
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.48 E-value=0.0054 Score=50.26 Aligned_cols=50 Identities=30% Similarity=0.572 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKY 358 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~Y 358 (391)
....||.+|-..|+++...+ . .-|..||..|. .||+.||+++|.+|.+.-
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~----G------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEY----G------PKWNKISKFLK----NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHT----C------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHh----C------cCHHHHHHHCC----CCCHHHHHHHHHHHHhhH
Confidence 35689999999999988653 1 24999999873 699999999999998763
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.44 E-value=0.006 Score=49.18 Aligned_cols=51 Identities=20% Similarity=0.437 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 298 KWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 298 ~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
.||.+|...|++....+ .. .-|..|+..-...=-.||+.||++||.||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~-----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC-----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999987653 21 25999988521100279999999999999874
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.18 E-value=0.0035 Score=50.86 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
....||.+|-..|+++...+ . .-|..||..|. .||+.||+++|.+|.+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~----G------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRL----G------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----S------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHh----C------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 45689999999999998664 1 24999997652 59999999999988653
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.15 E-value=0.0075 Score=49.42 Aligned_cols=45 Identities=31% Similarity=0.547 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
..||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHH
Confidence 4799999999999986531 135999999884 69999999999874
No 30
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.12 E-value=0.0009 Score=54.04 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=42.9
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 016319 292 KGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKY 358 (391)
Q Consensus 292 K~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~Y 358 (391)
.......||.+|-..||++...+ .+ -|..||..|. .||+.||++.|.++.+.+
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~--------G~--~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEH--------GR--NWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34567799999999999988663 11 3999999874 599999999999887764
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.94 E-value=0.0054 Score=49.73 Aligned_cols=47 Identities=30% Similarity=0.643 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
....||.+|...|+++...+- ..-|..||..|. .||+.||+.+|.+.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhC---------CCcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 456899999999999986531 124999998873 69999999999874
No 32
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.63 E-value=0.02 Score=44.39 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 016319 294 VRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 294 ~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk 356 (391)
..+..||.+|+..||+....+ . .-|..|+..-.- + .||....++||++|.+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~----G------~~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTM----G------NHWNSILWSFPF--QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHH----C------SCHHHHHHHSCC--CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHH----h------HhHHHHHHhCCC--ccCcccchHHHHHHHHHh
Confidence 367899999999999988664 1 159999865321 3 7999999999999986
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.51 E-value=0.011 Score=49.65 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSL 354 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNL 354 (391)
....||.+|...|+++...+ .. .-|..||..|. .||+.||+.+|.+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~----g~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKY----GP-----KRWSDIAKHLK----GRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHT----CS-----CCHHHHHHHSS----SCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH----CC-----CCHHHHHHHhc----CCcHHHHHHHHHHh
Confidence 45689999999999987652 11 24999999874 69999999999874
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.33 E-value=0.0081 Score=50.50 Aligned_cols=48 Identities=27% Similarity=0.590 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
....||.+|-..|+++...+- .-|..||..|. .||+.||+++|.+|.+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 456899999999999987641 24999998752 5999999999998764
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.93 E-value=0.012 Score=49.84 Aligned_cols=48 Identities=29% Similarity=0.608 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
...||.+|-..|++++..+ . .-|..||..|. .||..||+++|.++.+.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~----G------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKL----G------SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHS----C------SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHH----C------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 4579999999999987552 1 13999998763 69999999999987653
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.42 E-value=0.041 Score=47.73 Aligned_cols=48 Identities=31% Similarity=0.664 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
....||.+|-..|+++...+ .. .-|..||..|. .||+.||+.+|.+..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~----g~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKY----GP-----KRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHH----CS-----CCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHh----Cc-----ccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 45789999999999988653 11 24999998874 599999999998743
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.20 E-value=0.022 Score=49.41 Aligned_cols=48 Identities=27% Similarity=0.583 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
....||.+|-..|++++..+- .-|..||..|. .||..||+++|+.|.+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 467899999999999986641 24999998652 5999999999998764
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.16 E-value=0.018 Score=48.72 Aligned_cols=46 Identities=28% Similarity=0.531 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLL 355 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLK 355 (391)
..||.+|-..|+++...+ . ..-|..||..|. .||+.||+.+|.+..
T Consensus 3 g~Wt~eED~~L~~~v~~~----g-----~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKEN----G-----PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHH----C-----SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh----C-----cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 469999999999987653 1 124999998773 599999999998743
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.95 E-value=0.072 Score=42.24 Aligned_cols=53 Identities=19% Similarity=0.520 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
....||.+|.++|...... |. .....-|+.||+.+- .||+++|+.+++.|.+.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~----~~--~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFAS----LP--KHKPGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHH----SC--SSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHH----CC--CCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 3568999999999887653 22 123468999998874 29999999887777443
No 40
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=92.94 E-value=0.071 Score=50.92 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccch-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRM-ALWKEISTHLANEGFNRTPSQCKSRWSSLLQ 356 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~-~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk 356 (391)
....||.+|-..||++... +. ..++. ..|.+||..|. .||+.||+++|.++.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k----~G-n~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRK----NP-TRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHT----SG-GGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCCCHHHHHHHHHHHHH----hC-cCccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 4669999999999998755 21 12333 45999998765 5999999999998553
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=91.38 E-value=0.32 Score=40.16 Aligned_cols=57 Identities=16% Similarity=0.389 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhhc
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGF-NRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy-~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
..||.+||..|+++..++.-+ |-.|+.++.-.++ .||.++.+.++-.+.+...+.+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----------W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999775544 5677788765554 79999999999999998877663
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.76 E-value=0.43 Score=35.63 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWS 352 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWK 352 (391)
+.....||++|-..|++.+..+ ..-|..||..|. .||..||...|-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy 54 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYY 54 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHH
Confidence 3467899999999998887552 235999997764 599999987654
No 43
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=88.77 E-value=1.5 Score=36.48 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=49.7
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Q 016319 292 KGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 292 K~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
+.+.-..||.++-+.+|..+.+ .....+.|..||..|. +|++.|.+++|..|.+-|.+...
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhc
Confidence 3456788999999888877644 3445678999999985 49999999999999999998654
No 44
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.95 E-value=0.37 Score=45.73 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~ 357 (391)
....||++|...|++.... |. + -|..||..|. .||..||++-|-+-+++
T Consensus 132 ~s~~WTeEE~~lFleAl~k----YG---K---DW~~IAk~Vg----TKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRK----YG---R---DFQAISDVIG----NKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHH----HS---S---CHHHHHHHHS----SCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHH----HC---c---CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 5779999999999887654 21 1 2999999873 59999999988766655
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=86.17 E-value=0.14 Score=40.47 Aligned_cols=60 Identities=18% Similarity=0.342 Sum_probs=47.5
Q ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 016319 291 SKGVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWSSLLQKYEESK 362 (391)
Q Consensus 291 sK~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWKNLKk~YKKiK 362 (391)
++.+.-..||.+|-+.+|..+.+ .......|..||..| +||+.|..++|..|.+-|++.|
T Consensus 9 ~~ge~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 9 KKGEIIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 34456778999998888776543 334457899999887 5999999999999999998876
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=81.65 E-value=1.3 Score=33.27 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH-HHHhcCCCCCHHHHHHHHHH
Q 016319 296 RNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEIST-HLANEGFNRTPSQCKSRWSS 353 (391)
Q Consensus 296 ~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~-kL~e~Gy~RTaeQCr~KWKN 353 (391)
+..+|.+|=..|++.-.++.. .........+|+++++ .+ -.+|+.+|+++|.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 578999999999988776432 1123345699999887 33 37899999999974
No 47
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=74.83 E-value=5.5 Score=32.92 Aligned_cols=57 Identities=14% Similarity=0.329 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhc
Q 016319 297 NKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEG-FNRTPSQCKSRWSSLLQKYEESKS 363 (391)
Q Consensus 297 ~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~G-y~RTaeQCr~KWKNLKk~YKKiKd 363 (391)
..||.+||..|+++..+++-+ |--|+.+-.-.+ ..||.++.+.++-.+.+...+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 469999999999999875544 344555543223 379999999998888887777664
No 48
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=62.10 E-value=5.3 Score=31.80 Aligned_cols=80 Identities=9% Similarity=0.165 Sum_probs=53.2
Q ss_pred eeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh------
Q 016319 87 LWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL------ 160 (391)
Q Consensus 87 ~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~------ 160 (391)
++.|...|..+|..+..||+.-++..+.|.. ....+-+.|..++....++++.-.++
T Consensus 38 ~~~d~~~l~~il~nLl~NAi~~~~~~i~i~~-----------------~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~ 100 (152)
T 1id0_A 38 FVGEQNDFVEVMGNVLDNACKYCLEFVEISA-----------------RQTDEHLYIVVEDDGPGIPLSKREVIFDRGQR 100 (152)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHCSSEEEEEE-----------------EECSSCEEEEEEESSSCCCGGGTTGGGSCCCC
T ss_pred EeeCHHHHHHHHHHHHHHHHHhCcCeEEEEE-----------------EecCCEEEEEEEeCCCCcCHHHHHHHhcccee
Confidence 5678888999999999999888776333211 12234455555566666665554443
Q ss_pred --cCCCccccChhhhhhhhccCCcc
Q 016319 161 --SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 --~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
+.....|+|++-.++.++.|...
T Consensus 101 ~~~~~~g~GlGL~i~~~~~~~~gG~ 125 (152)
T 1id0_A 101 VDTLRPGQGVGLAVAREITEQYEGK 125 (152)
T ss_dssp TTCCCTTCCSCHHHHHHHHHHTTCE
T ss_pred ccCCCCCcccCHHHHHHHHHHcCCE
Confidence 22356899999999999988654
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=61.39 E-value=5.4 Score=41.30 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRW 351 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KW 351 (391)
....||++|...|++.... |. .-|..||..+. .||..||+.=+
T Consensus 379 ~~~~WT~eE~~~f~~al~~----yG------kdw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRK----YG------RDFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHH----HT------TCHHHHHHHHS----SCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH----HC------cCHHHHHHHhC----CCCHHHHHHHH
Confidence 5789999999999887654 21 24999998874 58999999854
No 50
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=42.04 E-value=19 Score=28.24 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=49.5
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh-----
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL----- 160 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~----- 160 (391)
.++.|...|..+|..+..||+.-++.+..+. |. -....+-+.+..++....++.+.-.++
T Consensus 40 ~i~~d~~~l~~il~nll~NAi~~~~~~~~I~-i~--------------~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~ 104 (152)
T 3a0y_A 40 RVEADRTRIKQVLINLVQNAIEATGENGKIK-IT--------------SEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF 104 (152)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHCTTCEEE-EE--------------EEECSSEEEEEEEEESCCCCGGGTTGGGSTTC
T ss_pred EEEECHHHHHHHHHHHHHHHHHhcCCCCEEE-EE--------------EEecCCEEEEEEEeCCCCcCHHHHHhHhhhhc
Confidence 3567888888888888888887775443321 10 011234455555555555655543433
Q ss_pred -cCCCccccChhhhhhhhc-cCCcc
Q 016319 161 -SGNSHVGFGMPALRKMVD-RHPKI 183 (391)
Q Consensus 161 -~g~~~~~~g~~~~~~~~~-~~~~~ 183 (391)
+.....|+|+.-.++.+. .|...
T Consensus 105 ~~~~~g~GlGL~i~~~~~~~~~gg~ 129 (152)
T 3a0y_A 105 TTKTQGTGLGLSICRKIIEDEHGGK 129 (152)
T ss_dssp CCC--CCCCSHHHHHHHHHTTTSCE
T ss_pred cCCCCCCCcCHHHHHHHHHHhCCcE
Confidence 122357999999999998 66543
No 51
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=40.36 E-value=15 Score=30.22 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=54.8
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh----
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLA-HVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL---- 160 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~-~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~---- 160 (391)
.++.|...|..+|..+..||+.-++.+..+. .+. -....+-+.|..++....++.+.-.++
T Consensus 36 ~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~--------------~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~ 101 (177)
T 3sl2_A 36 YVEIDQDKITQVLDNIISNALKYSPEGGHVTFSID--------------VNEEEELLYISVKDEGIGIPKKDVEKVFDRF 101 (177)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEE--------------EETTTTEEEEEEECCSSCCCTTTTTTTTSTT
T ss_pred EEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEE--------------EccCCCEEEEEEEECCCCCCHHHHHHHHhhh
Confidence 3667999999999999999999886653321 110 012344556666666666665543332
Q ss_pred --------cCCCccccChhhhhhhhccCCcc
Q 016319 161 --------SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 --------~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
......|+|+.-.++.+..|...
T Consensus 102 ~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~ 132 (177)
T 3sl2_A 102 YRVDKARTRKLGGTGLGLAIAKEMVQAHGGD 132 (177)
T ss_dssp CCCC------CCCCCCHHHHHHHHHHHTTCC
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHcCCE
Confidence 22336799999999999887654
No 52
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.13 E-value=34 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCK 348 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr 348 (391)
....||++|...+.+.... | .+ -|..|+..+- -.+|..||.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~----y---GK---df~~I~~~~v---~~Kt~~~~v 48 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQ----Y---GK---NFFRIRKELL---PNKETGELI 48 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHH----T---CS---CHHHHHHHSC---TTSCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH----h---Cc---cHHHHHHHHc---CCCcHHHHH
Confidence 4689999999877765533 1 11 3888987531 159999994
No 53
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=40.09 E-value=11 Score=30.01 Aligned_cols=82 Identities=11% Similarity=0.121 Sum_probs=48.3
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh-----
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL----- 160 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~----- 160 (391)
.++.|...|..+|..+..||+.-++.+ .+ .|. + ....+-+.|..++....++.+.-.++
T Consensus 39 ~~~~d~~~l~~il~nLl~NA~~~~~~~-~I-~i~----------~----~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~ 102 (150)
T 1ysr_A 39 IIVGLPAGLRLAVDNAIANAVKHGGAT-LV-QLS----------A----VSSRAGVEIAIDDNGSGVPEGERQVVFERFS 102 (150)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCS-EE-EEE----------E----EEETTEEEEEEEESSSCCCGGGHHHHHTSCC
T ss_pred eEecCHHHHHHHHHHHHHHHHhcCCCc-EE-EEE----------E----EecCCEEEEEEEECCCCCCHHHHHHHhcccc
Confidence 367788888888888888888876544 11 110 0 11233355555666666665544332
Q ss_pred ----cCCCccccChhhhhhhhccCCcc
Q 016319 161 ----SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 ----~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
+.....|+|++-.+++++.|...
T Consensus 103 ~~~~~~~~g~GlGL~i~~~~~~~~gG~ 129 (150)
T 1ysr_A 103 RGSTASHSGSGLGLALVAQQAQLHGGT 129 (150)
T ss_dssp -----------CCCHHHHHHHHHTTCE
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHcCCE
Confidence 23346799999999999988653
No 54
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=39.25 E-value=29 Score=28.01 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHHHhhCCCC
Q 016319 100 KAAHAALSSCPVNCPLAH-VEKTVSEVLRKVVRKYSSKRP 138 (391)
Q Consensus 100 kaa~~al~~~~~~~~l~~-~Er~v~~~lr~~~~ky~~krP 138 (391)
+||+.+......+.+|++ +|+.|...+++.-+|||+=+|
T Consensus 25 RaA~lat~~~eg~~slS~Fi~aAv~~ev~rlE~kyN~G~p 64 (80)
T 3no7_A 25 RTAYTLTHLQEGHRTFSGFIAAALDAEVQRLEQRYNEGRR 64 (80)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 566777777789999987 799999999999999999776
No 55
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=35.58 E-value=27 Score=26.66 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 016319 344 PSQCKSRWSSLLQKYEESK 362 (391)
Q Consensus 344 aeQCr~KWKNLKk~YKKiK 362 (391)
...|+.||+||.+.|+.+-
T Consensus 13 srk~rakfkn~lqh~r~va 31 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVA 31 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999983
No 56
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=35.15 E-value=1.2e+02 Score=23.23 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSRWS 352 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~KWK 352 (391)
.+..||++.-..++++...+- ...+.+..|.+.|...| .|..|+++-+-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHLQ 54 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHLQ 54 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence 578999999999988876531 34577888888876544 68888877654
No 57
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=33.69 E-value=2.7 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016319 295 RRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLANEGFNRTPSQCKSR 350 (391)
Q Consensus 295 R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e~Gy~RTaeQCr~K 350 (391)
....||.+|-++|-.+... |. +....-|+.||+.+- .||+.+|+..
T Consensus 19 ss~~WT~eE~K~FE~ALa~----yp--~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSF----TN--KDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp ---CCCTTHHHHHHHHTSS----SC--SSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHH----CC--CCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 3567999999887665432 21 223567999998764 3999999753
No 58
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=33.04 E-value=37 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=56.1
Q ss_pred eeeeecCcchHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhhc--
Q 016319 85 RCLWLDKGKLLDALHKAAHAALSSCPVNCPLA-HVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLS-- 161 (391)
Q Consensus 85 r~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~-~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~~-- 161 (391)
-.++.|...|..+|..+..||+.-++.+..+. .++ ...+-+.|..++...+++.+.-.++-
T Consensus 115 ~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~----------------~~~~~~~i~i~D~G~gi~~~~~~~if~~ 178 (244)
T 3d36_A 115 FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVS----------------IDNGRVLIRIADTGVGMTKEQLERLGEP 178 (244)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEE----------------EETTEEEEEEEECSSCCCHHHHHHTTST
T ss_pred ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEE----------------EeCCEEEEEEEecCCCCCHHHHHHHhcc
Confidence 45778999999999999999998886543321 110 12345556666666666666544431
Q ss_pred -----CCCccccChhhhhhhhccCCcc
Q 016319 162 -----GNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 162 -----g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
+....|+|.+-.++++..|...
T Consensus 179 ~~~~~~~~g~GlGL~i~~~i~~~~gG~ 205 (244)
T 3d36_A 179 YFTTKGVKGTGLGMMVVYRIIESMNGT 205 (244)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHTTCE
T ss_pred cccCCCCCCcchhHHHHHHHHHHcCCE
Confidence 1245799999999999988654
No 59
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=32.93 E-value=95 Score=26.75 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHh----cC--------C-CCCHHHHHHHHHHHHHH
Q 016319 300 RPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTHLAN----EG--------F-NRTPSQCKSRWSSLLQK 357 (391)
Q Consensus 300 T~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~kL~e----~G--------y-~RTaeQCr~KWKNLKk~ 357 (391)
|-+|+..|+.....+...+........--..|+..|.+ .| | ..|......||++|.+-
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 57899999988877777665443333333334444443 44 4 35789999999999875
No 60
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=32.83 E-value=19 Score=29.08 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=52.0
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh-----
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL----- 160 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~----- 160 (391)
.++.|...|..+|..+..||+.-+...+.|.. ....+-+.|..++....++++.-.++
T Consensus 40 ~v~~d~~~l~~il~nll~NAik~~~~~I~i~~-----------------~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~ 102 (161)
T 1bxd_A 40 EVKMHPLSIKRAVANMVVNAARYGNGWIKVSS-----------------GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFV 102 (161)
T ss_dssp CEEECHHHHHHHHHHHHHHHHTTCCSCEEEEE-----------------EEETTEEEEEEEEESSCSCTTGGGCSSCCCC
T ss_pred eEEECHHHHHHHHHHHHHHHHhhcCCeEEEEE-----------------EEcCCEEEEEEEeCCCCCCHHHHHHhCCCce
Confidence 47789999999999999999887733333311 01233444555555555555543333
Q ss_pred -----cCCCccccChhhhhhhhccCCcc
Q 016319 161 -----SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 -----~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
.+....|+|++-.++++..|...
T Consensus 103 ~~~~~~~~~g~GlGL~i~~~~~~~~gG~ 130 (161)
T 1bxd_A 103 RGDSARTISGTGLGLAIVQRIVDNHNGM 130 (161)
T ss_dssp CCSCCCCCCCCSCCCCTTHHHHHHHTSE
T ss_pred eCCCCCCCCCcccCHHHHHHHHHHcCCE
Confidence 12246799999999999877643
No 61
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=31.84 E-value=13 Score=32.49 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=52.0
Q ss_pred eeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhhc-----
Q 016319 87 LWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARLS----- 161 (391)
Q Consensus 87 ~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~~----- 161 (391)
++.|..+|..+|.....||+.-++.+.+-..+.-. -....+-+.|..++...+++++.-.++-
T Consensus 132 ~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~------------~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 199 (258)
T 2c2a_A 132 AYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVI------------LDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYR 199 (258)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEE------------EEEETTEEEEEEEECSSCCCGGGTTGGGSTTCC
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEE------------EecCCCeEEEEEEecCCCCCHHHHHhhcccccc
Confidence 56788999999999999998877655321111000 0112233445555666666666554441
Q ss_pred -------CCCccccChhhhhhhhccCCcc
Q 016319 162 -------GNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 162 -------g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
+....|+|.+-.+++++.|...
T Consensus 200 ~~~~~~~~~~G~GLGL~i~~~iv~~~gG~ 228 (258)
T 2c2a_A 200 VDSSLTYEVPGTGLGLAITKEIVELHGGR 228 (258)
T ss_dssp CC---------CCCTHHHHHHHHHHTTCE
T ss_pred CCCCCCCCCCCcchHHHHHHHHHHHcCCE
Confidence 1235799999999999988754
No 62
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=26.30 E-value=52 Score=28.44 Aligned_cols=82 Identities=13% Similarity=0.245 Sum_probs=52.0
Q ss_pred eeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh------
Q 016319 87 LWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL------ 160 (391)
Q Consensus 87 ~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~------ 160 (391)
++.|...|..+|..+..||+.-++.+..+. |. .....+-+.|..++...+++.+.-.++
T Consensus 149 v~~d~~~l~~il~nLl~NA~~~~~~~~~I~-i~--------------~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~ 213 (268)
T 4ew8_A 149 IRGDGKRLAQTLDHLVENALRQTPPGGRVT-LS--------------ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVG 213 (268)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHSCTTCEEE-EE--------------EEECSSEEEEEEEESSCCCCHHHHTTTTSTTCC
T ss_pred EecCHHHHHHHHHHHHHHHHHhCCCCCEEE-EE--------------EEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhc
Confidence 566888888888888888887776543211 10 012234455556666666666654443
Q ss_pred cCCCccccChhhhhhhhccCCcc
Q 016319 161 SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 ~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
......|+|+.-.++.+..|...
T Consensus 214 ~~~~g~GlGL~i~~~~~~~~gG~ 236 (268)
T 4ew8_A 214 RDRGGPGLGLALVKALVELHGGW 236 (268)
T ss_dssp CSSCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCCcccHHHHHHHHHHcCCE
Confidence 23346799999999999988654
No 63
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.91 E-value=57 Score=24.80 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=29.5
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH-HHhcCCCCCHHHHHH
Q 016319 293 GVRRNKWRPEEVKKLIKMRGELHSKFQVVKGRMALWKEISTH-LANEGFNRTPSQCKS 349 (391)
Q Consensus 293 ~~R~~~WT~eETklLIeLw~E~e~rF~~~kRN~~VWEeIA~k-L~e~Gy~RTaeQCr~ 349 (391)
+.....||++|...+.+.... ..+ -|..|+.. |. .+|..||..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~-------yGK---df~~I~~~~v~----~Kt~~~~v~ 48 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEK-------YGK---DFNDIRQDFLP----WKSLTSIIE 48 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHH-------TCS---CHHHHHHTTCS----SSCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHH-------hCc---cHHHHHHHHcC----CCCHHHHHH
Confidence 356789999999777665533 112 28888864 32 589999963
No 64
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=23.03 E-value=85 Score=25.98 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=38.1
Q ss_pred eeeecCcchHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhCCCCcEEEEeccCCcccchhhhhhhh-----
Q 016319 86 CLWLDKGKLLDALHKAAHAALSSCPVNCPLAHVEKTVSEVLRKVVRKYSSKRPEVIAVAMENPAAVLSDELNARL----- 160 (391)
Q Consensus 86 ~~W~D~GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~~lr~~~~ky~~krPevi~~a~e~~~~~~~~~~~~~~----- 160 (391)
.++.|...|..+|..+..||+.-++.+..+. +. + ..+-|.| ++...+++++.-.++
T Consensus 110 ~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~-i~----------~------~~~~i~V--~D~G~Gi~~~~~~~if~~f~ 170 (222)
T 3jz3_A 110 KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVD-VT----------L------NADNFIV--RDNGPGVTPEALARIGERFY 170 (222)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTCCTTCEEE-EE----------E------CSSEEEE--ECSCC---------------
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCeEE-EE----------E------ccCeEEE--EECCCCCCHHHHHHHHhhhc
Confidence 3556777777777777777777765554321 10 0 0011333 344555555543332
Q ss_pred ----cCCCccccChhhhhhhhccCCcc
Q 016319 161 ----SGNSHVGFGMPALRKMVDRHPKI 183 (391)
Q Consensus 161 ----~g~~~~~~g~~~~~~~~~~~~~~ 183 (391)
+.....|+|++-.++++..|...
T Consensus 171 ~~~~~~~~g~GlGL~i~~~i~~~~gG~ 197 (222)
T 3jz3_A 171 RPPGQTATGSGLGLSIVQRIAKLHGMN 197 (222)
T ss_dssp -----------CTHHHHHHHHHHTTCE
T ss_pred cCCCCCCCcccccHHHHHHHHHHcCCE
Confidence 33346799999999999988654
No 65
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=22.62 E-value=1.6e+02 Score=26.18 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=46.0
Q ss_pred cccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecC------cchHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 016319 50 IASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDK------GKLLDALHKAAHAALSSCPVNCPLAHVEKTVS 123 (391)
Q Consensus 50 ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~------GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~ 123 (391)
|.-..+|+|++-..-. +. .==.||.+++.+ =++.+++.+|..+++..|+.+.++..|-+++.
T Consensus 84 l~~gd~v~iD~g~~~~---------gy---~sD~tRT~~vG~~~~~~~~~~~~~~~~a~~~~i~~~kpG~~~~~i~~~~~ 151 (252)
T 1qxy_A 84 IREGDLVNIDVSALKN---------GY---YADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVH 151 (252)
T ss_dssp CCTTCEEEEEEEEEET---------TE---EEEEEEEEECSCCSCTHHHHHHHHHHHHHHHHHTTCCTTCBTHHHHHHHH
T ss_pred cCCCCEEEEEeeEEEC---------CE---EEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 5555677776654322 22 223578888833 13566677788888999999999999988887
Q ss_pred HHHHH
Q 016319 124 EVLRK 128 (391)
Q Consensus 124 ~~lr~ 128 (391)
+.+++
T Consensus 152 ~~~~~ 156 (252)
T 1qxy_A 152 NTARQ 156 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 66
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=22.16 E-value=1.6e+02 Score=26.62 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=47.8
Q ss_pred cccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecC-----cchHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 016319 50 IASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDK-----GKLLDALHKAAHAALSSCPVNCPLAHVEKTVSE 124 (391)
Q Consensus 50 ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~-----GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~~ 124 (391)
|.-..+|+|++-..-. +. .==.||-..+.+ =++.+++.+|..+++..|.++.++..|-+++.+
T Consensus 98 l~~Gd~v~iD~G~~~~---------GY---~sD~tRT~~vG~~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~v~~~~~~ 165 (262)
T 1o0x_A 98 FKEGDIVSVDVGAVYQ---------GL---YGDAAVTYIVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQE 165 (262)
T ss_dssp CCTTCEEEEEEEEEET---------TE---EEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHTCCTTSBHHHHHHHHHH
T ss_pred cCCCCEEEEEEEEEEC---------CE---EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 5556677777655322 22 223588888822 146777788889999999999999999998888
Q ss_pred HHHH
Q 016319 125 VLRK 128 (391)
Q Consensus 125 ~lr~ 128 (391)
.+++
T Consensus 166 ~~~~ 169 (262)
T 1o0x_A 166 TVES 169 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 67
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=22.10 E-value=1.5e+02 Score=26.63 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=47.1
Q ss_pred ccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecC-----cchHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 016319 49 RIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDK-----GKLLDALHKAAHAALSSCPVNCPLAHVEKTVS 123 (391)
Q Consensus 49 ~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~-----GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~ 123 (391)
.|.-..+|++++-..-. +.. ==.||...+.+ =++.++..+|..+++..|..+.++..|-+++.
T Consensus 86 ~l~~gd~v~iD~G~~~~---------gy~---sD~tRT~~vG~~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~v~~~~~ 153 (263)
T 2gg2_A 86 LLKDGDIVNIDVTVIKD---------GFH---GDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQ 153 (263)
T ss_dssp BCCTTCEEEEEEEEEET---------TEE---EEEEEEEECSSCCHHHHHHHHHHHHHHHHHHHHCSTTCBHHHHHHHHH
T ss_pred CcCCCCEEEEEEEEEEC---------CEE---EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35556678777655322 222 23588888821 13677788888999999999999999888777
Q ss_pred HHHHH
Q 016319 124 EVLRK 128 (391)
Q Consensus 124 ~~lr~ 128 (391)
+.+++
T Consensus 154 ~~~~~ 158 (263)
T 2gg2_A 154 KFVEA 158 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 68
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=20.67 E-value=1.8e+02 Score=26.25 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=48.1
Q ss_pred ccccceeEEEEEEeecCCCCCCCCccceeeeEEEeeeeeeecC-----cchHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 016319 49 RIASDGIIVVSMEILRPQHTDGQSGYSLKGKIRITTRCLWLDK-----GKLLDALHKAAHAALSSCPVNCPLAHVEKTVS 123 (391)
Q Consensus 49 ~ia~eGiivv~~ev~r~~~~~~~~~~~l~~k~Rittr~~W~D~-----GkL~~~l~kaa~~al~~~~~~~~l~~~Er~v~ 123 (391)
.|.-..+|+|++-..-. +.. ==.||..++.+ =++.++..+|-.+++..|+.+.++..|-+++.
T Consensus 88 ~l~~Gd~v~iD~G~~~~---------GY~---sD~tRT~~vG~~~~~~~~~~~~v~~a~~~~i~~~kpG~~~~~i~~~~~ 155 (262)
T 3mx6_A 88 PLKNGDIVNIDVTVILD---------GWY---GDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQ 155 (262)
T ss_dssp BCCTTCEEEEEEEEEET---------TEE---EEEEEEEECSSCCHHHHHHHHHHHHHHHHHHHTCSTTCBHHHHHHHHH
T ss_pred ccCCCCEEEEEeeEEEC---------CEE---EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45556678887655322 222 23588888831 24677888888999999999999999988887
Q ss_pred HHHHH
Q 016319 124 EVLRK 128 (391)
Q Consensus 124 ~~lr~ 128 (391)
+.+.+
T Consensus 156 ~~~~~ 160 (262)
T 3mx6_A 156 SYAEK 160 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
Done!