Citrus Sinensis ID: 016320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAT5 | 383 | Protein arginine N-methyl | yes | no | 0.923 | 0.942 | 0.717 | 1e-161 | |
| Q9SNQ2 | 380 | Protein arginine N-methyl | yes | no | 0.920 | 0.947 | 0.686 | 1e-157 | |
| A2Y953 | 382 | Protein arginine N-methyl | N/A | no | 0.920 | 0.942 | 0.686 | 1e-157 | |
| A2XYY8 | 379 | Probable protein arginine | N/A | no | 0.780 | 0.804 | 0.375 | 2e-58 | |
| Q7XKC0 | 391 | Probable protein arginine | no | no | 0.780 | 0.780 | 0.375 | 6e-58 | |
| Q08A71 | 435 | Probable protein arginine | no | no | 0.782 | 0.703 | 0.365 | 5e-57 | |
| Q6NWG4 | 349 | Protein arginine N-methyl | yes | no | 0.785 | 0.879 | 0.382 | 6e-54 | |
| B0JYW5 | 340 | Protein arginine N-methyl | yes | no | 0.777 | 0.894 | 0.371 | 5e-52 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.836 | 0.886 | 0.339 | 7e-51 | |
| Q6VRB0 | 351 | Protein arginine N-methyl | N/A | no | 0.782 | 0.871 | 0.358 | 9e-51 |
| >sp|Q9MAT5|ANM10_ARATH Protein arginine N-methyltransferase PRMT10 OS=Arabidopsis thaliana GN=PRMT10 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9SNQ2|ANM10_ORYSJ Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. japonica GN=PRMT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 247/360 (68%), Positives = 307/360 (85%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A VDKEVDFANYFCTY++LYHQKEML DRVRMDAY +++F+N HHF+GK VLDVGTGSGI
Sbjct: 21 AVVDKEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGI 80
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151
LAIWSAQAGARKVYAVEAT M++HAR L +AN++ D+VEVI+GS+ED+VLPEKVDVIISE
Sbjct: 81 LAIWSAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISE 140
Query: 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW 211
WMGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRS L + K +D E A+ DW
Sbjct: 141 WMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDW 200
Query: 212 YSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTAT 271
F+++T++YYGV+M+VLTK + E +KYYL++++W+NLHP+QVIG AAV+K IDC TAT
Sbjct: 201 NLFVEDTESYYGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTAT 260
Query: 272 VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWG 331
VD+IREVR++ I+ + TRL +GWFDVHFRGS ++PA QE+EL+TAP GTHWG
Sbjct: 261 VDEIREVRAQVTMPIKLDMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWG 320
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QQVFL P ++V+EGD++ VSF+M RSKENHRL+++EF+ E+ ES+G+ LP I K Y+E
Sbjct: 321 QQVFLLTPPLKVNEGDNVKVSFTMVRSKENHRLMDMEFTYELHESSGKQLPAITTKIYLE 380
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Y953|ANM10_ORYSI Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. indica GN=PRMT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 247/360 (68%), Positives = 307/360 (85%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A VDKEVDFANYFCTY++LYHQKEML DRVRMDAY +++F+N HHF+GK VLDVGTGSGI
Sbjct: 23 AVVDKEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGI 82
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151
LAIWSAQAGARKVYAVEAT M++HAR L +AN++ D+VEVI+GS+ED+VLPEKVDVIISE
Sbjct: 83 LAIWSAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISE 142
Query: 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW 211
WMGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRS L + K +D E A+ DW
Sbjct: 143 WMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDW 202
Query: 212 YSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTAT 271
F+++T++YYGV+M+VLTK + E +KYYL++++W+NLHP+QVIG AAV+K IDC TAT
Sbjct: 203 NLFVEDTESYYGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTAT 262
Query: 272 VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWG 331
VD+IREVR++ I+ + TRL +GWFDVHFRGS ++PA QE+EL+TAP GTHWG
Sbjct: 263 VDEIREVRAQVTMPIKLDMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWG 322
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QQVFL P ++V+EGD++ VSF+M RSKENHRL+++EF+ E+ ES+G+ LP I K Y+E
Sbjct: 323 QQVFLLTPPLKVNEGDNVKVSFTMVRSKENHRLMDMEFTYELHESSGKQLPAITTKIYLE 382
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2XYY8|ANM61_ORYSI Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. indica GN=PRMT6.1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 202/354 (57%), Gaps = 49/354 (13%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y+ + + M+ DRVR DAY ++I ++ +GK V+DVG G+GIL+++ A+AGA+
Sbjct: 48 YFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAK 107
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
VYAVEA++M+ AR +VKANNL D V V+ G VED+ + +KVDVIISEWMGY LL ESM
Sbjct: 108 CVYAVEASEMATQAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESM 167
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SV+ ARD+WLKP G++ PSHA +++API + + YEG++D W Y
Sbjct: 168 LPSVLFARDKWLKPGGLILPSHATLFMAPITNS------ERYEGSVDFW-------SDVY 214
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G++MS L P + KK+ + + + V+ VVK+IDC T ++++ + +K+
Sbjct: 215 GINMSALV-PLA---KKFTSEEPSIEIIGGENVLSWPFVVKHIDCYTFKAEELKSITTKY 270
Query: 283 -LSSIRGEGTRLCGFSGWFDVHFRGS------------------------TEDPAQQEIE 317
+SS+ + GF WF+V F G +EDP +
Sbjct: 271 KVSSMM--LAPIHGFGLWFEVEFNGPSNPTDKSPSDLNPLDVIRTKRRRGSEDP----VV 324
Query: 318 LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSC 371
L+TAP THW Q + F + V + + S +++S+EN R L ++ C
Sbjct: 325 LSTAPED-EPTHWHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQLDC 377
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q7XKC0|ANM61_ORYSJ Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. japonica GN=PRMT6.1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 201/354 (56%), Gaps = 49/354 (13%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y+ + + M+ DRVR DAY ++I ++ +GK V+DVG G+GIL+++ A+AGA+
Sbjct: 48 YFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAK 107
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
VYAVEA++M+ AR +VKANNL D V V+ G VED+ + +KVDVIISEWMGY LL ESM
Sbjct: 108 CVYAVEASEMATQAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESM 167
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SV+ ARD+WLKP G++ PSHA +++API + + YEG++D W Y
Sbjct: 168 LPSVLFARDKWLKPGGLILPSHATLFMAPITNS------ERYEGSVDFW-------SDVY 214
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G++MS L P + KK+ + + + V+ VVK+IDC T ++++ +K+
Sbjct: 215 GINMSALV-PLA---KKFTSEEPSIEIIGGENVLSWPFVVKHIDCYTFKAEELKSFTTKY 270
Query: 283 -LSSIRGEGTRLCGFSGWFDVHFRGS------------------------TEDPAQQEIE 317
+SS+ + GF WF+V F G +EDP +
Sbjct: 271 KVSSMM--LAPIHGFGLWFEVEFNGPSNPTDKSPSDLNPLDVIRKKRRRGSEDP----VV 324
Query: 318 LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSC 371
L+TAP THW Q + F + V + + S +++S+EN R L ++ C
Sbjct: 325 LSTAPED-EPTHWHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQLDC 377
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08A71|ANM6_ARATH Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 194/358 (54%), Gaps = 52/358 (14%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA + +EM+ DR R + Y +I Q++ +GK V+DVG G+GIL+I+ AQAGA+
Sbjct: 83 YFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEGKVVVDVGCGTGILSIFCAQAGAK 142
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
+VYAV+A+ ++ A+ +VKAN L D V V+ G VED+ + E+VDVIISEWMGY LL ESM
Sbjct: 143 RVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESM 202
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SVI ARDRWLKP G++ PSHA +++API Y ++D W + Y
Sbjct: 203 LGSVITARDRWLKPGGLILPSHATLYMAPI------SHPDRYSHSIDFW-------RNVY 249
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREV--RS 280
G+DMS + + K+ + ++ + V+ VVK+IDC T + ++ V R
Sbjct: 250 GIDMSAMM----QLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELDSVTARY 305
Query: 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIE----------------------- 317
KF S +R + GF+ WFDV F G PA+ E
Sbjct: 306 KFNSMMRAP---MHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKKRTN 362
Query: 318 ------LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEF 369
L+T+P + THW Q + F + V + + S ++++SKEN R + +
Sbjct: 363 PSDALVLSTSPES-PPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 419
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio GN=prmt6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 192/332 (57%), Gaps = 25/332 (7%)
Query: 34 VDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILA 93
+D+ + YF +Y+ + +EM++D VR + Y IF+N +GK VLDVG G+G+L+
Sbjct: 11 LDRSTEDYMYFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLS 70
Query: 94 IWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153
++ AQAGARKVYAVEA+ ++D A +VK N ++D +EVI+ ++E I L EKVDVI+SEWM
Sbjct: 71 LFCAQAGARKVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWM 130
Query: 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYS 213
GY LL ESM +SVI ARD+WLKP G++ PS A +++API + EG LD W +
Sbjct: 131 GYALLHESMLNSVIFARDKWLKPGGLILPSRADLYIAPINDVV-------VEGRLDFWST 183
Query: 214 FLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSN-LHPDQVIGTAAVVKNIDCSTATV 272
K YGVDMS +T + +K + + N + + V+ +D +T T+
Sbjct: 184 ----VKGQYGVDMSCMT----DFARKCIMNKDITVNPVTVEDVLSHPCKFAELDLNTVTL 235
Query: 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQE-IELTTAPSTYNGTHWG 331
+ +R+V F S + + + F WF V F PA+++ + L+T+P THW
Sbjct: 236 EQLRDVNGSF-SCVCFGSSSIHAFCVWFTVTF------PAEEKALVLSTSPFKAE-THWK 287
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHR 363
Q V +V V + + S+ S+EN R
Sbjct: 288 QAVLYLDDAVDVMQDTKVEGEISLYPSEENSR 319
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis GN=prmt6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 186/328 (56%), Gaps = 24/328 (7%)
Query: 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG 100
YF Y+ + +EM++D VR +AY ++ +N QGKTVLDVG G+GIL+++S QAG
Sbjct: 16 CEYFQCYSDVSVHEEMIADTVRTNAYKLALLRNHSSLQGKTVLDVGAGTGILSVFSVQAG 75
Query: 101 ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE 160
A+ VYAVEA+ MS A +VK+N++++ V+V+ SVE +PE+VD I+SEWMGY L+ E
Sbjct: 76 AQAVYAVEASSMSQLACQVVKSNDMENKVKVLNSSVESAEIPEQVDAIVSEWMGYALMYE 135
Query: 161 SMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKT 220
SM SVI ARD+WLKP G++ PS A +++AP+ + E LD W E K
Sbjct: 136 SMLPSVIYARDKWLKPGGLILPSCADLFIAPVNDLI-------VESRLDFW----SEVKG 184
Query: 221 YYGVDMSVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCSTATVDDIREVR 279
YGVDMS + + F+ + + + NL P+ V+ ++D + T +++R +
Sbjct: 185 MYGVDMSCM-QSFA---RSCIMNKEMAVNLVSPEDVLSFPVRFASLDLNVCTQEEVRNLH 240
Query: 280 SKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRP 339
F S G + L GF+ WF V F P + + L+T+P THW Q +
Sbjct: 241 GSFQFSCFG-SSLLHGFAVWFSVTF------PGENSVTLSTSPYG-EETHWKQTLLYLDE 292
Query: 340 SVRVSEGDDLNVSFSMTRSKENHRLLEV 367
V+V + ++ +++ S N R L V
Sbjct: 293 EVQVEQDTEITGDVTLSPSDINPRHLRV 320
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 41/368 (11%)
Query: 18 NGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHF 77
N GG + K+ YF +YA +EML D VR Y NS+F N+H F
Sbjct: 30 NSAPPEGGVKTNAEDMTSKDY----YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLF 85
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVE 137
+ K VLDVG+G+GIL +++A+AGA+KV +E + +SD+A +VKAN L VV +I+G VE
Sbjct: 86 KDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVE 145
Query: 138 DIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 196
++ LP EKVD+IISEWMGY L ESM ++VI ARD+WL P G+++P A +++ I
Sbjct: 146 EVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIE--- 202
Query: 197 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVI 256
D++ +DY+ W+ + YG DMS + K ++ L + P Q++
Sbjct: 203 -DRQYKDYKIH---WW------ENVYGFDMSCI--------KDVAIKEPLVDVVDPKQLV 244
Query: 257 GTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEI 316
A ++K +D T VDD+ S F ++ + +F++ F +
Sbjct: 245 SNACLIKEVDIYTVKVDDL-SFTSPFCLQVK-RNDYIHALVAYFNIEFTR-----CHKRT 297
Query: 317 ELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFS------ 370
+T+P + THW Q VF + V G+++ + M + +N+R L+ F
Sbjct: 298 GFSTSPES-PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQ 356
Query: 371 -CEIREST 377
CE+ ST
Sbjct: 357 LCELSCST 364
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6VRB0|ANM1B_XENLA Protein arginine N-methyltransferase 1-B OS=Xenopus laevis GN=prmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 189/343 (55%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLNPDGLIFPDRATLYVTAIE----DRQYKDYKIH---WW------ENV 199
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T VDD+
Sbjct: 200 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDLTFTSPF 251
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 252 CLQVKRNDYIH--AMVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 303
Query: 342 RVSEGDDLNVSFSMTRSKENHRLL----EVEFS---CEIREST 377
V G+++ + SM + +N+R L +++F CE+ ST
Sbjct: 304 TVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCST 346
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators (By similarity). Methylates ilf3 to regulate its DNA-binding activity. Methylates histone H4. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | ||||||
| 225445416 | 381 | PREDICTED: probable protein arginine N-m | 0.974 | 1.0 | 0.774 | 1e-180 | |
| 224114359 | 380 | hypothetical protein POPTRDRAFT_746911 [ | 0.918 | 0.944 | 0.799 | 1e-175 | |
| 449464586 | 379 | PREDICTED: probable protein arginine N-m | 0.964 | 0.994 | 0.767 | 1e-174 | |
| 363806714 | 374 | uncharacterized protein LOC100790625 [Gl | 0.936 | 0.978 | 0.777 | 1e-172 | |
| 356508346 | 374 | PREDICTED: probable protein arginine N-m | 0.936 | 0.978 | 0.771 | 1e-171 | |
| 297738912 | 337 | unnamed protein product [Vitis vinifera] | 0.859 | 0.997 | 0.804 | 1e-162 | |
| 297848734 | 372 | arginine N-methyltransferase family prot | 0.951 | 1.0 | 0.701 | 1e-161 | |
| 18390448 | 383 | putative protein arginine N-methyltransf | 0.923 | 0.942 | 0.717 | 1e-160 | |
| 353251757 | 376 | Chain C, A Uniquely Open Conformation Re | 0.923 | 0.960 | 0.717 | 1e-160 | |
| 16930707 | 383 | At1g04870/F13M7_12 [Arabidopsis thaliana | 0.923 | 0.942 | 0.717 | 1e-159 |
| >gi|225445416|ref|XP_002285026.1| PREDICTED: probable protein arginine N-methyltransferase 4.2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/391 (77%), Positives = 334/391 (85%), Gaps = 10/391 (2%)
Query: 1 MGSHTNGVVSGDLAGSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDR 60
MGS GV +GD S NGGG +DK VDFANYFCTYAFLYHQKEMLSDR
Sbjct: 1 MGSSAPGV-AGDRTASINGGGA---------TVIDKGVDFANYFCTYAFLYHQKEMLSDR 50
Query: 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV 120
VRMDAY+N+IF+NKHHF+GK VLDVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR LV
Sbjct: 51 VRMDAYYNAIFENKHHFRGKAVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARELV 110
Query: 121 KANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
KANNLQD+VEVIEGSVED+ LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVM
Sbjct: 111 KANNLQDIVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 170
Query: 181 YPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKY 240
YPSHARMW+APIRSGL DQK+ DYEG+++DW F+ ETK YGVDMSVLTKPFSEEQ+KY
Sbjct: 171 YPSHARMWMAPIRSGLVDQKKNDYEGSMNDWLCFVNETKNDYGVDMSVLTKPFSEEQRKY 230
Query: 241 YLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWF 300
YLQTSLW+NLHP QV+GTAA++K IDC TATVDDI EVRS F SSI E TRLCGF GWF
Sbjct: 231 YLQTSLWNNLHPHQVVGTAAIIKEIDCLTATVDDICEVRSNFSSSILIENTRLCGFGGWF 290
Query: 301 DVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360
DVHFRG +++PAQQEIELTTAPS + THWGQQVFL P R SEGDD+NVSF M RSKE
Sbjct: 291 DVHFRGRSDNPAQQEIELTTAPSLDSSTHWGQQVFLLHPPFRTSEGDDVNVSFLMNRSKE 350
Query: 361 NHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
NHRL+EV+ CEIR+S+G++LP KNKFYIE
Sbjct: 351 NHRLMEVDLGCEIRQSSGKLLPLFKNKFYIE 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114359|ref|XP_002332378.1| hypothetical protein POPTRDRAFT_746911 [Populus trichocarpa] gi|222832202|gb|EEE70679.1| hypothetical protein POPTRDRAFT_746911 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 287/359 (79%), Positives = 322/359 (89%)
Query: 33 TVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL 92
VDK VDFA YFCTYAFLYHQKEMLSDRVRMDAYFN+IF+NKHHF+GKTVLDVGTGSGIL
Sbjct: 22 AVDKGVDFAQYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKHHFKGKTVLDVGTGSGIL 81
Query: 93 AIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152
A+WSAQAGARKVYAVEAT MS HA+ LVKANNLQDVVEV+EGS+ED+ LPE+VDVIISEW
Sbjct: 82 AMWSAQAGARKVYAVEATTMSGHAQALVKANNLQDVVEVLEGSMEDVTLPEQVDVIISEW 141
Query: 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWY 212
MGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRSGLGDQK+ DY+G+++DW+
Sbjct: 142 MGYFLLRESMFDSVICARDRWLKPGGVMYPSHARMWMAPIRSGLGDQKKSDYDGSMNDWH 201
Query: 213 SFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV 272
+F+++TK YYGVDMSVLTKPFSEEQ KYYLQTSLW NLHP QVIGTAA++K IDC TATV
Sbjct: 202 AFMEDTKEYYGVDMSVLTKPFSEEQMKYYLQTSLWQNLHPHQVIGTAAIIKEIDCLTATV 261
Query: 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQ 332
+DI +V+S FLSSI E TRLCGF GWFDVHFRGS +PAQQEIELTTAPS N THWGQ
Sbjct: 262 NDILKVKSDFLSSITLENTRLCGFGGWFDVHFRGSKVNPAQQEIELTTAPSVDNSTHWGQ 321
Query: 333 QVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QVFL P V VSEGD ++VSF+M RSKENHRL+EVE CEI++S+G+ PP +NKFYIE
Sbjct: 322 QVFLLHPPVHVSEGDAISVSFTMDRSKENHRLMEVELGCEIKQSSGKQPPPSRNKFYIE 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464586|ref|XP_004150010.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Cucumis sativus] gi|449525602|ref|XP_004169805.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/378 (76%), Positives = 323/378 (85%), Gaps = 1/378 (0%)
Query: 15 GSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNK 74
GSS+ G G G VDK VDFA YFCTYAFLYHQKEML DRVRMDAYFN+IF+NK
Sbjct: 2 GSSSNGLGDRSAATNGALQVDKGVDFAQYFCTYAFLYHQKEMLCDRVRMDAYFNAIFKNK 61
Query: 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG 134
HHF+GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT+MS+HAR L+KANNLQ +++VIEG
Sbjct: 62 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATRMSEHARALIKANNLQHIIDVIEG 121
Query: 135 SVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194
S+ED+VLPEKVDVIISEWMGYFLLRESMFDSVI ARD WLKP GVMYPSHARMWVAPIRS
Sbjct: 122 SMEDVVLPEKVDVIISEWMGYFLLRESMFDSVIYARDHWLKPCGVMYPSHARMWVAPIRS 181
Query: 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQ 254
LGDQK DYEGA+DDWY+F+ +TKT YGVDMSVLTKPFSEEQ+KYYLQTSLW+NLHP Q
Sbjct: 182 KLGDQKMNDYEGAMDDWYNFVADTKTDYGVDMSVLTKPFSEEQRKYYLQTSLWNNLHPQQ 241
Query: 255 VIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQ 314
+IGTAAV+K+IDC TATV++I EV+S FLS+I E TR CG+ GWFDVHFRG EDPAQ
Sbjct: 242 IIGTAAVIKDIDCLTATVEEILEVKSSFLSTINSENTRFCGYGGWFDVHFRGRNEDPAQL 301
Query: 315 EIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIR 374
EIELTTAPS NGTHWGQQVFL P + VSEGD+L VSF M RS ENHRL+EVEF CEI
Sbjct: 302 EIELTTAPSVSNGTHWGQQVFLLHPPIWVSEGDELKVSFFMKRSNENHRLMEVEFGCEIN 361
Query: 375 ESTGQI-LPPIKNKFYIE 391
+ +G++ P NKFYIE
Sbjct: 362 QPSGKLHQQPFTNKFYIE 379
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806714|ref|NP_001242269.1| uncharacterized protein LOC100790625 [Glycine max] gi|255644892|gb|ACU22946.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/368 (77%), Positives = 319/368 (86%), Gaps = 2/368 (0%)
Query: 24 GGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVL 83
GGRGG A V K+VD+ANYFCTYAFLYHQKEMLSDRVRMDAYF++IFQNK HF GKTVL
Sbjct: 9 AGGRGG--APVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFDAIFQNKRHFAGKTVL 66
Query: 84 DVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143
DVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR LVKANNLQDVVEVIEGS+E+I LPE
Sbjct: 67 DVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALVKANNLQDVVEVIEGSMEEITLPE 126
Query: 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQD 203
KVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+APIR+G+ D K D
Sbjct: 127 KVDVIISEWMGYFLLRESMFDSVINARDRWLKPTGVMYPSHARMWMAPIRTGIVDHKLGD 186
Query: 204 YEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVK 263
YE +DDW+ F+ ETKTYYGVDMS LT+PFSEEQ+KYYLQTSLW+NLHP QV+GTA ++K
Sbjct: 187 YESTMDDWHHFVDETKTYYGVDMSTLTRPFSEEQRKYYLQTSLWNNLHPHQVVGTAGIIK 246
Query: 264 NIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS 323
IDC TATV DI +VRS F SI + T+LCGF GWFDVHFRG +EDPA+QEIELTTAPS
Sbjct: 247 EIDCLTATVADIEKVRSDFSMSITVDNTKLCGFGGWFDVHFRGRSEDPAEQEIELTTAPS 306
Query: 324 TYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPP 383
GTHWGQQVFL + +SEGDDL VSF M+RSKENHRL+EVE CEI + +G++L P
Sbjct: 307 VNYGTHWGQQVFLLHSPMHLSEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKLLAP 366
Query: 384 IKNKFYIE 391
KNK+YIE
Sbjct: 367 FKNKYYIE 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508346|ref|XP_003522918.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/368 (77%), Positives = 319/368 (86%), Gaps = 2/368 (0%)
Query: 24 GGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVL 83
GGRGG A V K+VD+ANYFCTYAFLYHQKEMLSDRVRMDAYFN+IF+NK HF GKTVL
Sbjct: 9 AGGRGG--APVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVL 66
Query: 84 DVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143
DVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR L+KANNLQDVVEVIEGS+E++ LPE
Sbjct: 67 DVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPE 126
Query: 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQD 203
+VDVIISEWMGYFLLRESMFDSVI ARD WLKPTGVMYPSHARMW+APIR+G+ D K D
Sbjct: 127 RVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGD 186
Query: 204 YEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVK 263
YE +DDW++F+ ETKTYYGVDM LTKPFSEEQ+KYYLQTSLW++LHP QVIGTA ++K
Sbjct: 187 YESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIK 246
Query: 264 NIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS 323
IDC TATV DI +VRS F SI E T+LCGF GWFDVHFRG +EDPA+ EIELTTAPS
Sbjct: 247 EIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPS 306
Query: 324 TYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPP 383
GTHWGQQVFL P +R++EGDDL VSF M+RSKENHRL+EVE CEI + +G+IL P
Sbjct: 307 VDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAP 366
Query: 384 IKNKFYIE 391
KNK+YIE
Sbjct: 367 FKNKYYIE 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738912|emb|CBI28157.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/337 (80%), Positives = 300/337 (89%), Gaps = 1/337 (0%)
Query: 56 MLSDRVRMDAYFNSIFQNKHHFQGK-TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSD 114
MLSDRVRMDAY+N+IF+NKHHF+GK VLDVGTGSGILAIWSAQAGARKVYAVEATKMS+
Sbjct: 1 MLSDRVRMDAYYNAIFENKHHFRGKKAVLDVGTGSGILAIWSAQAGARKVYAVEATKMSE 60
Query: 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWL 174
HAR LVKANNLQD+VEVIEGSVED+ LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWL
Sbjct: 61 HARELVKANNLQDIVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVISARDRWL 120
Query: 175 KPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFS 234
KPTGVMYPSHARMW+APIRSGL DQK+ DYEG+++DW F+ ETK YGVDMSVLTKPFS
Sbjct: 121 KPTGVMYPSHARMWMAPIRSGLVDQKKNDYEGSMNDWLCFVNETKNDYGVDMSVLTKPFS 180
Query: 235 EEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLC 294
EEQ+KYYLQTSLW+NLHP QV+GTAA++K IDC TATVDDI EVRS F SSI E TRLC
Sbjct: 181 EEQRKYYLQTSLWNNLHPHQVVGTAAIIKEIDCLTATVDDICEVRSNFSSSILIENTRLC 240
Query: 295 GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354
GF GWFDVHFRG +++PAQQEIELTTAPS + THWGQQVFL P R SEGDD+NVSF
Sbjct: 241 GFGGWFDVHFRGRSDNPAQQEIELTTAPSLDSSTHWGQQVFLLHPPFRTSEGDDVNVSFL 300
Query: 355 MTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
M RSKENHRL+EV+ CEIR+S+G++LP KNKFYIE
Sbjct: 301 MNRSKENHRLMEVDLGCEIRQSSGKLLPLFKNKFYIE 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848734|ref|XP_002892248.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338090|gb|EFH68507.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/379 (70%), Positives = 312/379 (82%), Gaps = 7/379 (1%)
Query: 13 LAGSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ 72
+ S NGGGG +A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQ
Sbjct: 1 MRSSQNGGGGP-------SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQ 53
Query: 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVI 132
NKHHF+GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVI
Sbjct: 54 NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVI 113
Query: 133 EGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 192
EGSVEDI LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API
Sbjct: 114 EGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPI 173
Query: 193 RSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHP 252
+S + D+K+ D++GA+ DW++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P
Sbjct: 174 KSNMADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNP 233
Query: 253 DQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPA 312
Q+IGT +VK +DC TA+V +I EVRS S I E TRLCGF GWFDV F G EDPA
Sbjct: 234 QQIIGTPTIVKEMDCLTASVSEIEEVRSNVSSVINVEHTRLCGFGGWFDVQFLGRKEDPA 293
Query: 313 QQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCE 372
QQEIELTTAPS + THWGQQVF+ + V EGD+LN+ M+RSKENHRL+E+E CE
Sbjct: 294 QQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLVMSRSKENHRLMEIELKCE 353
Query: 373 IRESTGQILPPIKNKFYIE 391
I+ES+G K ++IE
Sbjct: 354 IKESSGNPKESFKKTYFIE 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18390448|ref|NP_563720.1| putative protein arginine N-methyltransferase 4.2 [Arabidopsis thaliana] gi|75336166|sp|Q9MAT5.1|ANM10_ARATH RecName: Full=Protein arginine N-methyltransferase PRMT10 gi|7211979|gb|AAF40450.1|AC004809_8 Similar to protein arginine N-methyltransferase from Rattus norvegicus gb|U60882. ESTs gb|Z30908 and gb|Z29205 come from this gene [Arabidopsis thaliana] gi|22135775|gb|AAM91044.1| At1g04870/F13M7_12 [Arabidopsis thaliana] gi|332189633|gb|AEE27754.1| putative protein arginine N-methyltransferase 4.2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353251757|pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251758|pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251759|pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251760|pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 16 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 75
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 76 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 135
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 136 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 195
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 196 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 255
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 256 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 315
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 316 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 375
Query: 391 E 391
E
Sbjct: 376 E 376
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16930707|gb|AAL32019.1|AF436837_1 At1g04870/F13M7_12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 305/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELYCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | ||||||
| TAIR|locus:2010607 | 383 | PRMT10 "protein arginine methy | 0.923 | 0.942 | 0.717 | 1.2e-145 | |
| TAIR|locus:2087540 | 435 | PRMT6 "protein arginine methyl | 0.455 | 0.409 | 0.484 | 3.5e-58 | |
| ZFIN|ZDB-GENE-030131-693 | 378 | prmt1 "protein arginine methyl | 0.445 | 0.460 | 0.468 | 4.7e-50 | |
| UNIPROTKB|Q6VRB0 | 351 | prmt1-b "Protein arginine N-me | 0.445 | 0.495 | 0.468 | 1.6e-49 | |
| UNIPROTKB|Q28F07 | 351 | prmt1 "Protein arginine N-meth | 0.445 | 0.495 | 0.468 | 3.3e-49 | |
| UNIPROTKB|Q8AV13 | 369 | prmt1-a "Protein arginine N-me | 0.445 | 0.471 | 0.462 | 5.3e-49 | |
| FB|FBgn0037834 | 376 | Art1 "Arginine methyltransfera | 0.478 | 0.497 | 0.438 | 2.9e-48 | |
| UNIPROTKB|F1SKY6 | 379 | PRMT8 "Uncharacterized protein | 0.445 | 0.459 | 0.441 | 3.7e-48 | |
| ZFIN|ZDB-GENE-041105-1 | 512 | prmt3 "protein arginine methyl | 0.455 | 0.347 | 0.437 | 3.7e-48 | |
| UNIPROTKB|E2QWI7 | 376 | PRMT6 "Uncharacterized protein | 0.800 | 0.832 | 0.386 | 6e-48 |
| TAIR|locus:2010607 PRMT10 "protein arginine methyltransferase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
|
| TAIR|locus:2087540 PRMT6 "protein arginine methyltransferase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 93/192 (48%), Positives = 129/192 (67%)
Query: 39 DF-ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSA 97
DF YF +YA + +EM+ DR R + Y +I Q++ +GK V+DVG G+GIL+I+ A
Sbjct: 78 DFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEGKVVVDVGCGTGILSIFCA 137
Query: 98 QAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157
QAGA++VYAV+A+ ++ A+ +VKAN L D V V+ G VED+ + E+VDVIISEWMGY L
Sbjct: 138 QAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 197
Query: 158 LRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKE 217
L ESM SVI ARDRWLKP G++ PSHA +++API D+ Y ++D W
Sbjct: 198 LYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHP--DR----YSHSIDFW------ 245
Query: 218 TKTYYGVDMSVL 229
+ YG+DMS +
Sbjct: 246 -RNVYGIDMSAM 256
|
|
| ZFIN|ZDB-GENE-030131-693 prmt1 "protein arginine methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 88/188 (46%), Positives = 126/188 (67%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F NKH F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 60 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNKHLFKDKVVLDVGSGTGILCMFAAKAGAK 119
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L +V +I+G VE++ LP E VD+IISEWMGY L ES
Sbjct: 120 KVIGIECSSISDYAVKIVKANKLDHIVTIIKGKVEEVELPVENVDIIISEWMGYCLFYES 179
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WLKP G+++P A ++V I D++ +DY+ W+ +
Sbjct: 180 MLNTVIYARDKWLKPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 226
Query: 222 YGVDMSVL 229
YG+DMS +
Sbjct: 227 YGLDMSCI 234
|
|
| UNIPROTKB|Q6VRB0 prmt1-b "Protein arginine N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 88/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLNPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 199
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 200 YGFDMSCI 207
|
|
| UNIPROTKB|Q28F07 prmt1 "Protein arginine N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 88/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLTPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 199
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 200 YGFDMSCI 207
|
|
| UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 87/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 51 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 110
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 111 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 170
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A +++ I D++ +DY+ W+ +
Sbjct: 171 MLNTVIYARDKWLTPDGLIFPDRATLYITAIE----DRQYKDYK---IHWW------ENV 217
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 218 YGFDMSCI 225
|
|
| FB|FBgn0037834 Art1 "Arginine methyltransferase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 89/203 (43%), Positives = 129/203 (63%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A D+ YF +YA +EML D VR Y N+++ NKH FQGKTVLDVG G+GI
Sbjct: 45 ANADEMTSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGCGTGI 104
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVI 148
L++++A+AGA +V AV+ + + + AR +V NNLQDV+ V++G +E+I LP E VD+I
Sbjct: 105 LSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIEEIELPNGIEGVDII 164
Query: 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGAL 208
ISEWMGY L ESM D+V+ ARD+WLK G+M+P +++ I D++ +D +
Sbjct: 165 ISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDRGTLYITAIE----DRQYKDEK--- 217
Query: 209 DDWYSFLKETKTYYGVDMSVLTK 231
+W+ + YG DMS + K
Sbjct: 218 INWWDDV------YGFDMSCIRK 234
|
|
| UNIPROTKB|F1SKY6 PRMT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 83/188 (44%), Positives = 129/188 (68%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS++ NKH F+ K VLDVG+G+GIL++++A+AGA+
Sbjct: 61 YFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAK 120
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV+ +E + +SD++ ++KAN+L +++ + +G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 121 KVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYES 180
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WLKP G+M+P A ++V I D++ +D++ W+ +
Sbjct: 181 MLNTVIFARDKWLKPGGLMFPDRAALYVVAIE----DRQYKDFK---IHWW------ENV 227
Query: 222 YGVDMSVL 229
YG DM+ +
Sbjct: 228 YGFDMTCI 235
|
|
| ZFIN|ZDB-GENE-041105-1 prmt3 "protein arginine methyltransferase 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 81/185 (43%), Positives = 124/185 (67%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A + ++ D A YF +Y +EML D+VR ++Y + +++N F+ K VLDVG G+GI
Sbjct: 191 AELREDEDEA-YFSSYGHYSIHEEMLKDKVRTESYRDFMYRNMDVFKDKVVLDVGCGTGI 249
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150
L++++A+AGA+KV AV+ +++ A +V++NNL+D + +I+G +E+I LP EKVD+IIS
Sbjct: 250 LSMFAAKAGAKKVVAVDQSEIIYQAMDIVRSNNLEDTITLIKGRIEEIDLPVEKVDIIIS 309
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGD-QKQQDYEGALD 209
EWMGYFLL SM DSV+ ARDR+L G+++P + +A + GD QK D +
Sbjct: 310 EWMGYFLLFGSMLDSVLYARDRYLADDGLVFPDRCSISLAAV----GDTQKHNDRIAFWE 365
Query: 210 DWYSF 214
D Y F
Sbjct: 366 DVYGF 370
|
|
| UNIPROTKB|E2QWI7 PRMT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 129/334 (38%), Positives = 188/334 (56%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E D Y C YA + +EM++DRVR DAY I +N +GKTVLDVG G+GIL+++
Sbjct: 42 RERDQLYYEC-YADISVHEEMIADRVRTDAYRLGILRNWAGLRGKTVLDVGAGTGILSLF 100
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
QAGAR+VYAVEA+ + AR +V+ N L+D V V+ G VE + LPE+VD I+SEWMGY
Sbjct: 101 CVQAGARRVYAVEASAIWQQARDVVRLNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
LL ESM SV+ AR RWLK G++ P+ A ++VAP+ DQ E L W
Sbjct: 161 GLLHESMLRSVLHARARWLKEGGLLLPASAELFVAPV----SDQM---LELRLGFW---- 209
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+ K YGVDMS L + F+ + + + S L + V+ ++ + + ++
Sbjct: 210 SQVKQLYGVDMSCL-ESFATRCLMGHSEIVVQS-LSGEDVLARPHCFARLELARSGLEQE 267
Query: 276 RE--VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQ 333
E V +F S G + GF+ WF V F G A++ + L+T+P + THW Q
Sbjct: 268 LEAGVGGRFRFSCYGSAP-MHGFAVWFQVTFPGGD---AEKPLVLSTSPF-HPVTHWKQA 322
Query: 334 VFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEV 367
+ V V + D++ ++ S++NHRLL V
Sbjct: 323 LLYLNEPVPVEQDTDISGEITLLPSRDNHRLLRV 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9MAT5 | ANM10_ARATH | 2, ., 1, ., 1, ., - | 0.7174 | 0.9232 | 0.9425 | yes | no |
| A2Y953 | ANM10_ORYSI | 2, ., 1, ., 1, ., - | 0.6861 | 0.9207 | 0.9424 | N/A | no |
| Q9SNQ2 | ANM10_ORYSJ | 2, ., 1, ., 1, ., - | 0.6861 | 0.9207 | 0.9473 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00016844001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (381 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | 0.423 | ||||||||
| GSVIVG00021672001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa) | • | 0.414 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 391 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-13 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 8e-09 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 9e-09 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 9e-09 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 2e-08 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-08 | |
| pfam05185 | 445 | pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera | 6e-08 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 9e-08 | |
| COG0742 | 187 | COG0742, COG0742, N6-adenine-specific methylase [D | 1e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 2e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-07 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 5e-07 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 6e-07 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 7e-07 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 8e-07 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 1e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-06 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-06 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 3e-06 | |
| COG2521 | 287 | COG2521, COG2521, Predicted archaeal methyltransfe | 5e-06 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 1e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-05 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 2e-05 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 2e-05 | |
| PRK00107 | 187 | PRK00107, gidB, 16S rRNA methyltransferase GidB; R | 2e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 4e-05 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 4e-05 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 8e-05 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 8e-05 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 9e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 9e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 9e-05 | |
| TIGR00095 | 190 | TIGR00095, TIGR00095, RNA methyltransferase, RsmD | 1e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-04 | |
| COG0357 | 215 | COG0357, GidB, Predicted S-adenosylmethionine-depe | 4e-04 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 4e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 5e-04 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 0.001 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 0.003 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.003 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139
VLD+G G+G LA+ A +V V+ + + AR A L D VEV++G E++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 140 VL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
E DVIIS L E + + AR R LKP GV+
Sbjct: 60 PPEADESFDVIIS-DPPLHHLVEDLARFLEEAR-RLLKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 20/80 (25%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMSDHARTLVKANNLQDVV 129
GKTVLDVG GSGILAI +A+ GA+KV AVEA + ++A N ++ V
Sbjct: 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAR--ENAE----LNGVELNV 171
Query: 130 EVIEGSVEDIVLPEKVDVII 149
+ +G K DVI+
Sbjct: 172 YLPQGD-------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIEGS 135
G VLD+G G+G LAI + +V V+ +M + AR K L + ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQGD 59
Query: 136 VEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
D + L E D + G LL + D++ LKP G +
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLL--ELLDALA----SLLKPGGRL 99
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 8e-09
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT- 110
+ ++L D R+ + ++I + T D+G GSGIL++ +A A A +V A+E
Sbjct: 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDP 64
Query: 111 KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICAR 170
K + A + EV+ G D E DV+I E + L+ E VI A
Sbjct: 65 KRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALIEEK-QVPVINAV 121
Query: 171 DRWLKPTGVMYPSHARMWVAPIR 193
+L+ + P R+ P+R
Sbjct: 122 LEFLRYDPTIIPQEVRIGANPVR 144
|
Length = 252 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-09
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMS---DHARTLVKANNLQD 127
G+TVLDVG GSGILAI + + GA+KV AV A K + + ++ D
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD 219
Query: 128 VVEVIEGSVEDIVLPEKVDVII 149
+ E K DV++
Sbjct: 220 LPE------------GKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMSDHARTLVKANNLQDVVEV 131
GKTVLDVG GSGILAI +A+ GA+KV AVEA + ++AR N ++ +V+
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR--ENARL----NGVELLVQA 216
Query: 132 IEGSVEDIVLPEKVDVII 149
+ ++ DVI+
Sbjct: 217 KGFLLLEVPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 27/98 (27%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKV------YAVEATKMSDHARTLVKANNLQDV-VEV 131
G VL+VGTGSGI+AI +A+ G + V YAVE K + K NN+++ VEV
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN------AKLNNIRNNGVEV 77
Query: 132 IEGSVEDIVLPEKVDVII--------------SEWMGY 155
I + + +K DVI+ +W+ Y
Sbjct: 78 IRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNY 115
|
Length = 188 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123
Y + + + G VLDVG G GIL+ A+ GA V ++A+ K + A+ +
Sbjct: 46 DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALES 104
Query: 124 NLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182
+ ++ + +VED+ + DV+ + L +S + A + +KP G+++
Sbjct: 105 GVN--IDYRQATVEDLASAGGQFDVVTCMEV---LEHVPDPESFLRACAKLVKPGGILFL 159
Query: 183 S----HARMWVAPI 192
S + ++ I
Sbjct: 160 STINRTLKAYLLAI 173
|
Length = 243 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIEGSVE 137
GKTVLD+G G+GILAI +A GA +V AV+ + + AR + VE + V
Sbjct: 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVS 103
Query: 138 DIVLPEKVDVII 149
D K D +I
Sbjct: 104 DF--RGKFDTVI 113
|
Length = 198 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD G GSG + +A+AG +V VE + AR + L V V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 137 EDIVL--PEKVDVII-----SEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+++ D+++ G ++D + A R LKP GV+
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 85/327 (25%), Positives = 127/327 (38%), Gaps = 71/327 (21%)
Query: 59 DRVRMDAYFNSIF--------QNKHHFQGKTVLDVGTGSGILAIWSAQAGAR-----KVY 105
D V+ D Y +I + K +L VG G G L + +A K+Y
Sbjct: 159 DPVKYDQYERAIRKALLDRVPEKKKTSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIY 218
Query: 106 AVEATKMSDHARTLVKANNLQ---DVVEVIEGSVEDIVLPEKVDVIISEWMGYF----LL 158
AVE K + TL K N + D V +I + + PEK D+++SE +G F L
Sbjct: 219 AVE--KNPNAVVTLQKRVNFEEWGDKVTIISSDMREWKGPEKADILVSELLGSFGDNELS 276
Query: 159 RESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKET 218
E + D R+LKP G+ P ++API S QK + S K
Sbjct: 277 PECL-DGA----QRFLKPDGISIPQSYTSYLAPISSPKLYQKVKS--------MSDPKAF 323
Query: 219 KTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREV 278
+T Y V + K SEE + WS HP++ + R
Sbjct: 324 ETPYVVRLKSYYK-LSEEVQ------ECWSFEHPNR--------------DENSHNERYK 362
Query: 279 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY--NGTHWGQQVFL 336
+F G L GF+G+FD ++EL+ P+T+ N W F
Sbjct: 363 TLEFKIKHDGV---LHGFAGYFDAVLYK--------DVELSILPNTHTPNMISWFPIFFP 411
Query: 337 FRPSVRVSEGDDLNVSFSMTRSKENHR 363
+ V V +G +L S + R +N +
Sbjct: 412 LKKPVYVKKGQEL--SVHIWRKTDNRK 436
|
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSVE 137
K V+DVG GSGIL+I + + GA KV ++ ++ + AR + N + D ++V +E
Sbjct: 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE 219
Query: 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
+ K DVI++ + + S + WL +G++
Sbjct: 220 QPI-EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+DRVR +A FN + + +G VLD+ GSG L + + GA +V VE A
Sbjct: 26 TDRVR-EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVE---KDRKAV 79
Query: 118 TLVKAN----NLQDVVEVIEGSVEDIV----LPEKVDVIISEWMGYFL-------LRESM 162
++K N L+ V+ + E D++ FL L +
Sbjct: 80 KILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV-------FLDPPYAKGLLDKE 132
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPI 192
++ + WLKP ++ H + P
Sbjct: 133 LALLLLEENGWLKPGALIVVEHDKDVELPE 162
|
Length = 187 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKAN---NLQDVVEVIEG 134
K +LD+GTGSG +AI A+ G +V AV+ S A L + N N V V++
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDI---SPDALALARENAERNGLVRVLVVQS 167
Query: 135 SVEDIVLPEKVDVIIS 150
+ + L K D+I+S
Sbjct: 168 DLFE-PLRGKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 83 LDVGTGSGILAIWSAQAGARKVYAVE-ATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141
LDVG G+G+LA A+ G +V V+ + +M AR + + G ED+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 142 PEK-VDVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMY 181
P++ DV++S + + L LRE A R LKP G +
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALRE-------IA--RVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
+ +LD+G G+G L + AQ K+ VE + ++ A+ V N L++ ++VIE
Sbjct: 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102
Query: 135 SVEDI---VLPEKVDVIIS 150
+++ ++ D+II
Sbjct: 103 DIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 65 AYFNSIFQNKHH------FQGKTVLDVGTGSGILAIWSAQAGARKVYAVE----ATKMSD 114
YF+ + +G+TVLD+ G G +I A+ G KVYA++ A +
Sbjct: 169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-- 226
Query: 115 HARTLVKANNLQDVVEVIEGSVED-IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRW 173
+ ++ N ++ VE I G + D II MG +S + + A +
Sbjct: 227 -LKENIRLNKVEGRVEPILGDAREVAPELGVADRII---MGLP---KSAHEFLPLALEL- 278
Query: 174 LKPTGVM 180
LK G++
Sbjct: 279 LKDGGII 285
|
Length = 341 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD+G G G+L A+ +V V+ + + AR + AN L + EV +
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWSDL 90
Query: 137 EDIVLPEKVDVIIS 150
V P K D+IIS
Sbjct: 91 YSAVEPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 8e-07
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEATKMSDHARTLVKAN---NLQDVVEV 131
VLD+GTGSG +A+ A A R +V AV+ S A + + N D VE
Sbjct: 87 GPLRVLDLGTGSGAIAL--ALAKERPDARVTAVDI---SPEALAVARKNAARLGLDNVEF 141
Query: 132 IEGSVEDIVLPEKVDVIIS 150
++ + + K D+I+S
Sbjct: 142 LQSDWFEPLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+DRVR +A FN + G VLD+ GSG L + + GA V VE A
Sbjct: 25 TDRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVE---KDKKAV 79
Query: 118 TLVKAN----NLQDVVEVIEGSVEDIVL-----PEKVDVIISEWMGYFL---LRESMFDS 165
+K N L+ V+ +L D++ FL + + +
Sbjct: 80 ATLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEE 132
Query: 166 VIC--ARDRWLKPTGVMY---PSHARMWVAPIRSGLGDQKQQDY 204
+ A + WL P ++ S + P + L +++ Y
Sbjct: 133 ALELLAENGWLNPNALIVVETESDEELPEQP--ANLELHREKKY 174
|
Length = 183 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 78 QGKTVLDVGTGSGILA-IWSAQAGAR-KVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
G VLD+G G+G L I + + G +V ++ ++ + A+ K + VE I+G
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQG 61
Query: 135 SVEDI----VLPEKVDVIISEWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHARMW 188
+E++ + DV+IS + + D + R LKP GV+ S +
Sbjct: 62 DIEELPQLQLEDNSFDVVIS-----NEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLL 116
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVE 137
G T+LD+G G G LAI++A+ V V ++ +A + A L+D VEV
Sbjct: 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132
Query: 138 DIVLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGVM 180
D E D I+S E +G +D LKP G M
Sbjct: 133 D--FEEPFDRIVSVGMFEHVGK-----ENYDDFFKKVYALLKPGGRM 172
|
Length = 283 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-06
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEATKMSDHARTLVKAN--- 123
+ + VLD+GTGSG +A+ A A R +V AV+ S A + + N
Sbjct: 100 ALEALLLKEPLRVLDLGTGSGAIAL--ALAKERPDAEVTAVDI---SPEALAVARRNAKH 154
Query: 124 NLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L VE ++G + + + D+I+S
Sbjct: 155 GLGARVEFLQGDWFEPLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN----NLQDV-VEVI 132
+G+ VLD TG G AI + + GA V VE + L K N L ++ +++I
Sbjct: 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDP---NVLELAKLNPWSRELFEIAIKII 190
Query: 133 EGSVEDIV--LP-EKVDVII 149
G ++V E D II
Sbjct: 191 LGDAYEVVKDFDDESFDAII 210
|
Length = 287 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIE 133
G VL+ GTGSG L + A+A V E + AR + L D V +
Sbjct: 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL 152
Query: 134 GSVEDIVLPEKVDVII 149
G V + + E VD +
Sbjct: 153 GDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 79 GKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMSDHARTLVKANNLQ---DVVEVIE 133
G+TVLD+G+G G +A+ G KV V+ M+ +AN + VE
Sbjct: 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVD---MTPEMLAKARANARKAGYTNVEFRL 134
Query: 134 GSVEDIVLPEK-VDVIIS 150
G +E + + + VDVIIS
Sbjct: 135 GEIEALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 29 GGTATVDKEVDFANYFCTYAF----LYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLD 84
T T+ KE C + +Y ++ +R R+ +G+ V+D
Sbjct: 61 DRTETIHKE-----NGCRFKIDVSKVYFSPRLIGERERIAKLVK---------EGEVVVD 106
Query: 85 VGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTL----VKANNLQDVVEVIEGSVEDI 139
+ G G +I A+ A++VYAVE ++ A +K N ++ V+ I G V D+
Sbjct: 107 MFAGIGPFSIPIAKHSKAKRVYAVE---LNPEAVKYLKENIKLNKVEGVISPILGDVRDV 163
Query: 140 VLPEKVDVIISEWMGY 155
+L D +I M
Sbjct: 164 ILEGVADRVI---MNL 176
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHART 118
+R+D ++I +NK G VLDVG G G+L+ A+ GA V ++A++ + A+
Sbjct: 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKL 85
Query: 119 LVKANNLQDVVEVIEGSVEDIV--LPEKVDVIIS 150
K + L +E SVED+ + DV+
Sbjct: 86 HAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTC 118
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 67 FNSIFQNKHHFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121
+S+ + G+ VLDVG+G+G LAI A+ KV V++ K R +
Sbjct: 34 LDSLAIAPYLPGGERVLDVGSGAGFPGIPLAI--ARPEL-KVTLVDSLGKKIAFLREVAA 90
Query: 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L++ V V+ G E+ EK DV+ S
Sbjct: 91 ELGLKN-VTVVHGRAEEFGQEEKFDVVTS 118
|
Length = 187 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDV 128
I ++ GK VLDVG G GIL+ A+ GA V ++A + + AR + L+
Sbjct: 40 IREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK-- 96
Query: 129 VEVIEGSVEDIVL--PEKVDVII 149
++ + + E++ P + DV+
Sbjct: 97 IDYRQTTAEELAAEHPGQFDVVT 119
|
Length = 233 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQD--VVEVIEGS 135
G+ VLD+ TGSG LA+ +A AGA V AV+ +S A + N L V+V G
Sbjct: 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVD---ISRRAVRSARLNALLAGVDVDVRRGD 92
Query: 136 VEDIVLPEKVDVIIS 150
V DV++S
Sbjct: 93 WARAVEFRPFDVVVS 107
|
Length = 223 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 75 HHFQG-------KTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKAN-- 123
F K +LD+ TGSG +AI A A A V+A +S A + + N
Sbjct: 111 DGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAE----VDAVDISPDALAVAEINIE 166
Query: 124 --NLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L+D V +I+ + + K D+I+S
Sbjct: 167 RHGLEDRVTLIQSDLFAALPGRKYDLIVS 195
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA---NNLQDVVEVIEGS 135
GK VLD+G GSG++AI +A+AGA +V A +D L +A N + V ++
Sbjct: 80 GKRVLDLGAGSGLVAIAAARAGAAEVVA------ADIDPWLEQAIRLNAAANGVSILFTH 133
Query: 136 VEDIVLPEKVDVII 149
+ I P D+++
Sbjct: 134 ADLIGSPPAFDLLL 147
|
Length = 218 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 76 HFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130
+ GK V+D+G+G+G LAI + K+ +E+ K R + L + VE
Sbjct: 40 YLDGKRVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNN-VE 95
Query: 131 VIEGSVEDIVLPEKVDVIIS 150
++ G ED E+ D+I S
Sbjct: 96 IVNGRAEDFQHEEQFDIITS 115
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVV 129
V+DVG G +++ A+ GA +V A E + VK NNL +VV
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVV 51
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 9e-05
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 82 VLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVEDI- 139
+LD+G G+G + A+AG V V+ +K + A+ ++ + V + D+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 140 VLPEKVDVIIS 150
D++I
Sbjct: 59 FEEGSFDLVIC 69
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHART 118
DRVR ++ FN + G LD+ GSG L + + GA VE + A+T
Sbjct: 35 DRVR-ESLFNILRP---DIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKV--AQT 88
Query: 119 LVKANNLQ------DVVEVIEGSVEDIV-LPEK---VDVIISEWMGYFL---LRESMFDS 165
L + NL + V+ +V ++ L +K D+I +L + ++
Sbjct: 89 LKE--NLSTLKKSGEQATVLNDAVRALLFLAKKQTPFDII-------YLDPPFNRGLLEA 139
Query: 166 VI--CARDRWLKPTGVMYPSHARMWVAPI 192
++ ++WL P G++ + R P
Sbjct: 140 LLELLGENKWLNPKGLIVVEYDRENELPT 168
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 69 SIFQNKHHFQGKTVLDVGTGSGIL-AIWSAQAGARKVYAVE-ATKMSDHARTLVKANNLQ 126
++ + K F +VLD+G G+G L + + A + + M A+T + N
Sbjct: 25 ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN--- 81
Query: 127 DVVEVIEGSVEDIVLPE-KVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGV 179
V+ I G E + L + D+I+S +W + R LKP G+
Sbjct: 82 --VQFICGDAEKLPLEDSSFDLIVSNLALQWCD-------DLSQALSELARVLKPGGL 130
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 76 HFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130
+ K VLD+G+G+G LAI KV +E+ K R + K L++ VE
Sbjct: 65 DGKAKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLEN-VE 120
Query: 131 VIEGSVEDI-VLPEKVDVIIS 150
++ G E+ ++ DV+ S
Sbjct: 121 IVHGRAEEFGQEKKQYDVVTS 141
|
Length = 215 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEATKMSDHARTLVKANNLQ----DVVEVI 132
G + D+G G+G + I W+ + +V A+E + + + + N D +EV+
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIER--NAARFGVDNLEVV 89
Query: 133 EGSVEDIVLPE-KVDVI 148
EG + + D I
Sbjct: 90 EGDAPEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 82 VLDVGTGSG----ILAIWSAQAGARKVYAVEATKMSDHART-----LVKANNLQDVVEVI 132
V DVG+G+G LAI +K+ +E S + L K NL + V ++
Sbjct: 52 VADVGSGAGFPGIPLAIAFPD---KKLTLLE----SLLKKINFLEELKKELNL-ENVTIV 103
Query: 133 EGSVEDIVLPEKVDVIIS----------EWM-------GYFLL--RESMFDSVICARDRW 173
E+ E+ DVI S EW GYFL + D +
Sbjct: 104 HARAEEYQHEEQYDVITSRAVASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKAC 163
Query: 174 LK 175
K
Sbjct: 164 QK 165
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 79 GKTVLDVGTGSGILAIWSAQ-AGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD+G G G+L + A+ + K+ V+ + + AR + AN +++ EV ++
Sbjct: 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNL 217
Query: 137 EDIVLPEKVDVIIS 150
+ V K D+IIS
Sbjct: 218 YEPV-EGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 83 LDVGTGSGILAIWSAQAGAR-KVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVEDI- 139
LD+G G+G L +A + V+ + + A + A L D V V V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRV-RLDVLDAI 59
Query: 140 -VLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGV 179
+ P DV+++ + ++ ++ R LKP GV
Sbjct: 60 DLDPGSFDVVVASNVLHHLAD---PRAVLRNL----RRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 80 KTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHA----RTLVKANNLQDVVEVIE 133
+LD+ TGSG +AI A A A V+A +S A ++ + L+D V +IE
Sbjct: 135 TRILDLCTGSGCIAIACAYAFPDAE----VDAVDISPDALAVAEINIERHGLEDRVTLIE 190
Query: 134 GSVEDIVLPEKVDVIIS 150
+ + + D+I+S
Sbjct: 191 SDLFAALPGRRYDLIVS 207
|
Length = 307 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (87), Expect = 0.003
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 18/183 (9%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVE-ATKMSDHARTLVKANNLQDVVEV---IE 133
G VLD+G G+G LA+ + G V V+ + +M AR + L V V
Sbjct: 49 GLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108
Query: 134 GSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIR 193
G V D++IS + + L ++ R LKP G + S
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLLPPAKALRELL----RVLKPGGRLVLSD--------- 155
Query: 194 SGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPD 253
+ L L+ ++ + + E+ L
Sbjct: 156 LLRDGLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLA 215
Query: 254 QVI 256
+++
Sbjct: 216 RLL 218
|
Length = 257 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.98 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.94 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.68 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.65 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.64 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.62 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.57 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.57 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.56 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.53 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.53 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.52 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.51 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.51 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.51 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.46 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.45 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.44 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.44 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.43 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.43 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.43 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.42 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.42 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.42 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.42 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.41 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.41 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.4 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.4 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.39 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.39 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.39 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.38 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.38 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.37 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.36 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.36 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.34 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.32 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.32 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.31 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.31 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.31 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.31 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.31 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.31 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.3 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.3 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.3 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.3 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.28 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.28 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.28 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.27 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.27 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.27 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.26 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.25 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.25 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.25 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.24 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.23 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.23 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.23 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.21 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.21 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.19 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.19 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.19 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.19 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.17 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.17 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.17 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.17 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.17 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.16 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.16 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.15 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.15 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.14 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.13 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.13 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.13 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.13 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.12 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.11 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.11 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.1 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.09 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.07 | |
| PLN02476 | 278 | O-methyltransferase | 99.07 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.06 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.04 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.03 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.03 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.03 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.0 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.98 | |
| PLN02366 | 308 | spermidine synthase | 98.97 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.97 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.97 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.97 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.96 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.94 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.93 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.92 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.91 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.89 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.89 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.87 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.86 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.85 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.84 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.84 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.83 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.83 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.82 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.82 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.81 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.79 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.77 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.76 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.76 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.75 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.72 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.71 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.7 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.69 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.68 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.68 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.67 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.66 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.66 | |
| PLN02823 | 336 | spermine synthase | 98.66 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.65 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.65 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.65 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.64 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.63 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.6 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.58 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.58 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.57 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.56 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.55 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.51 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.51 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.5 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.49 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.49 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.48 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.48 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.47 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.43 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.43 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.42 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.41 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.41 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.4 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.31 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.31 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.28 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.26 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.23 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.23 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.14 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.13 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.12 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.11 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.1 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.09 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.07 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.06 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.05 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.97 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.93 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.93 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.89 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.89 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.88 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.87 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.86 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.85 | |
| PHA01634 | 156 | hypothetical protein | 97.85 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.8 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.78 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.75 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.73 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.71 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.67 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.66 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.6 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.53 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.49 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.47 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.4 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.29 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.23 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.22 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.18 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.16 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.13 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.12 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.12 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.04 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.02 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.99 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.96 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.84 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.81 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.74 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.59 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.59 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.58 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.47 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.41 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.37 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.29 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.15 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.96 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.87 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.79 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.68 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.64 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.5 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.45 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.1 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.95 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.94 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.94 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.76 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.59 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.55 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.54 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.38 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.02 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.74 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.65 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.57 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.53 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.38 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.17 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.11 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.6 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.43 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.37 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.35 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.15 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 92.05 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.04 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.93 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.82 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.71 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.66 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.42 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.28 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 91.13 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.94 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 90.54 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.21 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.14 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.02 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.82 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.73 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 89.62 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 89.53 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.46 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.97 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 88.96 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 88.92 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.86 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 88.62 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.52 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.97 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.79 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 87.77 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 87.33 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 87.22 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.09 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 86.97 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.71 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.5 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.24 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.17 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 86.0 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 85.93 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 85.41 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 85.13 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 85.03 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 85.01 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 85.01 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 84.85 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 84.3 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 84.18 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 83.71 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 83.68 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 83.56 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 83.37 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 82.8 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 82.46 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 82.45 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 82.42 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 82.35 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 82.3 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 82.2 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 81.91 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 81.89 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.59 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 81.38 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 81.34 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 81.29 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 81.22 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 81.11 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.65 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 80.56 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.13 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 80.02 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 80.01 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=448.99 Aligned_cols=325 Identities=42% Similarity=0.709 Sum_probs=297.1
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHH
Q 016320 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHA 116 (391)
Q Consensus 37 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a 116 (391)
....+.||++|+.+..|+.||+|.+|+.+|+.+|.++...+++++|||+|||||++++++|++|+++|+|||.|.+++.|
T Consensus 19 ~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a 98 (346)
T KOG1499|consen 19 MTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFA 98 (346)
T ss_pred cchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHH
Confidence 34667899999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 195 (391)
++.+..|++++.|+++++.++++.+| +++|+|+||||||++..|.++++++.+..++|+|||.++|+.++++++++.+.
T Consensus 99 ~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~ 178 (346)
T KOG1499|consen 99 RKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDD 178 (346)
T ss_pred HHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999875
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016320 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
. ...+.+.+|+ ++|||||+++.+ ....++.++.+.+++++++|+.+.++|+.++..+++
T Consensus 179 ~------~~~~~i~fW~-------~Vygfdms~~~~--------~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~ 237 (346)
T KOG1499|consen 179 S------YKDDKIGFWD-------DVYGFDMSCIKK--------IAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDL 237 (346)
T ss_pred h------hhhhhcCccc-------cccccchhhhhh--------hhhcccceeccChhHhcccceeeEEeeeeeeeccce
Confidence 2 3456678895 999999999954 344568899999999999999999999999999999
Q ss_pred cceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEE
Q 016320 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSM 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~ 355 (391)
.++..|++.++ +++.+|||++|||+.|.... +...+.+||+|. .+.|||+|+||.|+.|+.|+.|+.|.+++.+
T Consensus 238 -~F~s~f~l~v~-r~~~i~g~v~yFDv~F~~~~---~~~~~~fST~P~-~p~THWKQtVfyl~~p~~v~~ge~i~g~it~ 311 (346)
T KOG1499|consen 238 -SFTSPFKLKVT-RNGYLHAFVAYFDVEFTGCH---GKKRLGFSTSPS-SPYTHWKQTVFYLENPLTVKEGEDITGTITM 311 (346)
T ss_pred -eeccceEEEEc-cCceEEEEEEEEEEeeccCC---CCCcceeecCCC-CCCceeeeEEEEecCccceecCceEEEEEEE
Confidence 69999999999 99999999999999997651 126799999995 8999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEEEEEEEeccccccCCcccceee
Q 016320 356 TRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (391)
.++.+|+|.+++.+.|+.++. +..-+...++|-
T Consensus 312 ~~~~~~~R~l~~~l~~~~~~~-~~~~~~~~~~y~ 344 (346)
T KOG1499|consen 312 KPNKKNNRDLDISLSLNFKGQ-GLCSFSESDSYP 344 (346)
T ss_pred eeCCCCCccceEEEEEecCCc-cccccccccccc
Confidence 999999999999999999998 443444444443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-51 Score=367.22 Aligned_cols=318 Identities=37% Similarity=0.615 Sum_probs=283.5
Q ss_pred cccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHH
Q 016320 35 DKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSD 114 (391)
Q Consensus 35 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~ 114 (391)
.++.....||..|+++..+.+|+.|.+|+..|.++|.++...++++.|||+|||+|+++++++++|+++|+|||.|+|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq 213 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ 213 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeeccc
Q 016320 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 194 (391)
+|++.++.|.+.++|.++.|.++++++|+++|+||||+|++.+.+|.++++.+.+. ++|+|.|.++|....+.++|..+
T Consensus 214 yA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsD 292 (517)
T KOG1500|consen 214 YARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSD 292 (517)
T ss_pred HHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccch
Confidence 99999999999999999999999999999999999999999999999999999987 99999999999999999999976
Q ss_pred CcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccc
Q 016320 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDD 274 (391)
Q Consensus 195 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~ 274 (391)
. +.+.+......+|.. .+.||+|++.+..... +-|+.+|.++.+++.-+...+ ....+||.....++
T Consensus 293 E---~Ly~E~~nkAnFWyQ-----q~fyGVdLt~L~g~a~----~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEed 359 (517)
T KOG1500|consen 293 E---QLYVEQFNKANFWYQ-----QNFYGVDLTPLYGSAH----QEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEED 359 (517)
T ss_pred H---HHHHHHHhhhhhhhh-----hccccccchhhhhhhh----hhhhccccccccccceeeccc-hHhhhhhhhcccch
Confidence 4 445555667788975 6899999999855332 347789999998887655544 66789999999999
Q ss_pred ccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEE
Q 016320 275 IREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~ 354 (391)
+..+...+++.+. ..|.+||+++|||+.|.++ .-.+.++|+| ..+.|||.|..+.|..|+.|++|++|++++.
T Consensus 360 lh~i~iPlkF~~~-~~g~iHGLAfWFDV~F~GS-----~~~~wlsTap-~apltHwyqvrCll~~Pi~v~aGq~ltGr~~ 432 (517)
T KOG1500|consen 360 LHEIDIPLKFHAL-QCGRIHGLAFWFDVLFDGS-----TVQVWLSTAP-TAPLTHWYQVRCLLSQPIFVKAGQTLTGRLL 432 (517)
T ss_pred heeecccceehhh-hhcceeeeeeEEEEEeccc-----eEEEccCCCC-CCCcccceeeeeeccCchhhhcCCeeeeeEE
Confidence 9778888899888 8899999999999999876 4457899999 5899999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEEEEEEEec
Q 016320 355 MTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 355 ~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+..+.. .+|+|.+.+.++.
T Consensus 433 LiA~~~--QSY~i~i~l~~~~ 451 (517)
T KOG1500|consen 433 LIANSR--QSYDITITLSAKM 451 (517)
T ss_pred EEEccc--cceeEEEEEEeee
Confidence 988775 4788888777654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=352.90 Aligned_cols=274 Identities=32% Similarity=0.509 Sum_probs=209.8
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC--------CCCEEEEECCcccHHHHHHHHcC-----CCeEEEEech-HHHHHHHHHH
Q 016320 55 EMLSDRVRMDAYFNSIFQNKHHF--------QGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~--------~~~~VLDlGcG~G~ls~~~a~~g-----~~~V~avD~s-~~~~~a~~~~ 120 (391)
.+.+|..+|+.|.+||.+++... ++++|||||||+|.|+.++++++ +.+|+|||.| .+...+++++
T Consensus 155 ~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 155 VFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 45689999999999998765321 35789999999999999999886 5799999999 5565666777
Q ss_pred HHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016320 121 KANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 121 ~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
+.|+++++|+++++|++++.+|+++|+||||+||+++.+| ..+.++.++.|+|||+|++||..++.|++|+.+..+.+.
T Consensus 235 ~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 235 NANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp HHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred HhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 9999999999999999999999999999999999999998 456679999999999999999999999999987532111
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccc-eeEEEEEcCCCCc--ccccc
Q 016320 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTA-AVVKNIDCSTATV--DDIRE 277 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~dl~~~~~--~~~~~ 277 (391)
+..|. . ...+..|.+..+++...++.+ ..+++|++.+... +....
T Consensus 314 -------~~~~~-------~------------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~ 361 (448)
T PF05185_consen 314 -------VRNWW-------N------------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNS 361 (448)
T ss_dssp -------HHHHH-------G------------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSE
T ss_pred -------HHhhc-------c------------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhh
Confidence 11111 0 011223556666666778888 8899998887662 23336
Q ss_pred eeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC---CCCCCccceEEecCCccccCCCCEEEEEEE
Q 016320 278 VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST---YNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354 (391)
Q Consensus 278 ~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~---~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~ 354 (391)
+...+++.+. ++|++|||++||++.|++ +|.|||+|.. .+++||+|++|||++|+.|++|++|++++
T Consensus 362 r~~~~~F~i~-~~g~vhGfagwFd~~Ly~--------~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i- 431 (448)
T PF05185_consen 362 RSSELEFKIK-RDGVVHGFAGWFDAVLYG--------DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHI- 431 (448)
T ss_dssp EEEEEEEEBS-SSEEEEEEEEEEEEEEEC--------SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEE-
T ss_pred eeeeEEEeeC-CCcEEEEEEEEEEEEeeC--------CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEE-
Confidence 7888999998 999999999999999964 5999999952 26899999999999999999999998665
Q ss_pred EEeCCCCCeeeEEEEEEEEec
Q 016320 355 MTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 355 ~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+|+.+++| |||||.|++
T Consensus 432 -~R~~~~~~---vWYEW~v~s 448 (448)
T PF05185_consen 432 -WRKTDDRK---VWYEWSVES 448 (448)
T ss_dssp -EEECCSTC---EEEEEEEEE
T ss_pred -EEEcCCCc---EEEEEEEeC
Confidence 77888888 999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-32 Score=255.79 Aligned_cols=288 Identities=22% Similarity=0.326 Sum_probs=222.6
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC-----C--CCEEEEECCcccHHHHHHHHc---CC--CeEEEEech-HHHHHHHHHHH
Q 016320 55 EMLSDRVRMDAYFNSIFQNKHHF-----Q--GKTVLDVGTGSGILAIWSAQA---GA--RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcG~G~ls~~~a~~---g~--~~V~avD~s-~~~~~a~~~~~ 121 (391)
.+-.|.+.|..|.+||..++... + -.+|+-+|+|.|.+.....++ -. -+++|||.+ .++-.... .+
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RN 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hc
Confidence 34578999999999998775432 1 246889999999986554443 21 268999999 55444433 55
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
...++++|+++.+|++.+..| ++.|++|||++|.+.++|- -+..|+.+.++|||+|+.||..++.|.+|+.+..+
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l--- 491 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL--- 491 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH---
Confidence 567788899999999999987 9999999999999999984 46679999999999999999999999999987532
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016320 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
|+...+. . +...| ..+.+..++.-..|++|+.+++|......++--.+...
T Consensus 492 ----------~q~v~a~-~-----~~~~f-------------e~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~ 542 (649)
T KOG0822|consen 492 ----------YQEVKAT-N-----DPNAF-------------EAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSK 542 (649)
T ss_pred ----------HHHHHhc-C-----Ccccc-------------ccceEEEecceeecCCCCceeEEecCCcccccccccce
Confidence 3322111 0 11222 23556667777778889999999887654433224555
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeC
Q 016320 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRS 358 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~ 358 (391)
..+|++. .+|.+|||++|||+.| +++|.||+.|.+ +.+.+|++++|||++|+.|..|++|++.| +|.
T Consensus 543 s~eF~~~-~~~~lHGFaGYFd~~L--------YkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~--wR~ 611 (649)
T KOG0822|consen 543 SVEFKVK-SNGVLHGFAGYFDAVL--------YKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHF--WRC 611 (649)
T ss_pred eEEEecC-CCceEeecchhhhhhh--------hheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEE--EEE
Confidence 6677777 9999999999999999 568999999974 35689999999999999999999999655 888
Q ss_pred CCCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016320 359 KENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 359 ~~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
.++.+ |||||.|+ .++ .+.=+..|++|++
T Consensus 612 ~d~~k---VWYEW~v~~~~~l~~~~~s~iHN~~Grsy~~ 647 (649)
T KOG0822|consen 612 VDSTK---VWYEWSVESFIYLMKPSSSEIHNPNGRSYSM 647 (649)
T ss_pred eCCce---eEEEEEeeeeecccCCCcccccCCCCceeec
Confidence 88888 99999998 455 4446778888875
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=220.19 Aligned_cols=296 Identities=19% Similarity=0.252 Sum_probs=197.0
Q ss_pred hcCChHhHHHHHHHHHhcCCCC---------------------------------CCCEEEEECCcccHHHHHHHHc---
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHF---------------------------------QGKTVLDVGTGSGILAIWSAQA--- 99 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDlGcG~G~ls~~~a~~--- 99 (391)
+-+|...|+.|.++|.+++... ...+|+-+|+|.|.|.-.+.++
T Consensus 645 FEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~ 724 (1072)
T PTZ00357 645 FERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSA 724 (1072)
T ss_pred HcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHH
Confidence 4578899999999888775210 0136899999999985544443
Q ss_pred -CCC-eEEEEech-HHHHHHHHH-HHHcCC-------CCcEEEEEcccccCCCC------------CcccEEEEcccccc
Q 016320 100 -GAR-KVYAVEAT-KMSDHARTL-VKANNL-------QDVVEVIEGSVEDIVLP------------EKVDVIISEWMGYF 156 (391)
Q Consensus 100 -g~~-~V~avD~s-~~~~~a~~~-~~~~~~-------~~~v~~~~~d~~~~~~~------------~~~D~Ivs~~~~~~ 156 (391)
|.+ +|+|||.| ..+...+.+ .....+ .++|+++..|++.+..+ +++|+||||++|.+
T Consensus 725 ~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 725 LGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred cCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 322 79999999 644443333 233345 34699999999998543 27999999999999
Q ss_pred ccCcchHHHHHHHHhccccC----Ce-------EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccc
Q 016320 157 LLRESMFDSVICARDRWLKP----TG-------VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVD 225 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~Lkp----gG-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~d 225 (391)
.++|- -+..|+.+.+.||+ +| +.||..++.|++|+.+..+.+..... ...|+-
T Consensus 805 GDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~---------------~~~glt 868 (1072)
T PTZ00357 805 GDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA---------------AVKGLT 868 (1072)
T ss_pred ccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh---------------hhcccc
Confidence 99984 45568888888875 55 58999999999999886443221100 000000
Q ss_pred cccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcc----------------cccceeeEEEEEEEec
Q 016320 226 MSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVD----------------DIREVRSKFLSSIRGE 289 (391)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~----------------~~~~~~~~~~~~~~~~ 289 (391)
..... .... .......+.+..++....|+.|+++++|.+...... .....+..+.|++. .
T Consensus 869 vP~p~--c~~~-haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~-~ 944 (1072)
T PTZ00357 869 VPPPG--CHDH-HAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVP-P 944 (1072)
T ss_pred cCCcc--cccc-chhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecC-C
Confidence 00000 0000 000112345666666666788999999988654421 11134567788888 9
Q ss_pred CceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecC---CccccCCCC---------EEEEEEEE
Q 016320 290 GTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFR---PSVRVSEGD---------DLNVSFSM 355 (391)
Q Consensus 290 ~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~---~p~~v~~g~---------~l~~~~~~ 355 (391)
++++|||++||++.|+++.. ...+.|||.|.+ ..+-+|++.+|||+ ++..++.|+ .|.+.+..
T Consensus 945 d~vlHGFAGYFdAvLYkDVt---~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~R 1021 (1072)
T PTZ00357 945 CGRCCGLAGYFSAVLYQSAT---APATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDR 1021 (1072)
T ss_pred CcceeeeeeEEEEEeecCCC---ccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeee
Confidence 99999999999999975310 012789999963 34679999999998 555566665 66666655
Q ss_pred EeCCCCCeeeEEEEEEEEeccc
Q 016320 356 TRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
..+.+.+| |||||.|.-.+
T Consensus 1022 r~~~~e~r---VwYew~v~~~~ 1040 (1072)
T PTZ00357 1022 RTSLAEQR---VWYEWSVTYGD 1040 (1072)
T ss_pred ccccccce---EEEEEEEeech
Confidence 55557888 99999986554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=191.01 Aligned_cols=290 Identities=22% Similarity=0.225 Sum_probs=205.9
Q ss_pred HhhcCChHhHHHHHHHHHhcCCCCC-----C-CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC
Q 016320 54 KEMLSDRVRMDAYFNSIFQNKHHFQ-----G-KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ 126 (391)
Q Consensus 54 ~~~l~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~ 126 (391)
..||+|..|+.+|+..|+..+...+ + ..|||||+|||+|+++++++|+..|+|+|.- +|.+.|+++..+||+.
T Consensus 36 ~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 36 LDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred HHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 4799999999999999887765432 2 3689999999999999999999999999999 9999999999999999
Q ss_pred CcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchhhc
Q 016320 127 DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDY 204 (391)
Q Consensus 127 ~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~ 204 (391)
++|++|.....++... .+.|+++.+.+..-+..|+.++++-++..+++++|...+|..++.|++++++.++..
T Consensus 116 dkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~----- 190 (636)
T KOG1501|consen 116 DKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN----- 190 (636)
T ss_pred cceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh-----
Confidence 9999999998888654 469999998888888888899999999999999999999999999999999875442
Q ss_pred cccccchhhhhh-cCcccccccc------ccCCCcchhhhhhhhcccCceeec-CCCCccccceeEEEEEcCC-C-Cccc
Q 016320 205 EGALDDWYSFLK-ETKTYYGVDM------SVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCST-A-TVDD 274 (391)
Q Consensus 205 ~~~~~~w~~~~~-~~~~~~g~dl------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~p~~~~~~dl~~-~-~~~~ 274 (391)
|+.+.. ..+...|..+ +|+--+... + ....+.+ +.-++|+++..++.+||.. . ...+
T Consensus 191 ------~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~-----d--~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~ 257 (636)
T KOG1501|consen 191 ------LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ-----D--SQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSE 257 (636)
T ss_pred ------hhccccccccccCCcccCCCccccCCCchhHH-----H--HHHhhcchhhheeecCcceeEEeecchhhhcchh
Confidence 322211 1112222221 122110000 0 0111222 2236899999999999983 1 1112
Q ss_pred ccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCC--------CCccceEEecC--CccccC
Q 016320 275 IREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--------THWGQQVFLFR--PSVRVS 344 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~--------~hW~q~~~~l~--~p~~v~ 344 (391)
. +. .+..... .+|++..+..|||++|+. ...+.+..+|.+... .||.|++++++ +...+.
T Consensus 258 ~-~~--~r~~va~-~Sg~~~~~l~wwdi~mD~------~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~i~ 327 (636)
T KOG1501|consen 258 I-EE--LRPPVAV-HSGPLRSNLLWWDISMDQ------FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNRIH 327 (636)
T ss_pred h-hh--hcCcccc-cccchhheeeeeeeeecc------CcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCcee
Confidence 2 11 2233344 789999999999999976 356778888864432 49999998887 334444
Q ss_pred CCCEEEEEEEEEeCCCCCeeeEEEEEEEEeccc
Q 016320 345 EGDDLNVSFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 345 ~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
.+...-.-+.. +-+|.++..+.++.+.
T Consensus 328 ~~ss~~~v~~~------H~~l~i~~~~h~~~~~ 354 (636)
T KOG1501|consen 328 NVSSLMTVFSY------HLWLYIYRTDHYHCHL 354 (636)
T ss_pred eccceEEEeee------eeeeEEeeeeeecccc
Confidence 44332222221 2255666666666555
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=154.44 Aligned_cols=142 Identities=23% Similarity=0.294 Sum_probs=121.1
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHH
Q 016320 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDH 115 (391)
Q Consensus 38 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~ 115 (391)
.....+|+..+..|+..+.+..-.....|++++...+...+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence 44567888888888886544445556678888777766668999999999999999999987 55689999999 99999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++++...+..+ |+++++|+++++++ ++||+|.+ .+.+.+-.+.+.+|++++|+|||||+++..
T Consensus 91 a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 91 AREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred HHHHhhccCccc-eEEEEechhhCCCCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 999999988877 99999999999998 89999996 677777778999999999999999977643
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-18 Score=151.91 Aligned_cols=144 Identities=25% Similarity=0.272 Sum_probs=82.8
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HH
Q 016320 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KM 112 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~ 112 (391)
+...-...|+..+..|+..+-+..-.....|++.+.+.....++.+|||+|||||.++..+++. + ..+|+++|+| .|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3444567888888888774333333445566666666666678899999999999999998876 3 2489999999 99
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.|+++++..+.. +|+++++|+++++++ ++||+|+| .+.+.+-.+....++++.|+|||||.+++.
T Consensus 85 L~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 85 LEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 99999999988776 599999999999987 89999997 455555556788999999999999998754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=129.68 Aligned_cols=107 Identities=29% Similarity=0.358 Sum_probs=87.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEEEEcc-c
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEW-M 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~D~Ivs~~-~ 153 (391)
|+.+|||||||+|.+++.+++. ...+|+|+|+| .|++.|++++...+..++|+++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999993 34479999999 99999999998888888899999999 5555568899999966 2
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
...+........+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2212222456788999999999999998764
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=142.65 Aligned_cols=148 Identities=20% Similarity=0.122 Sum_probs=107.4
Q ss_pred cccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H
Q 016320 35 DKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K 111 (391)
Q Consensus 35 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~ 111 (391)
.-......+|+..+..|+...-.........|++.+.+.+...++.+|||+|||+|.++..+++. +. .+|+|+|+| +
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ 109 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE 109 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 33444567899999888863222111123445555555555567889999999999999988875 42 489999999 9
Q ss_pred HHHHHHHHHHH--cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 112 MSDHARTLVKA--NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 112 ~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.|+++... .....+++++++|+++++++ ++||+|++.. .+++-.+...+++++.|+|||||.+++...
T Consensus 110 ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 110 QLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred HHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999876532 22223599999999998877 6899999843 333334678899999999999999876543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-16 Score=137.47 Aligned_cols=106 Identities=27% Similarity=0.365 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++++|||+|||-|+|+..+|+.|+ .|+|+|++ ++++.|+..+.++++. |++.+..++++... ++||+|+| .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~c---m 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTC---M 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEE---h
Confidence 6889999999999999999999997 79999999 9999999999999987 88999999988665 89999999 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
..+.+-.+...++..+.+++||||.++++..+-.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 2233445677899999999999999998876633
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=139.64 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++.+|||||||+|.++..+++.|+ +|+|||.+ +|++.|++++...+...+++++++|++++..+ ++||+|+|.-
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-- 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-- 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh--
Confidence 3567999999999999999998887 79999999 99999998877766655699999999988655 7899999932
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.+-.+...++..+.++|||||.+++...
T Consensus 207 -vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 207 -VIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred -HHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 233334567899999999999999987744
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-15 Score=133.33 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=108.2
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHH
Q 016320 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a 116 (391)
...+|+..+..|+...-.........|++.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 355777777777764333333345666677777776667899999999999999999876 3 3489999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++++..++. +++++++|+.+++++ ++||+|++.. .+.+......+++.+.++|+|||.+++.
T Consensus 87 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 87 RQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred HHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9998887774 599999999887765 7899999743 2333345678899999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=128.39 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.+++...++.++||||||.|..++++|+.|. .|+|+|.| ..++.+++.++..+++ |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556788999999999999999999999 69999999 8999999999999987 99999999998888899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|..+..++..+ ..+.+++.+...++|||++++.
T Consensus 99 ~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEE
Confidence 997666666655 5788999999999999997763
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=130.46 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=89.1
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++++.+++.+ +++...|+.++.++++||+|+|.
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~ 102 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILST 102 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEe
Confidence 33445678999999999999999999987 79999999 99999999999888854 89999999887777889999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+.+++. ......++..+.++|+|||.++.
T Consensus 103 ~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 103 VVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cchhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 5433332 33578899999999999998653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=126.61 Aligned_cols=101 Identities=28% Similarity=0.375 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..++.+|||+|||+|.+++.++..+ ..+|+|+|.| .|++.++++++++++.+ ++++++|+.++...++||+|+|+.+
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~ 118 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRAL 118 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhh
Confidence 3458899999999999999988764 3589999999 99999999999988865 9999999998755589999999641
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..++.+++.+.++|+|||.+++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 135567888899999999998653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-15 Score=130.73 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=87.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++. +++...|+....++++||+|
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEE
Confidence 33344445668999999999999999999987 79999999 9999999998888875 78888888766666789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++..+.+.+. ......+++.+.++|+|||++++
T Consensus 99 ~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 99 FSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEecccccCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 9965433332 23577889999999999998554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=122.00 Aligned_cols=105 Identities=32% Similarity=0.430 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
++.+|||+|||+|.++..+++ . ...+|+|+|+| .|++.|+++++.+++. +++++++|+.+++ ++++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 568999999999999999994 3 24589999999 9999999999999998 5999999999976 447999999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+. .+......+++.+.++|+++|++++....
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 32 33345678899999999999999876554
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=123.80 Aligned_cols=100 Identities=30% Similarity=0.369 Sum_probs=85.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++. ...+|+++|.+ .|++.|+++++.+++++ ++++++|+.++...++||+|+++.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc--
Confidence 3789999999999999988874 44589999999 99999999999999876 9999999988766678999998542
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..++.++..+.++|+|||.+++...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2467789999999999999886643
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=134.84 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=88.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++. ++ +|+|||+| .|++.|+++++.+++.++++++++|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 46789999999999999999986 55 89999999 99999999999988877899999999998766 79999998332
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
. .+-.+...++.++.++|||||.+++..
T Consensus 196 ~---~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 G---EHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred h---hccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2 222346788999999999999988753
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=122.41 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=110.2
Q ss_pred hhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech
Q 016320 41 ANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT 110 (391)
Q Consensus 41 ~~y~~~~~~~~~~~~~l~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~------~~V~avD~s 110 (391)
..-|++++..|+. ++|... ...|.+.....+...++.+|||++||||-++..+.+. +. ++|+.+|+|
T Consensus 63 ~~vF~~vA~~YD~---mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din 139 (296)
T KOG1540|consen 63 HHVFESVAKKYDI---MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN 139 (296)
T ss_pred HHHHHHHHHHHHH---HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC
Confidence 3456666666655 555443 3457777777777788899999999999999988876 33 689999999
Q ss_pred -HHHHHHHHHHHHcCCCCc--EEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 111 -KMSDHARTLVKANNLQDV--VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+|+..+++++++.++... +.++.+|.++++++ ..||..++ .+.+-+-.+++..+++++|+|||||+|.
T Consensus 140 p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 140 PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999988888765 99999999999998 89999985 5555555668889999999999999876
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=133.35 Aligned_cols=109 Identities=32% Similarity=0.422 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
..-.+++.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+. ...+. ..
T Consensus 149 ~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~ 223 (295)
T PF06325_consen 149 RLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VE 223 (295)
T ss_dssp HHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CC
T ss_pred HHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-cc
Confidence 3334455555 35778999999999999999999999999999999 8999999999999999877663 22222 12
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|++|++... +..+...+.++|+|||.+|++
T Consensus 224 ~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 224 GKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp S-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred ccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 89999999886543 456778888999999999875
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=124.11 Aligned_cols=104 Identities=29% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.|+++++.|++.+ ++++..|..+...+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6689999999999999999998765 79999999 99999999999999988 999999987754458999999987522
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEc
Q 016320 156 FLLR--ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~--e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.... ...+..++....++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 2221 12467888889999999999864
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=110.39 Aligned_cols=93 Identities=29% Similarity=0.424 Sum_probs=75.7
Q ss_pred EEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCc
Q 016320 83 LDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE 160 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e 160 (391)
||+|||+|..+..+++.+..+|+++|++ ++++.++++....+ +.++++|+++++++ ++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999955589999999 99999998776543 67999999999887 899999995433333
Q ss_pred chHHHHHHHHhccccCCeEEEc
Q 016320 161 SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.....+++++.|+|||||.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4688999999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=131.40 Aligned_cols=109 Identities=31% Similarity=0.380 Sum_probs=86.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+++.+.. .++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++...++.-..+.......++||
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4444443 4789999999999999999999999999999999 889999999999998753333333333333336999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+||+|.+.. .+..+...+.++|||||++|.+-
T Consensus 232 vIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 232 VIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 999987543 35577888999999999999764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=129.40 Aligned_cols=115 Identities=27% Similarity=0.322 Sum_probs=87.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+.+...+|.+|||||||.|.+++.+++. |+ +|+||.+| +..+.|++.++..|+.+++++...|.++++ .+||
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD 129 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFD 129 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCC
Confidence 4556667789999999999999999999998 87 79999999 999999999999999999999999999875 4899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.|+|-.+..... ....+.+++.+.++|+|||.++....+.
T Consensus 130 ~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 130 RIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 999943322222 2357889999999999999998765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-14 Score=130.03 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=86.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.++..+++.|. +|+++|+| +|++.|++++...++.++++++++|+.++. .+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3567999999999999999999986 79999999 999999999999888777999999998864 2478999998543
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+ .....++..+.++|||||.+++.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2222 34567899999999999998754
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=131.95 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=88.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+...+...++++|||||||+|.++..+++.|+.+|+|+|+| .|+..++...+..+...++.++.+|+++++.+++||+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~ 192 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT 192 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence 445555557789999999999999999999998889999999 7876655444333333459999999999877789999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|..+ +.+..++..++..+++.|+|||.+++.
T Consensus 193 V~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999432 223345778899999999999999875
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=127.73 Aligned_cols=121 Identities=22% Similarity=0.330 Sum_probs=92.0
Q ss_pred ChHhHHHHHHHHHhcCCC-CC------CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc--
Q 016320 59 DRVRMDAYFNSIFQNKHH-FQ------GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-- 128 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~-~~------~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-- 128 (391)
+..|....++-+...... .+ |.+|||+|||+|+++..+|+.|+ .|+|||.+ +|++.|++..+.+...+.
T Consensus 63 n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~ 141 (282)
T KOG1270|consen 63 NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAI 141 (282)
T ss_pred cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhcccc
Confidence 455555555555544421 23 47899999999999999999998 79999999 999999999666554443
Q ss_pred ---EEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 129 ---VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 ---v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++.+.+++.+. ++||.|+| ...+.+-.++..++..+.++|||+|.+++...
T Consensus 142 ~y~l~~~~~~~E~~~--~~fDaVvc---sevleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 142 AYRLEYEDTDVEGLT--GKFDAVVC---SEVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ceeeehhhcchhhcc--cccceeee---HHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 777888877765 56999999 22344445788999999999999999886643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=129.09 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.++...+...++++|||||||+|.++..++..|+.+|+|+|+| .|+..++...+..+...++.++..++.+++...+||
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD 190 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence 3455555667889999999999999999998888889999999 888765443332222345889999999887667899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|+|..+.++ -..+..++..+++.|+|||.+++..
T Consensus 191 ~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999543222 2456778999999999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-14 Score=120.88 Aligned_cols=136 Identities=29% Similarity=0.403 Sum_probs=118.4
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016320 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 52 ~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
.|.++|.|..|...|..+|.+.. ...+.|+|+|+|++++.+|++ +++|+|||.+ ...++|.+++.-+|..+ ++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~e 83 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-WE 83 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-eE
Confidence 45677999999999999998864 368999999999999999998 7899999999 88999999988888765 99
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016320 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 131 ~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 195 (391)
++.+|.++..+ +..|+|+|+.+...+..|...+ ++.++..+|+.++.+||.....-+.|++..
T Consensus 84 vv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 84 VVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 99999999988 7899999999988888776544 566666799999999999998888888653
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-14 Score=125.43 Aligned_cols=108 Identities=28% Similarity=0.413 Sum_probs=90.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Ivs~ 151 (391)
....+|||||||+|.+++++|++ ...+|++||++ .+++.|+++++.|+++++|+++++|+.++... .+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34689999999999999999998 54689999999 99999999999999999999999999987533 569999999
Q ss_pred cccccccCc----------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 152 WMGYFLLRE----------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e----------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+. |+-... ..++.+++...++|||||.+.+...
T Consensus 123 PP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 84 332221 2477888999999999999876543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=125.65 Aligned_cols=116 Identities=30% Similarity=0.312 Sum_probs=97.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.++..+|.+|||||||-|.+++.+|+. |. +|+|+++| ++.+.+++.++..|++.+|+++..|.+++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--ccc
Confidence 45666678889999999999999999999998 56 79999999 999999999999999988999999999986 459
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
|-|||--|-.....+ ..+.++..++++|+|||.++....+.
T Consensus 139 DrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 139 DRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecC
Confidence 999994433333333 47889999999999999988665443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=123.39 Aligned_cols=144 Identities=24% Similarity=0.266 Sum_probs=105.7
Q ss_pred ccccchhhhhhhhhhhhhH-hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-H
Q 016320 36 KEVDFANYFCTYAFLYHQK-EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-K 111 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~-~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~ 111 (391)
+..+...+|+.++..|+.. .... ......+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLS-FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHh-cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 3445577888887777641 1111 11223344444444444567899999999999999999886 3689999999 9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 112 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 112 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++.+++++..+++..+++++.+|+.+...+ ++||+|++. +.+.+-..+..++..+.++|+|||.+++.
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~---~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA---FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe---cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 9999999987766666799999999887654 789999973 33334445788899999999999998754
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=129.00 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|.| .+++.++++++.+++. +++...|+....++++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~--v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLN--IRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEechhcccccCCccEEEEcchhh
Confidence 4556999999999999999999987 79999999 9999999999988883 899999988776678999999976544
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++.. .....++..+.++|+|||++++
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEE
Confidence 4432 3577889999999999998654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=123.15 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=84.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+++++++ ++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCc
Confidence 34444555444568999999999999999988876 79999999 99999887642 157889999988766 68
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+|... +.+..++..++.++.++|+|||.+++.
T Consensus 104 fD~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 104 FDLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 999998542 334446788999999999999999865
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=123.76 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=87.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++..++..++++++++|+.+++++ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 36789999999999999888772 23489999999 99999999999888877799999999987654 699999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+++.. .....+++.+.+.|||||.+++..
T Consensus 134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4444432 245788999999999999998764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-13 Score=109.21 Aligned_cols=104 Identities=34% Similarity=0.468 Sum_probs=84.8
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEEEEcccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~Ivs~~~~ 154 (391)
|.+|||+|||+|.+++.+++.+..+++++|++ ..++.|+.++..+++.++++++++|+.+.. + .++||+|++++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP- 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP- 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC-
Confidence 46899999999999999999985699999999 899999999999999888999999998875 3 389999999874
Q ss_pred ccccC------cchHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLR------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.... ......+++.+.++|+|||.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 32211 123567889999999999998754
|
... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=115.37 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=83.0
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.++...-.++||+|||.|.++..+|... .+++++|+| ..++.|+++... .+ .|++++.|+.+..++++||+||+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCCCCCeeEEEEe
Confidence 3444455789999999999999999885 489999999 899999988764 33 499999999998777999999886
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
-+.|++.....+..+++.+...|+|||.+|+..
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 668888766678889999999999999999864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=85.0
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCccc
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVD 146 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D 146 (391)
...+...++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.+++.+ ++++.+|.... ..+++||
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCC
Confidence 33344455789999999999999999987 34589999999 99999999999888764 89999887652 2237899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|++... ......+++.+.++|+|||.+++..+
T Consensus 91 ~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGS------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCc------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9998431 12346889999999999999987643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=122.49 Aligned_cols=100 Identities=30% Similarity=0.425 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++++|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 4678999999999999999999988899999999 99999999999999987788887764332 24789999997642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..++..+.++|+|||.++++
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 23456788899999999999865
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=125.97 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=87.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcc
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+....+.+|||+|||+|.+++.+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.....+.+|
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~f 299 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 299 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCE
Confidence 4444444445699999999999999999874 3489999999 9999999999988754 2589999988654334689
Q ss_pred cEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+|++..+... .......++....++|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999987433221 1223567888899999999998766
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=106.46 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=74.9
Q ss_pred EEEECCcccHHHHHHHHcC---C-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc-c-c
Q 016320 82 VLDVGTGSGILAIWSAQAG---A-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE-W-M 153 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g---~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~-~-~ 153 (391)
|||+|||+|..+..+++.. . .+++++|+| +|++.+++.....+. +++++++|+.+++.. ++||+|+|. . +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998873 2 589999999 999999999988766 499999999997644 799999993 3 3
Q ss_pred cccccCcchHHHHHHHHhccccCCe
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
.+ .....+..+++.+.++|+|||
T Consensus 79 ~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC--CCHHHHHHHHHHHHHHhCCCC
Confidence 33 344568899999999999998
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=122.03 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=81.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. .++++++|+.++...++||+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~ 92 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDV 92 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceE
Confidence 3444555677899999999999999998872 2379999999 999988652 27899999988754479999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|..+.+++ .+...++..+.++|||||.+++.
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9995533332 35678899999999999998875
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=116.89 Aligned_cols=105 Identities=30% Similarity=0.342 Sum_probs=84.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.++.+|+++|++ .+++.++++++.+++. ++++++|+.+....++||+|++++ .
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~np-P 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNP-P 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECC-C
Confidence 35678999999999999999998877689999999 9999999999888763 899999987753347899999986 2
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e-------------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|....+ ..+..+++.+.++|||||++++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 332211 12456788889999999998854
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=116.35 Aligned_cols=136 Identities=24% Similarity=0.233 Sum_probs=99.9
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHH
Q 016320 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHART 118 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~ 118 (391)
+.|+..+..|+..++.........+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .+++.+++
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~ 82 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKK 82 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHH
Confidence 456666666666543322222334555555555455788999999999999999988865 389999999 89898888
Q ss_pred HHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 119 LVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 119 ~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.. ...+++++.+|+.+...+ ++||+|++. +.+.+...+..+++.+.++|+|||.++..
T Consensus 83 ~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~---~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 83 KSE---LPLNIEFIQADAEALPFEDNSFDAVTIA---FGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred Hhc---cCCCceEEecchhcCCCCCCcEEEEEEe---eeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 765 334589999999887654 689999973 33344456778999999999999998864
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=113.80 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++++.++.. ++++.+|+.+.. +++||+|++++..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc-CCcccEEEECCCC
Confidence 34567899999999999999999887 89999999 9999999999988764 899999987654 4689999997632
Q ss_pred ccccC------------------cchHHHHHHHHhccccCCeEEEccc
Q 016320 155 YFLLR------------------ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~------------------e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+.... ...+..+++.+.++|+|||.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 21111 0124677888999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=124.17 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=93.4
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+..+..|++ ++......+.+.+.+.+.... .++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++
T Consensus 79 ~y~~lA~~YD~--~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 79 FYRFLSIVYDH--IINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred EccceeeecCC--CeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh
Confidence 56666777776 122222233444433333222 35689999999999999888775 44589999999 999999887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... .+++++.+|+.+++++ +.||+|++... +.+..+...+++++.++|+|||.+++.
T Consensus 157 ~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~---L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 157 EPL----KECKIIEGDAEDLPFPTDYADRYVSAGS---IEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred hhc----cCCeEEeccHHhCCCCCCceeEEEEcCh---hhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 642 2388999999988765 68999998432 222224567899999999999998753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=119.57 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|+++++..+...+++++++|+.+++++ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 36679999999999999988875 23479999999 99999999988776666699999999988764 689998854
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+++.. .....+++.+.+.|+|||.+++...
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 3333322 2457889999999999999987653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=118.97 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=89.1
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016320 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
....|+..+..|+....+........|++.+.+.+. ..++.+|||||||||.++..+++....+|+|+|+| +|++.|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a 90 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN 90 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence 356788888888764322111112233333322211 12467999999999999999988732389999999 999998
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCe
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
++. ..++++|+++++++ ++||+|++.. .+.+-.+++.+++++.|+|||..
T Consensus 91 ~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 91 LVA---------DDKVVGSFEALPFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Hhc---------cceEEechhhCCCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 753 23568899988876 7999999843 34444567889999999999953
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=121.00 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=86.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|..+..+++....+|+++|+| .|++.|+++... .++++++.+|+.+.+++ ++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 33445567789999999999999988877522389999999 999999987654 24599999999887766 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.....+. .......+++.+.++|||||.+++...
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9983211111 112567899999999999999987543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=119.82 Aligned_cols=107 Identities=26% Similarity=0.301 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.+++.++++++++|+.+...+++||+|+|++. |
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP-y 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP-Y 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC-C
Confidence 45789999999999999999863 3489999999 9999999999999988789999999865322358999999863 2
Q ss_pred ccc-----------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
... ++ .....++..+.++|+|||.+++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 11 1235678888899999999987654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=113.84 Aligned_cols=109 Identities=28% Similarity=0.277 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
....+.+.+...++.+|||+|||+|.++..+++. + ..+|+++|.+ ++++.|+++++.+++.++++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 3444555555567789999999999999888875 2 3489999999 99999999999998877799999999774333
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+||+|++.... ..+...+.+.|+|||++++.
T Consensus 140 ~~~fD~Ii~~~~~---------~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAA---------STIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCc---------chhhHHHHHhcCcCcEEEEE
Confidence 689999985421 12234567889999998753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=118.10 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=85.0
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
++|||||||+|.++..+++.. ..+|+++|+| .+++.|++++...++.++++++..|+.+.+.+++||+|++..+.+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~- 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH- 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh-
Confidence 479999999999999988863 3489999999 9999999999999998889999999976655688999998432222
Q ss_pred cCcchHHHHHHHHhccccCCeEEEccc
Q 016320 158 LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
......+++.+.++|+|||.+++..
T Consensus 80 --~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 --IKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2346789999999999999998654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-12 Score=110.80 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=84.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||+|||+|.+++.+++.+ ..+|+++|++ .+++.|+++++.+++.+ ++++.+|... .++++||+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~-~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI-ELPGKADA 100 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh-hcCcCCCE
Confidence 3344444577899999999999999998874 3589999999 99999999999888754 9999998753 34578999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++.... ..+..+++.+.++|+|||.++..
T Consensus 101 v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 101 IFIGGSG------GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred EEECCCc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 9984321 13567788889999999998864
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=119.80 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=83.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++..+++||
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD 95 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD 95 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence 3444445567789999999999999998876 34589999999 9999988764 23889999998876557999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|....+ +-.+...++..+.++|+|||.+++.
T Consensus 96 ~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999954322 2234678899999999999998875
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=112.26 Aligned_cols=107 Identities=23% Similarity=0.350 Sum_probs=86.2
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcc
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKV 145 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 145 (391)
...+...++.+|||+|||+|.+++.+++. + ..+|+++|.+ .+++.|+++++.+++.++++++.+|..+. ...++|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 34455678899999999999999998875 3 3589999999 99999999999998766799999998764 223689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|.|++.. ....+..+++.+.++|+|||.++..
T Consensus 113 D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 113 DRIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CEEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 9999742 1124677899999999999998854
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=119.14 Aligned_cols=105 Identities=32% Similarity=0.392 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
..++.+|||||||+|..++.+++. +. .+|+++|++ .|++.|+++....++. +++++.+|+++++++ +.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEc
Confidence 457899999999999988877765 54 379999999 9999999999888875 489999999988765 689999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.+. ......+++.+.++|||||.+++..
T Consensus 154 ~v~~~---~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINL---SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccC---CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 54332 2345678999999999999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=117.17 Aligned_cols=94 Identities=39% Similarity=0.524 Sum_probs=77.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+.+.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-
Confidence 4678999999999999999998888789999999 99999999999998865555544432 79999996532
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..++..+.++|||||.+++.
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13456788899999999999875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=113.90 Aligned_cols=106 Identities=24% Similarity=0.193 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ .+++.|+++++.+++.+ ++++++|..+... ..
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence 3454555567889999999999999999988742 369999999 99999999999999854 9999999976533 26
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|+++... ..+.+.+.+.|+|||+++..
T Consensus 146 ~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 89999975321 12334566789999998754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=119.02 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=83.7
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
.+|||+|||+|.+++.+++.. ..+|+++|+| .+++.|+++++.+++.++++++++|+.+...+++||+|+|++. |..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP-yi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP-YVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC-CCC
Confidence 689999999999999998873 3489999999 9999999999999988789999999866332368999999862 211
Q ss_pred c-----------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 158 L-----------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 158 ~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
. ++ .....++..+.++|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 11 1235678888899999999987644
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=108.89 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=88.1
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE----ccc
Q 016320 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS----EWM 153 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs----~~~ 153 (391)
+|||||||.|.+...+++.|.. ..+|+|.| ++++.|+.+++++++++.|+|.+.|+.+.. ++++||+|+- +.+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 8999999999999999998764 49999999 999999999999999999999999998854 3489999985 222
Q ss_pred ccccc-CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 154 GYFLL-RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 154 ~~~l~-~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.-... ...-+..++..+.++|+|||++++..+++..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 11111 1122456788889999999999998887654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-12 Score=112.22 Aligned_cols=106 Identities=25% Similarity=0.229 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|+++++..++.+ ++++++|......+ .
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCcCC
Confidence 34445555678899999999999999988876 32 489999999 99999999999988754 99999998765433 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|++... . ..+...+.+.|||||+++..
T Consensus 145 ~fD~I~~~~~---~------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAA---G------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCC---c------ccchHHHHHhhCCCcEEEEE
Confidence 8999998431 1 12233456689999998754
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-12 Score=116.74 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 63 MDAYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 63 ~~~~~~~i~~~~-~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
++.+...+...+ ...+..+|||+|||+|.+++.+++... .+|+|+|+| .+++.|+++++.+++.++++++++|+.+.
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc
Confidence 445554443332 122236899999999999999998743 489999999 99999999999999877799999998764
Q ss_pred CCCCcccEEEEcccccccc-----------Cc------------chHHHHHHHHhccccCCeEEEccccee
Q 016320 140 VLPEKVDVIISEWMGYFLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
....+||+|+|++. |... ++ .....++..+.++|+|||.+++.....
T Consensus 178 ~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 178 LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 32248999999752 2211 11 134567788889999999998776543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=112.13 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCC--CC-CcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIV--LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~-~~~D~Ivs~ 151 (391)
++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++++.+++. +++++++|+ ..+. ++ +.||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999998876 33479999999 9999999999988874 499999999 6654 43 789999985
Q ss_pred ccccccc--C---cchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLL--R---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~--~---e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....... + ......+++.+.++|+|||.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 3221110 0 012467899999999999999865
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=111.56 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=86.8
Q ss_pred HHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 66 YFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
+.+.+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+| .|+..|+++...++..+++++.++|+.++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 3344444433 35678999999999999999998876 79999999 999999999988877666999999998875
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|++..+-+... ...+..++..+.+++++++++.+.
T Consensus 118 ~~fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CCcCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7899999832222221 234667788888888877766543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=126.11 Aligned_cols=107 Identities=24% Similarity=0.239 Sum_probs=84.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++.. +...+++++++|+.+.+++ ++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 3345678999999999999998888633379999999 99999988765 3344699999999888765 689999994
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ +.+-.+...++..+.++|||||.+++...
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 32 22223567899999999999999987643
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-12 Score=125.92 Aligned_cols=108 Identities=19% Similarity=0.346 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs 150 (391)
..++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++....+. ++.++++|+.+++ ++ ++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998888775 34489999999 999999988766553 3889999998865 33 78999998
Q ss_pred cccccccc----------CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLL----------RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~----------~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+.+.+. ....+..+++++.++|||||.+++...
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65332211 123567889999999999999987543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=113.72 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+...+...+|++|||||||.|..+..++++|++.|+|+|.+ ......+......+.+..+.++...+++++..+.||+
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDT 185 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCE
Confidence 455566678999999999999999999999999999999999 5444433333333333335555566777765689999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+| |+-+-+ ....-..|..++..|+|||.+|+.
T Consensus 186 VF~--MGVLYH-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 186 VFS--MGVLYH-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEE--eeehhc-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 999 443332 334556788899999999998855
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=118.55 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=84.5
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
...+......+|||+|||+|.++..+++.+. .+|+++|+| .+++.|+++++.+++. .+++..|+... .+++||+|
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fDlI 265 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFDMI 265 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCccEE
Confidence 3333333345899999999999999998743 489999999 9999999999999876 57778887653 35789999
Q ss_pred EEccccccccC--cchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~--e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|++.-+.... ......++..+.++|+|||.+++.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 99874322111 134678899999999999998764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.4e-12 Score=121.24 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=89.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||+|||+|.+++.++..|+.+|+++|.| .+++.|+++++.|++. ++++++++|+.++. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3578999999999999998887788899999999 9999999999999986 46999999998752 135899999
Q ss_pred EccccccccCcc-------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 150 SEWMGYFLLRES-------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+++.. +..... ....++....++|+|||.++.+.++...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 99853 332221 2344555677999999999987665443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-12 Score=107.12 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=80.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCC-CC-CcccEEEEccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIV-LP-EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~-~~~D~Ivs~~~~~ 155 (391)
..||++|||||..-.+.--....+|+++|++ .|-+.|.+.++++...+ ++ |++++.++++ ++ .++|+||+- .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~T---l 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCT---L 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEE---E
Confidence 4689999999987655543333489999999 99999999998885544 65 9999999987 44 899999994 4
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++...+....|+++.|+|+|||++++-
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4555567788899999999999998864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=110.44 Aligned_cols=117 Identities=23% Similarity=0.274 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
..+++.+.+.+...++.+|||+|||+|.++..+++.. ..+|+++|.+ .+++.|+++... ...+++++..|+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC
Confidence 3445555566666778999999999999999988863 3589999999 899999887332 2345899999998876
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++ ++||+|++..+ +.+..+...+++.+.++|+|||.+++...
T Consensus 83 ~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 55 78999998433 22223567889999999999999887653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-13 Score=105.11 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=59.8
Q ss_pred EEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEEccccccc
Q 016320 83 LDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~Ivs~~~~~~l 157 (391)
||||||+|.++..+++. ...+++++|+| .|++.|+++.......+ ...+..+..+ ...+++||+|++..+-+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888887 33489999999 99988888888876543 3344433333 2223699999984433333
Q ss_pred cCcchHHHHHHHHhccccCCeEE
Q 016320 158 LRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
.++..+++.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=107.06 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=80.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.+++.++..++.+|+++|.+ .+++.|+++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4568999999999999997766677799999999 9999999999999876 4999999987642 1257999999985
Q ss_pred cccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016320 154 GYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
|. .+....+++.+. .+|+|+++++++..
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223344455443 45889998886644
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-12 Score=107.41 Aligned_cols=107 Identities=25% Similarity=0.262 Sum_probs=75.8
Q ss_pred HHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-C
Q 016320 65 AYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-L 141 (391)
Q Consensus 65 ~~~~~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~ 141 (391)
.+.+.+.+... ..++.+|||||||+|.++..+++.|. +|+++|++ .+++. . . +.....+..... .
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----~-~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----N-VVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----T-SEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----h-hhhhhhhhhhhhcc
Confidence 33444444433 46778999999999999999999988 89999999 77766 1 1 233332222322 2
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++||+|+|..+ +.+-.++..+++.+.++|||||.+++....
T Consensus 76 ~~~fD~i~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDV---LEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESS---GGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHH---HhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 389999999433 333336889999999999999999876443
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=116.98 Aligned_cols=115 Identities=24% Similarity=0.276 Sum_probs=91.9
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
...++.......++.+|||+|||+|.+++.++..++ +|+|+|++ .|+..|+++++.+++.+ +.++++|+.+++.+ +
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444444456788999999999999998888776 79999999 99999999999999887 89999999998765 7
Q ss_pred cccEEEEcccccccc----Cc---chHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLL----RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~----~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|++++. |... .+ .....+++.+.++|+|||.++..
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 8999999863 2211 11 22577889999999999987754
|
This family is found exclusively in the Archaea. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=117.45 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=91.3
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+.....++.+.+.+...+. ++.+|||+|||+|.+++.+++. ...+|+|+|+| .|++.|+++++.++. +++++++
T Consensus 232 LIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred cCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 3344456666666655432 4569999999999999988875 44589999999 999999999998875 4999999
Q ss_pred ccccCCC--CCcccEEEEccccccccCc-----------------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 135 SVEDIVL--PEKVDVIISEWMGYFLLRE-----------------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~--~~~~D~Ivs~~~~~~l~~e-----------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+.+... .++||+|+|++. |....+ .....+++.+.++|+|||.+++...
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred chhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9876433 358999999873 322111 1234666777889999999876544
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=102.52 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
..+......+...++.+++|||||||.+++.++..+ ..+|+|+|.+ ++++..++|+++.+.++ ++++.++.-+.-..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcC
Confidence 334445566777899999999999999999999764 4489999999 99999999999999765 99999999876333
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.++|.|+. +-. ..++.+++.+...|||||+++....+
T Consensus 100 ~~~~daiFI---GGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 100 LPSPDAIFI---GGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CCCCCEEEE---CCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 37999985 222 34678899999999999999976554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-11 Score=108.25 Aligned_cols=135 Identities=28% Similarity=0.340 Sum_probs=98.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
+++.+..++....+ +..+.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .+++.+++++.
T Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 12 WWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 44444444443322 4556555555555432234578999999999999999988876 69999999 89999999888
Q ss_pred HcCCCCcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.++.. ++++...|+.++... ++||+|++.. .+.+......+++.+.++|+|||.+++..
T Consensus 89 ~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 89 KDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 77653 388999998876543 7899999843 23333456788999999999999987643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=111.35 Aligned_cols=115 Identities=27% Similarity=0.317 Sum_probs=88.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
-+.+.+.+....+.+|||+|||.|.+++.+++.. ..+|+-+|.| .+++.|+++++.|++++. .++..|..+-- .++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-ccc
Confidence 3456666666666699999999999999999985 4589999999 899999999999999864 67777765533 359
Q ss_pred ccEEEEccccccccCc--chHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e--~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|||++.-+-.... .....++....+.|++||.+.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 9999999843322111 12347888899999999987654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=109.42 Aligned_cols=111 Identities=29% Similarity=0.386 Sum_probs=87.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 144 (391)
+.+.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+.. ++++..++.++. .+++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcCCC
Confidence 3454444456788999999999999999998876 69999999 8999999888777663 788888888764 3378
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++.. .+.+......++..+.++|+|||.+++..
T Consensus 115 fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCME---MLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhh---HhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999843 23333456788999999999999988653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=129.36 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=88.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC--CCCcccEEEEccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999999999999889999999 9999999999999997 57999999987642 2468999999874
Q ss_pred cccccC---------cchHHHHHHHHhccccCCeEEEcccc
Q 016320 154 GYFLLR---------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~---------e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++... ......++..+.++|+|||.++++.+
T Consensus 618 -~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 -TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32221 12345677778899999999887644
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=108.45 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 141 (391)
.++.+|||+|||.|..+.++|++|. +|+|+|+| .+++.+.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3567999999999999999999999 69999999 888865432 221 2348999999998764
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ++||.|+.......+ .......+++.+.++|||||.+++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2 679999874322222 3345677899999999999976543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=117.73 Aligned_cols=108 Identities=26% Similarity=0.293 Sum_probs=84.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+.+...++.+|||||||+|.++..+++. |. +|+|+|+| ++++.|+++++ ++. +++...|..++ +++||
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l--~~~fD 230 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL--NGQFD 230 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc--CCCCC
Confidence 3444455667899999999999999999886 55 89999999 99999998874 332 88888898776 47899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.|+|..+..... ...+..+++.+.++|||||.+++..
T Consensus 231 ~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999854322221 2346788999999999999988753
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=105.24 Aligned_cols=105 Identities=34% Similarity=0.465 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
.++++|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++..+++.++ +.++++|+.+...+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p- 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP- 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC-
Confidence 4678999999999999999998864 89999999 999999999998888654 8899999877443468999998653
Q ss_pred cccc-------------------CcchHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLL-------------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~-------------------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... ....+..++..+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2110 0112566788999999999988754
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=107.59 Aligned_cols=103 Identities=22% Similarity=0.211 Sum_probs=78.6
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCccc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVD 146 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D 146 (391)
.+...++.+|||+|||+|.++..+++. +..+|+|+|.+ .|++.+.++++.. .+|.++.+|+.+. .++++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 355668899999999999999999987 33479999999 8999887776643 3389999998752 2346799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+++... ......++..+.++|||||.+++.
T Consensus 144 ~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99985321 112234678899999999998875
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=122.33 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=82.9
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|+++++.+++.++++++++|+.+....++||+|+|++. |.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPP-Yi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPP-YI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCC-CC
Confidence 468999999999999988765 44589999999 9999999999999988789999999865332368999999762 22
Q ss_pred ccC------------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 157 LLR------------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
... | .....++..+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 211 1 1234567778899999999987644
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=104.12 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=84.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~ 143 (391)
..+...+...++.+|||+|||+|.++..+++. ...+|+++|.+ .+++.|+++++.+++.+ ++++.+|+.+. . ...
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhCCC
Confidence 34455555567789999999999999998875 33589999999 99999999999988854 99999998652 1 223
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+|.++.+. ...+..+++.+.++|+|||.++....
T Consensus 109 ~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 467766532 12456788999999999999887643
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=106.40 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|+++++..++.+ ++++++|..+...+ ++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCc
Confidence 3444555566789999999999999998888754 89999999 99999999999988866 99999998654223 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|++... ...+.+.+.+.|+|||.++..
T Consensus 146 D~I~~~~~---------~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAA---------APEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CEEEEccC---------chhhhHHHHHhcCCCcEEEEE
Confidence 99998431 122344567889999998754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=111.12 Aligned_cols=122 Identities=26% Similarity=0.342 Sum_probs=88.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..++.+.+.+......... +|||||||||.+++.++..+. ..|+|+|+| .+++.|++++..+++ .++.++++|..+
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~ 171 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE 171 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc
Confidence 3455555554422222222 799999999999999999864 389999999 999999999999998 556777776554
Q ss_pred CCCCCcccEEEEccccccccC-----------c------------chHHHHHHHHhccccCCeEEEcccce
Q 016320 139 IVLPEKVDVIISEWMGYFLLR-----------E------------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 139 ~~~~~~~D~Ivs~~~~~~l~~-----------e------------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
- ..++||+||||+ .|.... | .....++....++|+|||.+++....
T Consensus 172 ~-~~~~fDlIVsNP-PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 172 P-LRGKFDLIVSNP-PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred c-cCCceeEEEeCC-CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 2 235999999987 343322 1 13456677788999999988876553
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-11 Score=112.13 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=89.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.+.+.....++.+|||||||+|.++..+++.. ..+++++|...+++.++++++..++.++|+++.+|+.+..++ .+|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCC
Confidence 344444545566899999999999999999874 347999998788999999999999988999999999875554 479
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|++..+.+.. .+.....+++.+.+.|+|||++++...
T Consensus 218 ~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98753222222 222346789999999999999987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-11 Score=108.61 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHH-HHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 78 QGKTVLDVGTGSGIL-AIWSA-QA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~l-s~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
++++|+|||||.|.+ ++.++ ++ ...+++++|.+ ++++.|++.++. .++.++|+|..+|+.+.... ++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998754 34444 33 34479999999 999999999964 88888999999999886433 789999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.++- ......+++.+.+.|+|||.++...+
T Consensus 203 ALi~~d--k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 ALVGMD--KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccc--cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 432221 13568899999999999999997753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=121.26 Aligned_cols=113 Identities=21% Similarity=0.381 Sum_probs=86.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-C
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++. ++...+++++++|+.. ++++ +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 3444555555678999999999999999998854 89999999 899876553 2223458999999964 3444 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|+|..+.+++.. ..+..+++.+.++|||||++++...
T Consensus 103 ~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8999999765444433 2467889999999999999987654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=99.11 Aligned_cols=76 Identities=38% Similarity=0.501 Sum_probs=67.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
......+++|+|+|||||.|++.++-.|+++|+|+|++ ++++.+++++.+ +...|+++.+|+.++. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 44567889999999999999999999999999999999 999999999998 3345999999999986 569999998
Q ss_pred c
Q 016320 152 W 152 (391)
Q Consensus 152 ~ 152 (391)
+
T Consensus 116 P 116 (198)
T COG2263 116 P 116 (198)
T ss_pred C
Confidence 6
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=105.69 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~Ivs~ 151 (391)
...+|||||||+|.++..+++.. ..+|+|+|++ .+++.|++++...++. +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 45689999999999999888873 3479999999 9999999999988886 4999999998653 33 589999985
Q ss_pred cccccccC-----cchHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~-----e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
........ .-....++..+.++|||||.+++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 42211110 0112568899999999999987653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=114.86 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCCCcccEEEEc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++++..+. ...+++...|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3578999999999999999999886 79999999 999999998876421 12478988998765 4789999984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+..++..+ ....++..+.+ +.++|.++
T Consensus 220 ~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 322222222 23455666654 45666655
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=109.36 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=88.8
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|++++. +....+++++.+|+.+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE 169 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence 3445556655544444567899999999999999999874 4589999999 99999999987 3344569999999865
Q ss_pred CCCCCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcc
Q 016320 139 IVLPEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~~~~D~Ivs~~~~~~l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+++||+|++++. |.... + .....++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 433478999999763 22110 0 12356677778999999998874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=107.83 Aligned_cols=105 Identities=11% Similarity=0.157 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~D 146 (391)
.+.++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++++++.++|+++.+|+.+.- ..++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 46789999999999988887765 35589999999 999999999999999989999999997741 126899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|+.+.- ......++..+.++|+|||+++....-+
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9998642 1234567888889999999988765443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=104.40 Aligned_cols=109 Identities=28% Similarity=0.297 Sum_probs=95.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.|.......++.+|||.|+|+|.++..+|++ | ..+|+..|+. +.++.|++|++..++.++|++..+|+.+...++.|
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v 164 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV 164 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence 4666677889999999999999999999986 4 3689999999 99999999999999999999999999998877899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|.|+.+.. +...+++.+...|+|||.+++..+
T Consensus 165 Dav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 165 DAVFLDLP--------DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred CEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 99998653 456788899999999998875444
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=102.72 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=82.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--C-CcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--P-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~--~-~~~D~Ivs 150 (391)
.++.+|||++||+|.+++.++.+|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . + . ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999899999999 99999999999999887799999999553 1 1 1 24788888
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEcccce
Q 016320 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~~~ 186 (391)
++. |.. .....++..+ ..+|+++|+++.....
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 773 322 1233334433 4689999988876543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=107.51 Aligned_cols=99 Identities=27% Similarity=0.365 Sum_probs=79.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+|+++|++ .++..+++... .++.++.+|+.+.+++ ++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 3457899999999999999998753 468999999 88888877654 2488999999988755 78999998543
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+..+...++..+.++|+|||.+++.
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 333345778999999999999998865
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=111.98 Aligned_cols=128 Identities=18% Similarity=0.261 Sum_probs=87.4
Q ss_pred cCChHhHHHHHHHHHhc----CCCCCCCEEEEECCcccH----HHHHHHHcCC------CeEEEEech-HHHHHHHHHHH
Q 016320 57 LSDRVRMDAYFNSIFQN----KHHFQGKTVLDVGTGSGI----LAIWSAQAGA------RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~----~~~~~~~~VLDlGcG~G~----ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~~ 121 (391)
..|....+.+.+.+... ....++.+|||+|||+|. +++.+++.+. .+|+|+|+| .|++.|++.+.
T Consensus 74 fR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y 153 (264)
T smart00138 74 FRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIY 153 (264)
T ss_pred cCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCC
Confidence 44454555555443321 112345799999999995 6777776522 379999999 99999987531
Q ss_pred H----cC----------------------CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccc
Q 016320 122 A----NN----------------------LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWL 174 (391)
Q Consensus 122 ~----~~----------------------~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L 174 (391)
. .+ +.++|+|.+.|+.+.+++ ++||+|+|..+..++. ......++..+.+.|
T Consensus 154 ~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 154 PERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred CHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 0 01 224589999999987664 8999999944322222 234668999999999
Q ss_pred cCCeEEEcccc
Q 016320 175 KPTGVMYPSHA 185 (391)
Q Consensus 175 kpgG~~i~~~~ 185 (391)
+|||.+++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999987543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=106.44 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 62 RMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
.++.+.+.+...+.. ....+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555554443322 23458999999999999998875 33489999999 99999999998876 4788899876
Q ss_pred CC---CCCcccEEEEcccccccc------------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 139 IV---LPEKVDVIISEWMGYFLL------------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~---~~~~~D~Ivs~~~~~~l~------------~e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.. ..++||+|++++. |... ++ ..+..++....++|+|||.+++...
T Consensus 145 ~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 1357999999873 3211 00 1245777788899999999886643
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-11 Score=103.83 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=87.9
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
..+.......|.|||||+|..+..++++ +...|+|+|.| +|++.|++..- + ++|..+|+.++..+.+.|+|+
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~-~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D-ATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C-CceecccHhhcCCCCccchhh
Confidence 3445556688999999999999999987 44589999999 99998866532 2 899999999999889999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEee
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAP 191 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~ 191 (391)
++.....+. +-..++..+...|.|||.+-.........|
T Consensus 98 aNAvlqWlp---dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 98 ANAVLQWLP---DHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhhhhhhcc---ccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 976544443 345678888889999999887766655543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=105.57 Aligned_cols=117 Identities=25% Similarity=0.305 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
+.+...+...+. ..+.+|||+|||+|.++..+++. ...+|+++|++ .+++.|++++..+++. +++++++|+.+...
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc
Confidence 344444444332 24568999999999999999987 33489999999 9999999999998886 49999999977433
Q ss_pred CCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~------------e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++||+|++++. +.... + .....+++.+.++|+|||.+++.
T Consensus 152 ~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 478999999763 22110 0 01236678889999999998864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=104.44 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.+.+|||+|||+|.+++.+++. ...+|+|+|++ .+++.|+++.. .+.++++|+....+.++||+|||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999988874 23489999999 89999997652 2789999998766667999999988
Q ss_pred ccccccCc---------chHHHHHHHHhccccCCeEEEcccce
Q 016320 153 MGYFLLRE---------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~l~~e---------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.-.-.... .....++....+++++|+.|+|...-
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 42211111 12455777777888999988877543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=107.27 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~Ivs~~~ 153 (391)
++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+..++++++.+|..++ ..+++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4678999999999999988776 44589999999 99999999887665556799999998764 23468999998754
Q ss_pred ccc-ccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYF-LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~-l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... ....-....+++.+.+.|+|||++++.
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 221 111112367899999999999999874
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=114.06 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=89.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ |+++++|+.++..+++||+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEE
Confidence 344567889999999999999888875 23489999999 99999999999999864 999999998876457899999
Q ss_pred Ecccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...... ... ....++..+.++|+|||+++...+++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 875322110 001 123578889999999999998777654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=112.26 Aligned_cols=113 Identities=25% Similarity=0.285 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
.+|++|||+-|-||.+++.+|..||++|+.||+| ..++.|+++++.|++. .++.++++|+.++- -.++||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4589999999999999999999999999999999 9999999999999985 45899999997752 225999999
Q ss_pred EccccccccC------cchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 150 SEWMGYFLLR------ESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.++..+.-.. ..+...++..+.++|+|||+++.+.+....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 9985443221 124566777788999999999988776544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=104.03 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~ 141 (391)
.++.+|||+|||.|..++.+|+.|. +|+|||+| .+++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4567999999999999999999999 69999999 77776532 2332 2458999999998854
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. ..||+|+...+...+ .......++..+.++|+|||+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 579999974432333 33456788999999999998644
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=106.67 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=87.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+++.+ |++++.|...+... ++||.|++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEE
Confidence 4467889999999999999988875 2 3489999999 99999999999999865 99999998876433 67999999
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 ~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
++..+... .+. ....++....++|||||+++.+.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 76433210 011 123578888899999999986666543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=100.59 Aligned_cols=104 Identities=24% Similarity=0.288 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.+.+.+...++.+|||||||+|..+..+|+... +|+.+|.. +..+.|+++.+..|+.| |.++++|-..-..+ .+||
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence 455566678899999999999999999999855 89999999 99999999999999987 99999998764333 8999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.|+...-. ...++.++ ..|++||+++.-
T Consensus 141 ~I~Vtaaa-----~~vP~~Ll----~QL~~gGrlv~P 168 (209)
T COG2518 141 RIIVTAAA-----PEVPEALL----DQLKPGGRLVIP 168 (209)
T ss_pred EEEEeecc-----CCCCHHHH----HhcccCCEEEEE
Confidence 99874311 11234444 458999998744
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=106.15 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC----CCCCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI----VLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~D~Ivs 150 (391)
.++++|||+-|-||.+++.++..||++|+.||.| .+++.|+++++.|+++ ++++++..|+.+. .-.++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3678999999999999999999999999999999 9999999999999986 5799999998763 12369999999
Q ss_pred ccccccccC---cchHHHHHHHHhccccCCeEEEccccee
Q 016320 151 EWMGYFLLR---ESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 151 ~~~~~~l~~---e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++..+.-.. +.+...++..+.++|+|||.++.+.++.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 986443221 1245567777889999999988776543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-10 Score=103.05 Aligned_cols=113 Identities=22% Similarity=0.186 Sum_probs=79.9
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
...+..+|..- +...++.+|||||||+|.++..+++. + ..+|+|||++ .|.+.+.+.++.. .+|.++.+|+
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34555566432 34567889999999999999999987 3 3489999999 7665555544332 2388899998
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +.+.+|+|+++.. .. .....++..+.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva----~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA----QP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC----Cc-chHHHHHHHHHHhccCCCEEEEE
Confidence 6531 2368999999763 11 23445566788999999999873
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-10 Score=101.70 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=77.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+++|+| .|++.|+++....+..+++.+..+|+... .++||+|++..+.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhh
Confidence 4678999999999999999999887 69999999 99999999998888766799999995432 37899999843221
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.. ....+..+++.+.+++++++++.
T Consensus 139 ~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 11 22346677888877765555443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=104.14 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
+...+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| .|++.|+++...++ +++...+...+
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc
Confidence 3333333333346689999999999998887753 32 379999999 99999988765443 55555555555
Q ss_pred CCC-CcccEEEEccccccccCcchHHHHHHHHhcccc
Q 016320 140 VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 140 ~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lk 175 (391)
..+ ++||+|+|..+-+.+.. ..+..+++++.++++
T Consensus 124 ~~~~~~fD~V~~~~~lhh~~d-~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 124 VAEGERFDVVTSNHFLHHLDD-AEVVRLLADSAALAR 159 (232)
T ss_pred cccCCCccEEEECCeeecCCh-HHHHHHHHHHHHhcC
Confidence 443 79999999654333322 235678999999887
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=112.71 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=88.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccE
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++.+. .+|+|+|.+ .+++.++++++.+++. ++++++|+.++. . +++||.
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCE
Confidence 34456789999999999999999988743 489999999 9999999999999875 789999998753 2 367999
Q ss_pred EEEcccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 148 IISEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|++++...... ... ....++..+.++|||||.++...+++..
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99876422110 011 1246788889999999999977765543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=113.43 Aligned_cols=115 Identities=19% Similarity=0.133 Sum_probs=88.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccE
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ |+++++|+.++. ++++||+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCE
Confidence 344467789999999999999998886 34589999999 99999999999999876 999999998763 3378999
Q ss_pred EEEcccccccc------------Ccch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016320 148 IISEWMGYFLL------------RESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~l~------------~e~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|++++..+... .+.. ...++..+.++|||||.++.+.+++.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 99976422110 0011 23578888999999999986655544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=101.74 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.++..+++. +..+++|+|+| .|++.|+++.. .++++++|+.+ +++ ++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 35678999999999999998886 44589999999 99999987532 26788899887 443 79999999654
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+++. ...+..+++++.++++ +.+++
T Consensus 115 L~hl~-p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 115 LIHIN-PDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred hhhCC-HHHHHHHHHHHHhhcC--cEEEE
Confidence 44443 2356788888888873 34443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=112.19 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=89.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.++.+ ++++++|..++. ..++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 34567889999999999999988876 24589999999 99999999999999865 899999998764 24789999
Q ss_pred EEccccccccC---c----------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016320 149 ISEWMGYFLLR---E----------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~---e----------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...+.... . .....++....++|||||.++.+.+++.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99764322211 0 0124568888899999999998877744
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=101.47 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C-CCc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-PEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~-~~~ 144 (391)
..++.+|||||||+|.++..+++.. . .+|+|||+++|. .+.+ ++++++|+.+.. + +++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCCC
Confidence 3567899999999999999888873 2 489999999631 2233 899999998853 3 378
Q ss_pred ccEEEEccccccccCc--c------hHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRE--S------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e--~------~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+|+...+..... . ....+++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999997643332211 0 1246788999999999998863
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-10 Score=105.82 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
.+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.+++.+ +.++++|..+...+ .+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCC
Confidence 344444556778999999999999999988632 369999999 99999999999998854 89999998765433 67
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
||+|++.. . ...+...+.+.|+|||.++.
T Consensus 150 fD~Ii~~~---g------~~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 150 YDVIFVTV---G------VDEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ccEEEECC---c------hHHhHHHHHHhcCCCCEEEE
Confidence 99999742 1 11223345678999998765
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=112.24 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=89.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----C-CCcc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----L-PEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~ 145 (391)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ |+++++|..++. . .++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44567899999999999999988876 2 3489999999 99999999999999976 999999998764 2 3689
Q ss_pred cEEEEcccccccc----Cc--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 146 DVIISEWMGYFLL----RE--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 146 D~Ivs~~~~~~l~----~e--------~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|.|+++...+... .. . ....++..+.++|||||+++...++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999876432211 00 0 135778888999999999997776654
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=105.85 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+..+|||+|||+|.++..+++.. ..+|+|+|+| .|++.|+++. ..+.++++|+.+++++ ++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 45789999999999998887652 1269999999 9999887642 2388999999988776 789999983
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. +..+.++.|+|||||.++..
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEEEE
Confidence 21 12356788999999999853
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=107.81 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs 150 (391)
...+..+||||||+|.++..+|+.. ...++|+|++ .++..|.+++..+++.+ +.++++|+..+ .++ +.+|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEE
Confidence 3456799999999999999999873 3479999999 99999999999999976 99999999764 233 78999997
Q ss_pred ccccccccCc---chHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFLLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.......-.. -....++..+.|+|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4322111000 01367899999999999998764
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=100.28 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=79.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++.+|||+-||||.+++.++.+||++|+.||.+ ..+...+++++..+..++++++..|....- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 999999999999998888999999965431 2479999999
Q ss_pred ccccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016320 151 EWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
++. |.... ....++..+. .+|+++|.++....
T Consensus 121 DPP-Y~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP-YAKGL--YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S-TTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC-cccch--HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 873 33221 1245555554 89999999887643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=96.84 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=77.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
+.+.+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.+++++.. .++++++++|+.++.++ .++|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 4444455667899999999999999999985 489999999 899999988754 23599999999998766 46999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++++. |... ...+..++.. ..+.++|.+++.
T Consensus 81 vi~n~P-y~~~-~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLP-YNIS-TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEECCC-cccH-HHHHHHHHhc--CCCcceEEEEEE
Confidence 999863 3321 2233444332 224577777655
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=106.42 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 142 (391)
+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|.+ .+++.|+++++.+++. +++++++|+.++.. .
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcC
Confidence 333334443334578999999999999999999875 89999999 9999999999999984 59999999987642 2
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++||+|++++.-.. ....+++.+.+ ++|+++++.+...
T Consensus 239 ~~~D~Vv~dPPr~G-----~~~~~~~~l~~-~~~~~ivyvsc~p 276 (315)
T PRK03522 239 EVPDLVLVNPPRRG-----IGKELCDYLSQ-MAPRFILYSSCNA 276 (315)
T ss_pred CCCeEEEECCCCCC-----ccHHHHHHHHH-cCCCeEEEEECCc
Confidence 57999999875222 22233333333 5677766655443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=104.79 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=83.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C--CCcEEEEEcccccCC--CCCcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L--QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
++++||+||||+|.++..+++. +..+|++||++ .+++.|++.....+ . .++++++.+|...+. ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 67789999999 99999999876432 2 456999999987753 237899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++.......... ....+++.+++.|+|||+++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 976433221111 135678889999999999886544
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=105.44 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 140 (391)
.+...|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++......-+|.++++|+.+ +.
T Consensus 52 ~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 52 RHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 3334444443 256789999999999999988874 2479999999 9999998887653322237889999987 34
Q ss_pred CCCcc---cE--EEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 141 LPEKV---DV--IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~---D~--Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++..+ +. +++....+.+ .......+++.+.+.|+|||.+++....
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhcccccCCeEEEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 44333 33 3332212222 2334678899999999999999875443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=100.79 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=76.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||||||+|.++..+++. |.. +|++||.. .+++.|+++++..++.+ |+++++|...-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccccC
Confidence 344556666789999999999999999999987 432 69999999 89999999999988865 99999998764322
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+||.|++.. .. . ..... +.+.|++||+++.
T Consensus 140 apfD~I~v~~---a~-~-~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTA---AV-P-EIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESS---BB-S-S--HH----HHHTEEEEEEEEE
T ss_pred CCcCEEEEee---cc-c-hHHHH----HHHhcCCCcEEEE
Confidence 7899999843 11 1 12233 4456899999874
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-10 Score=110.01 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=88.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccE
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~ 147 (391)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.++...+.+..+|...... .++||.
T Consensus 233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 344567899999999999999998886 44589999999 9999999999999987445557777765442 368999
Q ss_pred EEEcccccc--ccC-cc----------------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 148 IISEWMGYF--LLR-ES----------------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~--l~~-e~----------------~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+++..... ... .. ....++....++|||||.++.+.+++..
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 998754222 111 00 1356788889999999999988777653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=93.96 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=90.2
Q ss_pred HHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC
Q 016320 67 FNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL 141 (391)
Q Consensus 67 ~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~ 141 (391)
++++...+. ...+.++||+-+|||.+++.++.+|+.+++.||.+ ......+++++..++...++++..|.... ..
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 344444443 27899999999999999999999999999999999 99999999999999888899999998854 22
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
. ++||+|+.++.-.....+.....+.-.-..+|+|+|.+++.....
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 3 359999998842211111111111212458999999998776544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-11 Score=105.65 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=92.4
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-H
Q 016320 36 KEVDFANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-K 111 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~ 111 (391)
.....+..|+.|++..++. |-|+.. .....+.|... ..-+=+++||||||||+.+..+... +.+++|+|+| .
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~--LVdkL~Y~vP~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~n 158 (287)
T COG4976 83 PSAYVETLFDQYAERFDHI--LVDKLGYSVPELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISEN 158 (287)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHHhcCccHHHHHHHHHhc-cCCccceeeecccCcCcccHhHHHH-HhhccCCchhHH
Confidence 3344577899999888774 333332 23334444433 2222479999999999999888766 4589999999 9
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 112 MSDHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 112 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.|.++--. + ++.+.+...+ ..+++||+|++ +.+.|. +.++.++.....+|+|||.+.++.-
T Consensus 159 Ml~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 159 MLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchhhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEec
Confidence 99888764321 1 3334444332 22489999998 454444 4678889999999999999987743
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-10 Score=98.94 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCC---CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 62 RMDAYFNSIFQNKH---HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~~~---~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
.++.|.+++.+.+. ..++..+||+|||+|.+++.++.. +...|+|||.| .++..|.+|++++++.+++.+++-++
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 45667666665543 234568999999999999888765 66689999999 89999999999999999999997766
Q ss_pred ccC---C--C-CCcccEEEEccccccccCc------------------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 137 EDI---V--L-PEKVDVIISEWMGYFLLRE------------------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~---~--~-~~~~D~Ivs~~~~~~l~~e------------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.- + + .+++|+++|++ .|....+ ..+-.++.-..|.|+|||.+.+...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCC-CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 542 1 2 27999999987 3432211 0133445566799999998876643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=108.33 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
++.+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|+| .|++.|+++++.+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 455555565655556778999999999999999998864 89999999 99999999999999865 999999987632
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ---~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+ .++||+|++++.-.. +..+++.+.+ ++|+++++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 257999999874222 1233455544 58888877653
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=85.28 Aligned_cols=100 Identities=33% Similarity=0.387 Sum_probs=78.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccccccc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~~~~l 157 (391)
+|||+|||+|.++..+++....+++++|.+ .++..+++...... ..+++++.+|+.+... +.++|+|+++.+....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888656689999999 88888876444333 3458999999988763 4789999986543321
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......++..+.+.|+|+|.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345778889999999999998865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=101.28 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~D 146 (391)
.+.++||||||++|..++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+|..+.- + .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45789999999999999999985 2 3379999999 899999999999999999999999987641 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|+.+.- ......+++.+.++|+|||+++....-+
T Consensus 197 ~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 197 FAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 9998652 2345677888889999999988765543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.8e-10 Score=98.51 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~-~~~~D 146 (391)
.+.++||+|||++|.-++.+|+. + ..+|+.+|.+ +.++.|++++++.|+.++|+++.+|..+.- . .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 45689999999999999999986 2 2489999999 899999999999999999999999987641 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 9997541 223456777788999999998877654433
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=117.53 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=97.0
Q ss_pred cCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC-------
Q 016320 57 LSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ------- 126 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~------- 126 (391)
+.-...++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.|+++
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 3334456666666433211 1245789999999999999998874 4589999999 9999999999987642
Q ss_pred --------CcEEEEEcccccCCCC--CcccEEEEccccccccCc------------------------------------
Q 016320 127 --------DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRE------------------------------------ 160 (391)
Q Consensus 127 --------~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e------------------------------------ 160 (391)
++|+++++|+.+.... .+||+|||++. |+...+
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred ccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 4699999999775422 36999999873 332110
Q ss_pred chHHHHHHHHhccccCCeEEEcccceeEEeecc
Q 016320 161 SMFDSVICARDRWLKPTGVMYPSHARMWVAPIR 193 (391)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~ 193 (391)
.....++....++|+|||.+++..+.-....+.
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 012456677788999999999887766555443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=100.31 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=74.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
...+|||+|||+|.+++.+++. +..+|+++|++ .|++.|+++. .+++++++|+.++....+||+|++++.-+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCcc
Confidence 3568999999999999888775 34589999999 9999988753 13899999999876567899999987332
Q ss_pred cccCcc---------------h--HHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRES---------------M--FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~---------------~--~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+..+. . +..++.....+|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 221110 0 345566667788888866554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=96.60 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=87.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---CCCcccEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV---LPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~---~~~~~D~I 148 (391)
....++||+||++.|.-++++|.. . ..+++.||.+ ++++.|+++.++.|+.++|+++. +|..+.- ..++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 346789999999999999999987 2 3589999999 99999999999999999999999 5776642 24899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+.+. .....+.+++.+.++|+|||+++....-+.
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9753 122456788888999999999887765444
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-09 Score=95.24 Aligned_cols=103 Identities=30% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEcccccCC-----CCCcccE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--LQDVVEVIEGSVEDIV-----LPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~~D~ 147 (391)
..++++|||||||+|+.++.+++. +..+|++.|.++.++.++.+++.|+ ...++.+...|..+-. .+.+||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 467899999999999999999999 7779999999988899999999987 5666888887754411 1268999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
|++ ...+..+...+.++..+.++|+++|.++
T Consensus 123 Ila---sDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 123 ILA---SDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEE---ES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred EEE---ecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 998 2333445678889999999999998844
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=104.59 Aligned_cols=111 Identities=10% Similarity=0.087 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~ 142 (391)
+.+.+...+...++.+|||+|||+|.+++.++..+. +|+|||++ .+++.|+++++.+++. +++++.+|+.++.. .
T Consensus 221 l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~ 298 (374)
T TIGR02085 221 LYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQM 298 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcC
Confidence 333333333334567999999999999999998774 89999999 9999999999999986 59999999977532 2
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+||+|+.++.-. +....+++.+.+ ++|+++++.+.
T Consensus 299 ~~~D~vi~DPPr~-----G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 SAPELVLVNPPRR-----GIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CCCCEEEECCCCC-----CCcHHHHHHHHh-cCCCeEEEEEe
Confidence 5699999998532 222344555533 68888777653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=96.76 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-- 141 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-- 141 (391)
...|...+...+|.+|||.|+|+|.++..+++. | ..+|+..|.. +.++.|+++++..++.++|++.+.|+.+-.+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 346777788899999999999999999999987 3 4589999999 9999999999999999889999999965322
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcc
Q 016320 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPS 183 (391)
Q Consensus 142 --~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L-kpgG~~i~~ 183 (391)
...+|.|+.++.. +..++..+.+.| ++||.+...
T Consensus 109 ~~~~~~DavfLDlp~--------Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 ELESDFDAVFLDLPD--------PWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T-TTSEEEEEEESSS--------GGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccCcccEEEEeCCC--------HHHHHHHHHHHHhcCCceEEEE
Confidence 3679999987642 223466667779 899987743
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-09 Score=103.64 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
.+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ ++|+|+|++ .+++.|+++++.+++.+ ++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHH
Confidence 34444455555544566899999999999999999875 489999999 99999999999999864 999999997631
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ..+||+|+.++.-.. ....+++.+.+ ++|+++++.+
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 1 246999999874322 22345555443 7888876654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.6e-09 Score=97.52 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=84.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCC--C-CCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~-~~~~D~I 148 (391)
.+.++||+||||.|.++..+++. +..+|+.||++ .+++.|++..... ++ .++++++.+|....- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34689999999999999999988 35689999999 8999999987542 23 347999999976542 2 3689999
Q ss_pred EEccccccccCc-chHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 149 ISEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 149 vs~~~~~~l~~e-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+++......... -.-..+++.+++.|+|||+++......+.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 997643221111 11356788899999999999876554443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-09 Score=93.09 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
|+..-+..|.+. ..++.+|||+.||.|.+++.+|+. .+++|+|+|++ ..++.++++++.|+++++|.++++|.+++
T Consensus 87 rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 87 RLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF 164 (200)
T ss_dssp GGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred ccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence 333334445554 357899999999999999999984 35589999999 89999999999999999999999999998
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
.....+|-|++++.... ..++....+++++||++
T Consensus 165 ~~~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LPEGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred cCccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 65689999998654322 23566677888999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-09 Score=92.51 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=73.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-CcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~~D~Ivs~~~~ 154 (391)
+..-|||||||+|+.+..+...|. .++|+|+| .|++.|.+.--+ -.++.+|+-+ +++. +.||-+||...-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 79999999 999999872211 3677888864 4544 899999883322
Q ss_pred ccccCc--------chHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLRE--------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+++. .-+..++..++..|++|+..++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 222221 12556778889999999988765
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-09 Score=95.98 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=80.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccC--CCCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDI--VLPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~D~Ivs 150 (391)
.+++||+||||+|.++..+++.. ..+|+++|++ .+++.|++.....+ + ..+++++.+|..+. ..+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34699999999999998888875 6689999999 89999998875432 1 24588888887663 12478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.......... ....+++.+.+.|+|||+++....
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76432211111 135678889999999999987644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=93.23 Aligned_cols=97 Identities=26% Similarity=0.346 Sum_probs=68.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. +..+|+++|++++. .. .+++++++|+.+.. .+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 457899999999999999888776 34479999999422 11 23788888887642 23 67
Q ss_pred ccEEEEcccccc-ccC-c------chHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYF-LLR-E------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~-l~~-e------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+++...+. ..+ . .....++..+.++|+|||.+++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999998642111 100 0 12367888899999999998864
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.8e-09 Score=92.39 Aligned_cols=108 Identities=20% Similarity=0.376 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-----CC----------------------
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-----LQ---------------------- 126 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-----~~---------------------- 126 (391)
.+.++.+|||||.+|.+++.+|+. |+..|.|+|++ ..+..|+++++..- ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 467789999999999999999987 88899999999 89999999875321 00
Q ss_pred -------C-------cEEEEEcccccCCCCCcccEEEEc----cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 127 -------D-------VVEVIEGSVEDIVLPEKVDVIISE----WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 127 -------~-------~v~~~~~d~~~~~~~~~~D~Ivs~----~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ +..+...|+.++. ..+||+|+|= |+.-. .++.-+..++..+.++|.|||++|....
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLN-wgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLN-WGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecc-cccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 0 1111112222111 2689999982 22212 2233478899999999999999986543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=98.14 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccCC-----CC
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~-----~~ 142 (391)
++.+|||||||.|.-.....+++.++++|+|++ ..++.|+++.+.. ...-...++.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999887777777888899999999 8999998887321 11123677888875431 12
Q ss_pred --CcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 --EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+||+|-|-. |.|....+.....++..+...|+|||+||-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4999999954 7888888888888999999999999999844
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=95.19 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C------CCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~ 145 (391)
.+.++||+||+++|.-++.+|+. + -.+|+.+|.+ +..+.|++++++.|+.++|+++.++..+.- + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45689999999999999999886 2 2389999999 899999999999999999999999987741 1 2589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 99997541 223456677778999999998876554443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=97.70 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH-----HHcCC-CCcEEEEEcccccCC--CCCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV-----KANNL-QDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~~~--~~~~~D 146 (391)
...++||+||||+|.....+.+.. ..+|++||++ +|++.|++.. ....+ .++++++.+|..++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345799999999999988888874 5689999999 9999999621 11222 457999999998752 237899
Q ss_pred EEEEcccccccc--CcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|++++...... ..-.-..+++.+++.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999986432211 11112567888999999999987653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-09 Score=105.40 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHH--HH---cCCC-CcEEEEEcccccCC--CCCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLV--KA---NNLQ-DVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~--~~---~~~~-~~v~~~~~d~~~~~--~~~~~D 146 (391)
.++++|||||||+|..+..+++.+. .+|++||++ ++++.|+++. .. ..++ ++++++.+|.++.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3568999999999999999988854 699999999 9999999832 21 1222 46999999998742 347999
Q ss_pred EEEEccccccccC--cchHHHHHHHHhccccCCeEEEcccce
Q 016320 147 VIISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivs~~~~~~l~~--e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+|+++........ .-....+++.+++.|+|||+++.....
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999864322110 111245788889999999999876543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=95.79 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.|.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++...+..++++++++|+.+..+ .++|
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d 103 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD 103 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence 3455555556788999999999999999998865 79999999 9999999998877755679999999988765 4789
Q ss_pred EEEEccc
Q 016320 147 VIISEWM 153 (391)
Q Consensus 147 ~Ivs~~~ 153 (391)
+|++++.
T Consensus 104 ~VvaNlP 110 (294)
T PTZ00338 104 VCVANVP 110 (294)
T ss_pred EEEecCC
Confidence 9999863
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=95.09 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=70.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~~~l 157 (391)
+.++|+|||+|.-++.+|.. +++|+|+|+| .|++.|++.-...-.....++...++.++.- ++++|+|+| ..++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~---Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA---AQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehh---hhhH
Confidence 38999999999878888887 6789999999 9999888754332222223444444555432 489999998 3333
Q ss_pred cCcchHHHHHHHHhccccCCe-EEEc
Q 016320 158 LRESMFDSVICARDRWLKPTG-VMYP 182 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG-~~i~ 182 (391)
++- +++.+.+.++|+||++| ++.+
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 333 57889999999999887 4443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=89.68 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CC-CcccEEEEccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV-LP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~-~~~D~Ivs~~~ 153 (391)
++.+|||+|||+|.++..+++.....++|+|++ ++++.|++ . .++++++|+.+ +. ++ ++||+|+|...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 567999999999999998887644478999999 88877753 1 26888888876 32 33 68999999542
Q ss_pred cccccCcchHHHHHHHHhccccCC
Q 016320 154 GYFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
+.+-.+...+++++.+.++++
T Consensus 85 ---l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 85 ---LQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred ---hHcCcCHHHHHHHHHHhCCeE
Confidence 222234667778777766543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=93.44 Aligned_cols=83 Identities=29% Similarity=0.448 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..+.|.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .|++.+++++.. .++++++++|+.++.++ .
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~-~ 91 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP-E 91 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch-h
Confidence 344455555556789999999999999999999865 89999999 999999987754 23599999999987764 5
Q ss_pred ccEEEEccc
Q 016320 145 VDVIISEWM 153 (391)
Q Consensus 145 ~D~Ivs~~~ 153 (391)
+|.|++++.
T Consensus 92 ~d~Vv~NlP 100 (258)
T PRK14896 92 FNKVVSNLP 100 (258)
T ss_pred ceEEEEcCC
Confidence 899999874
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=94.32 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~ 142 (391)
.+.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|++-|+.|.+..++.+ ..++.. |++.++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4445555555567889999999999999999999999 79999999 99999999999998876 555555 99999988
Q ss_pred C-cccEEEEccccccccC-------cchHHHHHHHHhccccCCeEEEcccc
Q 016320 143 E-KVDVIISEWMGYFLLR-------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~-~~D~Ivs~~~~~~l~~-------e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ .+|.|++++. |.-.. +.....+++.+...|++||.+++...
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 4999999873 33221 23466778888999999998876544
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.7e-09 Score=97.29 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=137.3
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc--cccccCcc-hHHHHHHHHhccccCCe
Q 016320 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM--GYFLLRES-MFDSVICARDRWLKPTG 178 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~--~~~l~~e~-~~~~~l~~~~~~LkpgG 178 (391)
+++-.+.+ .....-.++.-...+.+ ++.+..=+ ..+++.|+++.+++ .....+.. .+-.....++..+.|+-
T Consensus 391 ~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~ 466 (636)
T KOG1501|consen 391 KRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDEL 466 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCce
Confidence 45555666 33333344444444433 33333221 22345687776653 11222221 11223455667889999
Q ss_pred EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhh---hhhhcccCceeecCCCCc
Q 016320 179 VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQ---KKYYLQTSLWSNLHPDQV 255 (391)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 255 (391)
.+.|..+.+.+.|.. +...+++..+...+.|||++.|.++..... +.....+++|+ ++...
T Consensus 467 ~V~P~~~~L~Ai~~k--------------F~DL~~I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWE--Y~~~~ 530 (636)
T KOG1501|consen 467 RVEPHMGVLKAIPEK--------------FEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWE--YAGIV 530 (636)
T ss_pred eeccccchhhhhhHH--------------HHHHHhhcccccccccceeeehhHHHHhhchhhhhhhccchhhh--ccCee
Confidence 999999988886663 233456777788999999999966443210 01111246666 67888
Q ss_pred cccceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCC-------CCCCC
Q 016320 256 IGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS-------TYNGT 328 (391)
Q Consensus 256 ls~p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~-------~~~~~ 328 (391)
+++|.++++|++......+ +..+.+. +.+.-||+.+|++++|.+ +.|||+-. ..+..
T Consensus 531 ~~d~~eIL~F~~~~~V~~Q------k~~V~i~-~~~sS~A~~mWME~~~~~---------~nLSTGLL~~~~~G~~~WN~ 594 (636)
T KOG1501|consen 531 KGDAVEILRFPIDGRVSSQ------KCVVNID-NMSSSNAIPMWMEWEFGG---------INLSTGLLSISSAGVPEWNK 594 (636)
T ss_pred cCCceeEEEeccCCccccc------eeEEEcc-CCCccccceeeEEeeeCc---------eeecccceeecCCCCcccCc
Confidence 9999999999998755433 3556667 999999999999999964 55555431 14567
Q ss_pred CccceEEecCCccccCCCCEEEEEEEEEeCCCC
Q 016320 329 HWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKEN 361 (391)
Q Consensus 329 hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~ 361 (391)
|.||+||++..-+ .-.-++.+.+.+.++..+
T Consensus 595 ~~KQ~VYF~~t~L--~~~ksl~~~~~F~~~TGD 625 (636)
T KOG1501|consen 595 GYKQGVYFPITAL--RNDKSLCLHALFDKSTGD 625 (636)
T ss_pred cccceeEEEhHHh--CCCceEEEEEEEcCCCCc
Confidence 9999999874444 333467777777666543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=93.58 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=60.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEE-cccccCC-----CCCcccEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIE-GSVEDIV-----LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~-----~~~~~D~I 148 (391)
++.+|||||||+|.+...++.. ...+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4578999999999776665543 33379999999 9999999999999 7988898865 3333321 13689999
Q ss_pred EEcccccccc
Q 016320 149 ISEWMGYFLL 158 (391)
Q Consensus 149 vs~~~~~~l~ 158 (391)
+|++. |+..
T Consensus 194 vcNPP-f~~s 202 (321)
T PRK11727 194 LCNPP-FHAS 202 (321)
T ss_pred EeCCC-CcCc
Confidence 99984 4433
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.4e-09 Score=90.98 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=78.3
Q ss_pred EEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEEc
Q 016320 81 TVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIISE 151 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Ivs~ 151 (391)
+||+||||.|.....+.+-.. -+|+++|.| .+++..+++...+. .++.....|+..-. .++.+|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 799999999998888877633 279999999 88888887766553 33555555554432 22789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+...+..+ ....+++.+.++|||||.+++.++..+-
T Consensus 152 FvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 544444444 3567899999999999999988776654
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=85.87 Aligned_cols=120 Identities=24% Similarity=0.303 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC-e---------EEEEech-HHHHHHHHHHHHcCCCCcEEE
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR-K---------VYAVEAT-KMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~-~---------V~avD~s-~~~~~a~~~~~~~~~~~~v~~ 131 (391)
.+....++.......++..|||--||+|.+.+.++..+.. . ++|+|++ .+++.|+++++..++.+.|.+
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 3455666776666677889999999999999988776321 2 7899999 999999999999999988999
Q ss_pred EEcccccCCC-CCcccEEEEccccccc--cC----cchHHHHHHHHhccccCCeEEEcc
Q 016320 132 IEGSVEDIVL-PEKVDVIISEWMGYFL--LR----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 132 ~~~d~~~~~~-~~~~D~Ivs~~~~~~l--~~----e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.|+.++++ .+.+|+||+++. |.. .. +.....+++.+.++|++...++..
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EecchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999999984 489999999873 332 11 123456678888999995544433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=89.12 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=78.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH------H-c----CCCCcEEEEEcccccCCCC--
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK------A-N----NLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~------~-~----~~~~~v~~~~~d~~~~~~~-- 142 (391)
.++.+||+.|||.|.-+.++|+.|. +|+|+|+| ..++.+.+... . + --...|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3568999999999999999999999 59999999 77776644210 0 0 0013499999999998631
Q ss_pred --CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 --EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|+-... .+.....+...+.+.+.++|+|||.++..
T Consensus 121 ~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 58999876432 22334456788899999999999987643
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=97.73 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=79.1
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~~ 155 (391)
+.+|||++||+|.+++.++.. ++.+|+++|++ .+++.++++++.|++.+ ++++++|+..+.. .++||+|+.++.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 468999999999999998775 66689999999 99999999999999875 7899999877533 4679999998742
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+++...+.++++|++.++
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234566655668999998877
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-08 Score=91.95 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-c------C----CCCcEEEE
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-N------N----LQDVVEVI 132 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~------~----~~~~v~~~ 132 (391)
.+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . . -..+|+++
T Consensus 25 ~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 25 ALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 33344443 3345667999999999999999999998 79999999 777776432211 0 0 02358999
Q ss_pred EcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 133 EGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 133 ~~d~~~~~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++|+.++... ++||+|.=-..- +.....+-..+.+.+.++|+|||.++.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred EcccccCChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 9999998654 579999964432 233445678889999999999999543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=92.83 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=65.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-c
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-V 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 145 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.++++... ++++++++|+.+++++.- .
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 3444455556778999999999999999999976 89999999 999999886642 359999999999876532 5
Q ss_pred cEEEEccc
Q 016320 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivs~~~ 153 (391)
|.||+++.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 89999863
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-08 Score=91.64 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEcccccC------CCCC
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSVEDI------VLPE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~------~~~~ 143 (391)
..++..++|+|||-|.-.+..-++|..+++++|++ -.++.|+++.+...-.. .+.|+.+|.... +.+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 35678899999999998888888999999999999 78888887765321111 278999987543 2233
Q ss_pred -cccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 144 -KVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 -~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+||+|-|-. +.|....+.....++..+.+.|+|||+||=..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 499999853 56666666667888999999999999998443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=89.48 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
+..++.......++++|||+|||+|.++..+++.|+++|+|+|++ .|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 334444433346788999999999999999999999899999999 67754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=85.58 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=62.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~ 152 (391)
.++.+|||||||.|.+...+.+.-..+.+|+|++ +.+..+.+ +| +.++++|+.+- .++ ++||.||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIl-- 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVIL-- 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEeh--
Confidence 4689999999999999888887544479999999 65544432 33 78999999763 244 89999986
Q ss_pred ccccccCcchHHHHHHHHhcccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~Lk 175 (391)
...+..-..+..+++++.|+-+
T Consensus 82 -sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 -SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred -HhHHHhHhHHHHHHHHHHHhcC
Confidence 3333333446677777755533
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8e-09 Score=90.49 Aligned_cols=121 Identities=24% Similarity=0.260 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhc--CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccc
Q 016320 62 RMDAYFNSIFQN--KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVE 137 (391)
Q Consensus 62 r~~~~~~~i~~~--~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~ 137 (391)
+.+-|.+++.+. ....++.+|||.+.|-|..++.++++||.+|+.+|.+ ..++.|.-|=-..++ +..|+++.+|+.
T Consensus 116 ~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 116 GTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 344455555443 2334689999999999999999999999999999999 888776543211111 124899999998
Q ss_pred cC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 138 DI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 138 ~~--~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++ .++ ++||+|+.++.-+.+..+-.-..+.+++.|+|+|||.++-
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 86 344 7899999998766665655567888999999999999874
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=91.72 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 141 (391)
+.+.+.+.+.+.. .+.+|||++||+|.+++.+++.. ++|+|||.+ ++++.|+++++.+++.+ ++++.+|+.++..
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHH
Confidence 3334444444322 23469999999999999888764 589999999 99999999999999865 9999999877421
Q ss_pred ----------C------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 ----------P------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ----------~------~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. .++|+|+.++.-. +....+++.+.+ |+++++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 0 1379999988532 223445555433 66666654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-08 Score=90.58 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=83.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.+|.+|||+-||.|.+++.+|+.|..+|+|+|+| ..+++++++++.|++.+.|+.+++|.+++... +.+|-|++..+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 4589999999999999999999998779999999 89999999999999999999999999998766 88999997432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.. ...++....+.+++||++-.
T Consensus 266 --~~----a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 --KS----AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred --Cc----chhhHHHHHHHhhcCcEEEE
Confidence 21 23456666677888987653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-07 Score=76.21 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++ + +.++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH
Confidence 44556666655567899999999997 8999999887 79999999 766666543 2 78999999887655
Q ss_pred -CcccEEEE
Q 016320 143 -EKVDVIIS 150 (391)
Q Consensus 143 -~~~D~Ivs 150 (391)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=77.95 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..+.+||||||+|..+-++++. +.....++|+| .+++..++.++.|+.. +..++.|+..--.++++|+++-++ +
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNP-P 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNP-P 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECC-C
Confidence 3578999999999999988886 34478899999 8888889999888865 889999987754458999999876 3
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEc
Q 016320 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e-------------------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|....+ ...+.++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 332211 1256777888888999998653
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=90.86 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
.+.+.+.+...+.. .+.+|||++||+|.+++.+++. +++|+|||.+ .+++.|+++++.+++. +++++.+|+.++-
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444444322 2357999999999999988876 5589999999 9999999999999986 4999999987641
Q ss_pred -C---------------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 -L---------------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~---------------~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ..+||+|+.++.- . +..+.++..+.+ ++++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~----G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-A----GLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-C----CCcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999999853 2 223344554433 56665544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=85.13 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
...+.|.......+...||++|.|||.++..+.++|+ +|+|+|++ .|+....++++-...+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3445566666677889999999999999999999987 79999999 99999999888777778899999999888765
Q ss_pred cccEEEEcc
Q 016320 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivs~~ 152 (391)
.||++|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999976
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.5e-08 Score=85.20 Aligned_cols=128 Identities=18% Similarity=0.262 Sum_probs=77.3
Q ss_pred hcCChHhHHHHHHHHHh-cCCC---CCCCEEEEECCccc----HHHHHHHHc---CC---CeEEEEech-HHHHHHHHHH
Q 016320 56 MLSDRVRMDAYFNSIFQ-NKHH---FQGKTVLDVGTGSG----ILAIWSAQA---GA---RKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~-~~~~---~~~~~VLDlGcG~G----~ls~~~a~~---g~---~~V~avD~s-~~~~~a~~~~ 120 (391)
++.|....+.+.+.+.. .+.. .+..+|+..||+|| .+++.+.+. .. -+|+|+|+| .+++.|++-+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~ 84 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGI 84 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTE
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCC
Confidence 34556666677776662 3221 23478999999999 466666662 12 279999999 8998886522
Q ss_pred --------------HHc-------C------CCCcEEEEEccccc-CCCCCcccEEEE-ccccccccCcchHHHHHHHHh
Q 016320 121 --------------KAN-------N------LQDVVEVIEGSVED-IVLPEKVDVIIS-EWMGYFLLRESMFDSVICARD 171 (391)
Q Consensus 121 --------------~~~-------~------~~~~v~~~~~d~~~-~~~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~~ 171 (391)
++. . +.++|+|.+.|+.+ .+..++||+|+| +.+-|+ .+.....+++.+.
T Consensus 85 Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 85 YPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLH 162 (196)
T ss_dssp EEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS---HHHHHHHHHHHG
T ss_pred CCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe--CHHHHHHHHHHHH
Confidence 000 0 12469999999988 333489999999 444444 3345688999999
Q ss_pred ccccCCeEEEcccc
Q 016320 172 RWLKPTGVMYPSHA 185 (391)
Q Consensus 172 ~~LkpgG~~i~~~~ 185 (391)
+.|+|||.+++...
T Consensus 163 ~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 163 RSLKPGGYLFLGHS 176 (196)
T ss_dssp GGEEEEEEEEE-TT
T ss_pred HHcCCCCEEEEecC
Confidence 99999999987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=82.67 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=75.3
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEEEEccc
Q 016320 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~Ivs~~~ 153 (391)
..+||||||.|.+.+.+|+. .-..++|||+. ..+..|.+.+...++.| +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999888887 44579999999 88888988888889876 99999998773 23488998886433
Q ss_pred cccccCc-----chHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRE-----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e-----~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....-.. -.-+.++..+.+.|+|||.+.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 2222111 12467888999999999988654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-08 Score=78.98 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.|.......+|++++|||||+|.++..++-.++..|.|+|+. ++++.+.+++....++ +.++++|+.++.+. +.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEe
Confidence 345556678899999999999999988877788899999999 9999999999988776 79999999998766 7899
Q ss_pred EEEEcc
Q 016320 147 VIISEW 152 (391)
Q Consensus 147 ~Ivs~~ 152 (391)
..+.++
T Consensus 117 taviNp 122 (185)
T KOG3420|consen 117 TAVINP 122 (185)
T ss_pred eEEecC
Confidence 999875
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=92.08 Aligned_cols=119 Identities=24% Similarity=0.282 Sum_probs=92.2
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
+...++.+...+.+.+...++.+|||+-||.|.+++.+|+... +|+|+|++ ++++.|+++++.|++.| ++|+.++.+
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHH
Confidence 3455666666666666667788999999999999999997644 89999999 99999999999999988 999999999
Q ss_pred cCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 138 DIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 138 ~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++... ..+|+|+.++.-..+. ..+++.+.+ ++|..+++++..
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGAD-----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCCC-----HHHHHHHHh-cCCCcEEEEeCC
Confidence 87433 4789999988654432 345555543 567766665533
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=88.62 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||.||+|.|.++..+.+. +..+|++||++ .+++.|++....++ + .++++++.+|...+- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988886 56789999999 99999999875432 2 457999999988752 2378999999
Q ss_pred cccccc---ccCcchHHHHHH-HHhccccCCeEEEcc
Q 016320 151 EWMGYF---LLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~---l~~e~~~~~~l~-~~~~~LkpgG~~i~~ 183 (391)
+..... ....-.-..+++ .+++.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 853221 011011235666 788999999998765
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.9e-07 Score=78.81 Aligned_cols=99 Identities=29% Similarity=0.379 Sum_probs=79.6
Q ss_pred EEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016320 81 TVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~ 158 (391)
+++|||+|.|.-++.+|-. ...+++.+|.+ .-+...+..+...+++| ++++++++++.....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhc----
Confidence 7999999999988888776 34479999999 88888899999999986 99999999994445899999997653
Q ss_pred CcchHHHHHHHHhccccCCeEEEccccee
Q 016320 159 RESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.+..++.-+.++|++||.++...+..
T Consensus 126 ---~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 126 ---PLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp ---SHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 35677888899999999988765543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-08 Score=85.49 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 156 (391)
..++||.|+|.|..+..+.-.-+.+|..||+. ..++.|++..... .....++.+..++++.++ .+||+|.+.|...+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 47899999999999986654457799999999 9999998765441 123468899999998765 79999999986555
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|..+ ++-.+|..++..|+|+|.|++-..
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence 5444 688899999999999998886543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=81.64 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=78.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+.|..+.....+++|||+|+|+|+.++.++++|++.|++.|+. -....++-|++.|+.. |.+...|... .+..+|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CCccee
Confidence 4566666677899999999999999999999999999999999 6777788889999976 8899888776 357899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+|+. +........-..++. +.+.|+..|.
T Consensus 145 l~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 145 LLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred EEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 9987 222222223344555 4444555543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-07 Score=83.78 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=77.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.......+.++|+|||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -++|. +|++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D~~ 162 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-ADVY 162 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ESEE
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-ccce
Confidence 344444445579999999999999998887 3337999999877777776 467999999998 45666 9999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCC--eEEEcccc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPT--GVMYPSHA 185 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~Lkpg--G~~i~~~~ 185 (391)
+...+.+.+.. .....+|+.+++.|+|| |++++...
T Consensus 163 ~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 97444444333 34678899999999999 99887644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=85.14 Aligned_cols=111 Identities=22% Similarity=0.209 Sum_probs=87.1
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
++||-||-|.|..+..+.+.. ..+++.||++ .+++.+++...... . ..+++++.+|..++- .+++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999985 5689999999 99999999875432 2 368999999988763 336899999976
Q ss_pred ccccccCcch-HHHHHHHHhccccCCeEEEcccceeEEe
Q 016320 153 MGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~l~~e~~-~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 190 (391)
.......+.. -..+++.+++.|+++|+++......+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5443222211 3578899999999999999886665554
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=85.44 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=64.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++++ .+
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~ 92 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DF 92 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-Hc
Confidence 33444555556778999999999999999999876 69999999 999998877643 24599999999987764 56
Q ss_pred c---EEEEcc
Q 016320 146 D---VIISEW 152 (391)
Q Consensus 146 D---~Ivs~~ 152 (391)
| +|++++
T Consensus 93 d~~~~vvsNl 102 (253)
T TIGR00755 93 PKQLKVVSNL 102 (253)
T ss_pred CCcceEEEcC
Confidence 6 888876
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7e-07 Score=85.08 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---------------------------------------- 102 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~---------------------------------------- 102 (391)
.+....+|.......++..++|--||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 5667778888777778889999999999999998877531
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc--ccCcchHH----HHHHHHhccc
Q 016320 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF--LLRESMFD----SVICARDRWL 174 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~--l~~e~~~~----~~l~~~~~~L 174 (391)
.++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+ +.+|+||||+. |. +..+.... .+.+.+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 37799999 99999999999999999999999999999877 89999999983 43 22332333 3334445666
Q ss_pred cCCeEEEcccc
Q 016320 175 KPTGVMYPSHA 185 (391)
Q Consensus 175 kpgG~~i~~~~ 185 (391)
+.-+..|+...
T Consensus 335 ~~ws~~v~tt~ 345 (381)
T COG0116 335 AGWSRYVFTTS 345 (381)
T ss_pred cCCceEEEEcc
Confidence 66666665544
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=88.26 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=80.8
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~ 153 (391)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|++.+ ++++++|+..+.. ..+||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999987 78899999999 99999999999998864 8999999887632 267999998873
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ....+++.+.+.++++|.+.+.
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1235677777888999988766
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=80.53 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=60.6
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016320 105 YAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
+|+|+| +|++.|+++.+..+ ..++|+++++|+.+++++ ++||+|++. +.+.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234599999999999876 689999983 33443346788999999999999998
Q ss_pred Ecccc
Q 016320 181 YPSHA 185 (391)
Q Consensus 181 i~~~~ 185 (391)
++...
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 76533
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=80.40 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=79.2
Q ss_pred EEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016320 81 TVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~Iv 149 (391)
+|||||||||..+..+|++-. -+..-.|.+ ......+..+...++++....+..|+.+-.. ++.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998733 356677888 6656777777777877655666667665421 25899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|..|.++..++ ....++....++|++||.++..-.
T Consensus 108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCC
Confidence 97666776665 568899999999999999885543
|
The function of this family is unknown. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-07 Score=82.17 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=74.2
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+|.|..- .+.|.......++..|||||+|.|.++..+++.++ +|+|+|++ .++...++... ..++++++++
T Consensus 12 FL~d~~v----~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~ 83 (259)
T COG0030 12 FLIDKNV----IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVING 83 (259)
T ss_pred cccCHHH----HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeC
Confidence 4555533 45566666666789999999999999999999977 69999999 88888887765 2345999999
Q ss_pred ccccCCCCC--cccEEEEccccccc
Q 016320 135 SVEDIVLPE--KVDVIISEWMGYFL 157 (391)
Q Consensus 135 d~~~~~~~~--~~D~Ivs~~~~~~l 157 (391)
|+...+++. .++.||+++ .|..
T Consensus 84 DaLk~d~~~l~~~~~vVaNl-PY~I 107 (259)
T COG0030 84 DALKFDFPSLAQPYKVVANL-PYNI 107 (259)
T ss_pred chhcCcchhhcCCCEEEEcC-CCcc
Confidence 999998886 789999987 4443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=82.11 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 156 (391)
...++||||+.|.+...+...|..+++-+|.| .|++.++.. +.+++. +..+.+|-+.+++. +++|+|++.+ .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhcccccccchhhhhhhh---h
Confidence 36799999999999999998888899999999 999888763 345544 67788898888876 8999999843 4
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++|.++++..+..++..|||+|.||-.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 556667888888899999999998743
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=87.71 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||++||.|.=+..+|.. +...|+|+|++ .-+..+++++++.|+.+ |.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 3468899999999999988888775 23489999999 88999999999999976 889999987753 347899999
Q ss_pred Eccccccc--c--Cc---------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 150 SEWMGYFL--L--RE---------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l--~--~e---------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+...... . .. .....+|....++|||||+++-+.+++.-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 86643321 1 10 01246777888999999999988887543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-07 Score=78.56 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=96.2
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC---CCC--CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HH
Q 016320 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH---HFQ--GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KM 112 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~---~~~--~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~ 112 (391)
-..|++.........+........+.|.+.+...+. ..+ +++++|||+|.|.-++.+|-. ...+|+-+|.. .-
T Consensus 24 l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk 103 (215)
T COG0357 24 LEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK 103 (215)
T ss_pred HHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence 344555444443333333334445566665554332 122 589999999999998887743 33369999999 88
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+...+....+.+++| ++++++.++++....+ ||+|+|..+. .+..+..-+..++++||.++.
T Consensus 104 ~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 104 IAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchh
Confidence 888999999999977 9999999999875444 9999997653 356677778899999998764
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-07 Score=78.28 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~Ivs~~ 152 (391)
.+|+|+.||.|..++.+|+.+. +|+|||++ ..++.|+.+++-.|..++|+++++|+.++... . .+|+|++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999855 89999999 89999999999999999999999999886322 2 289999865
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.6e-07 Score=86.00 Aligned_cols=93 Identities=27% Similarity=0.321 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
-++.+.+.+.+.+...++ .|||+-||.|.+++.+|+... +|+|||.+ .+++.|+++++.|++.+ ++|+.+++.++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 345555556666655555 799999999999999998755 89999999 99999999999999976 999998776541
Q ss_pred C----------------C-CcccEEEEccccccc
Q 016320 141 L----------------P-EKVDVIISEWMGYFL 157 (391)
Q Consensus 141 ~----------------~-~~~D~Ivs~~~~~~l 157 (391)
. . ..+|+|+.++.-.++
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 1 268999998864444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-07 Score=79.46 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcE-EEEEcccccCCC-
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVV-EVIEGSVEDIVL- 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~- 141 (391)
.+..++...--..+++++||||+-||.++..+.+.||++|+|+|.. ..+..--+. ..+| .+-..+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 4445565554467899999999999999999999999999999998 544332211 1224 344456666543
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 --~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+..|+++|+. .+. .+..++..+..+++|++.+++
T Consensus 140 ~~~~~~d~~v~Dv-SFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV-SFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe-ehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 36789999975 222 467888899999999997764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.3e-07 Score=81.61 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=89.5
Q ss_pred hhcCChHhHHHHHHHHHhcCC-CC--CCCEEEEECCccc----HHHHHHHHcCC------CeEEEEech-HHHHHHHHHH
Q 016320 55 EMLSDRVRMDAYFNSIFQNKH-HF--QGKTVLDVGTGSG----ILAIWSAQAGA------RKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~-~~--~~~~VLDlGcG~G----~ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~ 120 (391)
.++.++...+.+.+.+...+. .. ..-+|+.+||+|| .+++.+.+.+. -+|+|+|++ .+++.|+.-+
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 456677777777776664321 12 2568999999999 46777777642 379999999 8999886522
Q ss_pred HH-----cC-----------------------CCCcEEEEEcccccCC-CCCcccEEEE-ccccccccCcchHHHHHHHH
Q 016320 121 KA-----NN-----------------------LQDVVEVIEGSVEDIV-LPEKVDVIIS-EWMGYFLLRESMFDSVICAR 170 (391)
Q Consensus 121 ~~-----~~-----------------------~~~~v~~~~~d~~~~~-~~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~ 170 (391)
-. .+ +...|.|-..|+..-. .++.||+|+| +.|-|+ .+.....++...
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF--d~~~q~~il~~f 227 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF--DEETQERILRRF 227 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee--CHHHHHHHHHHH
Confidence 11 11 1234777777776655 5688999999 555444 334567889999
Q ss_pred hccccCCeEEEcccc
Q 016320 171 DRWLKPTGVMYPSHA 185 (391)
Q Consensus 171 ~~~LkpgG~~i~~~~ 185 (391)
...|+|||.+++-..
T Consensus 228 ~~~L~~gG~LflG~s 242 (268)
T COG1352 228 ADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHhCCCCEEEEccC
Confidence 999999999886543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-07 Score=81.05 Aligned_cols=107 Identities=24% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCC---CCcEEEEEcccccC--CCCC-cccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNL---QDVVEVIEGSVEDI--VLPE-KVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~--~~~~-~~D~Iv 149 (391)
+.++||-||-|.|..+..+.+.. ..+|++||++ .+++.|++....... .++++++.+|...+ ...+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998874 5689999999 899999997765322 35799999999775 2235 899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.......... ....+++.+++.|+|+|+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 976542211111 23578899999999999988654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-06 Score=76.71 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~I 148 (391)
...-+||||.||.|...+-+... . ..+|...|.| ..++..++.+++.|+++.++|.++|+.+.. +....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999887766654 3 3589999999 889999999999999998899999987742 22457887
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+...+.-.......+...+..+.+.+.|||++|.....++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 7644322222223466678889999999999997665444
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=90.77 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcC-----------------------------------------
Q 016320 63 MDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAG----------------------------------------- 100 (391)
Q Consensus 63 ~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~g----------------------------------------- 100 (391)
.+.+..++...... .++..++|-+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 45666777766554 457899999999999988876521
Q ss_pred --CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEccccccc--cCcchHHHHHHHHhc
Q 016320 101 --ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWMGYFL--LRESMFDSVICARDR 172 (391)
Q Consensus 101 --~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Ivs~~~~~~l--~~e~~~~~~l~~~~~ 172 (391)
..+++|+|++ .+++.|++++..+|+.+.|++.++|+.++..+ +++|+|++|+ .|.. ..+..+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP-PYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNP-PYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECC-CCcCccCchHHHHHHHHHHHH
Confidence 1259999999 99999999999999998899999999987654 4699999997 3332 222234444444333
Q ss_pred ccc---CCeEE
Q 016320 173 WLK---PTGVM 180 (391)
Q Consensus 173 ~Lk---pgG~~ 180 (391)
.|+ +|+.+
T Consensus 333 ~lk~~~~g~~~ 343 (702)
T PRK11783 333 RLKQQFGGWNA 343 (702)
T ss_pred HHHHhCCCCeE
Confidence 333 66554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-07 Score=80.35 Aligned_cols=94 Identities=28% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~ 155 (391)
...++||||+|.|..+..++.. .++|++.|.| .|.. +.++.|+ +++. ..++. .+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~----~vl~--~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGF----TVLD--IDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCC----eEEe--hhhhhccCCceEEEee---hh
Confidence 4478999999999999999887 4579999999 7744 3444443 3332 22232 2368999998 23
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+..-..+..+++.+++.|+|+|++|+...
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 344445678899999999999999886543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-07 Score=82.67 Aligned_cols=124 Identities=18% Similarity=0.251 Sum_probs=83.2
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCccc----HHHHHHHHcC-----CCeEEEEech-HHHHHHHHHHH-----
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG----ILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLVK----- 121 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G----~ls~~~a~~g-----~~~V~avD~s-~~~~~a~~~~~----- 121 (391)
+.|....+.+.+.+... ...-+|+..||.|| .+++.+.+.. .-+|+|+|+| .+++.|++-+-
T Consensus 97 FRd~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~ 173 (287)
T PRK10611 97 FREAHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEEL 173 (287)
T ss_pred cCCcHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHH
Confidence 34444444444443221 22369999999999 4666666642 1279999999 89999876420
Q ss_pred -------------H-----cC-------CCCcEEEEEcccccCCC--CCcccEEEEcc-ccccccCcchHHHHHHHHhcc
Q 016320 122 -------------A-----NN-------LQDVVEVIEGSVEDIVL--PEKVDVIISEW-MGYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 122 -------------~-----~~-------~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~ 173 (391)
. .+ +.+.|+|.+.|+.+.+. .++||+|+|.. +.|+ .......++..+.+.
T Consensus 174 r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 174 KTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DKTTQERILRRFVPL 251 (287)
T ss_pred hcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHH
Confidence 0 01 23468888889887443 38999999943 3333 233578899999999
Q ss_pred ccCCeEEEcccc
Q 016320 174 LKPTGVMYPSHA 185 (391)
Q Consensus 174 LkpgG~~i~~~~ 185 (391)
|+|||.++....
T Consensus 252 L~pgG~L~lG~s 263 (287)
T PRK10611 252 LKPDGLLFAGHS 263 (287)
T ss_pred hCCCcEEEEeCc
Confidence 999999876643
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=72.33 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
...+.+...+....+.-|||+|.|||.++..+.++|. ..++++|.| +......+... .++++.+|..++.
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHH
Confidence 3345566666667788999999999999999999874 479999999 88776665432 2789999998875
Q ss_pred -C----CCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 -L----PEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~----~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ...||.|+|-. +..+.. ..-..+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~--~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPM--HRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcH--HHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 26799999953 222222 23456788888889999988744
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=75.55 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC-CCcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL-PEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~-~~~~ 145 (391)
....+++||||.-||.-++..|.+ --.+|+++|++ ...+.+.+..+..|..++|++++++..+. .. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 356789999999999988888876 22379999999 89999999999999999999999987663 11 3789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+++.+. +.......+..+.++||+||+++.....+..
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999743 1112235677778999999998877665555
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=76.24 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=78.6
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~Ivs~~~ 153 (391)
..+||||||.|.+...+|+.. -..++|||+. ..+..|.+.+.+.++.| +.+++.|+..+- .+ ++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999988888874 4479999999 88899999999999963 999999998752 23 48888876332
Q ss_pred ccccc--C---cchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLL--R---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~--~---e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....- + .-..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 22111 1 112467888999999999998754
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=74.38 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=52.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
.++.+|.|+|||.+.++..+. .+. +|...|+-. .| -.++.+|+..++++ +.+|++|+-+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n-----~~Vtacdia~vPL~~~svDv~VfcL--- 130 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN-----PRVTACDIANVPLEDESVDVAVFCL--- 130 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS-----TTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC-----CCEEEecCccCcCCCCceeEEEEEh---
Confidence 345799999999999985543 233 599999852 11 14677999999988 8999998732
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.|-+ ..+..++.+..|+|||||.+.+...
T Consensus 131 SLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 131 SLMG-TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp ---S-S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhC-CCcHHHHHHHHheeccCcEEEEEEe
Confidence 1112 2467789999999999999776543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=74.24 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCC--eEEEEech-HHHHHHHHHHHHcC--------C-CCcEEEEEcccccCCCC
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GAR--KVYAVEAT-KMSDHARTLVKANN--------L-QDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~--~V~avD~s-~~~~~a~~~~~~~~--------~-~~~v~~~~~d~~~~~~~ 142 (391)
..+|.+.||+|+|||.|+.++++. |+. .+.|||.- +.++.+++++.+.- + ...+.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 578999999999999999988865 332 34899998 99999999887643 1 13478899999987655
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+||.|.+ +.. ...+.+++...|++||.++
T Consensus 160 ~a~YDaIhv---GAa------a~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHV---GAA------ASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEE---ccC------ccccHHHHHHhhccCCeEE
Confidence 89999997 311 1122333444577777655
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-06 Score=73.35 Aligned_cols=95 Identities=28% Similarity=0.360 Sum_probs=66.5
Q ss_pred EEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccccc
Q 016320 82 VLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLL 158 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~ 158 (391)
|.||||-.|.+++.+.+.|. .+|+|+|++ .-++.|+++++.+++.++|+++.+|-.+.-.+ +..|+||...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 68999999999999999974 479999999 88999999999999999999999996653333 448998876665442
Q ss_pred CcchHHHHHHHHhccccCCeEEE
Q 016320 159 RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...++.+....++....+|
T Consensus 80 ----I~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEE
T ss_pred ----HHHHHHhhHHHhccCCeEE
Confidence 4556666555554443444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.2e-07 Score=86.73 Aligned_cols=121 Identities=16% Similarity=0.251 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCC--CCC--CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 63 MDAYFNSIFQNKHH--FQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~--~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
-..|.+.|.+.+.. ..+ .++||+|||+|.++..+...+.. +..+-.+..-+...+.+.+.|+...+.+ .-...
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRGvpa~~~~--~~s~r 174 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERGVPAMIGV--LGSQR 174 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcCcchhhhh--hcccc
Confidence 35677777776654 222 57999999999999999988652 3333332111222233344555422221 12356
Q ss_pred CCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 139 IVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 139 ~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
++++ ..||+|-|.-.. ..+...-..++-++.|+|+|||+++.+....+
T Consensus 175 LPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 175 LPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 6777 899999983211 11111113467788999999999998877776
|
; GO: 0008168 methyltransferase activity |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=72.86 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----cC----------------------------
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----NN---------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----~~---------------------------- 124 (391)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-...-.... +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347899999999999999999999 69999999 886554443321 00
Q ss_pred -------CCCcEEEEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 125 -------LQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 -------~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...++....||+.++-.+ ++||+|++ .++++....+-.+++.+.++|||||+.|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 012355556666665333 58999997 4666666667788999999999999766
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.7e-06 Score=72.25 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=61.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHH-HcCCCeEEEEech-HHHHHHHHHH-------HHcCC-CCcEEEEEcccccC
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSA-QAGARKVYAVEAT-KMSDHARTLV-------KANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~d~~~~ 139 (391)
|.+.+...++.+.+|||||.|...+.+| ..+.++++|||+. ...+.|+... +..+. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 3344556678999999999999877655 4588789999998 6666554432 23333 24588999998764
Q ss_pred CCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 140 VLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+.. ...|+|+++.. ...+ .+..-+.....-||+|.++|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~---~F~~-~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT---CFDP-DLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHGHC-SEEEE--T---TT-H-HHHHHHHHHHTTS-TT-EEE
T ss_pred HhHhhhhcCCCEEEEecc---ccCH-HHHHHHHHHHhcCCCCCEEE
Confidence 321 46899998542 2233 34444566667789998877
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-05 Score=72.80 Aligned_cols=103 Identities=21% Similarity=0.021 Sum_probs=76.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
...++||-||.|.|.....+.++.. +|+-||++ .+++.+++..... ++ +.+++++.. +.+. ..++||+||++.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 3458999999999999999999864 89999999 8999999854321 22 346777752 2221 137899999975
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~ 190 (391)
+ . -+.+.+.+++.|+|||+++....+.+..
T Consensus 148 ~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 148 E----P----DIHKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred C----C----ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence 3 1 1456788899999999999887766653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=71.91 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
....+|.|+|||-+.++. .. ...|+..|+-. .+ -.++.+|+.+++++ +++|++|+-+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------~~-----~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------VN-----ERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec----------CC-----CceeeccccCCcCccCcccEEEeeH---
Confidence 345789999999988765 22 22688888741 11 46788999999888 8999988622
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+-.. .+..++.+++|+|++||.+.+...
T Consensus 237 SLMgt-n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 237 SLMGT-NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred hhhcc-cHHHHHHHHHHHhccCceEEEEeh
Confidence 11122 467889999999999998655433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8e-06 Score=76.35 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCC
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPE 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~ 143 (391)
.+.+.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .+++.|++.+.. .++++++++|+.++. +++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc
Confidence 34444555677899999999999999999884 3589999999 999999987754 356999999998863 222
Q ss_pred ---cccEEEEcc
Q 016320 144 ---KVDVIISEW 152 (391)
Q Consensus 144 ---~~D~Ivs~~ 152 (391)
++|.|+.++
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 799999865
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-06 Score=81.99 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=67.2
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..--+.+...|.+......++.+||+.||||.+++.+|+. +++|+|||++ +.++.|+++++.||+.| .+|+++-.++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3445566677888877778899999999999999999865 6689999999 99999999999999987 9999997666
Q ss_pred C
Q 016320 139 I 139 (391)
Q Consensus 139 ~ 139 (391)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 5
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.4e-05 Score=69.63 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=82.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 142 (391)
..|...+...+|.+|++-|+|+|.++.+++++ .-.+++..|.. .-.+.|++..+..++.+++++.+.|+...-+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 45667777889999999999999999999997 23589999999 78899999999999999999999999876543
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
..+|.|+.++.... + .++ .+.+.||.+|.
T Consensus 175 s~~aDaVFLDlPaPw---~-AiP----ha~~~lk~~g~ 204 (314)
T KOG2915|consen 175 SLKADAVFLDLPAPW---E-AIP----HAAKILKDEGG 204 (314)
T ss_pred ccccceEEEcCCChh---h-hhh----hhHHHhhhcCc
Confidence 68999998764322 2 223 23346777663
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-06 Score=72.39 Aligned_cols=94 Identities=31% Similarity=0.366 Sum_probs=58.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C---CCc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L---PEK 144 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~---~~~ 144 (391)
++.+||||||++|.++..+.+.+ ..+|+|+|+..+ ... ..+..+++|+.+.. + .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999997 568999999843 111 22677777765431 1 158
Q ss_pred ccEEEEccccccccC----c----chHHHHHHHHhccccCCeEEEc
Q 016320 145 VDVIISEWMGYFLLR----E----SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~----e----~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|+|+........ + ......+..+..+|+|||.++.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 999999873222111 1 1122233344577999998774
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-05 Score=73.00 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~ 154 (391)
..++.++|||||++|.++..+++.|+ +|+|||...|.... .. ..+|+.+.+|...... .+.+|+++|+...
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 35789999999999999999999999 89999976654332 12 2348888888776654 5789999998742
Q ss_pred ccccCcchHHHHHHHHhccccCC
Q 016320 155 YFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
.+..+.+-+.++|..|
T Consensus 281 -------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 -------KPARVAELMAQWLVNG 296 (357)
T ss_pred -------CHHHHHHHHHHHHhcC
Confidence 2445666677788776
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=74.21 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
...+.|.+.+...++..|||||+|+|.++..+++.+ ++|+++|.+ .+++..++... ...+++++++|+.++..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 344445555555578999999999999999999998 589999999 88888887654 2345999999999987654
Q ss_pred ----cccEEEEcc
Q 016320 144 ----KVDVIISEW 152 (391)
Q Consensus 144 ----~~D~Ivs~~ 152 (391)
....|++++
T Consensus 93 ~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 93 LLKNQPLLVVGNL 105 (262)
T ss_dssp HCSSSEEEEEEEE
T ss_pred hhcCCceEEEEEe
Confidence 566788765
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=65.74 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=58.9
Q ss_pred CCCCEEEEECCcccHHHHHHHH-----cCCCeEEEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCCCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQ-----AGARKVYAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~-----~g~~~V~avD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
.+...|+|+|||.|.++..++. ....+|++||.+ ..++.|.++.+..+ +..++++..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5568999999999999999998 433489999999 88899998888877 545577887777665444667788
Q ss_pred EE
Q 016320 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 76
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.4e-05 Score=77.30 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+..+||||||.|-+...+|+.. -..++|+|+. ..+..|.+.+...++.| +.++..|+..+. ++ +++|-|....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45789999999999998888874 3479999999 77777777778888876 888888875432 33 7799888743
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~--~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....- +. -.-+.+++.+.++|+|||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 322211 11 12467888999999999987654
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=70.16 Aligned_cols=117 Identities=21% Similarity=0.162 Sum_probs=88.0
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-C
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-E 143 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~ 143 (391)
..+...+|.+|||+.++.|.=+..+|+... ..|+|+|.+ .-+...++++++.|+.+ +.+++.|...+. .. +
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccC
Confidence 345567889999999999988777777632 357999999 88999999999999988 788888876542 12 3
Q ss_pred cccEEEEcccccccc---------Cc----------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 144 KVDVIISEWMGYFLL---------RE----------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~---------~e----------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
+||.|+.+....... +. .....+|....++|||||.++.+.+++..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 699999876433211 00 12356788889999999999988887654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8e-05 Score=67.30 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc------C--CCCcEEEEEcccc
Q 016320 69 SIFQNKHHFQGK--TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN------N--LQDVVEVIEGSVE 137 (391)
Q Consensus 69 ~i~~~~~~~~~~--~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~~ 137 (391)
.|.++....++. +|||+-+|+|..++.++..|++ |+++|.+ .+....++.++.. + +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 344444455665 8999999999999999999995 9999999 7777777777663 2 2256999999987
Q ss_pred cCC--CCCcccEEEEcccccc
Q 016320 138 DIV--LPEKVDVIISEWMGYF 156 (391)
Q Consensus 138 ~~~--~~~~~D~Ivs~~~~~~ 156 (391)
++- .+..||+|..++|...
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCC
Confidence 752 3357999999987433
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-05 Score=67.69 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=65.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Ccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-~~~ 145 (391)
.++.+|+|||+-.|.++..+++. +. ..|+|||+.+|-. ..+ |.++++|+++-. ++ .++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------IPG-VIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------CCC-ceEEeeeccCccHHHHHHHHcCCCCc
Confidence 35689999999999999999987 33 2499999985421 223 899999998753 23 457
Q ss_pred cEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016320 146 DVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+|+|+......... ......++-...+|+|||.++.
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 999998754221111 1123345555789999998874
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.4e-05 Score=68.93 Aligned_cols=74 Identities=28% Similarity=0.363 Sum_probs=48.6
Q ss_pred CCEEEEECCccc-HHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEccccc-C----CC-CCcccEE
Q 016320 79 GKTVLDVGTGSG-ILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVED-I----VL-PEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcG~G-~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~----~~-~~~~D~I 148 (391)
..++||||||.. +..+..++. |. +++|.|++ ..++.|+++++.| +++++|+++...-.. + .. .+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 358999999986 456665554 66 79999999 8999999999999 999999998764322 1 11 2689999
Q ss_pred EEccc
Q 016320 149 ISEWM 153 (391)
Q Consensus 149 vs~~~ 153 (391)
+|++.
T Consensus 182 mCNPP 186 (299)
T PF05971_consen 182 MCNPP 186 (299)
T ss_dssp EE---
T ss_pred ecCCc
Confidence 99884
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=63.84 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=50.0
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
++||+|||.|.++..+++.+.. +|+++|++ .+.+.++++++.|++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999988654 89999999 99999999999998865 8888877655
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=67.42 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..|......+...+|||+|||+|.-...+... ...+++++|.| .|++.++..++................+...-.+
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP 102 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC
Confidence 34444455677789999999999765555443 35589999999 9999999887654321111111111111111134
Q ss_pred ccEEEEc-cccccccCcchHHHHHHHHhccccC
Q 016320 145 VDVIISE-WMGYFLLRESMFDSVICARDRWLKP 176 (391)
Q Consensus 145 ~D~Ivs~-~~~~~l~~e~~~~~~l~~~~~~Lkp 176 (391)
.|+|++. .++... . .....+++.+-..+++
T Consensus 103 ~DLvi~s~~L~EL~-~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 103 DDLVIASYVLNELP-S-AARAELVRSLWNKTAP 133 (274)
T ss_pred CcEEEEehhhhcCC-c-hHHHHHHHHHHHhccC
Confidence 5999983 222222 2 3455666666555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.1e-05 Score=70.83 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~ 137 (391)
+.+.+.+...++.+|+|-.||+|.+...+.+. ...+++|+|++ .++..|+.++...+.... ..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 44445555566778999999999998777762 34489999999 888888877766665432 458888875
Q ss_pred cCCC---CCcccEEEEccccccc--cCc----------------chHHHHHHHHhccccCCeEEE
Q 016320 138 DIVL---PEKVDVIISEWMGYFL--LRE----------------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~---~~~~D~Ivs~~~~~~l--~~e----------------~~~~~~l~~~~~~LkpgG~~i 181 (391)
.... ..+||+|++++.-... ... ..-..++..+.+.|+++|++.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 5432 2689999998631111 000 011235566678899999754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.1e-06 Score=64.31 Aligned_cols=98 Identities=30% Similarity=0.448 Sum_probs=43.4
Q ss_pred EEECCcccHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEccccc
Q 016320 83 LDVGTGSGILAIWSAQA----GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGY 155 (391)
Q Consensus 83 LDlGcG~G~ls~~~a~~----g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~ 155 (391)
||||+..|..+..+++. +..+++++|.....+.+++.+++.++.++++++.++..+. .++ +++|+|+.+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999888777764 2237999999943556666666677777899999998765 233 7899999865211
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
. ......+..+.+.|+|||++++..
T Consensus 81 ~----~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 Y----EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp H----HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred H----HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 234445777788999999998764
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.7e-05 Score=58.92 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
..++++|+|||++.|-.++.++-.||++|+++|++ .+.+..+++++.+.+=++..-. + +++-. ++||+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccccCCCcceEEEE
Confidence 46789999999999999999999999999999999 8889999988877543322111 1 23222 789988863
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=68.53 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=86.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 147 (391)
+...++..|||+.++.|.=+..+++. +...|+|.|++ .-+...+.++++.|..+ +.++..|..... ....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccch
Confidence 34568899999999999988887776 24589999999 88899999999999876 777778887762 2246999
Q ss_pred EEEcccccccc--C----------cc-------hHHHHHHHHhccc----cCCeEEEcccceeE
Q 016320 148 IISEWMGYFLL--R----------ES-------MFDSVICARDRWL----KPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~l~--~----------e~-------~~~~~l~~~~~~L----kpgG~~i~~~~~~~ 188 (391)
|+.+....... . +. ....+|+...+++ ||||+++.+.+++.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 99876433321 0 01 1346677888999 99999998877664
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=68.71 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=75.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~ 158 (391)
...+|+|.|.|.++..+... +.+|-+++.. +.+..++.... .| |+.+.+|+.+- .| +-|+|+.-|+.+.+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC-CcCeEEEEeecccCC
Confidence 78999999999998888874 5579999999 66555554443 33 78888998775 43 567999988777766
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 159 RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ ++..+|+.++..|+|+|.++....
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 65 577899999999999999876544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.1e-05 Score=67.71 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~Ivs~ 151 (391)
...+|+|.-||.|.-++..|..++ .|++||++ --+..|+.+++-.|++++|+|++||+.++- +. ..+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999988888887777 79999999 789999999999999999999999998862 22 345677643
Q ss_pred cccccccCcchHHHHHHHHhccccCCeE
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+ -+.+.+-+..-+..+..+++|.|.
T Consensus 173 p---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 P---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred C---CCCCcchhhhhhhhhhhhcchhHH
Confidence 2 122222222223344556666643
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.4e-05 Score=66.42 Aligned_cols=114 Identities=16% Similarity=0.288 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDI 139 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~ 139 (391)
+....+.+......++.||++|.| +|+-++++|.. ..+.|...|-+ ..++..++....|.... ++.++.-+...-
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 333445554445667899999999 47777777765 55689999999 88888888887763322 122222222111
Q ss_pred ---CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 140 ---VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ---~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.....||+|+| ..++.....-.++.+.+.++|+|.|..+
T Consensus 96 qsq~eq~tFDiIla---ADClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 96 QSQQEQHTFDIILA---ADCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHHHhhCcccEEEe---ccchhHHHHHHHHHHHHHHHhCccccee
Confidence 12258999998 3334444456788899999999999854
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=70.46 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------C-----------C
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----------------Q-----------D 127 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----------------~-----------~ 127 (391)
..++.++||||||+-+.....|..-+++|+..|.+ ...+..++-++..+- . .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 45678999999999776555555556689999998 666555444432210 0 1
Q ss_pred cE-EEEEcccccCC-------CCCcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 128 VV-EVIEGSVEDIV-------LPEKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ~v-~~~~~d~~~~~-------~~~~~D~Ivs~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.| .++.+|+.+.. +|.++|+|++-.... .-.........++.+.++|||||.+|..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 23 47788887742 234699999843211 1112234566778888999999998854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00054 Score=60.66 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=73.4
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
...+..+|..- +...+|.+||-||+.+|.....++.. | -..|+|||.| ...+.....+++. .+|-.+.+|+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA 131 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA 131 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence 34556666543 34567899999999999988888875 4 4479999999 5544444445443 3377778888
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +-+.+|+|+++.. .. .....+...+..+||+||.+++.
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa----Qp-~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA----QP-DQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S----ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCC----Ch-HHHHHHHHHHHhhccCCcEEEEE
Confidence 7642 2278999999752 12 23556667777899999998865
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=63.51 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHH-HHHHHHc-CC-CeEEEEech-HHHHHHHHHHH-HcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016320 79 GKTVLDVGTGSGIL-AIWSAQA-GA-RKVYAVEAT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcG~G~l-s~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~ 152 (391)
.++|+=||||.=.+ ++.+++. +. ..|.++|++ +.++.+++.++ ..++..+++|+.+|..+.... ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999998555 4556654 32 369999999 89999999888 677888899999999877544 7899998633
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+- .........++..+.+.++||+.++..
T Consensus 201 lV--g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LV--GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hc--ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 21 111224678999999999999988865
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00055 Score=56.79 Aligned_cols=99 Identities=26% Similarity=0.300 Sum_probs=65.2
Q ss_pred EEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCCC--cccEEEEcccc
Q 016320 82 VLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLPE--KVDVIISEWMG 154 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~--~~D~Ivs~~~~ 154 (391)
++|+|||+|... .+++... ..++++|.+ .++..++.......... +.++..+... +++.. .+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444322 269999999 88877554443221111 6788888776 55553 79999432211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+. .. ....+..+.+.|+|+|.++.....
T Consensus 130 ~~---~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HL---LP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hc---CC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 11 11 567788899999999988766444
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=66.12 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=83.0
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH--H---HcCC-CCcEEEEEcccccCCC--CCcccEEE
Q 016320 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV--K---ANNL-QDVVEVIEGSVEDIVL--PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~--~~~~D~Iv 149 (391)
.+||-+|.|.|+-...+.+.. ..+|+-||.+ +|++.++++. . .+.+ +.+++++..|..++-- .+.||.||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 689999999999999999984 7799999999 9999988432 2 1222 3479999999888632 27999999
Q ss_pred EccccccccCcc--hHHHHHHHHhccccCCeEEEcccceeEEeec
Q 016320 150 SEWMGYFLLRES--MFDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 150 s~~~~~~l~~e~--~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 192 (391)
.+.....-.... .-..+...+++.|+++|.++......|..|-
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 876433222111 1234556677899999999988777776543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00027 Score=72.21 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC---------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGA---------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL 141 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~---------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~ 141 (391)
...+|||.+||+|.+...+++... ..++|+|++ .++..++.++...+. ..+.+...|.... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 346899999999999888776421 368999999 888999888876651 1255665654321 11
Q ss_pred CCcccEEEEccc
Q 016320 142 PEKVDVIISEWM 153 (391)
Q Consensus 142 ~~~~D~Ivs~~~ 153 (391)
.++||+||+++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999884
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=61.64 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccC-
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDI- 139 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~- 139 (391)
..|...+ .++..++|+|||+|.-+..+.++ + ..+.++||+| ++++.+.+.+....++. .+.-+++|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3444443 35568999999999765443332 1 2369999999 99999988887333433 244488888653
Q ss_pred ---CC---CCcccEEEEccccccccCc--chHHHHHHHHhc-cccCCeEEEcc
Q 016320 140 ---VL---PEKVDVIISEWMGYFLLRE--SMFDSVICARDR-WLKPTGVMYPS 183 (391)
Q Consensus 140 ---~~---~~~~D~Ivs~~~~~~l~~e--~~~~~~l~~~~~-~LkpgG~~i~~ 183 (391)
+. +....+++. +++.+.+- .....+++.+.+ .|+||+.+++.
T Consensus 146 ~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 234567766 33332221 224577888888 99999988764
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00053 Score=56.54 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=58.8
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC-cccEEEEccccccccCcch-------HHHHHHHHh
Q 016320 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE-KVDVIISEWMGYFLLRESM-------FDSVICARD 171 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~-~~D~Ivs~~~~~~l~~e~~-------~~~~l~~~~ 171 (391)
+|+|.|+. ++++..+++.++.++.+++++++.+-+++.. ++ ++|+++-++ ||....+.. .-..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 9999999999999998899999988777642 34 899999875 777665421 223466667
Q ss_pred ccccCCeEEEcccc
Q 016320 172 RWLKPTGVMYPSHA 185 (391)
Q Consensus 172 ~~LkpgG~~i~~~~ 185 (391)
++|+|||++++..+
T Consensus 80 ~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 80 ELLKPGGIITIVVY 93 (140)
T ss_dssp HHEEEEEEEEEEE-
T ss_pred HhhccCCEEEEEEe
Confidence 89999999886533
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=67.49 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++..++|+|||.|..+...+..+...+++++.+ -.+..+........+.++..++.+|+.+.+++ ..||.+-+ .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~---l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF---L 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE---E
Confidence 4566899999999999999998876689999999 66666666666666766667788888887766 78999987 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
....+......++.+++|.++|||.++....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 2334445677889999999999999886544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=55.90 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=77.3
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
...+...+..+.+|||+|.|.+.+.+++.|....+|+|.+ =.+.+++-.+-+.++.....|...|+..+++. .|..++
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vv 143 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVV 143 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEE
Confidence 4444455656799999999999999999998789999999 67788888888888888899999998887663 444443
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ...|..++.+-+++..-|..+..++-+
T Consensus 144 i------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 144 I------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred E------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 2 112334555556665556667666643
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0027 Score=56.04 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccEEEEccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Ivs~~~~~ 155 (391)
+..+.||||-.+.|...+.+.+ +..+++.|++ .-++.|.+++.++++.+++++..+|.... .....+|+|+...||-
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 4459999999999999999885 5689999999 88999999999999999999999998553 3335899998766654
Q ss_pred cccCcchHHHHHHHHhcccc
Q 016320 156 FLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~Lk 175 (391)
.+ ...++++....|+
T Consensus 97 ~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 97 TL-----IREILEEGKEKLK 111 (226)
T ss_pred HH-----HHHHHHHhhhhhc
Confidence 32 3445555444444
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0031 Score=55.27 Aligned_cols=104 Identities=28% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+|.+||+||-|-|+..-++.++...+=+.||.. ..++..++..-. -.++|.++.+..++.. ++ +.||-|.-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec
Confidence 6789999999999999999988877778889999 777665543311 1245788887766642 33 7899999755
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+ ...| ++..+.+.+.++|||+|++-....
T Consensus 178 y~--e~yE-dl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 178 YS--ELYE-DLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hh--hHHH-HHHHHHHHHhhhcCCCceEEEecC
Confidence 32 2333 566778888999999998765433
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0024 Score=56.30 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=64.1
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcE
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----A-GARKVYAVEAT-KMSDHARTLVKANNLQDVV 129 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~----~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v 129 (391)
+++.+...-.|.+.|-+. +++.|+++|.-.|.-+++.|. . +..+|++||++ .. ..++..+...+.++|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCce
Confidence 345566666677766654 668999999999876666554 2 34589999996 42 223334445566789
Q ss_pred EEEEcccccCC-------C--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 130 EVIEGSVEDIV-------L--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 130 ~~~~~d~~~~~-------~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++++||..+.. . +....+|+-+. .-.++..+ ..|+....++++|+++|+.+..
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~~hvl-~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS---SHTHEHVL-AELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHH-HHHHHHHHT--TT-EEEETSHH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC---CccHHHHH-HHHHHhCccCCCCCEEEEEecc
Confidence 99999987652 1 12344666443 22223333 4466688999999998876554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=63.77 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC--CCCcccEEEEcc
Q 016320 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
+.+|||.=+|+|+=++..++. +..+|++-|+| ++++.++++++.|++++ ++++.+.|+..+- ..+.||+|=.++
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 468999999999999887776 67799999999 99999999999999998 7999999988764 458999998776
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++. ...+++...+.++.||.+.+.
T Consensus 130 fGS-------p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 FGS-------PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------ccHhHHHHHHHhhcCCEEEEe
Confidence 543 346788888889999988755
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0036 Score=54.36 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 62 RMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
+...+..+|..- ++..++.+||=||+-+|.-...++.- |...|||||.| .+.......+++. +++-.+.+|+
T Consensus 57 ~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA 133 (231)
T COG1889 57 RRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDA 133 (231)
T ss_pred chhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeeccc
Confidence 345566666543 34567899999999999987777775 65579999999 6544444444332 3367777888
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+... +-+.+|+|..+... .+...-+......+||++|.+++.
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEE
Confidence 7642 22789999986521 123455667778999999977654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0026 Score=62.48 Aligned_cols=99 Identities=16% Similarity=0.309 Sum_probs=73.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH-HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc-cccc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR-TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYF 156 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~-~~~~ 156 (391)
++|-+|||.--++..+-+.|...|+-+|.| -.+..+. .+++.+ .-..+...|+..+.++ ++||+|+-.. +...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCccccc
Confidence 899999999999999999999999999999 4443333 222222 2278999999999888 8999999843 3333
Q ss_pred ccCcch------HHHHHHHHhccccCCeEEEc
Q 016320 157 LLRESM------FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 157 l~~e~~------~~~~l~~~~~~LkpgG~~i~ 182 (391)
+..+.. ....+..+.++|++||+.+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 333322 34557778899999998653
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0041 Score=59.78 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~ 147 (391)
+...+|.+|||+.+-.|.=+..+|.. +-..|+|.|.+ .-+.....++.+.|+.+ ..+...|..+++ ++++||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence 44568899999999998766555554 44479999999 88999999999999876 566667776653 3458999
Q ss_pred EEEcccccc--ccCc-----------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 148 IISEWMGYF--LLRE-----------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivs~~~~~~--l~~e-----------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
|+.+..... +... .....++.....++++||+++-+.+++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 997654333 1111 12345566677899999999988887765
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.012 Score=53.02 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=58.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccE
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDV 147 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 147 (391)
......|++||-||-.. +.|+.+|-. ..++|+.+|++ .+++..++.+++.|++ |+.++.|+++--++ ++||+
T Consensus 39 ~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 39 ERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp HTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred hcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence 33457899999999776 445554443 45689999999 9999999999999998 99999999884222 89999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCe
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG 178 (391)
+++++. +-+ .-+..++......||..|
T Consensus 116 f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred EEeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 999884 322 234556666666777655
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0003 Score=64.38 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=77.2
Q ss_pred CCCEEEEECCcccHHHH-HHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~-~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.+.+|.|+-+|-|.+++ ++..+||+.|+|+|.+ ..++..+++++.|+..++..++.+|.+...+....|-|.. +-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL---GL 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL---GL 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee---cc
Confidence 45789999999999999 8899999999999999 8999999999999988888888999888877788898874 44
Q ss_pred cccCcchHHHHHHHHhccccCCeE-EE
Q 016320 156 FLLRESMFDSVICARDRWLKPTGV-MY 181 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~-~i 181 (391)
....+.-..... ++|+|.|- ++
T Consensus 271 lPSse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 271 LPSSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred ccccccchHHHH----HHhhhcCCcEE
Confidence 444444444333 45666544 44
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00016 Score=62.61 Aligned_cols=92 Identities=26% Similarity=0.316 Sum_probs=61.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-ccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS-EWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs-~~~~~ 155 (391)
.+.++||+|+|.|-++..++.. ..+|+|.|.| .|....+++ ++. .+..+. -....-++|+|.| +.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn-Vl~~~e----w~~t~~k~dli~clNlL-- 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN-VLTEIE----WLQTDVKLDLILCLNLL-- 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc-eeeehh----hhhcCceeehHHHHHHH--
Confidence 3479999999999999988866 4479999999 887765542 221 111111 1112247999998 333
Q ss_pred cccCcchHHHHHHHHhccccC-CeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKP-TGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~Lkp-gG~~i~~ 183 (391)
..--+.-.+++.+..+|+| +|.+|..
T Consensus 180 --DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 --DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred --HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 2223456778888889999 7887754
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=53.64 Aligned_cols=96 Identities=25% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-ccccC--------CCC-C
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG-SVEDI--------VLP-E 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~-~ 143 (391)
..++.+|||+||..|.++..+.+. ....|.|||+-... .. ..++++++ |+++. .+| .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence 357899999999999999999887 24479999985211 11 12566666 66653 134 6
Q ss_pred cccEEEEcccccc-----ccCcch---HHHHHHHHhccccCCeEEEc
Q 016320 144 KVDVIISEWMGYF-----LLRESM---FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivs~~~~~~-----l~~e~~---~~~~l~~~~~~LkpgG~~i~ 182 (391)
++|+|+|+....- ..+... ..+++.-....++|+|.++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 8999999764321 111111 12233333467789998774
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0095 Score=55.21 Aligned_cols=120 Identities=22% Similarity=0.172 Sum_probs=73.5
Q ss_pred hHhHHHHHHHHHhcCCCC-------CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-
Q 016320 60 RVRMDAYFNSIFQNKHHF-------QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE- 130 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~-------~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~- 130 (391)
..|...|...|.+.-... ...+||-=|||.|.|+..++..|. .+-|=|.| -|+-...=.+..-..++.++
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 455555555554443222 246899999999999999999998 47888998 67544332221111112111
Q ss_pred --E------------------------------------EEcccccCCCC----CcccEEEEccccccccCcchHHHHHH
Q 016320 131 --V------------------------------------IEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVIC 168 (391)
Q Consensus 131 --~------------------------------------~~~d~~~~~~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~ 168 (391)
+ ..||+.+.-.. +.||+|+. .++.......-.+++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHH
Confidence 1 22333332111 36999986 355554445566789
Q ss_pred HHhccccCCeEEEcc
Q 016320 169 ARDRWLKPTGVMYPS 183 (391)
Q Consensus 169 ~~~~~LkpgG~~i~~ 183 (391)
.+.+.|||||+.|--
T Consensus 281 tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 281 TIYKILKPGGVWINL 295 (369)
T ss_pred HHHHhccCCcEEEec
Confidence 999999999987743
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0022 Score=60.09 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=66.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED--IVLP- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~- 142 (391)
..+......+..++|||+|.|.|.-...+-.. -.+.++.+|.|..+...-..+.+|-...+......|+.. ++++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 34444456677789999999988765444433 234688888885555544445555443333333444433 2233
Q ss_pred -CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 -EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..|++++. +...+. .+..+...++.+..++.|||.+++.
T Consensus 183 ad~ytl~i~--~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 183 ADLYTLAIV--LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cceeehhhh--hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 55666654 222222 2233455778888899999988754
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00073 Score=61.77 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=70.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
.+..+||+|||.|-.... .....+.++|.+ ..+..|++. +...+..+|+..++.+ ..||.+++..+-+
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 478999999999855321 122368999999 777666542 1125777898888776 8999999976666
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++....--..+++++.+.|+|||..++
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 666665667889999999999998664
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0095 Score=56.01 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=64.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~ 141 (391)
.+.+.+...++..++|.=+|.|..+..+++. +..+|+|+|.+ .+++.|++..+.. .+++++++++..++. .
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 3444555567889999999999999998876 34689999999 8999998887654 457999999988752 1
Q ss_pred C-CcccEEEEcc
Q 016320 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivs~~ 152 (391)
+ .++|.|+.++
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 2 5799999865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0086 Score=54.92 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=65.1
Q ss_pred CEEEEECCcc--cHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------------CC
Q 016320 80 KTVLDVGTGS--GILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------------VL 141 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~~ 141 (391)
...||||||- -.....+|+. ...+|+-||.+ -.+.+++.....+.- ....++++|+++. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 6799999994 2234555554 34489999999 677888888766532 2478999999874 23
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.+++-+++...+. ++..+.....++..+...|.||.+++++..+.
T Consensus 149 ~rPVavll~~vLh-~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVLH-FVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-GG-GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeeec-cCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 3566666666554 44454568899999999999999999886653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0026 Score=59.47 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHH-------HHHHHHHHcCCCC-cEEEEEcccccCCCC--Cc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSD-------HARTLVKANNLQD-VVEVIEGSVEDIVLP--EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~~~--~~ 144 (391)
..+|+.|.|=--|||.+...+|..|+ .|+|.|++ .++. ..+.+.+++|... -+.++.+|...-.+- ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 46789999999999999999999999 79999999 7765 2466777877543 256777887765443 68
Q ss_pred ccEEEEcc
Q 016320 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivs~~ 152 (391)
||.|||++
T Consensus 285 fDaIvcDP 292 (421)
T KOG2671|consen 285 FDAIVCDP 292 (421)
T ss_pred eeEEEeCC
Confidence 99999987
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=53.36 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
+.+.+.+...+ .+..+|+|||||.=.+++...... ...++|+|++ .+++...+.....+.. .++...|...-..
T Consensus 93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 44444444432 236899999999988888655442 2389999999 9999999998888876 6666668776655
Q ss_pred CCcccEEEE
Q 016320 142 PEKVDVIIS 150 (391)
Q Consensus 142 ~~~~D~Ivs 150 (391)
+...|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 688999986
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0061 Score=53.87 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=58.4
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~~~~ 155 (391)
.++|||||=+..... ...+.-.|++||++.. + -.+.+.|+.+.++| ++||+|++.++-.
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~--------------~-~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ--------------H-PGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC--------------C-CCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 689999997544322 2234446999999730 0 35667788777654 7999999977655
Q ss_pred cccCcchHHHHHHHHhccccCCeE
Q 016320 156 FLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+......--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 554444556788889999999998
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0075 Score=53.36 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=65.4
Q ss_pred CCCCC-CEEEEECCcccHHHHHHHHcC--------C--CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016320 75 HHFQG-KTVLDVGTGSGILAIWSAQAG--------A--RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 75 ~~~~~-~~VLDlGcG~G~ls~~~a~~g--------~--~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 140 (391)
+.++| ++|+||.+..|.++..+++.- . ++|++||+..|+- ++. |.-+++|++...
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHH
Confidence 34455 689999999999999988751 1 1399999986542 333 788889998753
Q ss_pred -----CC-CcccEEEEccccccc-cCc-------chHHHHHHHHhccccCCeEEE
Q 016320 141 -----LP-EKVDVIISEWMGYFL-LRE-------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 -----~~-~~~D~Ivs~~~~~~l-~~e-------~~~~~~l~~~~~~LkpgG~~i 181 (391)
+. ++.|+|||+...... .++ ..+...|.-...+|||||.|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 33 699999997543221 111 112334455578999999987
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=53.08 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=48.6
Q ss_pred HHhcCCCCCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHH---HHHHHHHHHcCCC-----CcEEEEEccccc
Q 016320 70 IFQNKHHFQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMS---DHARTLVKANNLQ-----DVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~--~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~---~~a~~~~~~~~~~-----~~v~~~~~d~~~ 138 (391)
+.++....++ .+|||.-+|-|.-++.+|..|+ +|+++|.| -+. ..+.++....... .+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 3444444444 4899999999999999998898 69999999 433 3333344333221 369999999887
Q ss_pred C-CC-CCcccEEEEccccc
Q 016320 139 I-VL-PEKVDVIISEWMGY 155 (391)
Q Consensus 139 ~-~~-~~~~D~Ivs~~~~~ 155 (391)
+ .. ..+||+|..++|..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCCHSS--SEEEE--S--
T ss_pred HHhhcCCCCCEEEECCCCC
Confidence 5 32 37999999998743
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.01 Score=51.33 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=72.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEechHHHHH-------HHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMSDH-------ARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~-~V~avD~s~~~~~-------a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
.....++.+|+|+=.|.|.++..++.. |++ .|++.-..+.... .+...++....| ++.+-.+...+..++
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq 121 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQ 121 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCC
Confidence 345678899999999999999998886 432 6877655422111 111122222223 677777777766668
Q ss_pred cccEEEEcccccccc----CcchHHHHHHHHhccccCCeEEEcccce
Q 016320 144 KVDVIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~----~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+.|++......+.++ +......+..++.+.|||||++++....
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 888887643222222 2334677788889999999998766543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0037 Score=57.32 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH-------HHHHHH--HcCCCCcEEEEEcccccCCC--CC
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH-------ARTLVK--ANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~-------a~~~~~--~~~~~~~v~~~~~d~~~~~~--~~ 143 (391)
...+++|||+|||+|+.++.+...|+..+...|.| ..++. +...+. .+....-..+++....+..+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35789999999999999999999987789999988 65521 111111 11111112333331112221 13
Q ss_pred --cccEEEEccccccccCcchHHHH-HHHHhccccCCeEEEcccc
Q 016320 144 --KVDVIISEWMGYFLLRESMFDSV-ICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 --~~D~Ivs~~~~~~l~~e~~~~~~-l~~~~~~LkpgG~~i~~~~ 185 (391)
.||+|.+.-..|... .+..+ ...+..+++++|+++...-
T Consensus 194 ~~~ydlIlsSetiy~~~---~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID---SLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccchhhhhhhhhhhCcc---hhhhhHhhhhhhcCCccchhhhhhH
Confidence 788887632233322 23333 4555678888887765433
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.033 Score=50.65 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHH-----cCCCCcEEEEEcccccCC----CCCc-ccE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA-----NNLQDVVEVIEGSVEDIV----LPEK-VDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~~~----~~~~-~D~ 147 (391)
+...||++|+|+|..++.+|......|.-.|..........+... +++...+.+...+..+.. .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998644478888887444433333322 333323444443332221 1133 899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeE
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
|++.- ....+.....++..+..+|..+++
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~ 194 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGT 194 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCe
Confidence 99832 222334455666777778888883
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=58.39 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=66.7
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcccccccc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~~~l~ 158 (391)
..|+|..+|.|.++..+.+... -|.-|=.... .-....+-..|+ |-+.+.=.+.++ .|..||+|-++.+.....
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~-~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~ 441 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSG-PNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLYK 441 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCC-CCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhhhhc
Confidence 6899999999999998887653 1222211100 011122333444 444443334443 458999999976544444
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 159 RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
..-.+..++-++.|.|+|+|.+|+.+....+
T Consensus 442 ~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 442 DRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred ccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 4455788899999999999999987655443
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.015 Score=56.24 Aligned_cols=94 Identities=28% Similarity=0.295 Sum_probs=60.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-cc----ccCCCCCcccEE
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SV----EDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~~~~~~~~D~I 148 (391)
.++.+|+-+|||+ |+++..+++. |+++|+++|.+ .-++.|++..... .+..... +. .++.-...+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEE
Confidence 3445999999997 9998887776 88999999999 7788887643211 0111111 11 111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+= ..+ ....+....++++|+|.++..
T Consensus 243 ie-~~G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IE-AVG--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EE-CCC--------CHHHHHHHHHHhcCCCEEEEE
Confidence 84 122 123566667889999998744
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.02 Score=53.51 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=50.3
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~Ivs~~ 152 (391)
+|+|+.||.|.++.-+.++|.+.|.++|++ .+++..+.+.. + .++.+|+.++.. ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 589999999999999999999889999999 66665555432 1 256778877643 35799999754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.057 Score=54.60 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----------CC--
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----------IV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~-- 140 (391)
.++.+|+-+|||. |+.++.+|+. |+ .|+++|.+ +.++.+++ .|. +++..+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcchh
Confidence 4688999999997 8888887776 88 79999999 66666554 332 211111100 00
Q ss_pred ---------CC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 ---------LP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---------~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ ..+|+||.-. ..........+.+...+.+||||.++..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 3699999732 1111111223346777889999998754
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0068 Score=59.51 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---CCcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~D~Iv 149 (391)
++.+|||.=|++|+-++..|+. |..+|+|-|.+ ..++..+++++.|+..+.++.-+.|+..+- . ...||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999999988886 67789999999 899999999999999888888888876642 2 27899998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.++.+. ...+|+...+.++.||++....-.
T Consensus 189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cCCCCC-------ccHHHHHHHHHhhcCCEEEEEecc
Confidence 766543 346788888889999988765433
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.07 Score=50.86 Aligned_cols=92 Identities=27% Similarity=0.283 Sum_probs=60.1
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-cccCC-CCCcccEEEE
Q 016320 76 HFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-VEDIV-LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~-~~~~~D~Ivs 150 (391)
..++++|+-+|+| .|.+++.+|++ |+ +|+++|.+ +-++.|++.-.. .++... ..... ..+.+|+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEE
Confidence 4578999999998 34677888884 86 89999999 778877775432 333322 11111 1245999986
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
-. . ...+....+.|+++|.++..-.
T Consensus 236 tv----~------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 236 TV----G------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred CC----C------hhhHHHHHHHHhcCCEEEEECC
Confidence 22 1 2234455677999999886543
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.073 Score=50.72 Aligned_cols=97 Identities=26% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~~~ 154 (391)
..+|||.=+|||+=++..+.. +..+|+.-|+| .+.+.+++|++.|...+ ..+++.|...+-.. ..||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 689999999999999888876 55489999999 99999999999994433 67777887665333 789999877654
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.- ..++++..+.++.+|++-+.
T Consensus 132 SP-------aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 SP-------APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC-------chHHHHHHHHhhcCCEEEEE
Confidence 32 34677777778889987654
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.055 Score=49.92 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=77.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCCC-CcEEEEEcccccC--CC-CCcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNLQ-DVVEVIEGSVEDI--VL-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~~--~~-~~~~D~Iv 149 (391)
..++||-||-|.|......+++ ....+.-+|+. ..++..++.... .++. .+|.+.-||-..+ .. .++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999888777776 33468899999 777877776544 2332 3588888886544 12 37999999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
.+.-......+. -...++..+.+.||++|+++...-.+|+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 865333332222 1356677788999999998866554443
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.4 Score=42.38 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCEEEEECCcccHHHHHHHH-c--CCCeEEEEech-HHHHHHHHHHHHcC-----------------------------
Q 016320 78 QGKTVLDVGTGSGILAIWSAQ-A--GARKVYAVEAT-KMSDHARTLVKANN----------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~-~--g~~~V~avD~s-~~~~~a~~~~~~~~----------------------------- 124 (391)
.+-++.|-.||+|.+.-.+.- + ..+.|+|-|++ ++++.|++|.....
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 346899999999986443332 2 23479999999 99999988874211
Q ss_pred ------------CCCcEEEEEcccccC------CCCCcccEEEEccc-cccccCcc-----hHHHHHHHHhccccCCeEE
Q 016320 125 ------------LQDVVEVIEGSVEDI------VLPEKVDVIISEWM-GYFLLRES-----MFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 125 ------------~~~~v~~~~~d~~~~------~~~~~~D~Ivs~~~-~~~l~~e~-----~~~~~l~~~~~~LkpgG~~ 180 (391)
-.....+.+.|+.+. ......|+|+.++. +....|++ ....++..+...|-+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 111256777777763 23345799999762 44444554 3678899999999555555
Q ss_pred Ec
Q 016320 181 YP 182 (391)
Q Consensus 181 i~ 182 (391)
.+
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.081 Score=47.34 Aligned_cols=99 Identities=26% Similarity=0.258 Sum_probs=61.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HH----HHHHHHHHHHcCCCCcEEEEEcccccCC----C
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KM----SDHARTLVKANNLQDVVEVIEGSVEDIV----L 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~ 141 (391)
.++..++.+||=||+++|.....++.. |. .-|||||.| .. +..|+++ .+|-.|..|++... +
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee
Confidence 455678999999999999876666665 32 259999998 32 2333321 22556666776642 1
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-.-+|+|+++... .+. ...+.-....+||+||.++++
T Consensus 224 VgmVDvIFaDvaq----pdq-~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQ----PDQ-ARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCC----chh-hhhhhhhhhhhhccCCeEEEE
Confidence 1467888886532 111 112222346789999998865
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.099 Score=47.78 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Iv 149 (391)
..+.|+.|+-+| -.-+.++.++--| +++|..||++ ..+....+.+++.|+++ ++.+.-|+++.-+. .+||+++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeee
Confidence 356788999999 4446666665544 6789999999 89999999999999976 89998899884222 7999999
Q ss_pred Eccc
Q 016320 150 SEWM 153 (391)
Q Consensus 150 s~~~ 153 (391)
.++.
T Consensus 227 TDPp 230 (354)
T COG1568 227 TDPP 230 (354)
T ss_pred cCch
Confidence 9774
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.063 Score=52.64 Aligned_cols=106 Identities=22% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-c----ccCCCCCcc
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-V----EDIVLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~----~~~~~~~~~ 145 (391)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. +. ..+.....+ . .++.....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3445778999999987 8888777776 76579999998 7777776542 11 112221111 1 111112469
Q ss_pred cEEEEccccc------------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGY------------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~------------~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+...-+. .+....+....+....+.|+++|.++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 9998622100 0111111234567777889999988754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.057 Score=48.04 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=53.6
Q ss_pred CCCEEEEECCcccHHHHH--HHHcCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC------CCcccE
Q 016320 78 QGKTVLDVGTGSGILAIW--SAQAGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~--~a~~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~------~~~~D~ 147 (391)
++.++||||.|.-.+--. .-..|. +.+|.|++ ..++.|+.++..| +++..|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999997543222 222366 69999999 8899999999998 787778776654332211 278999
Q ss_pred EEEccc
Q 016320 148 IISEWM 153 (391)
Q Consensus 148 Ivs~~~ 153 (391)
.+|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999873
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.17 Score=48.61 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~ 151 (391)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ +-++.|++ .|....+..-..++.++.. .+.+|+|+.-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 34688999999874 6677777776 77789999998 66665554 3432111111112222111 1358988852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+. ...+....++|+++|.++..
T Consensus 243 -~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 -SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 121 12344556788999998754
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.12 Score=45.22 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=61.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcC-------CCCcEEEEEcccccCCCC----Cc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANN-------LQDVVEVIEGSVEDIVLP----EK 144 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~-------~~~~v~~~~~d~~~~~~~----~~ 144 (391)
+.-.+.|||||-|.|.+.++-... .-+.|.|+- ...++.++++.... +. ++.++..+....... ++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchhhccchhhhcc
Confidence 345689999999999999888743 468999999 88888888877654 22 255655554332111 11
Q ss_pred cc-EEEEcccccccc----CcchHHHHHHHHhccccCCeEEE
Q 016320 145 VD-VIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D-~Ivs~~~~~~l~----~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
.+ ..++-+-.++.. +.-....++....-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 11 111111011110 00112456666777899999876
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.015 Score=56.04 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
|=-.|+..|+..+......|... . ..+|..|-|+-||.|.+++.+++.+. +|++-|.+ +++++.+.+++
T Consensus 223 Fk~DfskVYWnsRL~~Eherlsg-------~--fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEHERLSG-------L--FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIK 292 (495)
T ss_pred EEEecceEEeeccchhHHHHHhh-------c--cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhcc
Confidence 33446777766444444433322 1 35678899999999999999999985 89999999 99999999999
Q ss_pred HcCCCCc-EEEEEcccccC
Q 016320 122 ANNLQDV-VEVIEGSVEDI 139 (391)
Q Consensus 122 ~~~~~~~-v~~~~~d~~~~ 139 (391)
.|.+... |+++..|..++
T Consensus 293 lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccccchhheeeecccHHHH
Confidence 9998776 88888887664
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.089 Score=49.28 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-c-cccC------CCC-C
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-S-VEDI------VLP-E 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~~------~~~-~ 143 (391)
...+.+||-+|+|. |++++.+|++ |+++|+.+|.+ .-++.|++. |... +..... + ..++ ... .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~~-~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GATV-TDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCeE-EeeccccccHHHHHHHHHhhcccc
Confidence 35688999999997 9999999998 99999999999 888888873 3221 111111 1 1111 112 4
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+.+.-. . .+..++.....++++|.++..
T Consensus 242 ~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 242 QPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCCeEEEcc---C------chHHHHHHHHHhccCCEEEEe
Confidence 588887511 1 233455556678999996644
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.44 Score=44.38 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 140 (391)
+.+...+...++...+|.--|.|..+..+.+.. ..+++|+|.+ .+++.|++.....+ +++++++.++.++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 344455666778999999999999998888774 3579999999 99999999887765 56999999887763
Q ss_pred -CC-CcccEEEEcc
Q 016320 141 -LP-EKVDVIISEW 152 (391)
Q Consensus 141 -~~-~~~D~Ivs~~ 152 (391)
.. +++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 11 6889998764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.24 Score=46.39 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..+|..|||--||+|..++.+.+.|- +.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46889999999999999999998877 79999999 899999998754
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.63 Score=42.54 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH---c-C--CCeEEEEech----------------------
Q 016320 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ---A-G--ARKVYAVEAT---------------------- 110 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~---~-g--~~~V~avD~s---------------------- 110 (391)
...|...+..++...+...-...|+|+||-.|..+++++. . + .+++++.|.=
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 4667777888887776444446799999999977665433 1 2 3468887631
Q ss_pred -H----HHHHHHHHHHHcCC-CCcEEEEEcccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 111 -K----MSDHARTLVKANNL-QDVVEVIEGSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~----~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~--~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. ..+..++++...++ .++++++.|.+.+.-. + +++-++-.+. . ..+ .....|..++..|.|||++|
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lYe-sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LYE-STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---chH-HHHHHHHHHHhhcCCCeEEE
Confidence 0 12223333333443 4579999999876422 1 4444444322 1 112 24556888889999999999
Q ss_pred ccccee
Q 016320 182 PSHARM 187 (391)
Q Consensus 182 ~~~~~~ 187 (391)
+.....
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 987765
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.11 Score=49.27 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=49.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~Ivs~~ 152 (391)
+++|+-||.|.+++-+.++|...|.|+|++ .+.+.-+.+.. ....+|+.++.. ++.+|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 689999999999999999998889999999 66665555542 778889988753 23699999743
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.16 Score=47.93 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=56.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C-
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L- 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~- 141 (391)
+.+.+...++..++|.--|.|..+..+.+. +..+|+|+|.+ .+++.|+++.... .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 344444567789999999999999998876 44689999999 8888888766543 567999999988762 2
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
..++|-|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 26899999864
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.049 Score=45.75 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEcccc-cC-CCCCcccEEEE-ccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--MSDHARTLVKANNLQDVVEVIEGSVE-DI-VLPEKVDVIIS-EWM 153 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~--~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~~~~~~D~Ivs-~~~ 153 (391)
+++++-+|+..=-.-.++.++||++|+.||.++ .-+..+.++ ..+...|+. ++ ...++||.+.| ..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 578899999977777778888999999999873 111111111 112222221 11 22378998877 122
Q ss_pred cccc--------cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFL--------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l--------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.. ...+++.. +..++++|||||.+++.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEE
Confidence 1211 12234444 56678999999998754
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.42 Score=43.21 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..+|..|||--||+|..+..+.+.|- +.+|+|++ ...+.|.++++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35789999999999999999998877 69999999 888888888765
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.25 Score=44.10 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
..+|..|||--||+|..+.++.+.|- +.+|+|++ ...+.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46789999999999999999999877 79999999 88887764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.22 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s 110 (391)
+.....|||||.|+|.-.+.+.|. +=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345789999999999999999998 47888864
|
; GO: 0008168 methyltransferase activity |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.36 Score=44.94 Aligned_cols=95 Identities=24% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--cccccCCCCCcccEEEE
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~D~Ivs 150 (391)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.|++ .+....+.... ..+.++.....+|+++-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 34788999999875 6666666665 77669999988 55555544 33321111100 00111111246898874
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
- .+. ...+....+.|+++|.++..
T Consensus 194 ~-~G~--------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 F-SGA--------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred C-CCC--------hHHHHHHHHHhcCCCEEEEe
Confidence 1 111 22345556788999998744
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.41 Score=48.40 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=55.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--------------- 138 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------------- 138 (391)
.++.+||-+|+|. |..+..+++. |+ .|+++|.+ ..++.++. .+. +++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 3568999999997 7777776665 87 59999999 65554443 232 222222211
Q ss_pred --------CC-CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 139 --------IV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 --------~~-~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+. .-..+|+|++-.+ ........-+.++..+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 0156999987432 1112122234555677899999876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.3 Score=47.53 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCC--CCCcccE
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIV--LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~D~ 147 (391)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ +-++.+++ .|....+.....+.. .+. .++.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3445778899999874 6666666665 77679999988 66665543 343211111111111 110 1236899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+-- .+. ...+....+.|+++|.++..
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEEE
Confidence 8841 111 12344455678999998743
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.2 Score=41.05 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=79.2
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 016320 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVE 137 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~ 137 (391)
..|...+.+.+.+.+... ...|+.||||-=.-...+......+++=+|.-++++.-++.+.+.+. ..+..++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 345555666666655332 34699999997555554432211245555555677777777776543 345888988986
Q ss_pred c-C-------CC-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 138 D-I-------VL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 138 ~-~-------~~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+ + .+ +...-++++|.+.+++..+ ....++..+.....||+.++++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEecc
Confidence 2 1 01 1345688888876666544 5778888888877799888876433
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=42.46 Aligned_cols=114 Identities=18% Similarity=0.023 Sum_probs=69.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC---CC--eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAG---AR--KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------- 140 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g---~~--~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 140 (391)
+...++.+|||+.+-.|.=+..+.++. .. .|+|=|.+ .-+...+.......- ..+.+...|+..++
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 345688999999999998776666652 12 69998988 555555554433322 22444444433221
Q ss_pred --CC-CcccEEEEcccccc--ccCc------------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016320 141 --LP-EKVDVIISEWMGYF--LLRE------------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 141 --~~-~~~D~Ivs~~~~~~--l~~e------------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.. ..||-|+|+..... .... ...-.++..-.++||+||.++-+.+++.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 11 57999999653221 1100 0122456666799999999998877653
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.32 Score=47.06 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc----cCCCCCcccE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE----DIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+++|+++|.+ .-.+.+++ .|....+.....+.. +......+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 345788999999865 6666667776 77679999988 65555543 343211111111111 1111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+- ..+. ...+....+.|+++|+++..
T Consensus 249 vid-~~g~--------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VID-AVGR--------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEE-CCCC--------HHHHHHHHHHhccCCEEEEE
Confidence 884 2121 12244455688999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.19 Score=47.93 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=47.8
Q ss_pred EEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016320 82 VLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 82 VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+. ++ .++.+|+.++... ..+|+++.-+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999998778899999 6555555443 22 4456788887532 4689998743
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.62 Score=49.18 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEech----HHH-----------HHHHHHHHH-----cC
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEAT----KMS-----------DHARTLVKA-----NN 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-------g~------~~V~avD~s----~~~-----------~~a~~~~~~-----~~ 124 (391)
+.-+|||+|=|+|+..+.+.+. .. -+++++|.. +-+ ..+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999865554421 11 278999963 111 112222211 12
Q ss_pred C------CC--cEEEEEcccccCC--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 125 L------QD--VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ~------~~--~v~~~~~d~~~~~--~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+ .+ .++++.+|+++.- +...+|+++.+.+...-..+---..++..+.++++|||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 3567778887642 23579999988765433333234678999999999999887
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.58 Score=44.27 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+- ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid-~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYD-ASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEE-CCC
Confidence 567899999875 7777777775 88778888887 555544421 1 11 11110 1246898884 222
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ...++...++|+++|+++..
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEE
Confidence 1 12355566789999998744
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.78 Score=46.48 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
+.|.+.+...+..+|.|-.||+|.+...+++. + ...++|.|++ .....|+.+.--+++...+...++|...-+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 34444444445579999999999876665554 2 2469999999 899999999988887643566666654322
Q ss_pred -----CCCcccEEEEccc
Q 016320 141 -----LPEKVDVIISEWM 153 (391)
Q Consensus 141 -----~~~~~D~Ivs~~~ 153 (391)
..++||.|++++.
T Consensus 256 ~~~~~~~~~~D~viaNPP 273 (489)
T COG0286 256 HDDKDDKGKFDFVIANPP 273 (489)
T ss_pred ccccCCccceeEEEeCCC
Confidence 1267999999774
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.46 Score=45.44 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCCCCcccEE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~D~I 148 (391)
...++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 445688999998864 5566666665 77569999988 65555543 3432111111111 1111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+--. + . ...+....+.|+++|.++.
T Consensus 236 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 236 IECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 8421 1 1 1233444567899998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.69 Score=44.61 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEec---h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEA---T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
.++.+||-+|+|. |.++..++++ |+ +|++++. + +-.+.+ ++.|... +.....+..+......+|+|+-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhhhhhcCCCCEEEE
Confidence 4678999999875 7777777776 77 6999986 4 333333 3444321 1111111111111256898875
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-. + . ...+....+.|+++|.++..
T Consensus 245 ~~-g----~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 AT-G----V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred Cc-C----C----HHHHHHHHHHccCCcEEEEE
Confidence 21 1 1 12455566789999988743
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.79 Score=40.64 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=65.1
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016320 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 38 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
-+-...|.--+...-..++|.|..-++ .|.+......+.-|.+||.|.|.++..+..+|+.+...||++ ..+.-.
T Consensus 14 Re~i~lYRLqA~K~LSQNfLMD~~lT~----KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L 89 (326)
T KOG0821|consen 14 REIIKLYRLQAAKQLSQNFLMDLRLTD----KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL 89 (326)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHHHH----HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH
Confidence 333445544444444445566554333 344555556778899999999999999999998889999988 666655
Q ss_pred HHHHHHcCCCCcEEEEEcccccCC
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+...+... .+..+.++|+..+.
T Consensus 90 Q~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 90 QMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHhhcCC--cceEEeccccceeh
Confidence 55544433 34778888876653
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.1 Score=43.09 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
..++.+||-+|||. |.++..+++ .|+.+|+++|.+ +-++.|++ .+. ...+ .+ +.....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~-~~---~~~~~g~d~viD- 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI-DD---IPEDLAVDHAFE- 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh-hh---hhhccCCcEEEE-
Confidence 35688999999985 666666555 356689999998 66666653 111 1111 11 111124898884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+. . ..+..+....++|+++|+++..
T Consensus 229 ~~G~----~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGG----R-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCC----C-ccHHHHHHHHHhCcCCcEEEEE
Confidence 2221 0 1123455566789999998743
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.9 Score=42.62 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=53.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
.++++|+-+|+|. |.....+++. |+ +|+++|.+ .-+..|++ .|. +.+ +..+. -..+|+|+.-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~--v~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA--VKEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH--HcCCCEEEECC-
Confidence 5789999999997 7666655554 88 79999998 54444443 343 222 12221 14689998621
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+ ....+-....+.+++||+++...
T Consensus 266 G-------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 G-------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 1 11222233467899999887543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.9 Score=42.05 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
....++.+||-+|+|. |.++..+|+. |+++|+++|.+ +-++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3456788999999875 6666666665 77679999998 66666644
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.5 Score=40.32 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCEEEEECCcccHHHHHHHHc-C--------CCeEEEEech-HHHHHHHHHHHHc-----CCCCcEEEEEcccccCCCCC
Q 016320 79 GKTVLDVGTGSGILAIWSAQA-G--------ARKVYAVEAT-KMSDHARTLVKAN-----NLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g--------~~~V~avD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 143 (391)
..+|+|+|+|+|.++.-+.+. . ..+++.||.| .+.+..++.+... ....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 368999999999998887764 1 1379999999 7776666665442 233446663 3444442
Q ss_pred cccEEEE
Q 016320 144 KVDVIIS 150 (391)
Q Consensus 144 ~~D~Ivs 150 (391)
..-+|++
T Consensus 95 ~~~~iia 101 (252)
T PF02636_consen 95 FPGFIIA 101 (252)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 3456666
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.02 E-value=4.6 Score=35.90 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=60.8
Q ss_pred CCCCEEEEECCccc----HHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCCC-CcccE
Q 016320 77 FQGKTVLDVGTGSG----ILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVLP-EKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcG~G----~ls~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~-~~~D~ 147 (391)
..-+.++++.|+-| .+++.+|. + |. +++.|-.. ..+...++.+...++.+.++|+.++.. ++-.. ..+|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF 118 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDF 118 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCE
Confidence 34467888865533 33444333 3 44 68888887 666677777777788777899998843 33222 68999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++.+. - .++....+|+.+. +.|.|.++....
T Consensus 119 ~vVDc---~--~~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 119 VVVDC---K--REDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EEEeC---C--chhHHHHHHHHhc--cCCCceEEEEec
Confidence 98643 1 1222225666543 556676665433
|
The function of this family is unknown. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.36 Score=45.22 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEccccccccC--------------cchHHHHHHHHhccccCCeEEEcc
Q 016320 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLR--------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~~--------------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+++++|+.++ .++ +++|+|++++. |.... ...+..++..+.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57899998885 334 78999999873 32210 012356788999999999998865
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.75 Score=44.14 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=53.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~I 148 (391)
...++.+||-.|+|. |.++..+|++ |++.|++++.+ +..+.+++ .|....+.....+.. +......+|.+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 345678999999875 6666666665 77668999988 65555433 333211111111111 11112457734
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.|..+. ...+....++|+++|.++..
T Consensus 233 v~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3333221 22455556788999998754
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.2 Score=42.84 Aligned_cols=39 Identities=33% Similarity=0.597 Sum_probs=31.3
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016320 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..|.|+|.|.|.++.+++-. |. +|+|||-| ...+.|++.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 78999999999999888765 55 79999999 555555443
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.53 E-value=2 Score=37.28 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=61.6
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--------cCCC--------CcEEEEEcccccCCC
Q 016320 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--------NNLQ--------DVVEVIEGSVEDIVL 141 (391)
Q Consensus 81 ~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--------~~~~--------~~v~~~~~d~~~~~~ 141 (391)
+|.-||+|+ | .++..++.+|. +|+.+|.+ +.++.+++.++. ..+. .++++ ..|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467789987 4 46777788888 79999999 888777766554 1111 23443 3455544
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
...|+|+=.. .........++..+.+++.|+.+|.-...++-.
T Consensus 77 -~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 77 -VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp -CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred -hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 3689988422 222234678899999999999987766555444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.64 Score=44.55 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=50.5
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~Ivs~~ 152 (391)
.+++|+-||.|.+.+-+.++|..-+.++|++ ..++.-+.+... ..++..|+.++... . ++|+|+.-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5799999999999999999998889999999 555544444322 46677788776433 2 799999743
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.16 Score=39.86 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred cccEEEEcccc---ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 144 KVDVIISEWMG---YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 144 ~~D~Ivs~~~~---~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+||+|+|=.+. +.-.++.-+..+++.+..+|+|||.+|+....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 58999993221 11112334788999999999999999976443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.2 Score=41.72 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=48.7
Q ss_pred EEECCcccHHH-HH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCCCcccEEEEc
Q 016320 83 LDVGTGSGILA-IW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLPEKVDVIISE 151 (391)
Q Consensus 83 LDlGcG~G~ls-~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~~~~D~Ivs~ 151 (391)
+|||+|...+- +. +.+.+. ...|+|+. .....|..++.+|++...|.+++...... .....||.+.|+
T Consensus 107 iDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 79998875442 22 222344 68899999 67899999999999999888887643221 112459999998
Q ss_pred c
Q 016320 152 W 152 (391)
Q Consensus 152 ~ 152 (391)
+
T Consensus 186 P 186 (419)
T KOG2912|consen 186 P 186 (419)
T ss_pred C
Confidence 7
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.5 Score=41.04 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=64.1
Q ss_pred CCEEEEECCcc-cHHHHHHH-HcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 79 GKTVLDVGTGS-GILAIWSA-QAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcG~-G~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
..+|.-||.|. |..+..+| ..|+ .|+.+|.| +-++...... ..++..+-....++... .+.|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 45678888886 65554444 3467 79999999 7655554433 23477777777666544 78999998432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
......+.-+.+++.+.+|||.+++-
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEEE
Confidence 33444555667777888999998773
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.5 Score=39.79 Aligned_cols=93 Identities=28% Similarity=0.402 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEE
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~Ivs 150 (391)
.++.+||..|+|+ |.....+++. |. +|++++.+ ...+.+++ .+....+.....+... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 5788999999996 6666666665 64 79999988 65555543 2221111111111100 111357999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. + . ........+.|+++|.++..
T Consensus 208 ~~-~----~----~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 208 AV-G----G----PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CC-C----C----HHHHHHHHHhcccCCEEEEE
Confidence 32 1 1 02344455678899988743
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.4 Score=42.50 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH-------HHHcCC-CCcEEEEEcccccC
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL-------VKANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~-------~~~~~~-~~~v~~~~~d~~~~ 139 (391)
+.+.+...++..-.|+|.|.|.+..++|.. +.+.-+|+|+. ...+.|..+ .+..|- .+.++.+++++.+.
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 334455677889999999999987766554 66677888886 444444332 233343 34588999888764
Q ss_pred C----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 140 V----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
. +....++|+++.+ ...+. +..=+..+..-+++|.++|-
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fdp~-L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFDPE-LKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCCHH-HHHhhHHHHhhCCCcceEec
Confidence 3 2267899997543 22222 22223355566788888773
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.52 E-value=5.4 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=42.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC------CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG------ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g------~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
.++..++|+|||.|.|+.++++.- ...++.||-...-..+...+........++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 456789999999999999998863 23789999862111233333333211236777788888754
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.46 Score=42.98 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc-----C-----c---chHHHHHHHHhccccCCeEEEc
Q 016320 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL-----R-----E---SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~-----~-----e---~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++++++|..++ .++ +++|+|+.++. |... . . .-+...+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46788998775 455 89999999873 4321 0 0 1245678889999999998764
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.2 Score=42.27 Aligned_cols=94 Identities=28% Similarity=0.334 Sum_probs=55.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEEE
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~Iv 149 (391)
..++.+||..|+|. |..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+.. .......+|+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 45677888888763 7777777775 66 69999988 66665543 343211111110110 011225789888
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... + ....+....+.|+++|.++..
T Consensus 238 d~~-g--------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFV-G--------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECC-C--------CHHHHHHHHHHhhcCCEEEEE
Confidence 521 1 123455667889999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.3 Score=38.45 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999988775 4555667787 78888887 545444444433221224888999987752
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
..+++|++|.+.
T Consensus 90 ~~~~iD~li~nA 101 (313)
T PRK05854 90 EGRPIHLLINNA 101 (313)
T ss_pred hCCCccEEEECC
Confidence 125689999854
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.5 Score=36.79 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=70.6
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----AG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~----~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
++.....-.|++.|-+ .+...|+++|.-.|..+++.|. .| ..+|.++|++ .-++-+... ...|.
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~ 121 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDIL 121 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeE
Confidence 3444455555555543 4567899999988876666554 35 2379999999 544332221 13499
Q ss_pred EEEcccccCCC-------C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016320 131 VIEGSVEDIVL-------P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 131 ~~~~d~~~~~~-------~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~ 189 (391)
++.++..+... . +.--+.+| +......+. .-..++...++|.-|-+++..+..+--
T Consensus 122 f~egss~dpai~eqi~~~~~~y~kIfvi--lDsdHs~~h-vLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 122 FIEGSSTDPAIAEQIRRLKNEYPKIFVI--LDSDHSMEH-VLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCcEEEE--ecCCchHHH-HHHHHHHhhhHhhcCceEEEecccccC
Confidence 99999887632 1 12233333 122111222 223366677899999988876655443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.5 Score=42.29 Aligned_cols=74 Identities=26% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEE
Q 016320 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEATK----------------------MSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 132 (391)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+|+.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 367778888988999998751 123344455444333336666
Q ss_pred EcccccC---CCCCcccEEEE
Q 016320 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6555321 11267999987
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=3.3 Score=41.66 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
.-+++|+-||.|.+++-+-++|...|.++|++ .+.+.-+.+... ......+.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 35899999999999999998998888999999 544444433210 111345566776654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.97 E-value=3.9 Score=38.20 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------C
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------L 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 141 (391)
...|+.||-=|.|+|+ ++..+|+.|+ ++...|++ +......+.++++| ++....+|+.+.+ -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4568899999999985 6888899999 79999999 66666666666655 4888888887652 1
Q ss_pred C-CcccEEEEcc
Q 016320 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivs~~ 152 (391)
. +.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 2 6899999854
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.2 Score=42.77 Aligned_cols=95 Identities=26% Similarity=0.354 Sum_probs=54.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |..+..+|+. |+.+|++++.+ +..+.+++ .+....+.....+. ..+.....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 445678899888763 5666666665 77679999988 55555543 34321111111111 11111246899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+... + . ...+....+.|+++|+++.
T Consensus 239 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 239 VIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88511 1 1 1235556677899998873
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.7 Score=40.02 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=53.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccccc-CC--CCCccc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVED-IV--LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~~--~~~~~D 146 (391)
...++.+||-.|+|. |.+++.+|++ |+..|++++.+ +..+.|+ ..|....+.... .+... +. ..+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 346788999999875 6666666665 87679999987 6555553 344421111111 01111 10 123689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~ 182 (391)
+|+- ..+. ...+....++|+++ |.++.
T Consensus 266 ~vid-~~G~--------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFE-CVGD--------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEE-CCCC--------hHHHHHHHHhhccCCCEEEE
Confidence 8874 1121 12344455678898 98874
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.24 E-value=4.2 Score=38.63 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCC-CCcccEEE
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVL-PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~-~~~~D~Iv 149 (391)
.++.+||..|||. |..+..+++. |+.+|++++.+ +..+.+++ .+.. .++..+ ...+.. ...+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 3788899998875 5666666665 77579999988 65554443 2332 222211 112211 24589998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
... + . ...+....+.|+++|.++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 521 1 0 1234555678899999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.7 Score=39.65 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~~~ 154 (391)
..++....|+|+..|.++-.+.+.+- .|++||...|...... . ..|+-...|-..+.+ +.+.|-.||+.+.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d----t---g~v~h~r~DGfk~~P~r~~idWmVCDmVE 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD----T---GQVTHLREDGFKFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc----c---cceeeeeccCcccccCCCCCceEEeehhc
Confidence 35678899999999999999999987 7999998776543332 2 337888888877766 4889999997642
Q ss_pred ccccCcchHHHHHHHHhccccCC
Q 016320 155 YFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~Lkpg 177 (391)
....+-..+..+|..|
T Consensus 281 -------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 -------KPARVAALIAKWLVNG 296 (358)
T ss_pred -------CcHHHHHHHHHHHHcc
Confidence 1234444455666665
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.2 Score=37.71 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=26.9
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016320 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. |. .+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 44 5677888899899999865
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.93 E-value=2.1 Score=40.68 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=37.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHH
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~ 120 (391)
....++.+|.-+|||. |+-++.-|+. |+.+++|||++ .-++.|++.-
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG 230 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG 230 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC
Confidence 3455788999999986 7777776664 99999999999 7788777643
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.41 E-value=5 Score=31.83 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=44.6
Q ss_pred CEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEE
Q 016320 80 KTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs 150 (391)
.+|.++|-|.=. .+..++++|. .|+++|+++. ++. ..++++..|+.+.... +..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 479999998643 5677888897 6999999831 111 2288999999886654 78999998
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.13 E-value=2.2 Score=40.13 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..+|.+|.-+|+|. |+...+-+++ ||++++|||+| +-.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 45788999999987 6666666665 99999999999 777766654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=85.03 E-value=2 Score=41.35 Aligned_cols=74 Identities=31% Similarity=0.310 Sum_probs=45.6
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech----------------------HHHHHHHHHHHHcCCCCcEEEE
Q 016320 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT----------------------KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s----------------------~~~~~a~~~~~~~~~~~~v~~~ 132 (391)
....+||-+|||. | .++..++++|..+++.+|.+ .-++.|++.+++.+-.-.++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999994 4 35677888899899999974 1223334444433322235555
Q ss_pred EcccccC---CCCCcccEEEE
Q 016320 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 5554331 11267999987
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.01 E-value=5.8 Score=37.80 Aligned_cols=88 Identities=20% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS- 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs- 150 (391)
...++.+||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.|++ .|... ++. ..+. ..+.+|+++-
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEEC
Confidence 456788999999864 5555666665 77 69999988 55555544 44332 111 1111 1245786653
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.. ...+....+.|+++|.++..
T Consensus 231 ~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 231 APA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 111 12355556789999998753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.7 Score=42.11 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---c----ccCCCCCcc
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---V----EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~----~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.++..+|++ |+.+|++++.+ ...+.+++ .+.. .++..+ . .... ...+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~~ 255 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCCC
Confidence 45678899888764 6666666665 88779999988 55554443 2321 222211 1 1112 3568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+|+... + .. ..+....+.|+++|.++.
T Consensus 256 d~vld~~-g----~~----~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 256 DYALDTT-G----VP----AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred cEEEECC-C----Cc----HHHHHHHHHhccCCEEEE
Confidence 9988521 1 11 234555677899998874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.85 E-value=15 Score=33.48 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=63.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHH-HHHHHHHc-CCCCcEEEEEcccccC--CCCCcccE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDH-ARTLVKAN-NLQDVVEVIEGSVEDI--VLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~-a~~~~~~~-~~~~~v~~~~~d~~~~--~~~~~~D~ 147 (391)
.+...+|+|+|+..=+..+.++ | ..+.+.||+| .+++. |++..... +++ |.-+++|.+.. .+|+.---
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAELPRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcccCCCeE
Confidence 4688999999998766555544 3 3479999999 76654 55554443 333 66677776542 22322222
Q ss_pred EEE---ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IIS---EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs---~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++ ..++.+... ....++..+...|+||-.+++-
T Consensus 156 l~~flGStlGN~tp~--e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPG--ECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChH--HHHHHHHHHHhcCCCcceEEEe
Confidence 222 233433332 3567899999999999988755
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.7 Score=37.72 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=61.2
Q ss_pred HhHHHHHHHHHhcCCCCCC-CEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccc
Q 016320 61 VRMDAYFNSIFQNKHHFQG-KTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSV 136 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~-~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 136 (391)
.|...+.+.+.+.+...++ ..|+.||||-=.....+... +..+++=+|..++++.-++.+...+.. ...+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 3444444555555433344 48999999987777777764 233566666667777777776665321 2245788888
Q ss_pred ccCC---------C-CCcccEEEEccccccccCcchHHHHHHH
Q 016320 137 EDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICA 169 (391)
Q Consensus 137 ~~~~---------~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~ 169 (391)
.+.. + +...-++++|.+...+..+ ....+++.
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHH
Confidence 7631 1 2556788888866665544 34445543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=84.18 E-value=2.1 Score=42.04 Aligned_cols=101 Identities=23% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc----ccCCCCCc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----EDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~~~~~~~ 144 (391)
...++.+||-.|+|. |.++..+|++ |++.|+++|.+ +-++.|++ .|.. .+... +. .++.....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCC
Confidence 345678888888875 6666666665 88767777887 55555554 3431 12211 11 11111246
Q ss_pred ccEEEEccccccc------cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+++-- .+.-. .........++...++++++|.++..
T Consensus 255 ~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 8988852 22110 00011123566666789999998753
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.2 Score=37.48 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=45.4
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEec-------------------h-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEA-------------------T-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~-------------------s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
....+|+-+|||. | ..+..+++.|..+++.+|. . .-++.+.+.+++.+..-+|+.+..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 3457899999994 4 3567788889988888853 2 234445555554433223566555
Q ss_pred ccccCC---CCCcccEEEE
Q 016320 135 SVEDIV---LPEKVDVIIS 150 (391)
Q Consensus 135 d~~~~~---~~~~~D~Ivs 150 (391)
.+..-. +-..+|+||+
T Consensus 99 ~i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 99 RLDAENAEELIAGYDLVLD 117 (228)
T ss_pred eeCHHHHHHHHhCCCEEEE
Confidence 542211 1156999997
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=4.4 Score=36.16 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-------------------HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-------------------KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 78 ~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
+..+|+-+|||. | .++..+++.|..+++.+|.+ .-++.+.+++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 557899999995 4 46777888899889988875 12333444444433232355554444
Q ss_pred ccCC---CCCcccEEEE
Q 016320 137 EDIV---LPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~---~~~~~D~Ivs 150 (391)
.... +-..+|+||.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 3311 1157999985
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=7.7 Score=37.90 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=62.4
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEccccccccC
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~ 159 (391)
.||-++-.-|-++..++..+...+ .|.--.-...+++++.|++... ++++. ..+ ++++.+|+|+.-+ .-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~-~~~~~~d~vl~~~----PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLD--STA-DYPQQPGVVLIKV----PKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeec--ccc-cccCCCCEEEEEe----CCC
Confidence 689999999999999996654211 2322233456778899988643 44442 222 3457799998633 222
Q ss_pred cchHHHHHHHHhccccCCeEEE
Q 016320 160 ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 160 e~~~~~~l~~~~~~LkpgG~~i 181 (391)
...+...+..+.+.|.||+.+|
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEE
Confidence 2456777888899999999976
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=83.37 E-value=6.4 Score=35.97 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=55.2
Q ss_pred hHhHHHHHHHHHh-cCCCCCCCEEEEECCcc--cH--HHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEE
Q 016320 60 RVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGS--GI--LAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 60 ~~r~~~~~~~i~~-~~~~~~~~~VLDlGcG~--G~--ls~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~~ 132 (391)
-..+....+.|.. .+....+.+||.+|+|+ |. -+..+.+--+. .++-.|+.+.+ . +.-..+
T Consensus 42 V~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------S-----Da~~~~ 109 (299)
T PF06460_consen 42 VAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------S-----DADQSI 109 (299)
T ss_dssp HHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEE
T ss_pred HHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------c-----ccCCce
Confidence 4445555566644 23334568999999986 32 23334443222 45555554321 1 223567
Q ss_pred EcccccCCCCCcccEEEEcccc--------ccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 133 EGSVEDIVLPEKVDVIISEWMG--------YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 133 ~~d~~~~~~~~~~D~Ivs~~~~--------~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+|.+.+.++.++|+|+|+.-. .....+.-...+..-++.-|+-||.+.+
T Consensus 110 ~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 110 VGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp ES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred eccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 7899998888999999998641 1122233355566666778899998764
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.80 E-value=2.7 Score=41.01 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHH
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~ 115 (391)
.++.+|+-+|+|. |..+...++ .|+ +|+++|.+ +-++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQ 205 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 3557799999984 665555444 487 69999998 54433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=82.46 E-value=4.8 Score=35.48 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=44.8
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--HH------------------HHHHHHHHHHcCCCCcEEEEEcc
Q 016320 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--KM------------------SDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s--~~------------------~~~a~~~~~~~~~~~~v~~~~~d 135 (391)
.+.+||-+|||. | ..+..++..|.++++.+|.. +. ++.+++.+++.+..-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999985 3 34566777899999999854 11 23344444444333235555544
Q ss_pred cccCC--CCCcccEEEEc
Q 016320 136 VEDIV--LPEKVDVIISE 151 (391)
Q Consensus 136 ~~~~~--~~~~~D~Ivs~ 151 (391)
+.+.. +-..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 43321 11689999973
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.45 E-value=0.31 Score=39.41 Aligned_cols=82 Identities=28% Similarity=0.338 Sum_probs=50.7
Q ss_pred cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCcccEEEEcccccccc
Q 016320 88 GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 88 G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~~D~Ivs~~~~~~l~ 158 (391)
|.|.++..+|++ | .+|+++|.+ .-++.+++ .|.. .++..+-.+ +.....+|+|+--. +
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-G---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESS-S----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEec-C----
Confidence 468888888887 7 589999999 66555543 4422 333322221 11124799998411 1
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016320 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
-...++....+|+++|.++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESST
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEcc
Confidence 134566677889999998865443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=82.42 E-value=5.4 Score=32.34 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~-ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 142 (391)
+.+.|.+. ....+|+++|-|.=. .+..++++|. .|+++|+++. .+. .| +.++..|+.+..+.
T Consensus 4 ~a~~ia~~---~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARL---NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHH---S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHH
T ss_pred HHHHHHHh---CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHh
Confidence 44555543 234599999999743 5777888897 7999999932 122 22 78888998886544
Q ss_pred CcccEEEE
Q 016320 143 EKVDVIIS 150 (391)
Q Consensus 143 ~~~D~Ivs 150 (391)
+..|+|.|
T Consensus 69 ~~a~lIYS 76 (127)
T PF03686_consen 69 EGADLIYS 76 (127)
T ss_dssp TTEEEEEE
T ss_pred cCCcEEEE
Confidence 78999998
|
; PDB: 2K4M_A. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=82.35 E-value=7.4 Score=33.30 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=57.7
Q ss_pred EECCcccHHHHHHHHc-C-CCeEEEEech---HHHHH---HHHHHHHcCCCCcEEEE-EcccccCC--C---CCcccEEE
Q 016320 84 DVGTGSGILAIWSAQA-G-ARKVYAVEAT---KMSDH---ARTLVKANNLQDVVEVI-EGSVEDIV--L---PEKVDVII 149 (391)
Q Consensus 84 DlGcG~G~ls~~~a~~-g-~~~V~avD~s---~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~--~---~~~~D~Iv 149 (391)
-||-|.=.++..+++. + ...++|.-.. +..+. +..+++...-.+ ++++ ..|+..+. . ..+||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEE
Confidence 3566666677777776 4 5567776554 22221 234443331112 3333 34666653 1 27899999
Q ss_pred Eccccccc----------cCcchHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFL----------LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l----------~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
-+...... .+...+..++..+.++|+++|.+.+..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 76532220 112346778888999999999887653
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.30 E-value=5.1 Score=38.48 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcC---------CCeEEEEech-HHHHHHHHHHHH
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG---------ARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g---------~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
....+++||.|+|.++..+.+.. +.++..||+| +....-+++.+.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44689999999999977665531 4589999999 666555555543
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=82.20 E-value=9.2 Score=36.77 Aligned_cols=94 Identities=26% Similarity=0.329 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCCccc
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~D 146 (391)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ +....++ ..+....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3778888888753 5555555655 77679999877 5444333 34442211111111 11111125689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+... +. ...+....+.|+++|.++..
T Consensus 252 ~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEAS-GH--------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEECC-CC--------hHHHHHHHHHhccCCEEEEE
Confidence 998521 11 12344555788999988743
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.91 E-value=3.4 Score=39.65 Aligned_cols=97 Identities=25% Similarity=0.283 Sum_probs=53.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCccc
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D 146 (391)
....++.+||-.|+|. |.++..+++. |+.+|++++.+ +..+.+++ .+....+.....+. .+......+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 3445678898888753 4555555555 77679999887 65555543 24321111111111 1111113599
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++-.. +. ...+....+.|+++|.++..
T Consensus 244 ~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 244 VSFDCA-GV--------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEEECC-CC--------HHHHHHHHHhccCCCEEEEE
Confidence 998521 10 12345556778999987743
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.89 E-value=9.1 Score=35.84 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=55.7
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN----------NL---------QDVVEVIEGSVE 137 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 137 (391)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899995 4 46677777887 79999999 7777665543321 11 0112221 1221
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
. -...|+|+-.. .........++..+.+.++++.+++
T Consensus 82 ~---~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 15689888532 1121235677777888888887665
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.59 E-value=7 Score=36.55 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=56.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cC-CC--------CcEEEEEcccccCC
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NN-LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~~ 140 (391)
++|.-||+|. | .++..++++|. +|+.+|.+ +.++.+.+.+.. .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3588899985 3 45666777787 69999999 777766543221 11 00 012222 222211
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
-...|+|+.-.. ........++..+.+.++++.++.....+
T Consensus 79 -~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 156899985321 11122345667777788888766554444
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=81.38 E-value=20 Score=34.49 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=53.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------C--C-------CeEEEEech--HHHHHHHHHHHH----cCCCC-cEEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA--------G--A-------RKVYAVEAT--KMSDHARTLVKA----NNLQD-VVEVIE 133 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--------g--~-------~~V~avD~s--~~~~~a~~~~~~----~~~~~-~v~~~~ 133 (391)
+.-+|+|+||.+|..++.+... . . -+|+--|.- +.-...+..-.. ....+ -+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3368999999999887766432 0 0 157777753 332222211111 00111 033444
Q ss_pred cccccCCCC-CcccEEEEc----cccccc---cC-----------------------------cchHHHHHHHHhccccC
Q 016320 134 GSVEDIVLP-EKVDVIISE----WMGYFL---LR-----------------------------ESMFDSVICARDRWLKP 176 (391)
Q Consensus 134 ~d~~~~~~~-~~~D~Ivs~----~~~~~l---~~-----------------------------e~~~~~~l~~~~~~Lkp 176 (391)
+.+..--+| ++.|+++|- |+.... .. ..++..+|+.+.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 555543344 899999982 222110 00 12456778888889999
Q ss_pred CeEEEcc
Q 016320 177 TGVMYPS 183 (391)
Q Consensus 177 gG~~i~~ 183 (391)
||++++.
T Consensus 176 GG~mvl~ 182 (334)
T PF03492_consen 176 GGRMVLT 182 (334)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 9999865
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.34 E-value=9.9 Score=36.74 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEEc
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~D~Ivs~ 151 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.... .+++.|.. .++. .+...+. ..+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~---~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDE---AINRLGAD---SFLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhh---HHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEE-
Confidence 4678898899875 6777777776 77 68888877 42221 12233432 1221 1111110 1135898884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+ . ...+....+.|+++|.++..
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEe
Confidence 222 1 12344556789999998743
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=81.29 E-value=12 Score=33.07 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=26.7
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016320 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s 110 (391)
.+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3557899999995 4 36777888898889888865
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.22 E-value=15 Score=30.44 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
+.+++.+.....++++|+-+|||. | .++..+++.|...|+.+|.+ +..+...+...... +.....+..+. .
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~ 79 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--L 79 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--c
Confidence 445555543335678999999973 2 23333444554579999988 54433332222111 11122233222 2
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+.+|+|++..
T Consensus 80 ~~~Dvvi~~~ 89 (155)
T cd01065 80 AEADLIINTT 89 (155)
T ss_pred ccCCEEEeCc
Confidence 6799999843
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=81.11 E-value=3.3 Score=39.48 Aligned_cols=94 Identities=23% Similarity=0.422 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~~~~~~D~I 148 (391)
..++.+||..|+|. |..++.+|++ |..+|++++.+ ...+.+++ .+....+.....+. ......+.+|++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 44678888887753 5566666665 65578898777 55554443 23211111111111 111112569998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+.. .+. ...+....+.|+++|.++.
T Consensus 241 ld~-~g~--------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 241 IEA-VGF--------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEc-cCC--------HHHHHHHHHHhhcCCEEEE
Confidence 852 111 1245555678899998873
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.65 E-value=7.6 Score=36.36 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=59.0
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCCC---------CcEEEEEcccccCC
Q 016320 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNLQ---------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~~---------~~v~~~~~d~~~~~ 140 (391)
.+|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+++.+.+ .+.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 346777788888 79999999 877776655332 1110 11222 2333222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcccc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPSHA 185 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~L-kpgG~~i~~~~ 185 (391)
...|+|+-.. .........++..+.+.+ +|+.++.-...
T Consensus 83 --~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 --ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred --CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5789988522 223334556777788888 77776654433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=80.56 E-value=6.5 Score=34.26 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHH------------HHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHART------------LVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+|--+|.|- |+ ++..+|+.|. +|+|+|++ +.++..++ .+++..-..+..+. .|.... ....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--IKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--HHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--hhcc
Confidence 466778885 53 5677888887 79999999 65544321 11111001122222 222221 1457
Q ss_pred cEEEE-ccccccccCc---chHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIIS-EWMGYFLLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs-~~~~~~l~~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+++. -+........ ..+..+++.+.+.|+++..++..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 77654 2222222222 23667788888889997766654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.13 E-value=12 Score=35.90 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=50.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+. .+.++..|+.+.. .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 467899999987664 4555677788 69999988 666655555555443 3777888886531 1
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
.+++|++|.+.
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 15789998854
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.02 E-value=10 Score=34.40 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++..|+.+..-
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999987664 4555667788 69999988 6555555544442223347888888876420
Q ss_pred CCcccEEEEc
Q 016320 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivs~ 151 (391)
-+.+|++|.+
T Consensus 84 ~g~id~li~~ 93 (260)
T PRK07063 84 FGPLDVLVNN 93 (260)
T ss_pred hCCCcEEEEC
Confidence 1468998874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.01 E-value=5.1 Score=39.18 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=46.3
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEEEEcc
Q 016320 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~Ivs~~ 152 (391)
.+||-||||. |. .+..+|+.+..+|+..|.+ +.++.+..... .+++.++.|+.+.+ +-..+|+||+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4689999975 44 3455677776689999999 65544443321 14889998988763 225679999744
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 391 | ||||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 1e-163 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 2e-50 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 2e-50 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 4e-50 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 4e-50 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 7e-50 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 1e-47 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 9e-47 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 5e-46 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 5e-46 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 5e-46 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 7e-46 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 7e-46 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 3e-40 | ||
| 3g5l_A | 253 | Crystal Structure Of Putative S-Adenosylmethionine | 2e-05 |
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine Dependent Methyltransferase From Listeria Monocytogenes Length = 253 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.63 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.63 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.62 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.59 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.58 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.57 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.57 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.57 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.56 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.55 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.55 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.55 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.54 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.54 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.54 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.54 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.53 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.53 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.53 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.53 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.53 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.52 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.52 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.51 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.51 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.51 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.5 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.49 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.48 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.48 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.46 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.46 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.46 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.45 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.45 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.45 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.45 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.45 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.44 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.44 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.44 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.44 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.44 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.44 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.44 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.43 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.43 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.43 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.43 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.43 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.43 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.43 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.42 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.42 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.42 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.42 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.42 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.42 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.41 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.41 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.41 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.4 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.4 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.39 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.39 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.39 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.39 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.39 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.38 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.38 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.37 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.37 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.37 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.37 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.37 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.36 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.36 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.36 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.36 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.36 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.35 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.34 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.34 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.34 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.34 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.33 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.33 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.32 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.32 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.32 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.32 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.3 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.3 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.3 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.29 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.29 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.28 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.28 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.28 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.28 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.27 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.27 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.27 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.26 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.26 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.26 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.26 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.26 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.26 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.25 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.25 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.25 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.25 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.25 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.25 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.25 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.24 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.23 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.23 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.23 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.23 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.22 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.22 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.2 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.2 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.2 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.2 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.2 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.2 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.19 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.19 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.19 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.19 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.18 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.18 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.17 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.16 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.16 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.16 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.15 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.14 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.13 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.12 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.12 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.11 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.1 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.1 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.1 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.1 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.09 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.04 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.04 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.02 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.0 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.99 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.99 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.97 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.97 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.96 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.96 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.95 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.94 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.93 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.92 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.92 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.9 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.82 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.82 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.81 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.81 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.8 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.77 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.77 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.74 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.74 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.69 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.64 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.64 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.49 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.45 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.37 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.37 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.35 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.32 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.29 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.2 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.17 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.17 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.17 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.15 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.07 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.01 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.01 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.94 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.93 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.7 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.69 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.4 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.25 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.16 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.1 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.05 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.75 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.65 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.5 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.45 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.43 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.19 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.02 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.86 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.39 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.23 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.2 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.08 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.02 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.98 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.9 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.83 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.7 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.69 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.68 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.67 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.51 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.49 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.46 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.23 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.09 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.9 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 93.83 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.82 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.74 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.72 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.68 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.59 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.33 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.22 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.1 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.95 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.88 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.87 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.82 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.82 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.79 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.7 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.48 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.3 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.11 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.05 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.86 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.79 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.65 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.63 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.48 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.08 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.02 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.94 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.92 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.85 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.78 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.73 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 90.59 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.59 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.55 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.5 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.33 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.1 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 90.09 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.89 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.82 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.61 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.28 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.2 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 88.72 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 88.59 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.5 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.44 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 88.38 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.16 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 88.01 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.86 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 87.82 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 87.73 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 87.71 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 86.96 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.96 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 86.9 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 86.73 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.69 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 86.6 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 86.52 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 86.3 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.88 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 85.74 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.6 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 85.51 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 85.37 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.35 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 84.9 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.88 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 84.86 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 84.62 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.61 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.48 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.38 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 84.25 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 83.85 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 83.75 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 83.59 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.57 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 83.51 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 82.97 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 82.94 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 82.9 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 82.9 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 82.87 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 82.68 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 82.63 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 82.55 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 82.52 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 82.52 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 82.51 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 82.4 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 82.38 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 82.34 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 82.24 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 82.22 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 82.09 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 81.79 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 81.47 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 81.45 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 81.44 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.35 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 81.17 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 81.13 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 80.91 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 80.81 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 80.67 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.58 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.54 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 80.51 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 80.43 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 80.21 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 80.03 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-63 Score=474.59 Aligned_cols=326 Identities=37% Similarity=0.598 Sum_probs=278.1
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHH
Q 016320 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDH 115 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~ 115 (391)
...++..||++|+++..|..||+|..|+.+|+++|.++...+++++|||||||+|+|++++|++|+++|+|||.|+|++.
T Consensus 41 ~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~ 120 (376)
T 4hc4_A 41 KRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ 120 (376)
T ss_dssp --------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH
T ss_pred cccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHH
Confidence 34566789999999999999999999999999999987767889999999999999999999999999999999988999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~ 195 (391)
|+++++.|++.++|++++++++++.+|+++|+||||++++++.+|.+++.++.++.++|+|||.++|..+++|++|+++.
T Consensus 121 a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~ 200 (376)
T 4hc4_A 121 AREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQ 200 (376)
T ss_dssp HHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016320 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
. ....+.+|... ...|||||+++....... .....++.++.+.+.+++++|+.+++|||.++..++.
T Consensus 201 ~-------l~~~i~~w~~v----~~~yGfd~s~~~~~~~~~--~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~ 267 (376)
T 4hc4_A 201 M-------LEWRLGFWSQV----KQHYGVDMSCLEGFATRC--LMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQE 267 (376)
T ss_dssp H-------HHHHHHGGGGH----HHHHSCCCGGGHHHHHHH--HHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHH
T ss_pred h-------hhhhhcchhcc----ccccCcCchhhhhhhhhh--hcccCceEEEeecccccccCCEEEEEEECCCCCcccc
Confidence 2 22345667532 345999999984322111 1111357788888899999999999999999876532
Q ss_pred c--ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEE
Q 016320 276 R--EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSF 353 (391)
Q Consensus 276 ~--~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~ 353 (391)
. .+...|++++. ++|++|||++||++.|++.. ...++.|||+| ..+.|||+|++|+|++|+.|++||+|++++
T Consensus 268 ~~~~~~~~f~~~~~-~~g~vhg~~~WFd~~f~~~~---~~~~v~lST~P-~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i 342 (376)
T 4hc4_A 268 LEAGVGGRFRCSCY-GSAPMHGFAIWFQVTFPGGE---SEKPLVLSTSP-FHPATHWKQALLYLNEPVQVEQDTDVSGEI 342 (376)
T ss_dssp HHHCEEEEEEEECC-SSEEEEEEEEEEEEEECCCC-----CCEEEECCT-TSCCCTTCEEEEEEEEEEEECTTCEEEEEE
T ss_pred ccccceeEEEEEec-CCcEEEEEEEEEEEEecCCC---CCCceEEeCCC-CcCCCceeeEEEEeCCceEeCCCCEEEEEE
Confidence 1 45677888888 99999999999999996531 14569999999 588999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEEEEEEEeccccc
Q 016320 354 SMTRSKENHRLLEVEFSCEIRESTGQ 379 (391)
Q Consensus 354 ~~~~~~~~~r~~~~~~~~~~~~~~~~ 379 (391)
.+.++.+|+|.|+|+++|++.++.++
T Consensus 343 ~~~~~~~n~R~~~i~i~~~~~~~~~~ 368 (376)
T 4hc4_A 343 TLLPSRDNPRRLRVLLRYKVGDQEEK 368 (376)
T ss_dssp EEEECSSCTTSEEEEEEEEETTSCCE
T ss_pred EEEECCCCCceeEEEEEEEeCCCCcc
Confidence 99999999999999999999887754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=457.13 Aligned_cols=358 Identities=72% Similarity=1.221 Sum_probs=310.6
Q ss_pred cccccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHH
Q 016320 33 TVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKM 112 (391)
Q Consensus 33 ~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~ 112 (391)
+.....+...||+.|+..|.+..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+++|+|+|+|.|
T Consensus 18 ~v~~~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~ 97 (376)
T 3r0q_C 18 PVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKM 97 (376)
T ss_dssp ----------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTT
T ss_pred CccccccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHH
Confidence 33455666889999999999999999999999999999988878889999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeec
Q 016320 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 192 (391)
++.|+++++.+++.++|+++++|++++.++++||+|+|+++.+++..+.++..++.++.++|||||.+++...+.+..|+
T Consensus 98 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~ 177 (376)
T 3r0q_C 98 ADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPI 177 (376)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEee
Confidence 99999999999999999999999999988899999999999999988888999999999999999999999999999998
Q ss_pred ccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCc
Q 016320 193 RSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV 272 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~ 272 (391)
...........+...+..|..+..+..+.+|+|++.+.+.+..+...+++.+|.++.+++.+++++|+.+.++||.++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~ 257 (376)
T 3r0q_C 178 KSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASV 257 (376)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCG
T ss_pred cchHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCH
Confidence 76533222223445566787776666789999999997655444444456789999999999999999999999999999
Q ss_pred ccccceeeEEEEEE-EecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEE
Q 016320 273 DDIREVRSKFLSSI-RGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 351 (391)
Q Consensus 273 ~~~~~~~~~~~~~~-~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~ 351 (391)
++++.+...|++++ . ++|.+|||++|||++|+++...|.++++.|||+|...+.|||+|++|+|++|+.|++|++|++
T Consensus 258 ~~l~~~~~~~~~~~~~-~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~ 336 (376)
T 3r0q_C 258 SEIEEVRSNVTSVINM-EHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNL 336 (376)
T ss_dssp GGTSEEEEEEEEBCSC-SCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred HHhcccccceEEEEec-cCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEE
Confidence 88855888999998 7 999999999999999975422233457999999953568999999999999999999999999
Q ss_pred EEEEEeCCCCCeeeEEEEEEEEeccccccCCcccceeeeC
Q 016320 352 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391 (391)
Q Consensus 352 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
++.+.++.+|+|.|+|+++|.+++++|+..|++.+.|+||
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T 3r0q_C 337 GLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFIE 376 (376)
T ss_dssp EEEEEECSSCTTSEEEEEEEEEECSSSCCCCCEEEEEEEC
T ss_pred EEEEEECCCCCeeEEEEEEEEecCcCCCCCCCcceeEeeC
Confidence 9999999999999999999999999999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=401.04 Aligned_cols=323 Identities=35% Similarity=0.640 Sum_probs=278.8
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHH
Q 016320 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDH 115 (391)
Q Consensus 36 ~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~ 115 (391)
.......||+.|+....+..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+.+|+|+|+|+|++.
T Consensus 24 ~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~ 103 (349)
T 3q7e_A 24 DMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 103 (349)
T ss_dssp -------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHH
T ss_pred ccchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHH
Confidence 34455779999999999999999999999999999876656788999999999999999999998889999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeeccc
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 194 (391)
|+++++.+++.++|+++++|+++++++ ++||+|+|+++++.+..+.++..++.++.++|||||+++|...+.+..++..
T Consensus 104 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 183 (349)
T 3q7e_A 104 AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED 183 (349)
T ss_dssp HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecC
Confidence 999999999999999999999999877 8999999999999888888999999999999999999999999999999865
Q ss_pred CcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccc
Q 016320 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDD 274 (391)
Q Consensus 195 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~ 274 (391)
.. .....+.+|. +++|+|++.+ +.....+|.++.+.+..++++|+.+.++||.+...++
T Consensus 184 ~~------~~~~~~~~w~-------~~~G~d~~~~--------~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~ 242 (349)
T 3q7e_A 184 RQ------YKDYKIHWWE-------NVYGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVED 242 (349)
T ss_dssp HH------HHHHHTGGGG-------CBTTBCCGGG--------HHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGG
T ss_pred hh------hhhhhhcccc-------cccCcchHHH--------hHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhh
Confidence 31 1233566784 8899999988 3445567899999999999999999999999999888
Q ss_pred ccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEE
Q 016320 275 IREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~ 354 (391)
+ .+...|+++++ ++|.+|||++|||+.|+++ ..++.|||+|. .+.|||+|++|+|++|+.|++|++|++++.
T Consensus 243 l-~~~~~~~~~~~-~~~~~~g~~~~Fd~~~~~~-----~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~ 314 (349)
T 3q7e_A 243 L-TFTSPFCLQVK-RNDYVHALVAYFNIEFTRC-----HKRTGFSTSPE-SPYTHWKQTVFYMEDYLTVKTGEEIFGTIG 314 (349)
T ss_dssp G-SEEEEEEEEBC-SSEEEEEEEEEEEEECTTS-----SSCCEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEE
T ss_pred c-ceeeeEEEEEc-cCCEEEEEEEEEEEEecCC-----CCccEEECCCC-cCCCcceeEEEEECCceEeCCCCEEEEEEE
Confidence 8 78889999999 9999999999999999764 45799999994 789999999999999999999999999999
Q ss_pred EEeCCCCCeeeEEEEEEEEeccccccCCcccceee
Q 016320 355 MTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389 (391)
Q Consensus 355 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (391)
+.++.+|+|.++|+++|.++++.++. ...+.|+
T Consensus 315 ~~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~ 347 (349)
T 3q7e_A 315 MRPNAKNNRDLDFTIDLDFKGQLCEL--SCSTDYR 347 (349)
T ss_dssp EEECSSCSSCEEEEEEEEEECSSCEE--EEEEEEE
T ss_pred EEECCCCCeeEEEEEEEEeCCccccc--ccCceEe
Confidence 99999999999999999999988775 3445554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=388.54 Aligned_cols=308 Identities=33% Similarity=0.603 Sum_probs=274.2
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016320 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.||++|++...|..|++|..|+..|.++|.+.+...++++|||||||+|.+++.++++|+.+|+|+|+++|++.|+++++
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 48999999999999999999999999999877666788999999999999999999998889999999988999999999
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
.+++.++|+++++|+.++.++ ++||+|+|+++++.+.++..+..++.++.++|+|||.++|...++++.++.+..
T Consensus 82 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~---- 157 (328)
T 1g6q_1 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ---- 157 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH----
T ss_pred HcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCch----
Confidence 999988899999999998877 899999999988888888888999999999999999999999999998876421
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016320 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
.....+..|. +.+|++++.+ .+....++.++.+++.+++++|+.++++||.+...+++ .+..
T Consensus 158 --~~~~~~~~w~-------~~~gf~~~~~--------~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~-~~~~ 219 (328)
T 1g6q_1 158 --YKDEKLNYWQ-------DVYGFDYSPF--------VPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKS 219 (328)
T ss_dssp --HHHHHHHHTT-------CBTTBCCTTH--------HHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEE
T ss_pred --hhhhhhcccc-------cccCcChHHH--------hhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHh-ceee
Confidence 1123345673 7899999887 33344568888888999999999999999999888887 6788
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecC--CCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeC
Q 016320 281 KFLSSIRGEGTRLCGFSGWFDVHFRG--STEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRS 358 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~--~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~ 358 (391)
.|+++++ ++|++|||++|||++|++ + .+++.+||+|. .+.|||+|++|+|++|+.|++|++|++++.+.++
T Consensus 220 ~~~~~~~-~~g~~~g~~~wfd~~~~~~~~-----~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~ 292 (328)
T 1g6q_1 220 NFKLTAK-RQDMINGIVTWFDIVFPAPKG-----KRPVEFSTGPH-APYTHWKQTIFYFPDDLDAETGDTIEGELVCSPN 292 (328)
T ss_dssp EEEEEBC-SSCEEEEEEEEEEEECCCCTT-----SCCCEEECSTT-SCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEE
T ss_pred eEEEEEe-cCcEEEEEEEEEEEEcCCCCC-----CCceEEECCCC-cCCCcceeEEEEeCCceecCCCCEEEEEEEEEEC
Confidence 8999988 999999999999999965 3 45799999995 7889999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEEEEecccc
Q 016320 359 KENHRLLEVEFSCEIRESTG 378 (391)
Q Consensus 359 ~~~~r~~~~~~~~~~~~~~~ 378 (391)
.+++|.++|.++|.+++..+
T Consensus 293 ~~~~r~~~~~~~~~~~~~~~ 312 (328)
T 1g6q_1 293 EKNNRDLNIKISYKFESNGI 312 (328)
T ss_dssp TTEEEEEEEEEEEEEECCSS
T ss_pred CCCCceEEEEEEEEecCccC
Confidence 99999999999999998776
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=377.05 Aligned_cols=311 Identities=35% Similarity=0.635 Sum_probs=267.0
Q ss_pred ccccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHH
Q 016320 34 VDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS 113 (391)
Q Consensus 34 ~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~ 113 (391)
.....++..||+.|+....+..|++|..|+..|.++|.+.+...++++|||||||+|.+++.+++.|+.+|+|+|+|+|+
T Consensus 20 ~~~~~~d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~ 99 (340)
T 2fyt_A 20 DLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL 99 (340)
T ss_dssp ----------CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHH
T ss_pred ccCccchhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHH
Confidence 34455667799999999999999999999999999999887777889999999999999999999988799999999889
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeec
Q 016320 114 DHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~ 192 (391)
+.|+++++.+++.++++++++|+.++.++ ++||+|+++++++.+.++..+..++.++.++|||||.++|...+.++.++
T Consensus 100 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~ 179 (340)
T 2fyt_A 100 YQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAV 179 (340)
T ss_dssp HHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEe
Confidence 99999999999977899999999998877 89999999998888888888899999999999999999999999999887
Q ss_pred ccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCc
Q 016320 193 RSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV 272 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~ 272 (391)
.+.. .....+.+|. +.+|++++.+ .+..+..+.++.+.+..++++|+.+.++||.+...
T Consensus 180 ~~~~------~~~~~~~~w~-------~~~g~~~~~~--------~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~ 238 (340)
T 2fyt_A 180 SDVN------KHADRIAFWD-------DVYGFKMSCM--------KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSI 238 (340)
T ss_dssp CCHH------HHHHHTGGGG-------CBTTBCCGGG--------HHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCG
T ss_pred cchh------Hhhhhhcccc-------cccCcChHHH--------HHhhhcCcEEEEechhhcccCCEEEEEEECCCCcc
Confidence 5421 1223455673 7899999877 23334567788888888999999999999999887
Q ss_pred ccccceeeEEEEEEEecCceeEEEEEEEEeeec-CCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEE
Q 016320 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFR-GSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 351 (391)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~-~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~ 351 (391)
+++ .+...|.+.+. ++|++|||++||++.|+ ++ ++++.|||+|. .+.|||+|++|+|++|+.|++|++|++
T Consensus 239 ~~~-~~~~~~~~~~~-~~~~~~g~~~wfd~~~~~~~-----~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~ 310 (340)
T 2fyt_A 239 SDL-EFSSDFTLKIT-RTSMCTAIAGYFDIYFEKNC-----HNRVVFSTGPQ-STKTHWKQTVFLLEKPFSVKAGEALKG 310 (340)
T ss_dssp GGG-SEEEEEEEEBC-SCEEEEEEEEEEEEEECTTC-----SSCEEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred ccc-ceEeeEEEEEc-cCcEEEEEEEEEEEEeecCC-----CCCEEEECCCC-cCCCccccEEEEeCCceEcCCCCEEEE
Confidence 777 77888999988 99999999999999994 33 46799999995 779999999999999999999999999
Q ss_pred EEEEEeCCCCCeeeEEEEEEEE
Q 016320 352 SFSMTRSKENHRLLEVEFSCEI 373 (391)
Q Consensus 352 ~~~~~~~~~~~r~~~~~~~~~~ 373 (391)
++.+.++.+++|.|+|.++|..
T Consensus 311 ~~~~~~~~~~~r~~~~~~~~~~ 332 (340)
T 2fyt_A 311 KVTVHKNKKDPRSLTVTLTLNN 332 (340)
T ss_dssp EEEEEECSSCTTSEEEEEEETT
T ss_pred EEEEEECCCCCceEEEEEEEEc
Confidence 9999999999999988888843
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=394.27 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=241.9
Q ss_pred hhcCChHhHHHHHHHHHhcCC--------CCCCCEEEEECCcccHHHHHHHHcCCC-----eEEEEechHHHHHHHHHHH
Q 016320 55 EMLSDRVRMDAYFNSIFQNKH--------HFQGKTVLDVGTGSGILAIWSAQAGAR-----KVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~--------~~~~~~VLDlGcG~G~ls~~~a~~g~~-----~V~avD~s~~~~~a~~~~~ 121 (391)
.+-+|.++|+.|.+||.+++. ..+.++|||+|||+|.|+.++++++++ +|+|||.|+|+..|++.++
T Consensus 326 vFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~ 405 (637)
T 4gqb_A 326 VFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQ 405 (637)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHH
T ss_pred hhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHH
Confidence 346799999999999987541 234468999999999997777666443 6899999999999999999
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016320 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~ 201 (391)
.|++.++|+++++|++++.+|+++|+||||+|++++.+|.++ .++.++.|+|||||+++|+.+++|++|+++...
T Consensus 406 ~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l---- 480 (637)
T 4gqb_A 406 FEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKL---- 480 (637)
T ss_dssp HHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHH----
T ss_pred hccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHH----
Confidence 999999999999999999999999999999999999999887 688999999999999999999999999976421
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016320 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
+.+...+|. ..++++. .+.+|.+..++....+++|+.+++||+.+........+...
T Consensus 481 --~~e~~~~~~-------~~~~~~~--------------~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~ 537 (637)
T 4gqb_A 481 --YNEVRACRE-------KDRDPEA--------------QFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCT 537 (637)
T ss_dssp --HHHHHTTCC-------TTSCTTG--------------GGGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEE
T ss_pred --HHHHHhccc-------ccccchh--------------hcCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEE
Confidence 122223332 2333222 12346667777888999999999999987655444467788
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeCC
Q 016320 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSK 359 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~ 359 (391)
|++++. ++|++|||++|||++|+ +++.|||+|.. .++|||+|++|+|++|+.|++||+|+++| +|+.
T Consensus 538 ~~f~i~-~~g~vhGf~~wFD~~f~--------~~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~--~R~~ 606 (637)
T 4gqb_A 538 LEFPVE-VNTVLHGFAGYFETVLY--------QDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRF--WRCS 606 (637)
T ss_dssp EEEECC-SCEEEEEEEEEEEEEEE--------TTEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEE--EEEE
T ss_pred EEEEec-CCcEEEEEEEEEEEEee--------CCeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEE--EEEe
Confidence 999988 99999999999999995 46999999952 35799999999999999999999999887 5555
Q ss_pred CCCeeeEEEEEEEEeccc-cccCCcccceeee
Q 016320 360 ENHRLLEVEFSCEIREST-GQILPPIKNKFYI 390 (391)
Q Consensus 360 ~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 390 (391)
+++| |||||.|+.+. ..+.++.|.+|+|
T Consensus 607 d~~k---VWYEW~v~~p~~s~ihN~~Gr~y~i 635 (637)
T 4gqb_A 607 NSKK---VWYEWAVTAPVCSAIHNPTGRSYTI 635 (637)
T ss_dssp CSSE---EEEEEEEEESSCCCCBSGGGSSCCE
T ss_pred CCCc---eeEEEEEeCCcCccccCCCCceeee
Confidence 6667 99999999988 4457778888987
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=373.41 Aligned_cols=307 Identities=20% Similarity=0.266 Sum_probs=237.2
Q ss_pred HhhcCChHhHHHHHHHHHhcCCCC-----CCCEEEEECCcccHHHHHHHHc----C----------CCeEEEEechHHHH
Q 016320 54 KEMLSDRVRMDAYFNSIFQNKHHF-----QGKTVLDVGTGSGILAIWSAQA----G----------ARKVYAVEATKMSD 114 (391)
Q Consensus 54 ~~~l~d~~r~~~~~~~i~~~~~~~-----~~~~VLDlGcG~G~ls~~~a~~----g----------~~~V~avD~s~~~~ 114 (391)
+.|++|.+|+..|++||.+++... ++++|||||||+|.|+++++++ + +.+|+|||.|.++.
T Consensus 380 e~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~ 459 (745)
T 3ua3_A 380 NTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI 459 (745)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH
T ss_pred HHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH
Confidence 478999999999999998875322 2468999999999998655443 2 23899999995444
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCC------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 115 HARTLVKANNLQDVVEVIEGSVEDIVL------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.+.+....|++.++|+++++|++++.+ ++++|+||||+|++++.+|. .+.++..+.++|||||++||..++.|
T Consensus 460 ~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lkp~Gi~iP~~~t~y 538 (745)
T 3ua3_A 460 VTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLKPTTISIPQKYTSY 538 (745)
T ss_dssp HHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSCTTCEEESCEEEEE
T ss_pred HHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCCCCcEEECCccEEE
Confidence 454555569999999999999999987 79999999999999999885 45578888999999999999999999
Q ss_pred EeecccCcCccchhhccccccchhhhhhcCc--cccccccccCC------------CcchhhhhhhhcccCceeecCCCC
Q 016320 189 VAPIRSGLGDQKQQDYEGALDDWYSFLKETK--TYYGVDMSVLT------------KPFSEEQKKYYLQTSLWSNLHPDQ 254 (391)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~g~dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 254 (391)
++|+.+.. .|+....-.. -++||...... ..... .+...+.+|.+..+++..
T Consensus 539 laPi~~~~-------------l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~-~~~~a~e~PyVv~l~~~~ 604 (745)
T 3ua3_A 539 VKPIMSTH-------------IHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQG-HVRNNMDQIYVVYLSKYI 604 (745)
T ss_dssp EEEEECHH-------------HHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTC-HHHHHHSSCEEECCCSCE
T ss_pred EEEecCHH-------------HHHHHHhhcccccccccccccccccccccccccccccccc-cccccccccEEEeeccce
Confidence 99998742 2322111000 12333211000 00000 023345689999999999
Q ss_pred cccc-ceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCC--CCCCcc
Q 016320 255 VIGT-AAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY--NGTHWG 331 (391)
Q Consensus 255 ~ls~-p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~--~~~hW~ 331 (391)
++++ |+.+++||+.+....+. .++..|++++. ++|.+|||++|||+.|+ ++|.|||+|.+. .++||+
T Consensus 605 ~Ls~~pq~vftFdhp~~~~~d~-~r~~~~~F~~~-r~g~iHGfagwFDi~Ly--------k~V~LST~P~t~s~~mThWf 674 (745)
T 3ua3_A 605 PLAETTKPVFTFEHPNFMNSSN-ERSDSIEFVMD-RNADLMGFAGYFDLQLY--------KTVMLSIEPSTHTPGMVSWF 674 (745)
T ss_dssp ESSSSCEEEEEEESSCTTCCCS-CEEEEEEEECC-SSEEEEEEEEEEEEEEE--------TTEEEECSSTTCCTTCCSCC
T ss_pred ecCCCCceEEEEECCCCCcccc-ceeEEEEEEeC-CCcEEEEEEEEEEEEec--------CCcEEecCCCCCCCCCccce
Confidence 9999 99999999998776665 78889999999 99999999999999996 469999999643 368999
Q ss_pred ceEEecCCccccCCCCEEEEEEEEEeCCCCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016320 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 332 q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
|++|||++|+.|++|++|++++ +|+.+..+ |||||.++ .+. ..+-|..|.+|+|
T Consensus 675 QtfFPL~ePL~V~~GdeI~g~~--~R~~d~~k---VWYEW~v~~~~~~g~p~~~~ihN~~G~sy~~ 735 (745)
T 3ua3_A 675 PAVIPLRDQLRVGEGDRISLKI--DRKVDNTG---VWYEWHVEKKKTNGESVSTPIQNPNGESYYM 735 (745)
T ss_dssp CEEEEEEEEEEECTTCEEEEEE--EEEEETTE---EEEEEEEEEECTTSCEEECCCBSGGGSSCCE
T ss_pred eEEEecCCceEeCCCCEEEEEE--EEEcCCCC---EEEEEEEEeccCCCCccccccCCCCCcEEee
Confidence 9999999999999999999887 55555555 89999987 444 3446777888876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=346.44 Aligned_cols=318 Identities=35% Similarity=0.573 Sum_probs=258.2
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHH
Q 016320 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHA 116 (391)
Q Consensus 37 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a 116 (391)
..+...||+.|.+++.+..|++|..|+..|.++|.+.+...++.+|||||||+|.+++.++++|+.+|+|+|+|++++.|
T Consensus 9 ~~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a 88 (348)
T 2y1w_A 9 ESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHA 88 (348)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHH
T ss_pred cccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHH
Confidence 34456799999999999999999999999999999888777889999999999999999999988899999999888999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCc
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 196 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~ 196 (391)
+++++.+++.++++++.+|++++.++++||+|+|+++.+++..+..+. .+..+.++|||||.+++..++.+..|+....
T Consensus 89 ~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~~~~~-~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~ 167 (348)
T 2y1w_A 89 EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQ 167 (348)
T ss_dssp HHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTBTTTSHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcCChHHHHH-HHHHHHhhcCCCeEEEEecCcEEEEEecchH
Confidence 999999999888999999999988778999999998877776665444 4566789999999999999999998886431
Q ss_pred CccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccccc
Q 016320 197 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIR 276 (391)
Q Consensus 197 ~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~ 276 (391)
.. .+......+|.. ...+|+|++.+.+... ...+..|.++..+....+..+ ....+||.+...+++.
T Consensus 168 ~~---~~~~~~~~~w~~-----~~~~g~d~~~l~~~~~----~~~f~~p~~d~~~~~~~~~~~-~~~~~df~~~~~~~~~ 234 (348)
T 2y1w_A 168 LY---MEQFTKANFWYQ-----PSFHGVDLSALRGAAV----DEYFRQPVVDTFDIRILMAKS-VKYTVNFLEAKEGDLH 234 (348)
T ss_dssp HH---HHHHHHHGGGCC-----SCBTTBCCGGGHHHHH----HHHHTSCEEECCCGGGBCBCC-EEEEEETTTCCGGGGS
T ss_pred Hh---hhhccccCcccc-----cccCcccHHHhhhHHH----hhhccCCeEEeECCeeecCcc-eEEEEECCcCChHHhc
Confidence 11 111112344532 3678899887743221 123345666655544444444 4567799998888875
Q ss_pred ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEE
Q 016320 277 EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMT 356 (391)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~ 356 (391)
.+...+++++. ++|++|||++|||++|+++ ..++.|||+|. .+.|||+|++|+|++|+.|++|++|++++.+.
T Consensus 235 ~~~~~~~~~~~-~~g~~~g~~~wfd~~~~~~-----~~~v~lSt~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~ 307 (348)
T 2y1w_A 235 RIEIPFKFHML-HSGLVHGLAFWFDVAFIGS-----IMTVWLSTAPT-EPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLI 307 (348)
T ss_dssp EEEEEEEEEBS-SCEEEEEEEEEEEEEEECS-----SCEEEEECCTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEE
T ss_pred eeeeeEEEEEc-cCcEEEEEEEEEEEEEcCC-----CCceEEECCCC-cCCCeeeeEEEeeCCceEeCCCCEEEEEEEEE
Confidence 56778999988 9999999999999999764 45789999994 78999999999999999999999999999999
Q ss_pred eCCCCCeeeEEEEEEEEeccc
Q 016320 357 RSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 357 ~~~~~~r~~~~~~~~~~~~~~ 377 (391)
++..+ +++|+++|.++++.
T Consensus 308 ~~~~~--~~~~~~~~~~~~~~ 326 (348)
T 2y1w_A 308 ANKRQ--SYDISIVAQVDQTG 326 (348)
T ss_dssp ECTTS--SEEEEEEEEETTTC
T ss_pred ECCCC--CcEEEEEEEEcccc
Confidence 98754 57899999998875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=340.14 Aligned_cols=313 Identities=35% Similarity=0.579 Sum_probs=252.8
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016320 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.|++.|...+.+..|+.|..+++.|.+++.+.+...++.+|||||||+|.+++.+++.++.+|+|+|+|++++.|+++++
T Consensus 122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~ 201 (480)
T 3b3j_A 122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVK 201 (480)
T ss_dssp EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHH
Confidence 46677777777889999999999999999888766778999999999999999999988779999999988899999999
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016320 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~ 201 (391)
.+++.++|+++++|+.++.++++||+|+|+++.+++..+..+. .+..+.++|+|||.+++..++.+..|+..... +
T Consensus 202 ~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~-~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l---~ 277 (480)
T 3b3j_A 202 SNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQL---Y 277 (480)
T ss_dssp HTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHHTCHHHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHH---H
T ss_pred HcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhcCcHHHHH-HHHHHHHhcCCCCEEEEEeceeeeeccCchHH---H
Confidence 9999888999999999987778999999998877776665444 45577899999999999999999988864311 1
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016320 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
.+......+|.. ..++|+|++.+.+... ...+..|.++..+....++.+. ...+||.+...+++..+...
T Consensus 278 ~e~~~~~~~w~~-----~~~~g~dl~~l~~~~~----~~~f~~pvvd~~~~~~~y~~tl-~~~~d~~~~~~~~l~~~~~~ 347 (480)
T 3b3j_A 278 MEQFTKANFWYQ-----PSFHGVDLSALRGAAV----DEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIP 347 (480)
T ss_dssp HHHHHHHHHHHS-----SCBTTBCCGGGHHHHH----HHHTTSCEECCCCSTTBCSCCE-EEEEETTTCCTTTTTEEEEE
T ss_pred HHHhhccCcccc-----ccCCCcChhhhhhHHH----HhccCCcEEEEeecccccchhh-hhhhhhhcCChhhhcceeee
Confidence 010012344542 3688999988743221 1223456666555555565554 46899999888887556778
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCC
Q 016320 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKEN 361 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~ 361 (391)
|++.+. ++|.+|||++|||++|+++ ..++.|||+|. .+.|||+|++|+|++|+.|++|++|++++.+.++..+
T Consensus 348 ~~~~~~-~~g~~hg~~~wFd~~~~~~-----~~~v~lST~P~-~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~ 420 (480)
T 3b3j_A 348 FKFHML-HSGLVHGLAFWFDVAFIGS-----IMTVWLSTAPT-EPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQ 420 (480)
T ss_dssp EEEECS-SCEEEEEEEEEEEEEEECS-----SCEEESSSCCS-SSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTS
T ss_pred EEEEEc-cCcEEEEEEEEEEEEEcCC-----CCceEEeCCCC-cCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCC
Confidence 999888 9999999999999999764 45789999994 7899999999999999999999999999999998654
Q ss_pred CeeeEEEEEEEEeccc
Q 016320 362 HRLLEVEFSCEIREST 377 (391)
Q Consensus 362 ~r~~~~~~~~~~~~~~ 377 (391)
+++|||+|.++++.
T Consensus 421 --~~~v~~~~~~~~~~ 434 (480)
T 3b3j_A 421 --SYDISIVAQVDQTG 434 (480)
T ss_dssp --SEEEEEEEEETTTC
T ss_pred --CcEEEEEEEEccCC
Confidence 55899999998865
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=139.98 Aligned_cols=114 Identities=22% Similarity=0.252 Sum_probs=95.9
Q ss_pred HHHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 69 SIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 69 ~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
.+...+. ..++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++++..++.++++++++|+.+++++ ++|
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL 115 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence 3344443 45679999999999999999999866689999999 99999999999999988899999999998765 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|+|+|..+.+.+ ....++..+.++|||||.+++....
T Consensus 116 D~i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 116 DLIWSEGAIYNI----GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EEEEESSCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEEEEcCCceec----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 999996543333 3678899999999999999877554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=138.47 Aligned_cols=136 Identities=26% Similarity=0.389 Sum_probs=93.0
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016320 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 37 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
.+++..||+.|...+.... ..........+...+...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.
T Consensus 7 ~y~~~~~~~~y~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 82 (253)
T 3g5l_A 7 KYDDKHFFEQYSQMPRSKE----GLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTE 82 (253)
T ss_dssp ------------------C----HHHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred ccccHHHHHHHHHhhcccc----cccchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 3566677777766554321 112222234456666666889999999999999999999988789999999 99999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+++.. ..+++++++|+.+++++ ++||+|++..+.+.+ .++..+++.+.++|||||.+++.
T Consensus 83 a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 83 AKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp HHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEE
Confidence 988765 34599999999998775 899999995432222 45788999999999999999875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=139.66 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=89.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC---CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG---ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g---~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
..++.+|||||||+|.++..+++.. ..+|+|||+| .|++.|+++++..+...+|+++++|+.++++ +++|+|++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 3578999999999999999999862 1279999999 9999999999998888889999999999876 579999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
...+++.. .....++++++++|||||.+++..
T Consensus 147 ~~l~~~~~-~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 147 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeecCc-hhHhHHHHHHHHHcCCCcEEEEEe
Confidence 54444332 245678999999999999998753
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=135.98 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=93.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~ 152 (391)
...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..+++.++++++++|+.+++++ ++||+|++..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 445678999999999999999999865589999999 99999999999999988899999999988766 8999999965
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+.+.+ ....++..+.++|+|||.+++....
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 43333 3678899999999999999877644
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=135.70 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=89.9
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
......++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|++++..++.. ++++++|+.++..+++||+|++
T Consensus 35 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~v~~ 111 (252)
T 1wzn_A 35 KEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFKNEFDAVTM 111 (252)
T ss_dssp HHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--CEEEESCGGGCCCCSCEEEEEE
T ss_pred HHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCc--eEEEECChhhcccCCCccEEEE
Confidence 333345678999999999999999999987 79999999 9999999999887763 9999999999877789999998
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
...............++..+.++|+|||.+++...
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 42122222334577889999999999999987543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=136.84 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
...+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 3344555666667789999999999999999988633489999999 99999999999999888899999999998766
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++||+|++..+.+ +-.+...++..+.++|||||.+++...
T Consensus 128 ~~fD~v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 128 ASFDAVWALESLH---HMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TCEEEEEEESCTT---TSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCccEEEEechhh---hCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 7899999843322 223467889999999999999987643
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=132.40 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
+..+.+.+.+.+...++ +|||+|||+|.++..+++....+|+++|++ .+++.|+++++..++.++++++++|+.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 107 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI 107 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence 33444555555444444 999999999999999998733489999999 9999999999999988789999999999876
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ++||+|++..+.+.+ .....+++.+.++|+|||.+++.
T Consensus 108 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 108 EDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp CTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEE
Confidence 6 789999995433332 45778999999999999998875
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=134.06 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
..+...+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++....+ +++++++|+.++..+
T Consensus 37 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~ 112 (216)
T 3ofk_A 37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTA 112 (216)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCS
T ss_pred HHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCC
Confidence 35555666566666778999999999999999999876 89999999 99999998876643 499999999998866
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|++..+.+.+.....+..++..+.++|+|||.+++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 89999999654444443334567899999999999999864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.82 Aligned_cols=136 Identities=16% Similarity=0.222 Sum_probs=101.0
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCC--CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHH--FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~--~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+.++..|+... .....++.+.+.+.+.+.. .++.+|||||||+|.++..+++.+. +|+++|+| .|++.|+++
T Consensus 2 ~y~~~a~~yd~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~ 78 (246)
T 1y8c_A 2 CYNKFAHIYDKLI--RADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp CHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc--cccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHH
Confidence 3556666665421 1022334444444444322 3678999999999999999999876 79999999 999999999
Q ss_pred HHHcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 120 VKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+. +++++++|+.+++++++||+|++.. ..+.+.....+..++..+.++|+|||.+++.
T Consensus 79 ~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 79 FRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhcCC--CeEEEecccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 988776 4899999999987778999999953 3333323246788999999999999998864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-15 Score=135.21 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=96.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
...+.+...+...++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++..++.++++++++|+.++.+++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 3444555556667889999999999999999988733389999999 999999999999998877999999999887668
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|+|....+.. .+...++..+.++|||||.+++...
T Consensus 103 ~fD~V~~~~~~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 103 KCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCEEEECCChHhc---CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 89999984332222 2467889999999999999987654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=138.15 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+...+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|++++..+++.++++++.+|+.++ +++|
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~f 138 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV 138 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCc
Confidence 34555556677899999999999999999998 75 89999999 99999999999999988899999999987 6899
Q ss_pred cEEEEccccccc-c-----CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFL-L-----RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l-~-----~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+|++..+.+.+ . .......++..+.++|||||.+++...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999995443333 2 114567899999999999999987543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=131.39 Aligned_cols=105 Identities=24% Similarity=0.345 Sum_probs=87.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~Ivs~~ 152 (391)
.++.+|||+|||+|.+++.+++.++.+|+|+|+| .|++.|+++++.+++ ++++++++|+.++. + .++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 5778999999999999998888888789999999 999999999999988 45999999998863 2 47999999976
Q ss_pred ccccccCcchHHHHHHHHhc--cccCCeEEEccc
Q 016320 153 MGYFLLRESMFDSVICARDR--WLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~--~LkpgG~~i~~~ 184 (391)
. +.. .......++..+.+ +|+|||.+++..
T Consensus 122 p-~~~-~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 122 P-YNV-DSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp C-TTS-CHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred C-CCc-chhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 4 221 12356778888877 999999998753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-15 Score=133.15 Aligned_cols=132 Identities=21% Similarity=0.326 Sum_probs=100.9
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
.|+.++..|+. +.+...+..+.+.+...+. ++.+|||+|||+|.++..+++. .+|+++|+| .+++.|+++..
T Consensus 3 ~y~~~a~~yd~---~~~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDE---LMQDVPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHH---HTTTCCHHHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---hhhcccHHHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhh
Confidence 46666777765 3334445667777776653 4689999999999999999887 489999999 99999999988
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++. +++++++|+.+++++++||+|++.. ..+.+.....+..+++.+.++|+|||.+++.
T Consensus 76 ~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 76 ETNR--HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp HTTC--CCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC--ceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 7763 4899999999987778999999842 2223323345778899999999999999864
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=132.38 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=99.5
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHH
Q 016320 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHAR 117 (391)
Q Consensus 41 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~ 117 (391)
..+|+..+..|+......... +..+.+.+...+. ..++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|+
T Consensus 7 ~~~f~~~a~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 85 (234)
T 3dtn_A 7 KRKFDAVSGKYDEQRRKFIPC-FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK 85 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhCcC-HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 345666665555432211111 2233344444443 4567899999999999999999883 3489999999 9999999
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 118 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++...+ +++++++|+.+++++++||+|++..+.+.+. ......+++.+.++|||||.+++..
T Consensus 86 ~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 86 NRFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp HHTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCC---CEEEEeCchhccCCCCCceEEEEeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8876554 5999999999988778999999955333332 2223468999999999999998654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-15 Score=135.75 Aligned_cols=103 Identities=28% Similarity=0.349 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~~ 154 (391)
++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...++..+++++++|+.++. .+++||+|++..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999977 89999999 999999999999888777999999999986 34899999995433
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+.+ .+...++..+.++|||||.+++..
T Consensus 147 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWV---ADPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGC---SCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcc---cCHHHHHHHHHHHcCCCeEEEEEE
Confidence 222 356789999999999999998653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=136.50 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=90.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++....++..+++++++|+.++++ +++||+|++...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 5678999999999999998988887689999999 9999999999988887779999999998765 378999998543
Q ss_pred -cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 -GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 -~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.+.+......++..+.++|+|||.+++..
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2222334567889999999999999998654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=129.07 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+.+.+.+.+.+.+. ++.+|||||||+|.++..+++.+. +|+++|+| .+++.|+++...++ .+++++++|+.+++
T Consensus 24 ~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 24 RIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS 98 (227)
T ss_dssp HHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC
Confidence 44555566666543 478999999999999999999987 89999999 99999999998876 44999999999877
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++ ++||+|++..... ..+......++..+.++|+|||.+++..
T Consensus 99 ~~~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFIMYF 142 (227)
T ss_dssp SCTTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65 7899999964311 2233356788999999999999988653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-15 Score=138.24 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=96.4
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC---CcEEEEEcc
Q 016320 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ---DVVEVIEGS 135 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d 135 (391)
..+.+.+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++...+.. .++.+..+|
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 445666777776665556778999999999999999999988 89999999 9999999887544322 247899999
Q ss_pred cccCC---CC-CcccEEEEc--ccccccc---CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 136 VEDIV---LP-EKVDVIISE--WMGYFLL---RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 136 ~~~~~---~~-~~~D~Ivs~--~~~~~l~---~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.+++ ++ ++||+|+|. .+.++.. .......+++.+.++|||||.+++...
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98876 44 899999994 3333322 123478899999999999999987643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=134.29 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=93.9
Q ss_pred HHHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 69 SIFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
.+.+.+. ..++.+|||||||+|.++..+++. +. +|+|+|++ .+++.|+++++.+++.++++++++|+.+++++ ++
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 3555555 567789999999999999999988 66 79999999 99999999999999988899999999998766 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++..+.+.+ ....++..+.++|||||.+++..
T Consensus 186 fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 186 VTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999995433332 27889999999999999998643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=129.09 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCC----cEEEEEcccccCCCC-
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQD----VVEVIEGSVEDIVLP- 142 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~- 142 (391)
+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..+++.. +++++++|+.....+
T Consensus 21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 100 (217)
T 3jwh_A 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRF 100 (217)
T ss_dssp HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGG
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccC
Confidence 33333335678999999999999999999753 589999999 99999999998887764 699999999766544
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++||+|+|..+...+ ....+..+++.+.++|||||.++....
T Consensus 101 ~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 101 HGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 789999985443333 223457889999999999998775433
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-15 Score=140.94 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|++++...++. .+++++++|+.+++++++||+|++....
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS 160 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence 345899999999999999999986 79999999 9999999999877642 4599999999998878999999873211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
...........+++.+.++|+|||.+++...
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 1222223467889999999999999987643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=125.16 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
.++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|+++++.+++ +++++++.+..++. .+++||+|++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~- 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL- 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC-
Confidence 4678999999999999999999854 89999999 999999999999988 55999998887752 247899999864
Q ss_pred ccccc-------CcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLL-------RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~-------~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++.. .......++..+.++|||||.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 33222 12234567888999999999988653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=132.26 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=88.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+...++.+|||||||+|.++..+++.+. +|+++|+| .|++.|++++...++.+ ++++++|+.+++++ ++||+|+|.
T Consensus 33 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~l~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 33 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVTCR 110 (260)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSCTTCEEEEEEE
T ss_pred hCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHhCCCCCCCEEEEEEh
Confidence 3445788999999999999999998876 89999999 99999999998888764 99999999998876 799999995
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+. -.+...++..+.++|||||.+++.
T Consensus 111 ~~l~~---~~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 111 IAAHH---FPNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp SCGGG---CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhHh---cCCHHHHHHHHHHHcCCCCEEEEE
Confidence 43222 235678999999999999999875
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=130.22 Aligned_cols=105 Identities=22% Similarity=0.333 Sum_probs=86.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC---CCc-ccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL---PEK-VDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~---~~~-~D~Ivs~ 151 (391)
++.+|||+|||+|.+++.+++.++.+|+|+|+| .|++.|+++++.+++. ++++++++|+.++.. +++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 578999999999999999888887789999999 9999999999999984 459999999987532 367 9999997
Q ss_pred cccccccCcchHHHHHHHH--hccccCCeEEEcccce
Q 016320 152 WMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~~~ 186 (391)
+. +. ......++..+ .++|+|||.+++....
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 64 22 33566777777 7889999999876443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=123.83 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=89.6
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.+...++.+|||+|||+|.++..+++.+. +|+++|+| .+++.|++++..+++.+ ++++.+|+.+++++++||+|++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~~ 104 (199)
T 2xvm_A 27 AVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYDFILST 104 (199)
T ss_dssp HTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCCCCCEEEEEEE
T ss_pred HhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCCCCCceEEEEc
Confidence 34445678999999999999999999876 89999999 99999999998888754 99999999988767899999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+.+.+. ......++..+.++|+|||.+++
T Consensus 105 ~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 105 VVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred chhhhCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 5433332 23577899999999999999765
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-14 Score=125.10 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.+++.+++.+. +|+|+|++ .+++.|+++++.+++.++++++++|+.+. ...++||+
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~ 125 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEA 125 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSE
T ss_pred HHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCE
Confidence 44444556788999999999999999999954 89999999 99999999999999986799999999883 33368999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++.. .+ ... +++.+.++|+|||.+++...
T Consensus 126 v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 126 VFIGG---GG----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp EEECS---CC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred EEECC---cc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 99854 11 245 89999999999999986543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=129.32 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=98.7
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHh-cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~-~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~ 120 (391)
.|+..+..|..... ......+.+.+.+.. .....++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++++
T Consensus 4 ~~~~~a~~y~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~ 81 (263)
T 2yqz_A 4 ALLRAAYAYDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI 81 (263)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT
T ss_pred chHHHHHHHhhhcc-cChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence 45555666655332 233344455555533 22345678999999999999999998876 89999999 9999999887
Q ss_pred HHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 121 KANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 121 ~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... ..+++++++|+.+++++ ++||+|++.... .+..+...++..+.++|+|||.+++.
T Consensus 82 -~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l---~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 82 -AGV-DRKVQVVQADARAIPLPDESVHGVIVVHLW---HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTS-CTTEEEEESCTTSCCSCTTCEEEEEEESCG---GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hcc-CCceEEEEcccccCCCCCCCeeEEEECCch---hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 322 34599999999988765 789999984432 22235678899999999999999876
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-15 Score=132.13 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=82.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++... +++++++|+.++..+++||+|++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~-- 112 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHV-- 112 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESC--
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhH--
Confidence 4677899999999999999999887 79999999 999999887543 49999999998854589999998443
Q ss_pred cccCcchHHHHHHHHh-ccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARD-RWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~-~~LkpgG~~i~~~ 184 (391)
+.+-.+...+++++. ++|||||.+++..
T Consensus 113 -l~~~~~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 113 -LEHIDDPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -GGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -HHhhcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 222235678999999 9999999988753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=128.42 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
...+.+.+...+ .++.+|||+|||+|.++..+++.|..+|+++|+| .+++.|+++... ..+++++++|+.++++
T Consensus 29 ~~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~ 103 (215)
T 2pxx_A 29 FSSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDF 103 (215)
T ss_dssp HHHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCC
Confidence 344566666654 5678999999999999999999987689999999 999999988754 1358999999998876
Q ss_pred C-CcccEEEEcccccccc------------CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 142 P-EKVDVIISEWMGYFLL------------RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~-~~~D~Ivs~~~~~~l~------------~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ ++||+|++..+...+. +......++..+.++|+|||.+++...
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 5 7899999854322221 123457889999999999999886543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-15 Score=130.36 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=81.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-----------CCCcEEEEEcccccCCCC-
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-----------LQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-----------~~~~v~~~~~d~~~~~~~- 142 (391)
..++.+|||+|||+|..+..+++.|+ +|+|||+| .|++.|+++..... ...+++++++|+.+++++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 34678999999999999999999988 89999999 99999998764310 023489999999998764
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
++||+|++....+.+. ......+++.+.++|||||+++
T Consensus 99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEE
T ss_pred CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence 6899999854333332 3345678999999999999844
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=132.45 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~-~~~ 155 (391)
++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. +++++++|+.+++.+++||+|+|.. ...
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVTCMFSSIG 122 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEEECTTGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEEEcCchhh
Confidence 568999999999999999999877 79999999 99999988643 3899999999987778999999953 333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.....+..+++.+.++|+|||.+++.
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3333345778899999999999999986
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=132.30 Aligned_cols=107 Identities=22% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|++++...++.++++++++|+.+++++ ++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5567889999999999999999987 66 89999999 99999999999988887899999999998766 789999984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.+.+ .+...++..+.++|||||.+++...
T Consensus 158 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 158 DAFLHS---PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhc---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 432222 3468899999999999999987643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=127.73 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCC----cEEEEEcccccCCCC-CcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQD----VVEVIEGSVEDIVLP-EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~-~~~D~Iv 149 (391)
.++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..+++.+ +++++++|+.....+ ++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4678999999999999999998753 589999999 99999999998877754 699999999776544 7899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|..+...+ ....+..+++.+.++|||||.++..
T Consensus 108 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 108 VIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 85433333 2224578899999999999977644
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=132.04 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=92.4
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016320 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 37 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
.......|+..+..+.+.....+ ...+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.
T Consensus 7 ~~s~a~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~ 82 (261)
T 3iv6_A 7 TNSKAEAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDD 82 (261)
T ss_dssp TCTTHHHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 33445677776665554211111 122334455566667889999999999999999999987 89999999 99999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCC------CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIV------LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|++++..+. +. .++.++. ..++||+|+|+.+.+.+.. .....++..+.++| |||+++++.
T Consensus 83 Ar~~~~~~~----v~---~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 83 LAEALADRC----VT---IDLLDITAEIPKELAGHFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp HHHHTSSSC----CE---EEECCTTSCCCGGGTTCCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred HHHHHHhcc----ce---eeeeecccccccccCCCccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEe
Confidence 999876541 22 2333322 2468999999654333322 24667888999999 999998653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=131.23 Aligned_cols=104 Identities=16% Similarity=-0.003 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----------cC------CCCcEEEEEcccccC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----------NN------LQDVVEVIEGSVEDI 139 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----------~~------~~~~v~~~~~d~~~~ 139 (391)
.++.+|||+|||+|..+..+++.|. +|+|||+| .|++.|++.... ++ ...+|+++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999999998 79999999 999999765431 00 123599999999998
Q ss_pred CCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 140 VLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+.+ ++||+|++......+. ......+++.+.++|||||++++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence 764 7999999854333332 33567889999999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=124.77 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~Ivs 150 (391)
.++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.++++++++|+.+... +++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 4678999999999999999888877799999999 9999999999999887779999999987421 478999999
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016320 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~ 184 (391)
++. +.. .....++..+ .++|+|||.+++..
T Consensus 123 ~~~-~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 123 DPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp CCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCC-CCc---hhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 764 221 2344556666 89999999988653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=125.53 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~Ivs~~ 152 (391)
..++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.++++++.+|+.+. + .+++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45678999999999999999999877799999999 99999999999998877799999999874 2 336799999975
Q ss_pred ccccccCcchHHHHHHHHh--ccccCCeEEEccc
Q 016320 153 MGYFLLRESMFDSVICARD--RWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~ 184 (391)
.... .....++..+. ++|+|||.+++..
T Consensus 109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 109 PYAK----ETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCc----chHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 3211 23445566665 9999999988653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=130.40 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=88.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.+...+...++.+|||||||+|.++..+++.+..+|+++|+| .+++.|+++... .+++++++|+.+++++ ++||
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCce
Confidence 455556666789999999999999999999987689999999 999998876543 2499999999988765 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|++..+.+ +......++..+.++|+|||.+++..
T Consensus 110 ~v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 110 LAYSSLALH---YVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecccc---ccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 999844322 22357788999999999999998754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=122.35 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
..+...+...++.+|||+|||+|.++..+++.+ ..+|+++|+| .+++.|+++++.+++ ++++++++|+.+.... ++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCC
Confidence 344455556778999999999999999999986 4589999999 999999999999888 4599999999765433 78
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|++..... ....+++.+.++|+|||.+++.
T Consensus 109 ~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 109 PDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEE
Confidence 99999854221 4678899999999999999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-15 Score=136.91 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCC----------------------------
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQ---------------------------- 126 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~---------------------------- 126 (391)
.++++|||||||+|.+++.+++. +..+|+|+|++ .|++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46789999999999999999987 45589999999 9999999987655422
Q ss_pred -----------------------------CcEEEEEcccccCC------CCCcccEEEEcccccccc---CcchHHHHHH
Q 016320 127 -----------------------------DVVEVIEGSVEDIV------LPEKVDVIISEWMGYFLL---RESMFDSVIC 168 (391)
Q Consensus 127 -----------------------------~~v~~~~~d~~~~~------~~~~~D~Ivs~~~~~~l~---~e~~~~~~l~ 168 (391)
++|+++++|+.... ..++||+|+|..+...++ ....+..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 56999999997654 347999999955432221 3335778999
Q ss_pred HHhccccCCeEEEccc
Q 016320 169 ARDRWLKPTGVMYPSH 184 (391)
Q Consensus 169 ~~~~~LkpgG~~i~~~ 184 (391)
.+.++|+|||++++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999998753
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=126.12 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=94.7
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016320 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
...||+..+..|+...--........+.+.+ ....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++
T Consensus 11 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~l---~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 11 QLSYYRARASEYDATFVPYMDSAAPAALERL---RAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHHGGGHHHHHHHHHTTTHHHHHHHH---TTTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---hcCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh
Confidence 4567777766665410000000112222222 2245668999999999999999999977 89999999 89998887
Q ss_pred HHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 119 LVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 119 ~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.. +++++++|+.++..+++||+|++..+.+.+.. ..+..+++.+.++|+|||.+++...
T Consensus 87 ----~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 87 ----HGLD-NVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp ----GCCT-TEEEEECCTTSCCCSSCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----cCCC-CeEEEecccccCCCCCceeEEEEechhhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4443 49999999998844489999999543333322 2257889999999999999987643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=128.53 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=94.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
.+.+.+.+...++.+|||||||+|.++..+++ .|. +|+|+|+| .+++.|++++...++.++++++.+|+.+++ ++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~ 129 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EP 129 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CC
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CC
Confidence 34455556666788999999999999999884 576 89999999 999999999998888778999999998775 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
||+|++..+...+.. .....++..+.++|||||.+++....
T Consensus 130 fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred eeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999998543333222 35678899999999999999876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=131.30 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=88.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++ +++++++|+.++..+++||+|++..+.+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchh
Confidence 3678999999999999999999988 89999999 999999999999887 4999999999987778999999966544
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++. ......++..+.++|+|||.+++
T Consensus 196 ~~~-~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 196 FLN-RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 443 33577899999999999999775
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=128.05 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=91.2
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
...+...+...++.+|||||||+|.++..+++.+..+|+++|+| .+++.|++++... .+++++++|+.+++++ ++
T Consensus 82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCC
Confidence 34444555556789999999999999999998876689999999 9999999887654 4599999999998765 78
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++..+.+.+.. ..+..++..+.++|+|||.+++..
T Consensus 159 fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999543333322 357788999999999999998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=130.61 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=89.6
Q ss_pred CCCC-CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEE
Q 016320 74 KHHF-QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 74 ~~~~-~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-~~~~D~I 148 (391)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|++++..+++.++++++++|+.++. + +++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 3445 688999999999999999999876689999999 999999999999999988999999999875 2 4799999
Q ss_pred EEccccccc-----cC------------cchHHHHHHHHhccccCCeEEEc
Q 016320 149 ISEWMGYFL-----LR------------ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l-----~~------------e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++++..+.. .. ...+..++..+.++|+|||.+++
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 998642211 00 02356789999999999999886
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=131.02 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
++.+|||||||+|.++..+++.+..+|+++|+| .+++.|++++..++ ..+++++.+|+.++.++ ++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 578999999999999999888876689999999 99999999887664 23489999999988766 5899999854333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+.. ..+..++..+.++|+|||.+++..
T Consensus 158 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 158 HLTD-QHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 2221 235688999999999999998753
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-15 Score=136.35 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL---------------------------- 125 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~---------------------------- 125 (391)
...++.+|||||||+|.++..++..|+.+|+|+|+| .|++.|+++++.+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 345778999999999999888888888789999999 999999987765421
Q ss_pred CCcEE-EEEcccccC-CC----CCcccEEEEccccccc-cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 126 QDVVE-VIEGSVEDI-VL----PEKVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 126 ~~~v~-~~~~d~~~~-~~----~~~~D~Ivs~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...++ ++++|+.+. ++ .++||+|+|..+.+.. .....+..++..+.++|||||.+++.
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01244 899999874 21 2689999996543332 22235678899999999999999876
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-15 Score=130.08 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++.. .+++++++|+.+++.+++||+|++..+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 117 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFH 117 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchh
Confidence 4678999999999999999999876 89999999 89999988754 34899999999987768999999954333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+... ....++..+.++|||||.+++..
T Consensus 118 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 118 HLTDD-EKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp GSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCChH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 32211 12338999999999999998763
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=132.25 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.++.+|+|+|+| .+++.|+++++.|++.++++++++|+.++...++||+|++++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR 203 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCchh
Confidence 4588999999999999999999987689999999 999999999999999888999999999987678999999975421
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
...++..+.++|+|||.++....
T Consensus 204 -------~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 204 -------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCCeEEEEEEe
Confidence 13467778889999999986543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=125.55 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=96.4
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016320 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 38 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
.....||+..+..|.. .... ...+. .+...+ .++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|
T Consensus 11 ~~~~~~~~~~~~~y~~---~~~~--~~~~~-~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 81 (211)
T 3e23_A 11 DDTLRFYRGNATAYAE---RQPR--SATLT-KFLGEL--PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEA 81 (211)
T ss_dssp HHHHHHHHHSHHHHTT---CCCC--CHHHH-HHHTTS--CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---ccch--hHHHH-HHHHhc--CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHH
Confidence 3456688877766655 2211 22222 333332 3578999999999999999999977 89999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++. .++++.+|+.+++..++||+|++..+.+.+. ...+..+++.+.++|||||.+++.
T Consensus 82 ~~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 82 SRRL-------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp HHHH-------TSCCEECCGGGCCCCSCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhc-------CCceEEeeeccCCCCCcEEEEEecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9876 2778899999988668999999954333332 225778899999999999999875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=129.90 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
..+.+.+.+...++.+|||||||+|.++..+++. |+ +|+|+|+| .+++.|++++...++.++++++.+|+.+++ +
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~ 154 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--E 154 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--C
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--C
Confidence 3345555566667899999999999999999987 77 89999999 999999999999888878999999998874 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|++..+...+.. .....++..+.++|||||.+++...
T Consensus 155 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8999998543332221 3578899999999999999987544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=129.05 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
.+.+.+.......++.+|||||||+|.++..+++.+ ..+|+++|++ .+++.|++++..+++.+ ++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCCC
Confidence 344455555555678999999999999999999884 3489999999 99999999999988864 99999999998765
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|++..+.+.+ .+...++..+.++|+|||.+++..
T Consensus 103 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999985433322 346788999999999999988654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=127.86 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~Ivs~ 151 (391)
++.+|||||||+|.+++.+++. ...+|+|+|+| .|++.|+++++.+++.+ ++++++|+.++.. .++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEEe
Confidence 6789999999999999998864 33489999999 99999999999999875 9999999988764 3789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ ..+..+++.+.++|+|||.+++.
T Consensus 149 ~~-------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 149 AV-------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cc-------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 42 24678899999999999998764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=126.77 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=89.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~ 151 (391)
+...++.+|||||||+|.++..+++.+. +|+++|++ .|++.|++++..+++.+ ++++++|+.+++++ ++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCTTCEEEEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccCCCCCCcEEEEEEC
Confidence 3456789999999999999999998876 89999999 99999999998888764 99999999988766 789999995
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
...+. ..+...++..+.++|+|||.+++..
T Consensus 95 ~~l~~---~~~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 95 YAAHH---FSDVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp SCGGG---CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cchhh---ccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 43222 2356788999999999999988753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=132.25 Aligned_cols=105 Identities=25% Similarity=0.193 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
.+.+.|.... ..+.+|||||||+|.++..+++.+. +|+|||+| .|++.|++. .+|+++++|+++++++
T Consensus 28 ~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~ 97 (257)
T 4hg2_A 28 ALFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPP 97 (257)
T ss_dssp HHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCS
T ss_pred HHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccC
Confidence 3445555543 2357899999999999999999886 89999999 898876531 3499999999999887
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|+|... +++. +.+.++.++.|+|||||++++.
T Consensus 98 ~sfD~v~~~~~---~h~~-~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 98 ASVDVAIAAQA---MHWF-DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp SCEEEEEECSC---CTTC-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccEEEEeee---hhHh-hHHHHHHHHHHHcCCCCEEEEE
Confidence 89999999432 2222 3677899999999999998754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=127.57 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~Ivs 150 (391)
.++.+|||||||+|.+++.++.. +..+|+++|++ .+++.|+++++.+++.+ |+++++|++++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 45789999999999999999887 45589999999 99999999999999976 9999999998754 278999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+. .+..+++.+.++|||||.++...
T Consensus 158 ~a~~-------~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAVA-------PLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESSC-------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCcC-------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 5432 35788999999999999988543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=126.23 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=83.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CC-CCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VL-PEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~D~Ivs~~~~ 154 (391)
++.+|||+|||+|.+++.+++.++.+|+++|+| .|++.|+++++.+++ ++++++++|+.+. +. .++||+|++++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 578999999999999999888887799999999 999999999999988 4599999999873 33 368999999764
Q ss_pred ccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016320 155 YFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
+. ......+++.+. ++|+|||++++...
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 22 223455666664 56999999886643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=126.13 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=81.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~ 156 (391)
+.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++. .+++++++|+.+++++ ++||+|++..+.+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 67899999999999999999987 79999999 9999988762 2389999999998765 89999999543333
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+. ......++..+.++|+|||.+++.
T Consensus 115 ~~-~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 115 MG-PGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp CC-TTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 235788999999999999998865
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=125.75 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=85.8
Q ss_pred cCCCCCCCEEEEECCcccHHH-HHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 73 NKHHFQGKTVLDVGTGSGILA-IWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls-~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
.+...++.+|||||||+|.++ +.+++. |+ +|+|+|++ +|++.|++++++.++ ++|+++++|+.+++ .++||+|+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~ 193 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLM 193 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEE
Confidence 345678899999999998665 566765 55 89999999 999999999999898 67999999999875 58999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+... ......+++.+.++|||||+++...
T Consensus 194 ~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 194 VAAL------AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ECTT------CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECCC------ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 7442 1356788999999999999998653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=134.17 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=96.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHH--HcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSA--QAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a--~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
.+...|.+.+... ..++.+|||||||+|.++..++ .....+|+|+|+| .+++.|++++..+++.++++++++|+.
T Consensus 103 ~~~~~~~~~l~~~--l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 180 (305)
T 3ocj_A 103 ERHGHFRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180 (305)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG
T ss_pred HHHHHHHHHHHhh--CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh
Confidence 3344455555433 3567899999999999999885 3334589999999 999999999999998888999999999
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 138 ~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++++++||+|++..+.+++........++..+.++|||||.+++..
T Consensus 181 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 181 KLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GCCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 98877999999996544444333334458999999999999998754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=128.25 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=89.7
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~ 141 (391)
+.+.|..... .++.+|||||||+|.++..+++ .+..+|+|+|+| .+++.|+++++.. +...+++++++|+.++++
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF 103 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence 3444544432 4678999999999999999996 345589999999 9999999999887 445669999999998764
Q ss_pred C-------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 P-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~-------~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ ++||+|++..+.+.+ ++..++..+.++|+|||.+++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEE
Confidence 3 589999995433333 5778999999999999999874
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=128.30 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=88.8
Q ss_pred cchhhhhhhhhhhhhHhh-cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016320 39 DFANYFCTYAFLYHQKEM-LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 39 ~~~~y~~~~~~~~~~~~~-l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
....+|+..+..+..... ..+......+.+.+...+ .++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 91 (242)
T 3l8d_A 15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKG 91 (242)
T ss_dssp -----------------CHHHHTSTTTTHHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 345566665555443110 001112223444555544 3678999999999999999999977 79999999 899988
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++. ...+++++++|+.+++++ ++||+|++..+ +.+......++..+.++|+|||.+++..
T Consensus 92 ~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 92 KERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS---LEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp HTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC---TTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh---HhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 8764 224599999999998765 89999998433 2223456788999999999999988764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=127.97 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++.++ .+++++++|+.++ +++ ++||+|+++.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 4678999999999999999988776689999999 99999999887766 4599999999987 565 7899999942
Q ss_pred cc-cc-ccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 153 MG-YF-LLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~-~~-l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.. .. .........++..+.++|||||++++....
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 22 11 112233557789999999999998865443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-14 Score=124.60 Aligned_cols=108 Identities=30% Similarity=0.310 Sum_probs=89.7
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
..+...++.+|||+|||+|.++..+++.+ ..+|+++|+| .+++.|++++..+++. +++++.+|+.++.++ ++||+
T Consensus 31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~ 109 (219)
T 3dh0_A 31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDF 109 (219)
T ss_dssp HHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEE
T ss_pred HHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeE
Confidence 33345677899999999999999999885 3489999999 9999999999988876 499999999988766 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|++..+.+.+ .+...+++.+.++|+|||.+++.
T Consensus 110 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 110 IFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEE
Confidence 9985433322 35678899999999999999875
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=128.33 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=89.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|++++...+. +++++++|+.+++++++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~ 96 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELNDKYDIAICH 96 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSSCEEEEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcCCCeeEEEEC
Confidence 4457799999999999999999987 2 2489999999 999999999887665 599999999998877899999995
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.+.. +..+...++..+.++|||||.++.....
T Consensus 97 ~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 97 AFLL---HMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCGG---GCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred Chhh---cCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 5322 2245678999999999999999866544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=129.02 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=86.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+|.+|||||||+|..+..+++.+..+|++||+| .|++.|+++++..+.. ++++.+|..++. ++ ++||.|+.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK--VIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSE--EEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCc--eEEEeehHHhhcccccccCCceEEEee
Confidence 5788999999999999999998866689999999 9999999998877643 899999987653 33 7899999875
Q ss_pred cc--ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MG--YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~--~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+. ..+.+..+...+++.+.|+|||||+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 42 23334446788899999999999999865
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-14 Score=123.35 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=81.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
+.+..... ++.+|||||||+|.++..+ +..+|+++|+| .|++.|+++. .+++++++|+.+++++ ++|
T Consensus 28 ~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~f 96 (211)
T 2gs9_A 28 RALKGLLP--PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESF 96 (211)
T ss_dssp HHHHTTCC--CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCE
T ss_pred HHHHHhcC--CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcE
Confidence 34444432 7789999999999998877 55589999999 9999988775 2389999999988765 689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|++... +.+-.+...++..+.++|||||.+++..
T Consensus 97 D~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 97 DVVLLFTT---LEFVEDVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp EEEEEESC---TTTCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEcCh---hhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99998432 2222357789999999999999988653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-14 Score=121.86 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=87.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
..++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|+++++.+++.++++++++|+.++. .+++||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 356789999999999999999887 34589999999 999999999999988677999999998874 3488999998
Q ss_pred ccccccc-------cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 151 EWMGYFL-------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 ~~~~~~l-------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.. ++. ........++..+.++|+|||.+++.
T Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 100 NLG-YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp EES-BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC-cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 752 211 11123456899999999999998865
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=127.97 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=87.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++...+...+++++++|+.++..+++||+|++..+.+
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFC 143 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTT
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhh
Confidence 3456999999999999999988776 79999999 999999999887666567999999999987668999999854333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+. ......++..+.++|+|||.+++..
T Consensus 144 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 171 (235)
T 3lcc_A 144 AIE-PEMRPAWAKSMYELLKPDGELITLM 171 (235)
T ss_dssp TSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 332 2357888999999999999988643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.46 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=90.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
+.+...+...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|+++.... .+++++++|+.+++++ ++
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCc
Confidence 44555555667889999999999999999987 65 89999999 9999998876554 4599999999998765 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
||+|++..+.+.+. ......++..+.++|||||.+++...
T Consensus 121 fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 121 FDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp EEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999954322221 14678899999999999999987643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=117.77 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=92.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|++++..+++.+ +++++++|+.+...+++|
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCc
Confidence 3444455555788999999999999999998844 89999999 99999999999988865 599999999885445789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+|+++...+. .......+++.+.++|+|||.+++...
T Consensus 121 D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 121 NKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp EEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999653221 123567889999999999999886533
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=122.80 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. .+++++++|+.+++.++
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~ 99 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGR 99 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSS
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCC
Confidence 3344454443 4678999999999999999999877 89999999 9999988764 23899999999887778
Q ss_pred cccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 144 KVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+||+|+|.. ..+.+.....+..+++.+.++|+|||.+++..
T Consensus 100 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999622 22222232456788999999999999998763
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=121.29 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=85.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|++++..+++.+ ++++++|+.++...++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999886 34589999999 99999999999998877 9999999998765578999998532
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+..++..+.++|+|||.+++..
T Consensus 142 -----~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 -----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 235788999999999999988763
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=122.44 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=87.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC-CcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~-~~~D~Ivs 150 (391)
.++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++...++. .+++++.+|+.+++++ ++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 3678999999999999999999977 89999999 9999999998877763 3589999999988765 78999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+.+.+........+++.+.++|+|||.+++..
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 5443333332234478999999999999998753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=118.74 Aligned_cols=99 Identities=30% Similarity=0.361 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.+ ++++++|+.+.. +++||+|+++....
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILAE 136 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcHH
Confidence 4678999999999999999999887799999999 99999999999999877 999999998753 48999999965321
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+..++..+.++|+|||.+++.
T Consensus 137 ------~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 137 ------ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp ------HHHHHGGGSGGGEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHhcCCCCEEEEE
Confidence 2567888999999999998873
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=121.22 Aligned_cols=118 Identities=8% Similarity=0.193 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI 139 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~ 139 (391)
..+...+.......++.+|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++. ++|+++++|+.++
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 334444444433333459999999999999999985 2 3589999999 9999999999999998 7899999998775
Q ss_pred --CC-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 140 --VL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 140 --~~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
.+ +++||+|+++.. ......+++.+.++|+|||++++....+
T Consensus 122 l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 122 MSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp GGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 23 478999998541 1235567888999999999999865543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=117.46 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=85.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~- 142 (391)
...+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|++++..+++.+++ ++++|..+ ++..
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 344444445567789999999999999999887 34589999999 8999999999999988668 88888754 3322
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|++... +.+ ..+++.+.++|+|||.+++..
T Consensus 93 ~~~D~i~~~~~---~~~----~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 93 DNPDVIFIGGG---LTA----PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp SCCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEEEE
T ss_pred CCCCEEEECCc---ccH----HHHHHHHHHhcCCCCEEEEEe
Confidence 78999998442 222 457888889999999988653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=119.54 Aligned_cols=120 Identities=19% Similarity=0.284 Sum_probs=90.3
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHH-HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016320 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL-AIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~l-s~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 136 (391)
+...+..+.+.+.. ..++.+|||+|||+|.+ ...+++.+. +|+|+|+| .|++.|++++..++. +++++++|+
T Consensus 7 ~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~ 80 (209)
T 2p8j_A 7 RQPQLYRFLKYCNE---SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--KLNISKGDI 80 (209)
T ss_dssp SCTHHHHHHHHHHH---SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCT
T ss_pred hhhhHHHHHHHHhc---cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEECch
Confidence 34444455554443 24578999999999987 445556666 89999999 999999999887663 389999999
Q ss_pred ccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 137 EDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+++++ ++||+|++....+++. ......+++.+.++|+|||.+++...
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 81 RKLPFKDESMSFVYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp TSCCSCTTCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhCCCCCCceeEEEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 988765 7899999854323322 24578889999999999999987643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=126.03 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=87.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH---cCCCCcEEEEEcccccCC-------C
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA---NNLQDVVEVIEGSVEDIV-------L 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~-------~ 141 (391)
+...++.+|||+|||+|.+++.+++.. ..+|+|+|++ .+++.|++++.. +++.++++++++|+.++. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 344567899999999999999999885 3489999999 999999999998 888878999999998872 3
Q ss_pred -CCcccEEEEcccccccc----------------CcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 -PEKVDVIISEWMGYFLL----------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivs~~~~~~l~----------------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++||+|++++. |+.. ....+..++..+.++|+|||.+++.
T Consensus 112 ~~~~fD~Vv~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 112 PDEHFHHVIMNPP-YNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp CTTCEEEEEECCC-C---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcCEEEECCC-CcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 378999999863 2221 1123678899999999999998763
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=126.34 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
..+.... .+|.+|||+|||+|.+++.+|+.|+.+|+|+|+| .+++.++++++.|++.++++++++|.+++...+.||
T Consensus 117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D 194 (278)
T 3k6r_A 117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIAD 194 (278)
T ss_dssp HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEE
T ss_pred HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCC
Confidence 3444442 5789999999999999999999998899999999 899999999999999999999999999987668999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.|+++++... ..++....++|++||.+..
T Consensus 195 ~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 195 RILMGYVVRT-------HEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp EEEECCCSSG-------GGGHHHHHHHEEEEEEEEE
T ss_pred EEEECCCCcH-------HHHHHHHHHHcCCCCEEEE
Confidence 9998654322 1345556678999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=122.48 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~Ivs~ 151 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++.+|+.+... +++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 467899999999999999999853 4589999999 9999999999999998789999999987532 5799999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.. ......+++.+.++|+|||++++...
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 31 22356789999999999999987543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=123.77 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=92.7
Q ss_pred hhhhhhhhhhhhhHhhcCChHh----HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016320 41 ANYFCTYAFLYHQKEMLSDRVR----MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 41 ~~y~~~~~~~~~~~~~l~d~~r----~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
..+|+..+..|+.. .+..+ .+...+.+...+. ++.+|||||||+|.++..+++.+. +|+|+|+| .|++.
T Consensus 18 ~~~~~~~a~~Yd~~---~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~ 91 (260)
T 2avn_A 18 WEFYDRIARAYDSM---YETPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEV 91 (260)
T ss_dssp HHHHHHHHHHHGGG---GCSHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred cchhhHHHHHHHHh---ccccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 44555555555442 12222 2333444555443 678999999999999999999876 79999999 99999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 116 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+++.. . .++++|+.+++++ ++||+|++.. +.+.. .....+++.+.++|+|||.+++...
T Consensus 92 a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 92 AREKGV-----K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYV---ENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHTC-----S--CEEECCTTSCCSCTTCEEEEEECSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhcC-----C--CEEECcHHHCCCCCCCEEEEEEcchhhhcc---ccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 987653 1 2788999888765 7899999843 22221 2377889999999999999987543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=119.36 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=89.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-cc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~ 145 (391)
++...+ .++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++++|..+...++ +|
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~ 91 (230)
T 3lec_A 14 KVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI 91 (230)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence 344443 367899999999999999999987 4589999999 999999999999999999999999998866553 79
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|+...|+. ..+..++......|+++|.+|.+.
T Consensus 92 D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 92 DTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 9988633332 236678888888999999888654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=118.33 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=86.9
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
...+.+...+...+ .+..+|||||||+|.+++.++.. ++ +|+|+|+| .|++.+++++..+|..+++++ .|..
T Consensus 34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCH
T ss_pred HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccc
Confidence 34556666666665 34679999999999999999877 55 89999999 999999999999999866777 5555
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
....+++||+|++-.+-+++ . ..+..+..+.+.|+|||++|
T Consensus 109 ~~~~~~~~DvVLa~k~LHlL-~--~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 109 SDVYKGTYDVVFLLKMLPVL-K--QQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp HHHTTSEEEEEEEETCHHHH-H--HTTCCHHHHHHTCEEEEEEE
T ss_pred ccCCCCCcChhhHhhHHHhh-h--hhHHHHHHHHHHhCCCCEEE
Confidence 54556899999985544555 2 22334447788899999887
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=129.81 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCC-----CCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVL-----PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~~D~Iv 149 (391)
.++.+|||+|||+|.+++.+++.|+ +|++||+| .+++.|+++++.+++.+ +++++++|+.++.. .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 3567999999999999999999988 89999999 99999999999999876 59999999987532 36899999
Q ss_pred Ecccccccc-------CcchHHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLL-------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~-------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++..+... .......++..+.++|+|||.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 987433221 1234667888889999999986653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=121.53 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=93.0
Q ss_pred chhhhhhhhhhhhhHhhcC-ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH
Q 016320 40 FANYFCTYAFLYHQKEMLS-DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR 117 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~-d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~ 117 (391)
...+|+..+..|....... ...+.......+...+...++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~ 91 (227)
T 3e8s_A 13 LLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAAR 91 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 3556766555554421111 1222222233344443345678999999999999999999977 79999999 8999888
Q ss_pred HHHHHcCCCCcEEEEEcccccC---CC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 118 TLVKANNLQDVVEVIEGSVEDI---VL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 118 ~~~~~~~~~~~v~~~~~d~~~~---~~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++ ..+.++.+|+.++ .. ..+||+|++....+ ..+...+++.+.++|+|||.+++...
T Consensus 92 ~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 92 AA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL----HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp HT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred Hh-------cccccchhhHHhhcccccccCCCccEEEECchhh----hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 76 2378888888876 22 25699999954322 33567889999999999999987543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=116.90 Aligned_cols=108 Identities=21% Similarity=0.136 Sum_probs=85.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
..+.+.+...++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++++.+++.+ ++++.+|+.+...+ ++|
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCcccCCccCCCc
Confidence 3445555567889999999999999999999865 89999999 99999999999988874 99999999885443 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|+|++......+. +.+.++|+|||++++....
T Consensus 145 D~i~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCC---------THHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhh---------HHHHHhcccCcEEEEEEcC
Confidence 9999954322221 2467889999998876443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=118.77 Aligned_cols=104 Identities=21% Similarity=0.175 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+.-.+ ++||+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 367899999999999999999987 4589999999 99999999999999998999999998653222 36999886433
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+. ..+..++......|+++|.+|.+..
T Consensus 94 Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 94 GG-----RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CH-----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred Ch-----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 22 2357788889999999999886544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=118.86 Aligned_cols=106 Identities=24% Similarity=0.217 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-C-CCcccEEEEc
Q 016320 76 HFQGKTVLDVGTG-SGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-L-PEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcG-~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~~D~Ivs~ 151 (391)
..++.+|||+||| +|.++..+++.+..+|+|+|++ .+++.|+++++.+++ +++++++|+..+. + +++||+|+++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence 3577899999999 9999999999833489999999 999999999999988 4999999975442 2 3789999997
Q ss_pred ccccccc----------------CcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLL----------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~----------------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+..+... .......+++.+.++|+|||.+++.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6322111 1122477899999999999998864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=117.88 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=84.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 155 (391)
++ +|||||||+|.++..+++.|. +|+++|+| .+++.|+++...++. +++++++|+.+++++ ++||+|++.. .
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~- 103 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIF-C- 103 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEEC-C-
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEh-h-
Confidence 45 999999999999999999877 89999999 999999999888776 399999999988765 7899999843 1
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.........++..+.++|+|||.+++..
T Consensus 104 -~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 104 -HLPSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp -CCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred -cCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2233457888999999999999988653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=128.76 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=94.1
Q ss_pred HHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 64 DAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~--~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+.+.+.+...+ ...++.+|||+|||+|.++..+++.++ +|+++|+| .+++.|++++..+++. ++++++|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcc
Confidence 44445554433 234678999999999999999999987 89999999 9999999999999876 899999999876
Q ss_pred CC-CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LP-EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ ++||+|++++.-+... .......++..+.++|+|||.+++.
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 65 7999999976433211 1235678899999999999998865
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=121.02 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=89.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-cc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~ 145 (391)
++...+ .++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+...++ +|
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~ 91 (244)
T 3gnl_A 14 KVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI 91 (244)
T ss_dssp HHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence 344443 467899999999999999999987 4589999999 999999999999999989999999998865554 59
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|++..++. ..+..++......|++++.+|.+.
T Consensus 92 D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 92 DTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 9988633332 246678888889999999888664
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=117.49 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=80.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~D~Ivs~ 151 (391)
++.+|||+|||+|.++..+++.++. |+|+|++ .+++.|++++..+++ +++++++|+.+.. . .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 6789999999999999999999884 9999999 999999999998887 4999999998742 1 2379999997
Q ss_pred cccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016320 152 WMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~~~~ 185 (391)
+... . ....+++.+. ++|+|||.+++...
T Consensus 118 ~~~~-~----~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA-M----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT-S----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc-h----hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 6422 1 2334455555 99999999886543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-14 Score=127.75 Aligned_cols=124 Identities=26% Similarity=0.316 Sum_probs=87.6
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
+|+.++..|... . .....+.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++.
T Consensus 4 ~y~~~a~~y~~~---~--~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~- 76 (261)
T 3ege_A 4 IYNSIGKQYSQT---R--VPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP- 76 (261)
T ss_dssp ---------CCS---B--CCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-
T ss_pred HHHHHHHHHhhc---c--cccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-
Confidence 455555555441 1 11224555566666566789999999999999999998776 89999999 8888766543
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++++++|+.+++++ ++||+|++..+.+.+ .+...+++.+.++|| ||.+++.
T Consensus 77 ------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 77 ------QVEWFTGYAENLALPDKSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp ------TEEEECCCTTSCCSCTTCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEEEE
T ss_pred ------CCEEEECchhhCCCCCCCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEEEE
Confidence 499999999998776 899999995432222 467889999999999 9966544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-13 Score=114.41 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=89.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCCCc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 144 (391)
...+...+...++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.|++++..+++.++++++++|+.+ ++..++
T Consensus 22 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3344444455678899999999999999999988 589999999 9999999999999886669999999887 222268
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++.... ..+..++..+.++|+|||.+++..
T Consensus 101 ~D~v~~~~~~------~~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 101 IDIAVVGGSG------GELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp EEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCEEEECCch------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999985421 135778999999999999988653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=128.48 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=87.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHH-------HHcCCC-CcEEEEEccccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLV-------KANNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~-------~~~~~~-~~v~~~~~d~~~ 138 (391)
.+...+...++.+|||||||+|.+++.+|.. ++.+|+|||++ .+++.|++++ +.+++. .+|+++++|+.+
T Consensus 164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~ 243 (438)
T 3uwp_A 164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 243 (438)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence 3444455678899999999999999988864 77679999999 8999998754 445663 579999999998
Q ss_pred CCCC---CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 139 IVLP---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~~~---~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++++ ..+|+|+++.+. +. ..+...+.++.+.|||||+||....
T Consensus 244 lp~~d~~~~aDVVf~Nn~~---F~-pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 244 EEWRERIANTSVIFVNNFA---FG-PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHHHHTCSEEEECCTT---CC-HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CccccccCCccEEEEcccc---cC-chHHHHHHHHHHcCCCCcEEEEeec
Confidence 7653 479999986532 22 3566777888999999999986533
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=121.20 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
..+.+.+.+...+. .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++. +++++++|+.+.
T Consensus 94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~ 171 (276)
T 2b3t_A 94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA 171 (276)
T ss_dssp THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG
T ss_pred hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh
Confidence 35556666665554 46789999999999999999865 44589999999 9999999999998886 499999999875
Q ss_pred CCCCcccEEEEcccccccc-----------Cc------------chHHHHHHHHhccccCCeEEEccc
Q 016320 140 VLPEKVDVIISEWMGYFLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~-----------~e------------~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+++||+|++++. +... ++ .....++..+.++|+|||.+++..
T Consensus 172 ~~~~~fD~Iv~npP-y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 172 LAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp GTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cccCCccEEEECCC-CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43578999999752 2111 11 235678889999999999998753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=126.44 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=79.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEccc------ccCC--CC-
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSV------EDIV--LP- 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~------~~~~--~~- 142 (391)
++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++....+... .+++.+.|+ .++. ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 468999999999976655566655589999999 99999999887665421 267888887 3321 23
Q ss_pred CcccEEEEccc-cccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 143 EKVDVIISEWM-GYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivs~~~-~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++||+|+|... .+....+ ....+++.+.++|||||++++...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999998543 3333333 457899999999999999987543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=117.48 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~I 148 (391)
...++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.+.+.++.. +++.++.+|+.+. .++++||+|
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEE
Confidence 3457789999999999999988886 33489999999 8887777666553 2489999998774 344789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++.. .......++..+.++|||||.+++.
T Consensus 131 ~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 131 YQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99631 1223445688999999999999876
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=123.11 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=78.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ ++++.+|+.+. +++ ++||+|+|..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~ 109 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISH 109 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence 4568999999999999999999887 69999999 898888764 68899998875 444 8999999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+...+. ...+..++..+.++|||||.+++..
T Consensus 110 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 110 FVEHLD-PERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp CGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred chhhCC-cHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 433332 2256889999999999999988653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=127.93 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=90.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccCCCCC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDIVLPE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~ 143 (391)
+.+.+.+...++.+|||+|||+|.+++.+++.+ ..+|+++|+| .+++.|+++++.+++.+ +++++.+|+.+...++
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 345556666667899999999999999999985 4589999999 99999999999998764 4888999998854447
Q ss_pred cccEEEEccccccc--cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFL--LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l--~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|+|++.-+.. ........++..+.++|+|||.+++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999998643321 11223457899999999999998864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=120.97 Aligned_cols=104 Identities=26% Similarity=0.297 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC------CCcccE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~D~ 147 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++++|+.+... .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 467899999999999999999872 3489999999 9999999999999998889999999976421 157999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|+++.. ......+++.+.++|+|||+++.....
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998642 124567889999999999988876543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=121.08 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-----Cccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-----~~~D 146 (391)
.++.+|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++|+++++|+.+. .++ ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999985 2 3489999999 99999999999999988899999998663 122 5899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+|+++...... .....++..+ ++|+|||++++....
T Consensus 137 ~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99986522111 1223456666 999999999887554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-14 Score=127.98 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=85.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL---------------------------- 125 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~---------------------------- 125 (391)
...++.+|||||||+|.++..+++.++.+|+|+|+| .|++.|++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 345678999999999999999988877689999999 999999988765431
Q ss_pred CCcE-EEEEcccccCCC--C---CcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 126 QDVV-EVIEGSVEDIVL--P---EKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 126 ~~~v-~~~~~d~~~~~~--~---~~~D~Ivs~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..++ +++++|+.+... + ++||+|++....+ ..........++..+.++|||||.+++..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 1127 899999988643 3 6899999854322 21133457788999999999999988764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=121.21 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=90.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+....++
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN 162 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence 34555566678899999999999999999988 4 4589999999 9999999999999998889999999997644478
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|++++. ....++..+.++|+|||.+++.
T Consensus 163 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 163 VDHVILDLP--------QPERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp EEEEEECSS--------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred cCEEEECCC--------CHHHHHHHHHHHcCCCCEEEEE
Confidence 999998542 2235678888999999998864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=124.33 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
.++.+.+.+...+...++.+|||+|||+|.+++.+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+.
T Consensus 107 ~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~- 185 (284)
T 1nv8_A 107 ETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP- 185 (284)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-
T ss_pred hHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-
Confidence 3445555544433223567999999999999999998833489999999 99999999999999988899999999874
Q ss_pred CCCcc---cEEEEcccccccc---------Ccch--------HHHHHHHHh-ccccCCeEEEcccc
Q 016320 141 LPEKV---DVIISEWMGYFLL---------RESM--------FDSVICARD-RWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ~~~~~---D~Ivs~~~~~~l~---------~e~~--------~~~~l~~~~-~~LkpgG~~i~~~~ 185 (391)
++++| |+|+|++. |... ++.. ...+++.+. +.|+|||.+++...
T Consensus 186 ~~~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 186 FKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp GGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 23578 99999852 2211 1111 115678888 99999999986543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=122.28 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=85.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CC--CcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LP--EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~--~~~D~Iv 149 (391)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++|+++.+|+.+. + +. ++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 46789999999999999999987 2 4589999999 99999999999999988899999998763 2 22 4899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++.. ......+++.+.++|||||++++...
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8541 22456788999999999999887644
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=124.23 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. .+++++.+|+.+++++++||+|++..
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~ 125 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAVFSNA 125 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEEEEES
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEEEEcc
Confidence 3445778999999999999999998665 89999999 9999988764 23899999999987778999999854
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+ +-.+...++..+.++|||||.+++.
T Consensus 126 ~l~---~~~d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 126 MLH---WVKEPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp CGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhh---hCcCHHHHHHHHHHhcCCCcEEEEE
Confidence 322 2235678899999999999998864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=121.77 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
.+.+.+... ..++.+|||+|||+|.+++.+++.|+ +|+|+|++ .+++.|++++..+++. ++++++|+.+....+
T Consensus 109 ~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~ 183 (254)
T 2nxc_A 109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFG 183 (254)
T ss_dssp HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGC
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCC
Confidence 344455544 35678999999999999999999988 89999999 9999999999999886 899999988742237
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|+++.+.. .+..++..+.++|+|||.+++.
T Consensus 184 ~fD~Vv~n~~~~------~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 184 PFDLLVANLYAE------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCcHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence 899999965321 3567888999999999998874
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-14 Score=127.42 Aligned_cols=103 Identities=19% Similarity=0.069 Sum_probs=85.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|+++++.+++.++++++++|+.++...++||+|++++..+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 678999999999999999999984 89999999 9999999999999986679999999998875589999999764333
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.. .....+..+.++|+|||.+++..
T Consensus 157 ~~---~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 157 PD---YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp GG---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred cc---hhhhHHHHHHhhcCCcceeHHHH
Confidence 22 22224556789999999866553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-13 Score=118.55 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=83.3
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcc
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKV 145 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 145 (391)
+.+...++.+|||+|||+|.++..+++. |..+|+|+|+| .+++.|+++++.+ +++.++.+|+.+ ..++++|
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCE
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccE
Confidence 3344456789999999999999999987 65689999999 9999999887655 459999999987 5555789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+++. ........++..+.++|+|||.+++.
T Consensus 145 D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999643 12223467789999999999998875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=129.09 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=88.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC-----CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||+|||+|.+++.+|+.|+++|+++|+| .+++.|+++++.|++.+ +++++++|+.++. ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4678999999999999999999888899999999 99999999999999975 6999999997742 125899999
Q ss_pred Eccccccc---cCc---chHHHHHHHHhccccCCeEEEcccce
Q 016320 150 SEWMGYFL---LRE---SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l---~~e---~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++..+.. ... ..+..++..+.++|+|||+++++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98743211 111 23445677788999999999876543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=118.61 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=83.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C--C-CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V--L-PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~-~~~~D~Ivs~ 151 (391)
++.+|||||||+|.++..+|+.. ...|+|||++ .+++.|+++++.+++.+ ++++++|+.++ + + ++++|.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 56799999999999999999874 3479999999 99999999999999876 99999999885 2 3 4899999985
Q ss_pred cccccccCcc-----hHHHHHHHHhccccCCeEEEccc
Q 016320 152 WMGYFLLRES-----MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~l~~e~-----~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.......... ....+++.+.++|||||.+++..
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 3222111110 11358999999999999987653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=119.61 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=84.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
+...+...++.+|||||||+|.++..+++. +. +|+++|+| .|++.|+++. .+++++++|+.++..+++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCccCCcC
Confidence 444455567789999999999999999887 45 79999999 9999998761 24899999999887448899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+|++....+. -.+...++..+.++|+|||.+++..
T Consensus 98 ~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 98 LLYANAVFQW---VPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEEEESCGGG---STTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeCchhh---CCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999543222 2457889999999999999998754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=116.08 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
++.+|||||||+|.++..+++.. ..+|+|+|++ .+++.|++++..+++. +++++++|+.++. ++ ++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 56899999999999999999874 3489999999 9999999999998884 5999999998865 43 7899999864
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~--~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...... ++ .....++..+.++|+|||.+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 321110 00 02357899999999999998764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=129.39 Aligned_cols=105 Identities=26% Similarity=0.377 Sum_probs=85.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHc-----C-CC-CcEEEEEcccccC------C
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKAN-----N-LQ-DVVEVIEGSVEDI------V 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~-----~-~~-~~v~~~~~d~~~~------~ 140 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .+++.|+++++.+ | +. .+++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999999886 23489999999 9999999988765 3 21 4599999999886 5
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++ ++||+|++..+.+. ..+...++..+.++|||||.+++..
T Consensus 162 ~~~~~fD~V~~~~~l~~---~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNL---STNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCTTCEEEEEEESCGGG---CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhc---CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 55 79999999654333 2357889999999999999998764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=120.62 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=86.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-----Cccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-----~~~D 146 (391)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+.. +. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 36789999999999999999987 2 4589999999 999999999999999888999999996642 11 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+|+++.. ......++..+.++|+|||++++....
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9997542 224567888999999999999875443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=111.29 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++ ...+|+++|++ .+++.|+++++.+++. +++++++|+.+ .++ ++|
T Consensus 25 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDKLEF 101 (183)
T ss_dssp HHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccCCCC
Confidence 3344444456778999999999999999998 45589999999 9999999999999884 49999999987 444 689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|++... .....++..+.++ |||.+++..
T Consensus 102 D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 102 NKAFIGGT-------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp SEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred cEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 99999654 3467788888887 999988654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-13 Score=125.67 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=77.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-----------------CCC------------
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-----------------NLQ------------ 126 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-----------------~~~------------ 126 (391)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4678999999999996665655434489999999 9999998865421 100
Q ss_pred CcEEEEEccccc-CCC-----C-CcccEEEEccccccccC-cchHHHHHHHHhccccCCeEEEcc
Q 016320 127 DVVEVIEGSVED-IVL-----P-EKVDVIISEWMGYFLLR-ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 ~~v~~~~~d~~~-~~~-----~-~~~D~Ivs~~~~~~l~~-e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..++++.+|+.+ +++ + ++||+|+|..+.+.+.. ...+..++..+.++|||||.+++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 025678889887 432 1 46999999553333221 235788999999999999999875
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=120.21 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=86.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H------HHHHHHHHHHHcCCCCcEEEEEcc-c--
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K------MSDHARTLVKANNLQDVVEVIEGS-V-- 136 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~------~~~~a~~~~~~~~~~~~v~~~~~d-~-- 136 (391)
.+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| . +++.|+++++.+++.++++++++| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3444445567899999999999999999987 43 589999999 7 899999999988887779999998 3
Q ss_pred ccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 137 EDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..++++ ++||+|++..+.+.. .....+++.+.++++|||.+++..
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 333333 789999985433333 234557777778888899988754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=121.20 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEec-h-HHHHHHHHHH-----HHcCCC----CcEEEE
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-T-KMSDHARTLV-----KANNLQ----DVVEVI 132 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~-s-~~~~~a~~~~-----~~~~~~----~~v~~~ 132 (391)
....+.+.......++++|||||||+|.+++.+++.|+.+|+|+|+ + .+++.|++++ +.+++. ++++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 3444555555444678899999999999999999998778999999 8 8999999999 555554 358888
Q ss_pred Eccccc----CC---CCCcccEEEEccccccccCcchHHHHHHHHhcccc---C--CeEEEc
Q 016320 133 EGSVED----IV---LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLK---P--TGVMYP 182 (391)
Q Consensus 133 ~~d~~~----~~---~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lk---p--gG~~i~ 182 (391)
..+..+ +. ..++||+|++. ..+.+......+++.+.++|+ | ||.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~---dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLA---DLLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEE---SCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EecCCCccHHHHhhccCCCCCEEEEe---CcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 666443 21 24789999972 223334457888999999999 9 997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=123.61 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=84.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC------CCCcEEEEEcccccCC----CC---C
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN------LQDVVEVIEGSVEDIV----LP---E 143 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~----~~---~ 143 (391)
++.+|||||||+|.++..+++.+..+|+++|+| .|++.|+++....+ ...+++++++|+.++. ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 568999999999999999988766689999999 99999999887642 2235999999999875 32 4
Q ss_pred cccEEEEccccccc-cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|+|....+.. ........++..+.++|+|||.+++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999995433322 33345678999999999999999865
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-13 Score=119.97 Aligned_cols=102 Identities=12% Similarity=-0.071 Sum_probs=82.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC------CcccEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP------EKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~D~I 148 (391)
..++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++... .+++++++|+.++..+ ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEE
Confidence 35678899999999999999999988 79999999 999999887621 2499999999886543 248999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++..+.+.+.. .....++..+.++|||||.+++.
T Consensus 129 ~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 129 YMRTGFHHIPV-EKRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp EEESSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEcchhhcCCH-HHHHHHHHHHHHHcCCCCEEEEE
Confidence 99765444432 25778999999999999987654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=121.57 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=74.1
Q ss_pred CCCCEEEEECCcccHHHHHH----HHc-CCCeE--EEEech-HHHHHHHHHHHHc-CCCC-cEEEEEcccccCC------
Q 016320 77 FQGKTVLDVGTGSGILAIWS----AQA-GARKV--YAVEAT-KMSDHARTLVKAN-NLQD-VVEVIEGSVEDIV------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~----a~~-g~~~V--~avD~s-~~~~~a~~~~~~~-~~~~-~v~~~~~d~~~~~------ 140 (391)
.++.+|||||||+|.++..+ +.. ...+| +|+|+| +|++.|++++... ++.+ .+.+..++..++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 35679999999999766432 222 22234 999999 9999999988754 4433 2344566666543
Q ss_pred C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ +++||+|++..+ +.+-.++..++.++.++|||||.+++.
T Consensus 131 ~~~~~fD~V~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 131 KELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TCCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCceeEEEEeee---eeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence 2 378999998433 333346788999999999999998865
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=121.29 Aligned_cols=120 Identities=20% Similarity=0.194 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 61 VRMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
...+.+.+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|++ .+++.|++++..+++ +++++++|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 89 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchH
Confidence 3345555555555443 5778999999999999999999853 389999999 999999999988877 4899999998
Q ss_pred cCCCC-----CcccEEEEccccccccCc------------------------chHHHHHHHHhccccCCeE-EEcc
Q 016320 138 DIVLP-----EKVDVIISEWMGYFLLRE------------------------SMFDSVICARDRWLKPTGV-MYPS 183 (391)
Q Consensus 138 ~~~~~-----~~~D~Ivs~~~~~~l~~e------------------------~~~~~~l~~~~~~LkpgG~-~i~~ 183 (391)
+.... ++||+|++++. +..... .....++..+.++|+|||+ +++.
T Consensus 90 ~~~~~~~~~~~~fD~i~~npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 90 EWLIERAERGRPWHAIVSNPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHHHTTCCBSEEEECCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhhhhhhhccCcccEEEECCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 73222 78999999753 211110 0116778888999999999 5543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=115.17 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=83.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
++.+|||||||+|.++..+|+.. ..+|+|||+| .+++.|++++..+++.+ ++++++|+.++. ++ +.+|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 56799999999999999999873 3489999999 99999999999998865 999999998864 33 7899998743
Q ss_pred cccccc--C---cchHHHHHHHHhccccCCeEEEccc
Q 016320 153 MGYFLL--R---ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~--~---e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
...... + .-....+++.+.++|+|||.+++..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 211110 0 0113678999999999999998653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-13 Score=116.45 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~Ivs~~ 152 (391)
++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++++|..+. + .++ ||+|+++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 56799999999999999999872 3489999999 99999999999988877899999999764 2 236 99999863
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
. ......+++.+.++|+|||+++....
T Consensus 135 ~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D------VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T------TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C------hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 1 12457789999999999999987654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=110.77 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc-cc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE-WM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~-~~ 153 (391)
.++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++.. +++++++|+.+++++ ++||+|++. .+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGNV 117 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCcH
Confidence 4678999999999999999999876 89999999 89999887652 289999999987665 789999995 22
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.. .......++..+.++|+|||.+++.
T Consensus 118 ~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 118 MGFL-AEDGREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhhc-ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2222 2234678899999999999998864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=120.10 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..++.+|||+|||+|.+++.+++. +..+|+|+|++ .+++.|+++++.|++.+ ++++++|+.+++..++||+|++++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHcCccCCceEEEECCc
Confidence 356789999999999999999988 45689999999 99999999999999876 8899999998833468999999764
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ....++..+.+.|+|||++++.
T Consensus 196 ~-------~~~~~l~~~~~~LkpgG~l~~s 218 (272)
T 3a27_A 196 H-------KTHKFLDKTFEFLKDRGVIHYH 218 (272)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred c-------cHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2344677778899999998854
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=121.27 Aligned_cols=109 Identities=20% Similarity=0.090 Sum_probs=86.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-C
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-P 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~ 142 (391)
...+.+.+...++.+|||||||+|.++..+++.+. .+|+++|++ .+++.|+++++.+++.+ ++++.+|+.+... .
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGG
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccC
Confidence 34455555567889999999999999999998753 369999999 99999999999999877 9999999988543 3
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++||+|++..+...+. +.+.++|||||++++...
T Consensus 143 ~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 7899999965432221 356678999999887643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=114.52 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=80.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~I 148 (391)
..++.+|||+|||+|.++..+++. | ..+|+|+|++ .+++.++++++.+ .+++++++|+.+. ..+++||+|
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEE
Confidence 457789999999999999999976 4 2589999999 8999999888765 4599999999873 234689999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++.. .......++..+.++|||||.+++.
T Consensus 148 ~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 148 FEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 98653 2222345588899999999998865
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=119.56 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C------CCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~~ 145 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++|+++.+|+.+. + + .++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 45689999999999999999987 2 3489999999 99999999999999987899999998764 1 2 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+|+++.. ......+++.+.++|+|||++++...
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99998642 12356788899999999999987654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-13 Score=121.25 Aligned_cols=114 Identities=15% Similarity=0.028 Sum_probs=84.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHc---CCCCc--------------
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKAN---NLQDV-------------- 128 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~---~~~~~-------------- 128 (391)
+...+...++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..+ ++.++
T Consensus 43 ~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1o9g_A 43 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 122 (250)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence 333333345679999999999999999886 23489999999 9999999988766 44332
Q ss_pred -----------EE-------------EEEcccccCC------CCCcccEEEEccccccccC------cchHHHHHHHHhc
Q 016320 129 -----------VE-------------VIEGSVEDIV------LPEKVDVIISEWMGYFLLR------ESMFDSVICARDR 172 (391)
Q Consensus 129 -----------v~-------------~~~~d~~~~~------~~~~~D~Ivs~~~~~~l~~------e~~~~~~l~~~~~ 172 (391)
++ ++++|+.+.. ...+||+|+|++....... ......++..+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 56 9999998754 2358999999763221111 1345688899999
Q ss_pred cccCCeEEEcc
Q 016320 173 WLKPTGVMYPS 183 (391)
Q Consensus 173 ~LkpgG~~i~~ 183 (391)
+|+|||++++.
T Consensus 203 ~LkpgG~l~~~ 213 (250)
T 1o9g_A 203 ALPAHAVIAVT 213 (250)
T ss_dssp HSCTTCEEEEE
T ss_pred hcCCCcEEEEe
Confidence 99999998863
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=116.47 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--CCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~--~~~~D~Ivs 150 (391)
.++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + . +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 467899999999999999999873 3589999999 99999999999999877899999999874 2 2 468999998
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+... .....++..+.++|+|||.+++...
T Consensus 133 ~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAK------GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGG------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCH------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 5421 1457789999999999999987644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=122.71 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~D 146 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++|+++++|+.+.. + .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 45689999999999999999986 2 3489999999 999999999999999888999999997742 1 37899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|+++.. ......+++.+.++|+|||++++....+
T Consensus 139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 9998642 2245667889999999999999865543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=122.81 Aligned_cols=119 Identities=22% Similarity=0.183 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+....++.......++.+|||+|||+|.+++.++..+ ..+|+|+|++ .+++.|+++++.+++. +++++++|+.++.
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~ 267 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence 4455566666666778899999999999999999864 2479999999 9999999999999987 6999999999986
Q ss_pred CC-CcccEEEEccccccc--cCc----chHHHHHHHHhccccCCeEEEccc
Q 016320 141 LP-EKVDVIISEWMGYFL--LRE----SMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l--~~e----~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+ +.||+|++++. |.. ... .....+++.+.++|+|||.+++..
T Consensus 268 ~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 268 RFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 55 67899999873 221 111 123678888999999999988653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=126.24 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=89.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCCC-----CCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIVL-----PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~-----~~~~D~Iv 149 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|+++++.|++ .++++++++|+.++.. .++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999999999988799999999 999999999999998 6569999999987532 36899999
Q ss_pred Eccccccc------cCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 150 SEWMGYFL------LRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l------~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++..+.. ........++..+.++|+|||+++.+.+.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98743211 11134667788888999999998876543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=113.78 Aligned_cols=107 Identities=24% Similarity=0.236 Sum_probs=83.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCC
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPE 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~ 143 (391)
....+...+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.|+++...++ +++++.+|+.+. ...+
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCC
Confidence 34445555556678899999999999999999987 589999999 99999999987766 499999999873 2237
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|++....+.+ .+.+.++|+|||.+++...
T Consensus 134 ~fD~v~~~~~~~~~---------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 134 PYDRVVVWATAPTL---------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CEEEEEESSBBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHH---------HHHHHHHcCCCcEEEEEEc
Confidence 89999985432221 1356789999999886543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=114.26 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCccc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D 146 (391)
+...++.+|||+|||+|.++..+++. | ..+|+|+|+| .+++.+.++++.+ .+++++++|+.+.. ..++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 34456789999999999999999987 3 3589999999 8888888888776 34999999998742 237899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+++.. .......++..+.++|||||.+++.
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999653 1223355678889999999998874
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=112.29 Aligned_cols=98 Identities=22% Similarity=0.249 Sum_probs=79.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.|+.+|+|+|++ .+++.|+++++.+++ +++++++|+.+++ ++||+|++++.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p- 121 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPP- 121 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCC-
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCC-
Confidence 45678999999999999999999987789999999 999999999988887 4999999999864 68999999874
Q ss_pred ccccCcchHHHHHHHHhccccCCeEE
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~ 180 (391)
+..........+++.+.++| |+.+
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcEE
Confidence 22222233456677777777 5544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=126.66 Aligned_cols=109 Identities=26% Similarity=0.323 Sum_probs=89.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~Ivs~ 151 (391)
++.+|||+|||+|.+++.+++.|+++|+|+|++ .+++.|+++++.|++.++++++++|+.++.. .++||+|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 678999999999999999999888899999999 9999999999999987679999999977531 3689999998
Q ss_pred cccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016320 152 WMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~l~~e------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+..+..... .....++..+.++|+|||.++...++
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 743221111 23566788889999999998876543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=122.84 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=86.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHH-------HHHHHHcCCC-CcEEEEEccc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHA-------RTLVKANNLQ-DVVEVIEGSV 136 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a-------~~~~~~~~~~-~~v~~~~~d~ 136 (391)
...+.+.+...++.+|||||||+|.++..+|+. +..+|+|||++ .+++.| +++++..++. .+++++++|.
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 344555556678899999999999999999986 66689999999 888888 8888888853 4599998754
Q ss_pred ccC--C---CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 137 EDI--V---LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~--~---~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
... . ..++||+|+++.. +.. ..+..++.++.+.|||||.++...
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~---l~~-~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNF---LFD-EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---TCC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccccccccCCCCEEEEeCc---ccc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence 321 1 1368999998432 222 356777899999999999988653
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=116.24 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCC--CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 63 MDAYFNSIFQNKHH--FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
+..+...+...+.. .++.+|||+|||+|.++..+++. ...+|+|+|++ .|++.|+++++.+++.++++++++|+.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence 34444444443322 25679999999999999888876 23489999999 9999999999999998889999999776
Q ss_pred C---CCC----CcccEEEEccccccccCc------------chHHHHHHHHhccccCCeEEEcc
Q 016320 139 I---VLP----EKVDVIISEWMGYFLLRE------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~---~~~----~~~D~Ivs~~~~~~l~~e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. .++ ++||+|+|++.-+....+ .....++..+.++|||||.+.+.
T Consensus 128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 233 479999998642221100 01124567788999999987654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=111.46 Aligned_cols=108 Identities=21% Similarity=0.160 Sum_probs=83.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++.+ . .+|+++|++ .+++.|++++...++.+ ++++.+|+..... .+
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGGGC
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCCCC
Confidence 344455556678899999999999999999875 2 589999999 99999999998888765 9999999865332 37
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+||+|++......+ .+.+.++|+|||.+++...
T Consensus 146 ~fD~v~~~~~~~~~---------~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKI---------PEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHH---------HHHHHHHcCCCcEEEEEEC
Confidence 89999985432221 1366789999999886533
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=133.77 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC-C-CCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI-V-LPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~-~~~~~D~Ivs~~ 152 (391)
.++++|||+|||+|.+++.+++.|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++ . ..++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 3688999999999999999999999889999999 9999999999999997 5799999999874 2 237899999987
Q ss_pred cccc--------ccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 153 MGYF--------LLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~--------l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
..+. .........++..+.++|+|||+++++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4322 111234667788889999999999866443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=118.90 Aligned_cols=112 Identities=15% Similarity=0.053 Sum_probs=89.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCccc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D 146 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++. +++++++|+.++.. .++||
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCC
Confidence 3467889999999999999998884 44689999999 9999999999999986 49999999988643 47899
Q ss_pred EEEEcccccccc---------------CcchHHHHHHHHhccccCCeEEEccccee
Q 016320 147 VIISEWMGYFLL---------------RESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivs~~~~~~l~---------------~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+|++++...... .......+++.+.++|||||.++...++.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 999975322211 00234678898999999999999876654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=114.68 Aligned_cols=108 Identities=26% Similarity=0.238 Sum_probs=87.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCCC-
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~- 142 (391)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+ + .++++++++|+.+.+++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence 34555555678899999999999999999988 4 4589999999 9999999999887 7 44599999999987555
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|++++. ....++..+.++|+|||.+++..
T Consensus 165 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 165 AAYDGVALDLM--------EPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 68999998531 23356888889999999988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-13 Score=112.41 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
..++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++ ..+++++.+| .+++ ++||+|++..+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFANS 84 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEccc
Confidence 35678999999999999999999876 89999999 899998887 2348999999 3333 78999998543
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+ .....+++.+.++|+|||.+++.
T Consensus 85 l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 85 FHDM---DDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp STTC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcc---cCHHHHHHHHHHhcCCCCEEEEE
Confidence 2222 35678899999999999999875
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=116.23 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=74.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCC--CCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVL--PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++.++ +|+|+|+| .+++.|+++ . .+++++++|+. .+++ .++||+|+|..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 4678999999999999999999976 89999999 999999887 1 24899999994 4544 37899999851
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
....++..+.++|||||.++
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCcEEE
Confidence 23456778889999999998
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=116.42 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=86.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC------CCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~ 145 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++|+++.+|..+. .+ .++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 45689999999999999999987 2 3589999999 99999999999999987899999998764 12 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|+|+++.. ......+++.+.++|+|||+++.....
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99998631 124567888899999999999876543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=122.53 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=89.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
.+.+.+.+...++.+|||+|||+|.++..+++.+. .+|+++|+| .+++.|++++..+++. ++++.+|+.+.. +++
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~ 261 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KGR 261 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CSC
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cCC
Confidence 34455555444567899999999999999999864 389999999 9999999999998876 677899987754 579
Q ss_pred ccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|++++..+... .......++..+.++|+|||.+++.
T Consensus 262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999976432211 1234678899999999999998864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-12 Score=117.10 Aligned_cols=109 Identities=21% Similarity=0.165 Sum_probs=88.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+....++|
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 182 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV 182 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSE
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCcc
Confidence 4444555677899999999999999999987 5 4589999999 99999999999988866799999999887323689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+|++++. ....++..+.++|+|||.+++...
T Consensus 183 D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 183 DALFLDVP--------DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp EEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred CEEEECCc--------CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99998542 223567788899999999886543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-12 Score=113.30 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D 146 (391)
.+...+...++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|+++.+.+++.++++++.+|+.+.. ..++||
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 160 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH 160 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence 3444455567899999999999999999988 4589999999 999999999999888667999999998865 347899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|++++. ....+++.+.++|+|||.+++...
T Consensus 161 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 161 AAFVDVR--------EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp EEEECSS--------CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred EEEECCc--------CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9998542 223567778899999999886543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-12 Score=118.43 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.. ..+++++|++.+++.|++++...++.++++++.+|+.+.++++.||+|++..+.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~ 243 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLH 243 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhc
Confidence 567899999999999999998872 3489999999889999999998888878999999998877666799999844333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.+. ......+++.+.++|+|||.+++..
T Consensus 244 ~~~-~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 244 HFD-VATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 322 2245688999999999999887654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-13 Score=130.75 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=98.1
Q ss_pred CCCCCCccccccccchhhhh-hhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeE
Q 016320 26 GRGGGTATVDKEVDFANYFC-TYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKV 104 (391)
Q Consensus 26 ~~~g~~~~~~~~~~~~~y~~-~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V 104 (391)
|..|+........+.+.+|. .|.+.......+. .....+.+.+...+...++.+|||||||+|.++..+++.|. +|
T Consensus 56 C~~Cg~v~~~~~~~~~~~y~~~y~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v 132 (416)
T 4e2x_A 56 CDSCEMVQLTEEVPRDLMFHEVYPYHSSGSSVMR--EHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RH 132 (416)
T ss_dssp ETTTCCEEESSCCCHHHHSSTTCCCCGGGCHHHH--HHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EE
T ss_pred CCCCCceeecCcCCHHHhccCCccCcCcCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cE
Confidence 44566666555555555664 4443332211121 12334555566666666788999999999999999999987 89
Q ss_pred EEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 105 YAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+|+|+| .|++.|+++ ++..... +...+...++++ ++||+|++..+ +.+-.++..+++.+.++|||||+++
T Consensus 133 ~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 133 LGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT---LCHIPYVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp EEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC---GGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred EEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh---HHhcCCHHHHHHHHHHHcCCCeEEE
Confidence 999999 899888765 3322111 222334444433 78999999443 2222467889999999999999998
Q ss_pred cc
Q 016320 182 PS 183 (391)
Q Consensus 182 ~~ 183 (391)
+.
T Consensus 206 i~ 207 (416)
T 4e2x_A 206 FE 207 (416)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=115.67 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C----------
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~---------- 141 (391)
.++.+|||||||+|.++..+++.. ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 467899999999999999999873 4589999999 99999999999999887899999998763 1 1
Q ss_pred -----C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 142 -----P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 -----~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+ ++||+|+++.. ......++..+.++|+|||+++...
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 68999998531 2245678899999999999998754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=112.44 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=85.6
Q ss_pred HHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 65 AYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 65 ~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
++..+|..- +...+|.+|||+|||+|.++..+|+. |. .+|+|+|++ .|++.+++++++.+ ++..+.+|...
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~ 137 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARF 137 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTC
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccC
Confidence 445566543 45678999999999999999999987 53 589999999 99999988776542 48888888876
Q ss_pred CC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 139 IV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. ..+.+|+|+++.. .. .....++..+.+.|||||.+++.
T Consensus 138 p~~~~~~~~~vDvVf~d~~----~~-~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVA----QP-EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GGGGTTTCCCEEEEEECCC----CT-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccceEEEEEEecc----CC-hhHHHHHHHHHHhccCCCEEEEE
Confidence 42 2278999998542 11 24567888999999999998764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=114.55 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-----Cccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-----~~~D 146 (391)
.++.+|||||||+|.+++.+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+. .++ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 46789999999999999999986 2 4589999999 99999999999999877899999998664 111 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|+++.. ......+++.+.++|+|||++++...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998652 22356778889999999999987643
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=116.48 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCCCCc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~ 144 (391)
.+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+ +.. +++++++|+.+...+++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG-NVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT-TEEEECSCTTTCCCSCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC-cEEEEECchhccCcCCC
Confidence 4444555667889999999999999999987 23489999999 9999999999888 754 49999999988433378
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
||+|++++. ....+++.+.++|+|||.+++...
T Consensus 180 fD~Vi~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 180 YDAVIADIP--------DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ccEEEEcCc--------CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999998431 234678888999999999886543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=108.75 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=78.7
Q ss_pred HHHHHhcC---CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 67 FNSIFQNK---HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 67 ~~~i~~~~---~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
...+...+ ...++.+|||+|||+|.++..+++. + ..+|+|+|++ .|++.+.+.++.. .++.++.+|++...
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~ 138 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQ 138 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGG
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccch
Confidence 34444443 3568899999999999999999886 3 4489999999 8876655555443 24999999987642
Q ss_pred ----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 ----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ----~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.++||+|+++... ......+...+.++|||||.+++.
T Consensus 139 ~~~~~~~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp GTTTTCCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhccccceEEEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 23789999997521 122334455566799999999876
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=128.80 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHc------CCCCcEEEEEcc
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKAN------NLQDVVEVIEGS 135 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~------~~~~~v~~~~~d 135 (391)
...+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|||+| .|++.|++++... ++. +++++++|
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGD 786 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGS 786 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESC
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECc
Confidence 3344444444345788999999999999999999873 489999999 9999999876532 443 59999999
Q ss_pred cccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 136 VEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+++.+ ++||+|++..+-.++.. .....++..+.++|||| .+++.
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEE
T ss_pred hHhCCcccCCeeEEEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEE
Confidence 9998776 89999999433232222 23456889999999999 55544
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=121.23 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=83.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~~ 154 (391)
++++|||+|||+|.+++.+++.|+. |+++|+| .+++.|+++++.|++.+ ++.++|+.++. .++.||+|++++..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 5899999999999999999999986 9999999 99999999999999874 56699988752 23459999998743
Q ss_pred ccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016320 155 YFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~l~~e------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+..... .....++..+.++|+|||.++...++
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 221111 23456778888999999999855443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=114.71 Aligned_cols=109 Identities=28% Similarity=0.358 Sum_probs=87.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc-C-CCCcEEEEEcccccCCCC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN-N-LQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~ 142 (391)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+ + +.++++++++|+.+..++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 34555555677889999999999999999985 3 4589999999 9999999999887 4 445699999999987654
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|+++.. ....++..+.++|+|||.+++..
T Consensus 169 ~~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 169 DGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp TTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 78999998542 22356888889999999988654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-12 Score=120.54 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=83.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+| .+++.|+++++.|++.++++++++|+.++. ++||+|++++..+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 4678999999999999999 87 67799999999 999999999999999777999999999876 7899999976432
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
. ..++..+.++|+|||.++....
T Consensus 270 ~-------~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 270 A-------HKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp G-------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred H-------HHHHHHHHHHcCCCCEEEEEEe
Confidence 2 1467777889999998876543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-12 Score=117.85 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ ++++++|+.++.. +++||+|++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhcccccccCCEEEE
Confidence 4567889999999999999999886 23589999999 99999999999999865 9999999988753 478999999
Q ss_pred ccccccc--c-Ccc----------------hHHHHHHHHhccccCCeEEEccccee
Q 016320 151 EWMGYFL--L-RES----------------MFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 151 ~~~~~~l--~-~e~----------------~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++..+.. . ... ....+++.+.++|||||.++...+++
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 7532211 0 000 12478888999999999998866554
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=117.89 Aligned_cols=106 Identities=23% Similarity=0.282 Sum_probs=80.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHc-------CC---CCcEEEEEccc
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKAN-------NL---QDVVEVIEGSV 136 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~-------~~---~~~v~~~~~d~ 136 (391)
+...+...++.+|||+|||+|.++..+++. |+ .+|+++|++ .+++.|++++... ++ ..+++++++|+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~ 176 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence 334445578899999999999999999987 65 689999999 9999999998853 22 34699999999
Q ss_pred ccC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 EDI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~--~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+. .++ ++||+|+++.... ..++..+.++|+|||.++..
T Consensus 177 ~~~~~~~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv~~ 218 (336)
T 2b25_A 177 SGATEDIKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCAVY 218 (336)
T ss_dssp TCCC-------EEEEEECSSST--------TTTHHHHGGGEEEEEEEEEE
T ss_pred HHcccccCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence 886 333 5799999864321 22678889999999998843
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-12 Score=112.45 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=78.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH------cCCCCcEEEEEccccc-CC--CC-Cc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA------NNLQDVVEVIEGSVED-IV--LP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~~-~~ 144 (391)
.++.+|||||||+|.++..+|+.. ...|+|||+| .|++.|+++++. .++. +|+++++|+.+ ++ ++ ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCCCcC
Confidence 356789999999999999999873 3489999999 999999988764 4454 49999999987 44 43 78
Q ss_pred ccEEEEcccccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~--~e---~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|.|++........ +. -....++..+.++|+|||.+++.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99998632211110 00 01246899999999999998865
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.39 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=91.6
Q ss_pred HHhcCCCCC-CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcc
Q 016320 70 IFQNKHHFQ-GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKV 145 (391)
Q Consensus 70 i~~~~~~~~-~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 145 (391)
+...+...+ +.+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++++++.+|+.+.. .++.|
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 249 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAA 249 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCE
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCc
Confidence 344444445 7899999999999999998873 3489999998889999999999888888999999999876 67789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|++..+.+.+.. .....+++.+.+.|+|||.+++..
T Consensus 250 D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 250 DVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp EEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99998544333322 235788999999999999988654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-11 Score=115.03 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+.......+..+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.+..||+
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~~D~ 271 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFE-TIPDGADV 271 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSSCSE
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCCceE
Confidence 34444555567899999999999999998873 33899999977899999999999988889999999983 44558999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++..+.+.+.. .....+++.+.+.|+|||.+++...
T Consensus 272 v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 272 YLIKHVLHDWDD-DDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EEhhhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998543333322 2234789999999999999886543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-12 Score=122.71 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~Ivs~ 151 (391)
++.+|||+|||+|.+++.+++. +.+|+++|+| .+++.|+++++.|++.+ ++++++|+.++.. .++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999988 6689999999 99999999999999987 9999999987532 4689999998
Q ss_pred cccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016320 152 WMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~l~~e------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+..+..... .....++..+.++|+|||.++...++
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 743322111 23456788889999999998876543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=114.50 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CC-C--Cccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VL-P--EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~-~--~~~D 146 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. .. . ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 356799999999999999999862 3489999999 99999999999999887899999997653 11 1 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+|+++.. ......+++.+.++|+|||++++....
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9998642 124567889999999999999876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=108.00 Aligned_cols=101 Identities=26% Similarity=0.274 Sum_probs=79.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCC-CCcccE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVL-PEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~D~ 147 (391)
..++.+|||+|||+|.++..+++. +. .+|+++|++ .+++.|++++..+++ .++++++++|+..... .++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 456789999999999999999887 43 389999999 999999999988664 3459999999986543 368999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++..... .+++.+.++|||||.+++...
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEEES
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEEEe
Confidence 99854221 123566789999999887543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=116.61 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=88.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.+.+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++..+++.++|+++.+|+.+ .++..||+|
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v 252 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADVV 252 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEEE
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCCCEE
Confidence 3344444567899999999999999999874 34899999977899999999999988789999999976 445569999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++..+.+.+.. .....+++.+.++|+|||.+++...
T Consensus 253 ~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 98544333222 2235789999999999998886544
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=110.82 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=80.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--Ccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~ 145 (391)
.+.+.+...++.+|||||||+|.++..+++.+..+|+++|++ .+++.|+++++.+++.+ ++++.+|... .++ .+|
T Consensus 82 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~~~~~~f 159 (235)
T 1jg1_A 82 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK-GFPPKAPY 159 (235)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG-CCGGGCCE
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCccc-CCCCCCCc
Confidence 344444556778999999999999999998752589999999 99999999999988876 9999999732 333 469
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+|++......+ .+.+.+.|+|||.+++...
T Consensus 160 D~Ii~~~~~~~~---------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 160 DVIIVTAGAPKI---------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEEEECSBBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred cEEEECCcHHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 999985422111 2356788999999876543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=118.54 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~~ 154 (391)
...+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+.. +|+.||+|++..+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vl 258 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFL 258 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechh
Confidence 55899999999999999998863 3489999998899999999988888778999999999863 56889999985443
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+.+.. .....+++.+.+.|+|||.+++..
T Consensus 259 h~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 259 DCFSE-EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp TTSCH-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 33322 245678999999999999987654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-12 Score=117.79 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=75.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE-EcccccCC---
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI-EGSVEDIV--- 140 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~--- 140 (391)
...++.......++.+|||||||||.++..+++.|+.+|+|||+| .|++.+.+. + .++..+ ..+++.+.
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~~ 146 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPVD 146 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGGG
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchhh
Confidence 344454443345678999999999999999999998899999999 999875432 1 124333 34555543
Q ss_pred CCC-cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPE-KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~-~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++. .||+|+++.... .+..++.++.++|+|||.+++.
T Consensus 147 l~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 147 FTEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CTTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEEE
Confidence 343 499999965321 2466788999999999998763
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=116.91 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=84.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC--CC-CCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI--VL-PEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~-~~~~D~I 148 (391)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++... ++ ..+++++.+|+.++ .. .++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 35689999999999999999987 34589999999 9999999987652 44 34699999998774 22 3789999
Q ss_pred EEccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016320 149 ISEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 149 vs~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++........+. ....+++.+.++|+|||+++.....
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9976432221121 1367899999999999999976443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=115.36 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH---cCCCCcEEEEEcccccCC---CCCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA---NNLQDVVEVIEGSVEDIV---LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~---~~~~~D~I 148 (391)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. .....+++++.+|+.++. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 45689999999999999999987 45689999999 999999987632 222346999999998753 24789999
Q ss_pred EEccccccccCcch-HHHHHHHHhccccCCeEEEccc
Q 016320 149 ISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vs~~~~~~l~~e~~-~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++........... ...+++.+.++|+|||+++...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99764433211111 1578899999999999998753
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=112.76 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHH-----------------------cC
Q 016320 78 QGKTVLDVGTGSGI----LAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKA-----------------------NN 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~----ls~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~-----------------------~~ 124 (391)
++.+|||+|||||. +++.+++. + ..+|+|+|+| .|++.|++.+.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45789999999998 67777765 3 1279999999 999999986410 01
Q ss_pred -------CCCcEEEEEcccccCCCC--CcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 125 -------LQDVVEVIEGSVEDIVLP--EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 125 -------~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~-~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.++|+|.++|+.+.+++ ++||+|+|.. +.|+ . ......++..+.+.|+|||.+++...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~-~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-D-KTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-C-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-C-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 113599999999885443 7899999943 3333 2 23457889999999999999987533
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-12 Score=114.39 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=76.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH----HHcCCCCcEEEEEcccccCCCC-CcccEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV----KANNLQDVVEVIEGSVEDIVLP-EKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~-~~~D~I 148 (391)
..++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.+.+.+ ...++. +++++++|+.+++++ +. |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCC-CEE
Confidence 3567899999999999999999984 3489999999 8887543333 345554 499999999998776 34 777
Q ss_pred EEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~--~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+......... +-.+...++..+.++|||||.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6422111110 1112367899999999999999873
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=117.07 Aligned_cols=107 Identities=18% Similarity=0.130 Sum_probs=81.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CC--------CCcEEEEEcccccCC-CCCc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NL--------QDVVEVIEGSVEDIV-LPEK 144 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~-~~~~ 144 (391)
.++++|||||||+|.++..+++.+..+|++||++ .+++.|++++ .. ++ ..+++++.+|..+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 3568999999999999999998876799999999 9999999987 33 32 356999999986641 1578
Q ss_pred ccEEEEccccccccCcch-HHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~-~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|+++........... ...+++.+.++|+|||+++...
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999765322111111 2677889999999999998763
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=108.95 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC------CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCC----
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~---- 140 (391)
..++.+|||||||+|.++..+++... .+|+++|++ .+++.|+++++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 45678999999999999999998743 489999999 999999999988873 345999999998753
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.. ++||+|++...... +++.+.++|+|||++++..
T Consensus 158 ~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 158 KELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEE
Confidence 22 78999998543221 2356678899999988653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=110.67 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=79.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHc--------CCCCcEEEEEccccc-CC--CC-
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKAN--------NLQDVVEVIEGSVED-IV--LP- 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~--~~- 142 (391)
.++.+|||||||+|.+++.+++.++ .+|+|||+| .+++.|+++++.+ ++.+ ++++.+|+.+ +. ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhccc
Confidence 3567999999999999999999864 389999999 9999999998876 6654 9999999987 43 33
Q ss_pred CcccEEEEcccccccc-----CcchHHHHHHHHhccccCCeEEEc
Q 016320 143 EKVDVIISEWMGYFLL-----RESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~-----~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+.+|.|+......... .......++..+.++|+|||.+++
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 6889887532111100 000114788899999999999887
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=114.01 Aligned_cols=106 Identities=19% Similarity=0.050 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.|..||+|++..+.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~v~~~~vlh~ 247 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGGYVLSAVLHD 247 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSEEEEESCGGG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcEEEEehhhcc
Confidence 45899999999999999998863 34799999988999999999999988889999999973 44558999998543333
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+.. .....+++.+++.|+|||.+++...
T Consensus 248 ~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 248 WDD-LSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp SCH-HHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCH-HHHHHHHHHHHHhcCCCCEEEEEee
Confidence 322 2357889999999999999987543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=113.46 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=90.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+.+.+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|+++++.+++.++++++.+|+.+.++++ .|+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~ 259 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADA 259 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSE
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCE
Confidence 34444445567899999999999999999873 3489999997789999999999988888999999999876553 499
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|++..+.+.+.. .....+++.+.+.|+|||.+++..
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 998543333222 236788999999999999987643
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-12 Score=109.18 Aligned_cols=90 Identities=26% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++. +++++++|+.+++ ++||+|++++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~ 120 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPF 120 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCc
Confidence 45678999999999999999999887789999999 99999998765 3899999999864 789999998743
Q ss_pred ccccCcchHHHHHHHHhccc
Q 016320 155 YFLLRESMFDSVICARDRWL 174 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~L 174 (391)
+.... .....+++.+.+.|
T Consensus 121 ~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 121 GSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp --------CHHHHHHHHHHE
T ss_pred hhccC-chhHHHHHHHHHhc
Confidence 33322 22345677777776
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=108.92 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=78.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-Ccc
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~ 145 (391)
+.+.+. .++.+|||+|||+|.++..+++.| .+|+++|++ .+++.++++. .+++.+|+.+. +++ ++|
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCE
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCcc
Confidence 444443 567899999999999999999886 589999999 8888877543 37888998873 333 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|++..+ +.+..+...++..+.++|+|||.+++.
T Consensus 95 D~v~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 95 DCVIFGDV---LEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp EEEEEESC---GGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred CEEEECCh---hhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99998432 222234578899999999999999875
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=108.86 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=77.4
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 144 (391)
...+.... ++.+|||||||+|.++..+++. +++|++ .+++.|+++ +++++.+|+.+++++ ++
T Consensus 39 ~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~ 102 (219)
T 1vlm_A 39 LQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDES 102 (219)
T ss_dssp HHHHHHHC---CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTC
T ss_pred HHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCC
Confidence 34454443 3789999999999999887654 999999 899888875 289999999888765 68
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++..+.+. -.....++..+.++|+|||.+++..
T Consensus 103 fD~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 103 FDFALMVTTICF---VDDPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp EEEEEEESCGGG---SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEcchHhh---ccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998543222 2356788999999999999988753
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-11 Score=110.20 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=81.6
Q ss_pred CCCEEEEECCcc---cHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016320 78 QGKTVLDVGTGS---GILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 78 ~~~~VLDlGcG~---G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
...+|||||||+ |.++..+++.. ..+|+++|+| .|++.|++++.. .++++++++|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 347999999999 99887776652 3489999999 999999998743 245999999997631 2
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+ .+||+|++..+.+++..+ ....+++.+.++|+|||.+++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 2 589999997655555444 578899999999999999987653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-12 Score=118.15 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccCC--CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ ..+++++.+|..+.. .+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 5689999999999999999987 45689999999 999999998765 233 356999999987642 3478999999
Q ss_pred ccccccccCcchH-HHHHHHHhccccCCeEEEccc
Q 016320 151 EWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 ~~~~~~l~~e~~~-~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+............ ..+++.+.++|+|||+++...
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 7643221111111 678899999999999998763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=113.50 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~-~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. +++ .++++++.+|..+. . .+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5689999999999999999988 66799999999 999999998754 234 35699999998764 2 2478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++......... ....+++.+.++|+|||+++....
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 77543221111 125678899999999999987643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-11 Score=114.11 Aligned_cols=113 Identities=26% Similarity=0.292 Sum_probs=87.7
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
.+.+...++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++++..+++.++++++.+|+.+ .++..||+|+
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~ 254 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKADAII 254 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCEEEEE
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCccEEE
Confidence 334444567899999999999999998874 33799999877899999999999888789999999976 3455699999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+..+.+.+. ......+++.+.++|+|||.+++...
T Consensus 255 ~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 255 LSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EcccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 854333222 12235789999999999999886543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=113.19 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=71.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.+.|.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.|++++..++..++++++++|+.+++++ .|
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~f 94 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FF 94 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CC
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hh
Confidence 34455555566788999999999999999999876 89999999 99999999987776655699999999987765 89
Q ss_pred cEEEEccc
Q 016320 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivs~~~ 153 (391)
|+|++++.
T Consensus 95 D~vv~nlp 102 (285)
T 1zq9_A 95 DTCVANLP 102 (285)
T ss_dssp SEEEEECC
T ss_pred cEEEEecC
Confidence 99999763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-12 Score=113.82 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=73.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-H-HHHHH---HHHHHHcCCCCcEEEEEcccccCCCC--CcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-K-MSDHA---RTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~-~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~I 148 (391)
.++.+|||||||+|.++..+++. ...+|+|||+| + |++.| ++++...++.+ ++++++|+++++.. ..+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhhccCeEEEE
Confidence 46789999999999999999865 23379999999 5 55555 77777777765 99999999988421 334444
Q ss_pred EEccccccc--cCcchHHHHHHHHhccccCCeEEEc
Q 016320 149 ISEWMGYFL--LRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vs~~~~~~l--~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+....... ........++.++.++|||||.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 432210000 0001124678999999999999887
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=113.42 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=81.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~-~~~~~D~Ivs 150 (391)
++.+|||||||+|.++..+++. +..+|++||++ .+++.|++++.. +++ .++++++.+|+.+. . .+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999987 56799999999 999999998754 333 34699999998764 2 2478999999
Q ss_pred ccccc-cccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGY-FLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~-~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++... ...... ....+++.+.++|+|||+++....
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 76432 111110 125788899999999999987643
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.5e-11 Score=113.40 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+...+...+ .+|||+|||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.+++||+|
T Consensus 160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v 237 (334)
T 2ip2_A 160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDIY 237 (334)
T ss_dssp HHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSEE
T ss_pred HHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCEE
Confidence 334443344 899999999999999998873 34899999976889999988877777779999999987 556789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++..+.+.+. ......+++.+.+.|+|||.+++...
T Consensus 238 ~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 238 LLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp EEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9854333222 22345889999999999999887643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=114.04 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=81.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~-~~~~~D~Iv 149 (391)
.++++|||||||+|.++..+++.+ ..+|++||++ .+++.|++++.. +++ .++++++.+|..+. . .+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999999999873 5689999999 999999998765 344 45699999998763 2 247899999
Q ss_pred EccccccccCc-chHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e-~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++........+ .....+++.+.++|+|||+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 97643221111 112467888999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=117.10 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
.....+.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|++ .|++.|+++++.+++.++++++++|+.+++.+
T Consensus 205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY 283 (373)
T ss_dssp HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence 3444444444 56778999999999999999999865 379999999 99999999999999977799999999998765
Q ss_pred -CcccEEEEccccc-cccCc----chHHHHHHHHhccc
Q 016320 143 -EKVDVIISEWMGY-FLLRE----SMFDSVICARDRWL 174 (391)
Q Consensus 143 -~~~D~Ivs~~~~~-~l~~e----~~~~~~l~~~~~~L 174 (391)
++||+|++++.-. .+... .....+++.+.++|
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 7899999986311 11111 12356777888888
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=105.71 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.++..+++.+ +|+|+|+| .|++. .++++++++|+.+...+++||+|++++.-+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 466799999999999999999988 89999999 88776 234899999998843338999999976422
Q ss_pred cccC------cchHHHHHHHHhccccCCeEEEcc
Q 016320 156 FLLR------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~l~~------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.... ......++..+.+.| |||.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~ 122 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLL 122 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEE
Confidence 1111 111234566666666 99998764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-12 Score=117.02 Aligned_cols=108 Identities=21% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~-~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++... ++ .++++++.+|+.+. . .+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4589999999999999999987 35689999999 9999999987653 33 45699999998774 2 2478999999
Q ss_pred ccccccccCcchH-HHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l~~e~~~-~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+............ ..+++.+.++|+|||+++....
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 7743322122111 6788899999999999987653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=115.27 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=82.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCC--CCcccEEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVL--PEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~~D~Ivs 150 (391)
..++++|||+| |+|.+++.+++.++ .+|+++|++ .|++.|+++++.+++. +|+++++|+.+ ++. .++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34678999999 99999999998876 689999999 9999999999999986 59999999988 543 358999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeE
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
++... .. ....++..+.++|+|||.
T Consensus 248 ~~p~~-~~---~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 248 DPPET-LE---AIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp CCCSS-HH---HHHHHHHHHHHTBCSTTC
T ss_pred CCCCc-hH---HHHHHHHHHHHHcccCCe
Confidence 76322 11 247788999999999994
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-12 Score=112.71 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---CC-C-Cccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---VL-P-EKVD 146 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~-~-~~~D 146 (391)
++.+|||||||+|..+..+++. + ..+|+|||++ .|++.|+ ++.++|+++++|+.+. +. . .+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 4679999999999999999886 2 3489999999 8888776 1235599999999884 32 2 3799
Q ss_pred EEEEccccccccCcchHHHHHHHHhc-cccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDR-WLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~-~LkpgG~~i~~~~ 185 (391)
+|+++.. + . ....++..+.+ +|||||++++...
T Consensus 155 ~I~~d~~-~----~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-H----A-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-C----S-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-h----H-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998653 1 1 45678888887 9999999998754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=112.13 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=83.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cC-C-CCcEEEEEcccccC-C-CCCcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NN-L-QDVVEVIEGSVEDI-V-LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~-~-~~~~~D~Iv 149 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. .+ + ..+++++.+|+.+. . .+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 5589999999999999999987 45689999999 999999998764 22 2 35699999999874 2 347899999
Q ss_pred Ecccccc---ccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYF---LLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~---l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++..... ..... ....+++.+.++|+|||+++....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9764432 11111 136789999999999999987643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=119.18 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++.+++. |+++++|+.++. .+++||+|+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEE
Confidence 3467899999999999999999876 33589999999 9999999999999987 899999998865 357899999
Q ss_pred Eccccccc--c--Cc--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFL--L--RE--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l--~--~e--------~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++..... . .. . ....+++.+.++|||||+++.+.+++.
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 87532111 0 00 0 126688889999999999998766643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=106.92 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCC-
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~------~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~- 142 (391)
..++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|++++..+++ ..+++++.+|..+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 456789999999999999998885 42 489999999 999999999877651 13499999999873222
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|++...... +.+.+.++|||||.+++..
T Consensus 162 ~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPD---------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCchHH---------HHHHHHHHhcCCCEEEEEE
Confidence 68999998543221 2256678899999988653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=111.54 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=80.4
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC-CCcccEEEEcccc
Q 016320 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL-PEKVDVIISEWMG 154 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~~D~Ivs~~~~ 154 (391)
.+|||||||+|.++..+++. ...+|++||++ .+++.|++++.... ..+++++.+|..++ .. .++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999984 33489999999 99999999875432 35699999999875 23 3789999997643
Q ss_pred ccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016320 155 YFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
....... ....+++.++++|+|||+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 3211111 12678999999999999998654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-12 Score=113.59 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=70.9
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV--- 140 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~--- 140 (391)
+.+++.......++++|||||||+|.++..+++.|+.+|+|+|+| .|++.|+++... +.... .++..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhH
Confidence 344555444345678999999999999999999987799999999 999887664322 22211 1222211
Q ss_pred CCC-cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 141 LPE-KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 141 ~~~-~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++. .+|.+.++.+-.. +..++..+.++|||||.+++
T Consensus 99 ~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 122 3566666543221 25678899999999999887
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-11 Score=115.26 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------Ce
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RK 103 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~---------------------------------------~~ 103 (391)
.+....++.......++..|||++||+|.+++.+|..+. .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 355667777777677788999999999999999887642 36
Q ss_pred EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc--ccCcchHHHHHHHHhccccC--Ce
Q 016320 104 VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF--LLRESMFDSVICARDRWLKP--TG 178 (391)
Q Consensus 104 V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~--l~~e~~~~~~l~~~~~~Lkp--gG 178 (391)
|+|+|++ .|++.|++++..+++.+.|++.++|+.++..+++||+|++++. |. +..+..+..+...+.+.|++ |+
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPP-YGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999 9999999999999998789999999999887789999999874 32 22223455666666666765 55
Q ss_pred EE
Q 016320 179 VM 180 (391)
Q Consensus 179 ~~ 180 (391)
.+
T Consensus 339 ~~ 340 (385)
T 3ldu_A 339 SY 340 (385)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=118.33 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++++++.+ |.++++|..++. .+++||+|+
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~Il 180 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIV 180 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCEEE
Confidence 3567899999999999999998876 34589999999 99999999999999975 999999998764 357899999
Q ss_pred Ecccccccc--C-c----------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFLL--R-E----------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~--~-e----------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...... . . .....++..+.++|||||+++.+.+++.
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 976422111 0 0 0123678888999999999998766653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=117.97 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccCCCCCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV-KANNLQDVVEVI--EGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~D~Ivs~~ 152 (391)
..++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......++.++ ++|+.+++ +++||+|+|+.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEEeC
Confidence 456789999999999999999988 4799999996532221110 000111148899 99999876 57999999986
Q ss_pred ccccccC-cch-H--HHHHHHHhccccCCe--EEEc
Q 016320 153 MGYFLLR-ESM-F--DSVICARDRWLKPTG--VMYP 182 (391)
Q Consensus 153 ~~~~l~~-e~~-~--~~~l~~~~~~LkpgG--~~i~ 182 (391)
. +.... ..+ . ..++..+.++|+||| .+++
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 5 32211 111 1 126788889999999 8876
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=110.54 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
.++++|||||||+|.++..+++.. ..+|+++|++ .+++.|++++...+ + ..+++++.+|+.+.. .+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 356899999999999999999873 5689999999 99999999875432 2 346999999987742 247899999
Q ss_pred EccccccccCcchH-HHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~~~-~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++............ ..+++.+.++|+|||+++....
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 97643332222111 6789999999999999987644
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=112.74 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------Ce
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RK 103 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~---------------------------------------~~ 103 (391)
.+.+..++.......++..|||.+||+|.+.+.+|..+. .+
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 355667777776667788999999999999998887643 25
Q ss_pred EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc-cccccCcchHHHHHHHHhccccC--CeE
Q 016320 104 VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM-GYFLLRESMFDSVICARDRWLKP--TGV 179 (391)
Q Consensus 104 V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~-~~~l~~e~~~~~~l~~~~~~Lkp--gG~ 179 (391)
|+|+|++ .|++.|+++++.+++.+.|+++++|+.++..+.+||+|++++. +.-+..+..+..+...+.+.||+ |+.
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 9999999 9999999999999998889999999999887789999999873 22232334566666666666665 665
Q ss_pred EE
Q 016320 180 MY 181 (391)
Q Consensus 180 ~i 181 (391)
+.
T Consensus 339 ~~ 340 (384)
T 3ldg_A 339 QF 340 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=103.57 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.+..+|||||||+|.+++.+. +..+|+|+|++ .|++.+++++..++.. ..+.++|.....+++++|+|++..+-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCCCCCCcchHHHHHHHH
Confidence 456899999999999999887 66689999999 9999999999998854 899999999888889999999865555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
++..+.. ...+ ++...|++++++|
T Consensus 180 ~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 180 LLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred Hhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 5544422 2333 4555789998776
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-11 Score=114.55 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------Ce
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RK 103 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~---------------------------------------~~ 103 (391)
.+....++.......++..|||.+||+|.+++.+|..+. .+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 355667777776667788999999999999998887643 25
Q ss_pred EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc--ccCcchHHHHHHHHhccccC--Ce
Q 016320 104 VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF--LLRESMFDSVICARDRWLKP--TG 178 (391)
Q Consensus 104 V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~--l~~e~~~~~~l~~~~~~Lkp--gG 178 (391)
|+|+|++ .|++.|+++++.+++.+.|+++++|+.++..+.+||+|++++. |. +..+..+..+...+.+.|++ ||
T Consensus 266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPP-YGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCC-CccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 9999999 9999999999999998889999999999887789999999873 32 22223455556666666665 66
Q ss_pred EEE
Q 016320 179 VMY 181 (391)
Q Consensus 179 ~~i 181 (391)
.+.
T Consensus 345 ~~~ 347 (393)
T 3k0b_A 345 SVY 347 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-11 Score=107.51 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
.+.++..+...+ .+..+|||||||+|.+++.++.. +..+|+|+|++ .|++.+++++..+++. .++.+.|...-.
T Consensus 119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~ 194 (281)
T 3lcv_B 119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC
T ss_pred HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC
Confidence 344555555554 33579999999999999998877 56699999999 9999999999999987 788999988877
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
+++++|++++..+-+++..+.. ...+ .+...|+++|++|
T Consensus 195 p~~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 7799999999666566544422 2334 5667799999877
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=111.99 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=79.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.+. +|+|+|+| .+++.|+++++.|++. ++++++|+.++.. .+||+|++++.-.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~-~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV-KGFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC-TTCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc-cCCCEEEEcCCcc
Confidence 4678999999999999999999855 89999999 9999999999999986 9999999998743 4899999987421
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
. ....+++.+. .|+|+|+++++.
T Consensus 365 g-----~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 G-----LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C-----SCHHHHHHHH-HHCCSEEEEEES
T ss_pred c-----hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1 2233455553 489999888764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-11 Score=117.43 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=87.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~ 152 (391)
++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++.+++.+ |+++++|+.++. .+++||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence 7889999999999999999886 23589999999 99999999999999865 999999998864 357899999975
Q ss_pred ccccc--c--Cc---------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016320 153 MGYFL--L--RE---------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 153 ~~~~l--~--~e---------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
..+.. . .. .....++..+.++|||||+++.+.+++.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 32211 0 00 0124678888899999999998766553
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-11 Score=115.51 Aligned_cols=101 Identities=20% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCC---CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIV---LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~---~~~~~D~Iv 149 (391)
.++.+|||++||+|.+++.+++. |+++|+++|++ .+++.++++++.|++.++ ++++++|+.++. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35789999999999999999984 66799999999 999999999999999887 999999987652 346899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++.+ ....+++...++|++||+++...
T Consensus 131 lDP~g-------~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDPFG-------TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECCSS-------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCc-------CHHHHHHHHHHHhCCCCEEEEEe
Confidence 98721 12356777788899999776553
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-12 Score=114.94 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccCCCCCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV-KANNLQDVVEVI--EGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~D~Ivs~~ 152 (391)
..++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......+++++ ++|+++++ +++||+|+|+.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEECC
Confidence 456789999999999999999988 4799999996533222110 001111148999 99999876 57999999986
Q ss_pred ccccccC-cch-H--HHHHHHHhccccCCe--EEEcc
Q 016320 153 MGYFLLR-ESM-F--DSVICARDRWLKPTG--VMYPS 183 (391)
Q Consensus 153 ~~~~l~~-e~~-~--~~~l~~~~~~LkpgG--~~i~~ 183 (391)
. +.... ..+ . ..++..+.++||||| .+++.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 5 32211 111 1 126788889999999 88763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-11 Score=103.09 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------C----C
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------P----E 143 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~----~ 143 (391)
..++.+|||||||+|.++..+++.+. +|+|+|++++. .+ .+++++++|+.+... + +
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccccc----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 34678999999999999999999844 89999999431 12 248999999987641 1 4
Q ss_pred cccEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016320 144 KVDVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+||+|+|+......... .....++..+.++|||||.++.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~ 137 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL 137 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 89999997632211110 1234667778899999999884
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-11 Score=109.78 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=65.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++..+++. +++++++|+.++++ .+||+
T Consensus 33 ~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~-~v~~~~~D~~~~~~-~~~D~ 109 (299)
T 2h1r_A 33 KIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYN-NLEVYEGDAIKTVF-PKFDV 109 (299)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCC-CEEC----CCSSCC-CCCSE
T ss_pred HHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECchhhCCc-ccCCE
Confidence 344444456778999999999999999998865 89999999 9999999999887774 49999999988765 48999
Q ss_pred EEEccc
Q 016320 148 IISEWM 153 (391)
Q Consensus 148 Ivs~~~ 153 (391)
|++++.
T Consensus 110 Vv~n~p 115 (299)
T 2h1r_A 110 CTANIP 115 (299)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=106.87 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++. +..+|+++|+| .+++.|+++. .++.++.+|+.+++++ ++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 46789999999999999999987 23389999999 8999888754 2379999999887765 78999998432
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+..+.++|+|||.+++.
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVITA 177 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEEEE
Confidence 12367788999999998864
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-11 Score=104.05 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 154 (391)
.++.+|||||||+|.++..++ .+|+++|++ . +++++++|+.+++++ ++||+|++....
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 466899999999999988773 479999999 5 267889999987765 789999984432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+. .....++..+.++|+|||.+++..
T Consensus 126 ---~~-~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 126 ---MG-TNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp ---CS-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cc-cCHHHHHHHHHHhCCCCeEEEEEE
Confidence 23 457888999999999999988753
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-10 Score=112.91 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=88.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~I 148 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ ++++++|+.++. ++ ++||+|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCEE
Confidence 4567889999999999999999885 32589999999 99999999999999865 999999998875 44 689999
Q ss_pred EEcccccccc--C-c---------ch-------HHHHHHHHhccccCCeEEEccccee
Q 016320 149 ISEWMGYFLL--R-E---------SM-------FDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 149 vs~~~~~~l~--~-e---------~~-------~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++++..+... . . .. ...++..+.++|||||.++...+++
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9875322111 0 0 01 1567888999999999998766554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=111.74 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCc------ccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTG------SGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG------~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
..|.+.+.... .++.+||||||| +|..++.+++. ...+|+|||+| .|. . ...+|+++++
T Consensus 204 ~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~G 271 (419)
T 3sso_A 204 PHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQG 271 (419)
T ss_dssp HHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEEC
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEe
Confidence 34444444332 356899999999 66666666654 34489999999 762 1 1245999999
Q ss_pred ccccCCCC-------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 135 SVEDIVLP-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~~-------~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+.++++. ++||+|+|+...+ .......++.+.++|||||++++...
T Consensus 272 Da~dlpf~~~l~~~d~sFDlVisdgsH~----~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 272 DQNDAEFLDRIARRYGPFDIVIDDGSHI----NAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CTTCHHHHHHHHHHHCCEEEEEECSCCC----HHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred cccccchhhhhhcccCCccEEEECCccc----chhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99886543 7899999965321 23467789999999999999987643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-11 Score=113.81 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=70.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEec----h-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA----T-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~----s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~D~Iv 149 (391)
..++.+|||||||+|.++..+++. .+|+|||+ + .+++.+. .+..+ .++|+++++ |+.+++ +++||+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~-~~~fD~V~ 153 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP-PERCDTLL 153 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC-CCCCSEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC-cCCCCEEE
Confidence 346789999999999999999988 37999999 4 4332111 11111 135999999 888764 47899999
Q ss_pred EccccccccCcch---HHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLLRESM---FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~---~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+..........+ ...++..+.++|||||.+++.
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9864331111111 114677788999999988763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-11 Score=120.98 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=73.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC-CCcccEEEE-cc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL-PEKVDVIIS-EW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~~D~Ivs-~~ 152 (391)
++.+|||||||.|+++..+|+.|+ +|+|||.+ .+++.|+..+.+++.-+ |++.+++++++ .. +++||+|+| +.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhccCCCccEEEECcc
Confidence 457999999999999999999999 79999999 99999999998887433 99999999987 33 378999999 33
Q ss_pred ccccccCcchHHHHHHHHhccccCCeE
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~ 179 (391)
+.+.. ....+.. +..+.+.|+++|.
T Consensus 144 ~ehv~-~~~~~~~-~~~~~~tl~~~~~ 168 (569)
T 4azs_A 144 FHHIV-HLHGIDE-VKRLLSRLADVTQ 168 (569)
T ss_dssp HHHHH-HHHCHHH-HHHHHHHHHHHSS
T ss_pred hhcCC-CHHHHHH-HHHHHHHhccccc
Confidence 33332 2211222 2234455666654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-10 Score=110.47 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 140 (391)
++.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| .+++.|+++++.+++. +++++++|+.+..
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 45555555555555567899999999999999999884 489999999 9999999999999987 4999999998732
Q ss_pred ---CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 ---LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++ ++||+|++++.-... ..+++.+.+ ++|+++++++
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEE
Confidence 22 589999998743222 123444332 6888877654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=111.58 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=80.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+...+...++.+|||||||+|.++..+++.. ..+++++|.+.++. +++++..++.++|+++.+|+.+ +.| +||+|
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~~D~v 251 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-HADVH 251 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-CCSEE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCCC-CCC-CCcEE
Confidence 4444455567899999999999999998874 33789999985444 3333444566779999999973 445 89999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++..+.+.+.. .....++++++++|||||.+++...
T Consensus 252 ~~~~vlh~~~d-~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 252 VLKRILHNWGD-EDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp EEESCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred EEehhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98543333222 2236889999999999999986543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.2e-11 Score=108.15 Aligned_cols=95 Identities=20% Similarity=0.031 Sum_probs=76.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
.+++|||||||+|.++..+++.+ .+|+++|++ .+++.|++++.. +++ .++++++.+|..++. ++||+|+++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~ 148 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE 148 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence 45899999999999999888886 799999999 999999876532 112 246999999998865 78999998642
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+...+++.+.+.|+|||+++..
T Consensus 149 --------dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 149 --------PDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp --------CCHHHHHHHHTTEEEEEEEEEE
T ss_pred --------ChHHHHHHHHHhcCCCcEEEEE
Confidence 1123788999999999999864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=101.23 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-------------
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV------------- 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 140 (391)
.++.+|||||||+|.++..+++. + ..+|+|+|++++. .. .+++++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhccccccccc
Confidence 46789999999999999999987 3 3589999999531 12 23899999998865
Q ss_pred ------------CC-CcccEEEEccccccccC-cch-------HHHHHHHHhccccCCeEEEc
Q 016320 141 ------------LP-EKVDVIISEWMGYFLLR-ESM-------FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 141 ------------~~-~~~D~Ivs~~~~~~l~~-e~~-------~~~~l~~~~~~LkpgG~~i~ 182 (391)
++ ++||+|+|+...+.... ..+ ...++..+.++|+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 34 68999999754222110 001 12467888999999999886
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=98.04 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. |. .+|+++|++++++. .+++++++|+.+.+ ++ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------VGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence 456789999999999999999887 54 58999999963221 34999999998864 44 78
Q ss_pred ccEEEEccccccccCc--c------hHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRE--S------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e--~------~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||+|+++...+..... . ....++..+.++|+|||.+++.
T Consensus 89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999996543222111 0 0157788899999999998853
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=111.61 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=87.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+++.+. .+|+|+|++ .+++.++++++.+++. ++++++|+.++. ++ ++||+|+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 446788999999999999999998743 589999999 9999999999999884 799999998864 33 6899999
Q ss_pred Ecccccccc---Cc---------ch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFLL---RE---------SM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~---~e---------~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+++...... .. .. ...++..+.++|||||.++...+++.
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 875322111 00 11 14778889999999999998766543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=109.87 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=81.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc---------------CCCCcEEEEEcccccCC
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN---------------NLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~~~ 140 (391)
++.+|||+|||+|.+++.+++. ++.+|+++|++ .+++.|+++++.| ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 5789999999999999999987 66689999999 9999999999999 8766 999999997752
Q ss_pred --CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 --LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 --~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..++||+|+.++.+. ...+++...+.|++||.++..
T Consensus 126 ~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 126 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 236899999876321 245677788889999987654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-10 Score=97.76 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=69.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC---------CeEEEEechHHHHHHHHHHHHcCCCCcEEEE-EcccccCC----
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GA---------RKVYAVEATKMSDHARTLVKANNLQDVVEVI-EGSVEDIV---- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~---------~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~---- 140 (391)
..++.+|||||||+|.++..+++. +. .+|+|+|++++. .+ .+++++ .+|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-EGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-CCCeEEEeccCCCHHHHHH
Confidence 356789999999999999999987 54 589999999521 12 238888 88876643
Q ss_pred ----CC-CcccEEEEccccccc-cCcch-------HHHHHHHHhccccCCeEEEcc
Q 016320 141 ----LP-EKVDVIISEWMGYFL-LRESM-------FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ----~~-~~~D~Ivs~~~~~~l-~~e~~-------~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++ ++||+|+|+...... .+..+ ...++..+.++|+|||.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 589999996532221 11111 146788889999999998864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-10 Score=108.61 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-- 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 140 (391)
+.....+.+.+.. .+.+|||+|||+|.+++.+|+. +.+|+|+|++ .+++.|+++++.|++. +++++.+|+.++.
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH
Confidence 3444444444432 3578999999999999999875 5589999999 9999999999999985 4999999987752
Q ss_pred CC---------------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 141 LP---------------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ~~---------------~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+. .+||+|+.++.-.. ....++ +.|+++|.++...+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-----~~~~~~----~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG-----LDSETE----KMVQAYPRILYISC 327 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-----CCHHHH----HHHTTSSEEEEEES
T ss_pred HhhccccccccccccccCCCCEEEECcCccc-----cHHHHH----HHHhCCCEEEEEEC
Confidence 11 27999999874221 122233 34557777765443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=101.67 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
..+.|.+.+...++.+|||||||+|.++..+++.+. +|+|||++ .|++.+++++... ++++++++|+.++.++ .
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence 344455556667789999999999999999999855 89999999 9999999988732 3499999999988766 5
Q ss_pred cccEEEEcc
Q 016320 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivs~~ 152 (391)
+||+|++++
T Consensus 114 ~fD~Iv~Nl 122 (295)
T 3gru_A 114 DFNKVVANL 122 (295)
T ss_dssp CCSEEEEEC
T ss_pred CccEEEEeC
Confidence 799999975
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-10 Score=101.30 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=76.1
Q ss_pred CCEEEEECCcc---cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCccc
Q 016320 79 GKTVLDVGTGS---GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEKVD 146 (391)
Q Consensus 79 ~~~VLDlGcG~---G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D 146 (391)
...|||||||+ |.+...+.+. ...+|++||.| .|++.|++++...+ ..+++++++|++++.. .+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccC
Confidence 36899999996 4454444433 33489999999 99999999876543 2459999999988520 12344
Q ss_pred -----EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 -----VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 -----~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.|+++.+.+++..+.....++..+.+.|+|||++++...
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 466665555555544467889999999999999987643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-10 Score=101.80 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=74.2
Q ss_pred HhHHHHHHHHH-hcCCCCCCCEEEEECC------cccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEE-
Q 016320 61 VRMDAYFNSIF-QNKHHFQGKTVLDVGT------GSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEV- 131 (391)
Q Consensus 61 ~r~~~~~~~i~-~~~~~~~~~~VLDlGc------G~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~- 131 (391)
.++..+.+.+. ..+...++.+|||||| |+|. ...+...+ ..+|+|+|+++. +. ++++
T Consensus 45 ~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v~-~v~~~ 110 (290)
T 2xyq_A 45 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------VS-DADST 110 (290)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------BC-SSSEE
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------CC-CCEEE
Confidence 44555555553 3344567889999999 4476 33333344 358999999932 11 3788
Q ss_pred EEcccccCCCCCcccEEEEccccccc-----c---CcchHHHHHHHHhccccCCeEEEcc
Q 016320 132 IEGSVEDIVLPEKVDVIISEWMGYFL-----L---RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 132 ~~~d~~~~~~~~~~D~Ivs~~~~~~l-----~---~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++|+.++.++++||+|+|+...... . ....+..+++.+.++|||||.+++.
T Consensus 111 i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 111 LIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp EESCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999998766889999997532210 1 1223457889999999999999864
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.5e-10 Score=105.14 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv 149 (391)
.++.+|||+|||+|.++..+++... .+|+|+|++ .+++.|+.++..+++. +.++++|.......++||+|+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--~~i~~~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLLVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--ceEEECCCCCccccCCccEEE
Confidence 3567999999999999998887632 479999999 9999999999888873 899999987754457899999
Q ss_pred Eccc-cccccC-------------cchH-HHHHHHHhccccCCeEEEccc
Q 016320 150 SEWM-GYFLLR-------------ESMF-DSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~-~~~l~~-------------e~~~-~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++. ++.... .... ..++..+.++|+|||++++..
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9864 222100 0011 246888889999999877553
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-09 Score=98.73 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=84.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~ 147 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++++++.+ |+++++|+.++... .+||.
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccccCCCCE
Confidence 3467899999999999999998885 34589999999 99999999999999865 99999999887532 47999
Q ss_pred EEEcccccc--ccC------------cch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016320 148 IISEWMGYF--LLR------------ESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~--l~~------------e~~-------~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|++++.... ... ... ...++....++|+ ||+++.+.+++.
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 998753211 100 011 1245777777887 898887666543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=106.94 Aligned_cols=106 Identities=22% Similarity=0.172 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
+.+.+.+...++.+|||+|||+|.+++.+++. ...+|+|+|++ .+++.| .+++++++|+.+....++
T Consensus 29 ~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~~~ 98 (421)
T 2ih2_A 29 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPGEA 98 (421)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCSSC
T ss_pred HHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCccCC
Confidence 34444444345679999999999999999985 34589999999 777666 248999999998765579
Q ss_pred ccEEEEccccccccCc---------c------------------hHHHHHHHHhccccCCeEEEccc
Q 016320 145 VDVIISEWMGYFLLRE---------S------------------MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e---------~------------------~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
||+|++++. +..... . ....++..+.++|+|||.+++..
T Consensus 99 fD~Ii~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 99 FDLILGNPP-YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp EEEEEECCC-CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECcC-ccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999863 221111 1 11256778889999999876543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=103.92 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+. ..+..+|||||||+|.++..+++.. ..+++++|+..+++.|++. .+|+++.+|+.+ ++|.. |+
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~-D~ 264 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-------SGVEHLGGDMFD-GVPKG-DA 264 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC-SE
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-------CCCEEEecCCCC-CCCCC-CE
Confidence 334343 3446899999999999999998863 3479999997666655431 359999999987 55544 99
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++..+.+.+.. .....+++.+++.|+|||.+++...
T Consensus 265 v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 265 IFIKWICHDWSD-EHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp EEEESCGGGBCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEEechhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998554443332 2356789999999999999887544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=98.56 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=70.2
Q ss_pred hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE
Q 016320 55 EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE 133 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~ 133 (391)
.++.|..- .+.|.+.+...++ +|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .++++++
T Consensus 28 nfL~d~~i----~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~----~~v~vi~ 97 (271)
T 3fut_A 28 NFLVSEAH----LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG----LPVRLVF 97 (271)
T ss_dssp CEECCHHH----HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT----SSEEEEE
T ss_pred cccCCHHH----HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC----CCEEEEE
Confidence 34555543 3344444455677 999999999999999999985 79999999 999999987752 3599999
Q ss_pred cccccCCCC--CcccEEEEccc
Q 016320 134 GSVEDIVLP--EKVDVIISEWM 153 (391)
Q Consensus 134 ~d~~~~~~~--~~~D~Ivs~~~ 153 (391)
+|+.+++++ ..+|.|++++.
T Consensus 98 ~D~l~~~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 98 QDALLYPWEEVPQGSLLVANLP 119 (271)
T ss_dssp SCGGGSCGGGSCTTEEEEEEEC
T ss_pred CChhhCChhhccCccEEEecCc
Confidence 999998765 36899999873
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=102.91 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=78.1
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+. ..+..+|||||||+|.++..+++. ...+++++|+..+++.|++. .+|+++.+|+.+ +.|.. |+
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~ 262 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-------PGVTHVGGDMFK-EVPSG-DT 262 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC-SE
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-------CCeEEEeCCcCC-CCCCC-CE
Confidence 333343 445689999999999999999886 33479999997676655531 459999999987 56644 99
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++..+.+.+.. .....+++.+++.|+|||.+++...
T Consensus 263 v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 263 ILMKWILHDWSD-QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEehHHhccCCH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 998554333322 2456789999999999999887544
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-09 Score=96.24 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-- 142 (391)
+.+.|.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.++++.... ++++++++|+.+++++
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence 445566666666788999999999999999999875 89999999 9999999887542 3599999999998766
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
..+ .|++++
T Consensus 94 ~~~-~vv~nl 102 (244)
T 1qam_A 94 QSY-KIFGNI 102 (244)
T ss_dssp CCC-EEEEEC
T ss_pred CCe-EEEEeC
Confidence 245 566765
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-09 Score=100.43 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+..........+|||||||+|.++..++++.. .+++..|...+++.|++++...+ .++|+++.+|+.+.+. ..+|+
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~D~ 247 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEADL 247 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCCSE
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCceE
Confidence 344444445568999999999999999988743 36788887788999988876544 5679999999987544 46899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++..+.+.+..+ ....+|+.+++.|+|||.+++...
T Consensus 248 ~~~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 248 YILARVLHDWADG-KCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp EEEESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEeeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEe
Confidence 9985443433322 356789999999999999886543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=102.72 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=77.1
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
+...+. ..++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++ . .+++++.+|+.+ +++. ||+
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~~-~D~ 270 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------L-SGIEHVGGDMFA-SVPQ-GDA 270 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------C-TTEEEEECCTTT-CCCC-EEE
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------c-CCCEEEeCCccc-CCCC-CCE
Confidence 334443 3456899999999999999999875 337888999767766553 1 249999999987 5555 999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|++..+.+.+.. .....+++.+.++|+|||.+++...
T Consensus 271 v~~~~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 271 MILKAVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEESSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecccccCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998543333221 1234889999999999999887643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=97.56 Aligned_cols=88 Identities=14% Similarity=0.258 Sum_probs=68.4
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
++.|..- .+.|.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .++++++++
T Consensus 11 FL~d~~i----~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~---~~~v~~i~~ 82 (255)
T 3tqs_A 11 FLHDSFV----LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ---QKNITIYQN 82 (255)
T ss_dssp EECCHHH----HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT---CTTEEEEES
T ss_pred cccCHHH----HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh---CCCcEEEEc
Confidence 3555533 33344445556788999999999999999999875 89999999 999999998764 245999999
Q ss_pred ccccCCCC-----CcccEEEEcc
Q 016320 135 SVEDIVLP-----EKVDVIISEW 152 (391)
Q Consensus 135 d~~~~~~~-----~~~D~Ivs~~ 152 (391)
|+.+++++ +++| |++++
T Consensus 83 D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 83 DALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp CTTTCCGGGSCCSSCEE-EEEEC
T ss_pred chHhCCHHHhccCCCeE-EEecC
Confidence 99988653 4678 77776
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-11 Score=109.09 Aligned_cols=108 Identities=20% Similarity=0.284 Sum_probs=77.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--Ccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~ 145 (391)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|++++. ..++++++++|+.+++++ ++|
T Consensus 20 ~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc
Confidence 34444555677899999999999999999987 489999999 89988877664 234599999999998765 578
Q ss_pred cEEEEccccccccCcchHHHH----------H----HHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSV----------I----CARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~----------l----~~~~~~LkpgG~~i~~ 183 (391)
.|++++. |.... ..+..+ + +.+.++|+|||.+.+.
T Consensus 96 -~vv~n~P-y~~~~-~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 96 -KIVGNIP-YHLST-QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp -EEEEECC-SSSCH-HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred -EEEEeCC-ccccH-HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 7777753 22211 112222 2 4467889999976544
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=105.32 Aligned_cols=117 Identities=15% Similarity=0.018 Sum_probs=85.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------------CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEE
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------------GARKVYAVEAT-KMSDHARTLVKANNLQD-VVE 130 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--------------g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~ 130 (391)
.+.+.+.+...++.+|||.|||+|.+.+.+++. ...+++|+|++ .+++.|+.++...++.. .+.
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 344444444556789999999999998888764 12369999999 99999999998888752 478
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcc--------------hHHHHHHHHhccccCCeEEEcc
Q 016320 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRES--------------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 131 ~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~--------------~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.++|........+||+|++++.-....... ....++..+.++|+|||++.+.
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 9999988776557899999987322111100 1135677888999999987654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.2e-09 Score=106.76 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-----------------------------------------
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA----------------------------------------- 101 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~----------------------------------------- 101 (391)
.+.+..++.......++..|||.+||+|.+.+.+|..+.
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 355667777766666788999999999999988886521
Q ss_pred --CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEcccccc--ccCcchHHHHHHHHhcc
Q 016320 102 --RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWMGYF--LLRESMFDSVICARDRW 173 (391)
Q Consensus 102 --~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~Ivs~~~~~~--l~~e~~~~~~l~~~~~~ 173 (391)
.+|+|+|++ .|++.|++++..+|+.+.|++.++|+.++..+ +++|+||+++. |. +..+..+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP-YG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPP-YGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCC-CCC---CCHHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCC-ccccccchhHHHHHHHHHHHH
Confidence 369999999 99999999999999998899999999998544 28999999873 32 22233445555554444
Q ss_pred ---ccCCeEEEc
Q 016320 174 ---LKPTGVMYP 182 (391)
Q Consensus 174 ---LkpgG~~i~ 182 (391)
+.|||.+.+
T Consensus 334 lk~~~~g~~~~i 345 (703)
T 3v97_A 334 MKNQFGGWNLSL 345 (703)
T ss_dssp HHHHCTTCEEEE
T ss_pred HHhhCCCCeEEE
Confidence 447887653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-08 Score=85.75 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=75.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--CCcEEEEEcccccC---------------
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--QDVVEVIEGSVEDI--------------- 139 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--------------- 139 (391)
+.++|||+||| ..++++|+....+|++||.+ +..+.|+++++++++ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 45799999985 78888887633589999999 999999999999998 78899999996542
Q ss_pred --------CCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 140 --------VLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 --------~~~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+ ++||+|+.+.- . ....+..+.++|+|||+++....
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-k-------~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-F-------RVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-S-------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-C-------chhHHHHHHHhcCCCeEEEEeCC
Confidence 123 68999998651 0 12334445588999999987653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.8e-09 Score=98.73 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=73.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|+..+++.|++ .. +++++.+|+.+ +++. ||+|++..+.+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~-~v~~~~~d~~~-~~p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------SN-NLTYVGGDMFT-SIPN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------BT-TEEEEECCTTT-CCCC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------CC-CcEEEeccccC-CCCC-ccEEEeehhhcc
Confidence 55899999999999999998873 347999999767766654 12 39999999976 4554 999998544333
Q ss_pred ccCcchHHHHHHHHhccccC---CeEEEcccc
Q 016320 157 LLRESMFDSVICARDRWLKP---TGVMYPSHA 185 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~Lkp---gG~~i~~~~ 185 (391)
+..+ ....+++.++++||| ||.+++...
T Consensus 259 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 259 WTDK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp SCHH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 3221 234889999999999 999887644
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=99.09 Aligned_cols=78 Identities=22% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechH--------HHHHHHHHHHHcCCCCcEEEEEcccccC-C-CC---
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--------MSDHARTLVKANNLQDVVEVIEGSVEDI-V-LP--- 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~--------~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~--- 142 (391)
..++.+|||+|||+|.+++.+|+.|. +|+++|+++ +++.|+++++.+++.++++++++|+.++ . ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 34568999999999999999999876 799999984 3455666777777766799999999875 2 33
Q ss_pred CcccEEEEcccc
Q 016320 143 EKVDVIISEWMG 154 (391)
Q Consensus 143 ~~~D~Ivs~~~~ 154 (391)
++||+|+++++.
T Consensus 160 ~~fD~V~~dP~~ 171 (258)
T 2r6z_A 160 GKPDIVYLDPMY 171 (258)
T ss_dssp CCCSEEEECCCC
T ss_pred CCccEEEECCCC
Confidence 689999998753
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-09 Score=101.66 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=64.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccC-CC--CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDI-VL--PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~~--~~~~D~Ivs~ 151 (391)
++.+|||+|||+|..++.+++.+. +|++||+| .|++.|+++++.+ ++ ++++++++|+.+. .. .++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 478999999999999999998876 89999999 9999999999988 87 5699999999885 21 1589999998
Q ss_pred cc
Q 016320 152 WM 153 (391)
Q Consensus 152 ~~ 153 (391)
+.
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 74
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-09 Score=91.83 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=67.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---C-CcccEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---P-EKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~-~~~D~Iv 149 (391)
...++.+|||||||. | ++|+| .|++.|+++... +++++++|+.++++ + ++||+|+
T Consensus 9 g~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~ 68 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIIL 68 (176)
T ss_dssp TCCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred CCCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEE
Confidence 345789999999996 2 39999 999999887532 28999999998865 4 7899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|....+.+. .+...++++++++|||||.+++.
T Consensus 69 ~~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 69 SGLVPGSTT--LHSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp ECCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ECChhhhcc--cCHHHHHHHHHHHCCCCEEEEEE
Confidence 944322221 34578899999999999999883
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=93.71 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=62.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC---eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~---~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
+.|.+.+...++.+|||||||+|.++..+++.+.. +|+|+|++ .|++.++++. ..+++++++|+.+++++.
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhH
Confidence 34444455567889999999999999999988652 29999999 9999999883 235999999999987653
Q ss_pred -------cccEEEEcc
Q 016320 144 -------KVDVIISEW 152 (391)
Q Consensus 144 -------~~D~Ivs~~ 152 (391)
..+.||+++
T Consensus 107 ~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNL 122 (279)
T ss_dssp GSCSSSSCCEEEEEEC
T ss_pred hcccccCCceEEEEcc
Confidence 234677776
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.8e-09 Score=93.16 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
+.+.|.+.+...++.+|||||||+|.++..+++.|+.+|+|+|++ .|++.++++ . ..+++++++|+.+++++..
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL 93 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc
Confidence 344455556666788999999999999999999876699999999 999998876 1 2459999999999876531
Q ss_pred --ccEEEEcc
Q 016320 145 --VDVIISEW 152 (391)
Q Consensus 145 --~D~Ivs~~ 152 (391)
...|++++
T Consensus 94 ~~~~~vv~Nl 103 (249)
T 3ftd_A 94 GKELKVVGNL 103 (249)
T ss_dssp CSSEEEEEEC
T ss_pred cCCcEEEEEC
Confidence 23677765
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=95.15 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---C-Ccc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---P-EKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~-~~~ 145 (391)
+...++.+|||+|||+|.++..+++.. ..+|+|+|.+ .|++.|+++++.++ ++++++++|+.++. + . .+|
T Consensus 22 L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~ 99 (301)
T 1m6y_A 22 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKV 99 (301)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCC
Confidence 344578899999999999999999873 4589999999 99999999998877 46999999998864 1 1 579
Q ss_pred cEEEEcc
Q 016320 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivs~~ 152 (391)
|.|++++
T Consensus 100 D~Vl~D~ 106 (301)
T 1m6y_A 100 DGILMDL 106 (301)
T ss_dssp EEEEEEC
T ss_pred CEEEEcC
Confidence 9999876
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=96.42 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|++.+++.|++ ..+ ++++.+|+.+ +.+ .||+|++..+.+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~-v~~~~~d~~~-~~~-~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------NEN-LNFVGGDMFK-SIP-SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------CSS-EEEEECCTTT-CCC-CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------CCC-cEEEeCccCC-CCC-CceEEEEcccccC
Confidence 45799999999999999999874 337999999877765553 233 9999999987 555 5999998544333
Q ss_pred ccCcchHHHHHHHHhccccC---CeEEEcccc
Q 016320 157 LLRESMFDSVICARDRWLKP---TGVMYPSHA 185 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~Lkp---gG~~i~~~~ 185 (391)
+..+ ....+++.+.+.|+| ||.+++...
T Consensus 264 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 264 WNDE-QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp SCHH-HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 3221 244889999999999 999887543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-08 Score=91.98 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=63.7
Q ss_pred HHhcCCCCCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CCCcEEEEEccccc
Q 016320 70 IFQNKHHFQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQDVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~--~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~~~v~~~~~d~~~ 138 (391)
+.+.+...++ .+|||+|||+|..++.+++.|+ +|++||.+ .++..++++++.. + +.++++++++|..+
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 4444444456 8999999999999999999988 69999999 7777666654321 2 32459999999987
Q ss_pred C-C-CCCcccEEEEcccc
Q 016320 139 I-V-LPEKVDVIISEWMG 154 (391)
Q Consensus 139 ~-~-~~~~~D~Ivs~~~~ 154 (391)
+ . ++++||+|+++++-
T Consensus 157 ~L~~~~~~fDvV~lDP~y 174 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMF 174 (258)
T ss_dssp HSTTCSSCCSEEEECCCC
T ss_pred HHHhCcccCCEEEEcCCC
Confidence 4 2 34579999999854
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=87.21 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--C-C-CCcEEEEEcccccCCC--CCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--N-L-QDVVEVIEGSVEDIVL--PEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~-~-~~~v~~~~~d~~~~~~--~~~~D~I 148 (391)
...++||-||.|.|..+..+++. +..+|+.||++ .+++.+++..... + + ..+++++.+|...+-. .++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 34589999999999999999987 56799999999 8999999876431 1 2 3579999999988632 3789999
Q ss_pred EEccccccccCcc-hHHHHHHHHhccccCCeEEEccccee
Q 016320 149 ISEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 149 vs~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+.+........+. .-..+++.+++.|+|||+++......
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 9976543322221 12467888999999999998654443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=91.95 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCe--EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARK--VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE- 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~--V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~- 143 (391)
+.|.+.+...++.+|||||||+|.++. +++ + .+ |+|+|++ .|++.++++.... ++++++++|+.++++++
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHh
Confidence 334444445677899999999999999 765 4 36 9999999 9999998876432 35999999999876542
Q ss_pred -----cccEEEEccc
Q 016320 144 -----KVDVIISEWM 153 (391)
Q Consensus 144 -----~~D~Ivs~~~ 153 (391)
..|.|++++.
T Consensus 85 ~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHTSCEEEEEECC
T ss_pred hcccCCceEEEECCC
Confidence 3468888763
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=94.06 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=81.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C---------------CCeEEEEech-HHHHHHHHHHHHcCCCC-
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G---------------ARKVYAVEAT-KMSDHARTLVKANNLQD- 127 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g---------------~~~V~avD~s-~~~~~a~~~~~~~~~~~- 127 (391)
.+.+.+...++.+|||.+||+|.+.+.+++. + ..+++|+|++ .++..|+.++..+++.+
T Consensus 160 ~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 160 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 3444444456789999999999998887764 1 1269999999 89999999998888764
Q ss_pred ---cEEEEEcccccCC--CCCcccEEEEccccccccCc------------chHHHHHHHHhccccCCeEEEcc
Q 016320 128 ---VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRE------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ---~v~~~~~d~~~~~--~~~~~D~Ivs~~~~~~l~~e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+.++|..... ...+||+|++++. +..... ..-..++..+.++|+|||++.+.
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPP-f~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCC-cccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 2678899976542 1268999999873 222111 11235677778999999987644
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8.3e-08 Score=86.73 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs 150 (391)
....++.+|||||||+|.++..+++. ++.+|+|+|++ ++....... ...+. .+..+..++....++ +++|+|+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcCCCCccEEEe
Confidence 33456689999999999999998876 67789999998 641111100 00011 244456665444444 78999999
Q ss_pred ccccccccCcch---HHHHHHHHhccccCC-eEEEcc
Q 016320 151 EWMGYFLLRESM---FDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~---~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
+..........+ ...+++.+.++|+|| |.|+.-
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 875441111111 113467778999999 998863
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=78.16 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-H----------------------
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-K---------------------- 111 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g--~~~V~avD~s-~---------------------- 111 (391)
.+...+...+.........+.|||+|+..|..++.+++. + ..+|+++|.. .
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 344444444444333345679999999999988887654 1 4579999953 1
Q ss_pred ----HHHHHHHHHHHcCCC-CcEEEEEcccccCC--CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 112 ----MSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 112 ----~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++.+++++++.++. ++|+++.+++.+.- .+ ++||+|..+. . ..+ .....++.+..+|+|||+++++
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D---~y~-~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D---LYE-STWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C---SHH-HHHHHHHHHGGGEEEEEEEEES
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C---ccc-cHHHHHHHHHhhcCCCEEEEEc
Confidence 366789999999984 78999999997742 22 6899999764 1 112 2345688899999999999988
Q ss_pred cc
Q 016320 184 HA 185 (391)
Q Consensus 184 ~~ 185 (391)
..
T Consensus 244 D~ 245 (282)
T 2wk1_A 244 DY 245 (282)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-07 Score=81.23 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEEc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~D~Ivs~ 151 (391)
...++.+||||||++|.++..++.. |+++|+|+|+. .-.+ --..++..|++ .|+|+++ |+..++. .++|+|+|+
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-~P~~~~s~gwn-~v~fk~gvDv~~~~~-~~~DtllcD 151 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EPVPMSTYGWN-IVKLMSGKDVFYLPP-EKCDTLLCD 151 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCCTTTT-SEEEECSCCGGGCCC-CCCSEEEEC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-CcchhhhcCcC-ceEEEeccceeecCC-ccccEEEEe
Confidence 4567789999999999999977765 88899999997 3110 00012334554 4999999 9877654 789999998
Q ss_pred cccccccCcchH---HHHHHHHhccccCCeEEE
Q 016320 152 WMGYFLLRESMF---DSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~l~~e~~~---~~~l~~~~~~LkpgG~~i 181 (391)
+-......+-+- -.+|+-+.++|++ |.++
T Consensus 152 IgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 152 IGESSPSPTVEESRTIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEE
T ss_pred cCCCCCChhhhhhHHHHHHHHHHHhccc-CCEE
Confidence 643222211111 1256667899998 5444
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=87.63 Aligned_cols=106 Identities=20% Similarity=0.100 Sum_probs=79.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC----CCCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV----LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~D 146 (391)
.++.+|||.+||+|.+.+.+++. +..+++|+|++ .++..|+.++..+++. +.+.+.++|..... ...+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 46689999999999988887775 24589999999 8999999999888885 35899999987652 137899
Q ss_pred EEEEccccccccCc--------------------ch-HHHHHHHHhcccc-CCeEEEcc
Q 016320 147 VIISEWMGYFLLRE--------------------SM-FDSVICARDRWLK-PTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e--------------------~~-~~~~l~~~~~~Lk-pgG~~i~~ 183 (391)
+|++++. |...+. .. --.++..+.++|+ |||++.+.
T Consensus 300 ~IvaNPP-f~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~V 357 (542)
T 3lkd_A 300 GVLMNPP-YSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIV 357 (542)
T ss_dssp EEEECCC-TTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEE
T ss_pred EEEecCC-cCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEE
Confidence 9999873 221110 00 0136777788999 99987543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-07 Score=88.93 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=74.4
Q ss_pred CEEEEECCcccHHHHHHHHc--------C--------CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016320 80 KTVLDVGTGSGILAIWSAQA--------G--------ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~--------g--------~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 141 (391)
.+|||.+||||.+.+.+++. + ..+++|+|++ .++..|+.++..+++...+.+.++|....+.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 38999999999987776542 0 2379999999 8999999999999887655558888765432
Q ss_pred -CCcccEEEEcccccccc--------------------------Ccc-hHHHHHHHHhccccCCeEEEcc
Q 016320 142 -PEKVDVIISEWMGYFLL--------------------------RES-MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivs~~~~~~l~--------------------------~e~-~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+||+||+++. +... ... .--.++..+.++|+|||++.+.
T Consensus 326 ~~~~fD~Iv~NPP-f~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiV 394 (544)
T 3khk_A 326 PDLRADFVMTNPP-FNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALL 394 (544)
T ss_dssp TTCCEEEEEECCC-SSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccEEEECCC-cCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEE
Confidence 278999999873 2211 000 1114677778999999986543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=84.84 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--ccccCCCCCcccEEEE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--SVEDIVLPEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~D~Ivs 150 (391)
...++.+|||||||+|.++..+++ .++..|+|+|++ .+...+... ...+ ..+..+.. |+..+. ++++|+|+|
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~-~~~~DvVLS 162 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNME-VIPGDTLLC 162 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSC-CCCCSEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcC-CCCcCEEEe
Confidence 455778999999999999999885 477789999998 642222110 0011 12333333 443332 379999999
Q ss_pred ccccccccCcch---HHHHHHHHhccccCC--eEEEcc
Q 016320 151 EWMGYFLLRESM---FDSVICARDRWLKPT--GVMYPS 183 (391)
Q Consensus 151 ~~~~~~l~~e~~---~~~~l~~~~~~Lkpg--G~~i~~ 183 (391)
+..........+ ...+++-+.++|+|| |.|+.-
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 875442111111 123467778999999 988753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.5e-06 Score=79.35 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=86.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCC-----CcEEEEEcccccCC--CCCc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQ-----DVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~--~~~~ 144 (391)
+...+|.+|||+.+|.|.=+..+++.+. ..|+|+|++ .-+...++++++.+.. .++.+...|.+.+. .++.
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 3457889999999999999888888753 379999999 8888888888877653 35899999988763 3478
Q ss_pred ccEEEEcccccc----ccCc----------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 145 VDVIISEWMGYF----LLRE----------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 145 ~D~Ivs~~~~~~----l~~e----------~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
||.|+++..... .... . ....+|....++|||||+++-+.+++.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 999999765332 1100 0 123567778899999999998877654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-06 Score=87.39 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=72.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHH--HHHHHHcCCCC---cEEEEEcccccCC--CCCc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHA--RTLVKANNLQD---VVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g----~~~V~avD~s-~~~~~a--~~~~~~~~~~~---~v~~~~~d~~~~~--~~~~ 144 (391)
.++.+|||.|||+|.+.+.+++.. ..+++|+|++ .+++.| +.++..+.+.. ...+...|+.+.. ...+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 357899999999999999988763 2379999999 888888 55544433221 1355666766632 2278
Q ss_pred ccEEEEccccccccCc---------------------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 145 VDVIISEWMGYFLLRE---------------------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e---------------------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
||+||+++. |..... .....++..+.++|++||++.+...
T Consensus 400 FDVVIgNPP-Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPP-YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCB-CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCC-ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999999883 322110 0123456677889999998765433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-06 Score=80.77 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=84.5
Q ss_pred HHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH---cCC----CCcEEEEEc
Q 016320 64 DAYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA---NNL----QDVVEVIEG 134 (391)
Q Consensus 64 ~~~~~~i~~~~-~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~---~~~----~~~v~~~~~ 134 (391)
..|.+.+.... ...++++||-||.|.|.....+.+....+|+.||++ .+++.|++.... ..+ .++++++.+
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 34555554332 123568999999999999999999877899999999 899999987532 111 135899999
Q ss_pred ccccCC-----CCCcccEEEEcccccccc------Cc-chHHHHHHHHhccccCCeEEEcc
Q 016320 135 SVEDIV-----LPEKVDVIISEWMGYFLL------RE-SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 135 d~~~~~-----~~~~~D~Ivs~~~~~~l~------~e-~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|...+- ..++||+|+.+....... .. .-...+++.+++.|+|||+++..
T Consensus 270 Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 270 DCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 987642 226899999976432111 11 11246778889999999998754
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-06 Score=77.31 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=70.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEech----HHHH-----------HHHHHHHHc------
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEAT----KMSD-----------HARTLVKAN------ 123 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-------g~------~~V~avD~s----~~~~-----------~a~~~~~~~------ 123 (391)
+..+|||+|+|+|..++.+++. +. .+++++|.. +++. .|++.++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999987776543 22 379999964 2333 455555541
Q ss_pred ----CCC---CcEEEEEcccccC-C-CCC----cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 124 ----NLQ---DVVEVIEGSVEDI-V-LPE----KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 124 ----~~~---~~v~~~~~d~~~~-~-~~~----~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+. .+++++.+|+.+. + .+. .||+|+.+.+...-..+-.-..+++.+.++|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 121 2478999998874 2 222 799999876433222221235789999999999999884
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.5e-06 Score=75.56 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~D~Ivs 150 (391)
....++.+||||||++|.++..++.. |+++|+|+|+. .-.+. -..++..+++ .|.++.+ |+..++. .++|+|+|
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~-lV~~~~~~Dv~~l~~-~~~D~ivc 166 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWN-IVTMKSGVDVFYRPS-ECCDTLLC 166 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGG-GEEEECSCCTTSSCC-CCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCc-ceEEEeccCHhhCCC-CCCCEEEE
Confidence 44567789999999999999977665 88899999997 31100 0000122332 3889988 8877765 78999999
Q ss_pred ccccccccCcchH---HHHHHHHhccccCC-eEEEc
Q 016320 151 EWMGYFLLRESMF---DSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~---~~~l~~~~~~Lkpg-G~~i~ 182 (391)
+.-......+-+- -.+|+-+.++|+++ |.|++
T Consensus 167 DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 167 DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 8642222211111 12566667899988 66553
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=76.34 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=56.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
..+|.+||||||.+|.++..+++.|. +|+|||..+|..... .. .+|+++++|...+.++ .++|+|+|+..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----DT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----TT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----cC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 35789999999999999999999987 799999875543322 11 3499999999888766 68999999864
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.8e-06 Score=77.37 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~D~Ivs~~ 152 (391)
..++.+||||||++|.++..+++. ++..|+|+|+. .+...... ....+. +.+.+..+ |+..+. ++++|+|+|+.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~-~~~~DlVlsD~ 155 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP-TEPSDTLLCDI 155 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC-CCCcCEEeecC
Confidence 457789999999999999999975 77789999997 43111000 000011 11333322 333322 37899999987
Q ss_pred ccccccCcch---HHHHHHHHhccccCC-eEEEcc
Q 016320 153 MGYFLLRESM---FDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~---~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
.........+ ...+++-+.++|+|| |.|+.-
T Consensus 156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 5442111111 123467778999999 998853
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=71.44 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=64.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEc-ccccCCCCCcc
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEG-SVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~-d~~~~~~~~~~ 145 (391)
|.+..-..++.+||||||+.|.++..+++. +...|.|..+. .. . ....... .|+ +-++++++ |+.++. +.++
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv-~~i~~~~G~Df~~~~-~~~~ 140 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGW-NIVTMKSGVDVFYKP-SEIS 140 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTG-GGEEEECSCCGGGSC-CCCC
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCc-eEEEeeccCCccCCC-CCCC
Confidence 333333456899999999999999999986 22234454444 21 0 0000000 111 22566667 998864 3689
Q ss_pred cEEEEccccccccCcchHH---HHHHHHhccccCCe-EEEc
Q 016320 146 DVIISEWMGYFLLRESMFD---SVICARDRWLKPTG-VMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~---~~l~~~~~~LkpgG-~~i~ 182 (391)
|+|+|+.........-+.. .+++-+.++|+||| .|+.
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 9999987543222111111 14566678999999 7664
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=72.32 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=61.0
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC-Cc
Q 016320 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP-EK 144 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-~~ 144 (391)
+.+...++.++||.+||.|..+..+++.+. +|+|+|.+ .+++.|++ .+. ++++++++++.++. .+ ++
T Consensus 16 e~L~~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~ 89 (285)
T 1wg8_A 16 DLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVER 89 (285)
T ss_dssp HHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HhhCCCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCC
Confidence 334456788999999999999999999844 89999999 89998887 533 46999999998873 12 57
Q ss_pred ccEEEEcc
Q 016320 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivs~~ 152 (391)
+|.|+.++
T Consensus 90 vDgIL~DL 97 (285)
T 1wg8_A 90 VDGILADL 97 (285)
T ss_dssp EEEEEEEC
T ss_pred cCEEEeCC
Confidence 99999875
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=63.44 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCccc-HHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSG-ILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G-~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
+.+.+.|.+.. .++.+|||||||+| ..+..+++ .|. .|+|+|++ ..++ ++..|+.+..
T Consensus 23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~ 83 (153)
T 2k4m_A 23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPR 83 (153)
T ss_dssp HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCc
Confidence 34445555543 34579999999999 59999997 787 69999999 5333 7888888754
Q ss_pred CC--CcccEEEE
Q 016320 141 LP--EKVDVIIS 150 (391)
Q Consensus 141 ~~--~~~D~Ivs 150 (391)
+. +.||+|.+
T Consensus 84 ~~~Y~~~DLIYs 95 (153)
T 2k4m_A 84 MEIYRGAALIYS 95 (153)
T ss_dssp HHHHTTEEEEEE
T ss_pred ccccCCcCEEEE
Confidence 43 58999976
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.75 E-value=6e-05 Score=68.20 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=71.1
Q ss_pred hHhHHHHHHHHHh-cCCCCCCCEEEEECC------cccHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEE
Q 016320 60 RVRMDAYFNSIFQ-NKHHFQGKTVLDVGT------GSGILAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 60 ~~r~~~~~~~i~~-~~~~~~~~~VLDlGc------G~G~ls~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~ 130 (391)
-..|..+.+.+.. .+....+.+|||+|+ -.|. ..+.+.+.. .|+++|++++.. ..+ .
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~ 155 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--S 155 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--E
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--e
Confidence 3455566666643 233456799999997 4455 344444443 899999984321 112 4
Q ss_pred EEEcccccCCCCCcccEEEEccccccc---cC-----cchHHHHHHHHhccccCCeEEEc
Q 016320 131 VIEGSVEDIVLPEKVDVIISEWMGYFL---LR-----ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 131 ~~~~d~~~~~~~~~~D~Ivs~~~~~~l---~~-----e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
++++|...+....+||+|+|+.....- .. ....+.+++-+.+.|+|||.|+.
T Consensus 156 ~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 156 TLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp EEESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 599998877666899999997632211 11 12356777778899999999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.70 E-value=9e-05 Score=68.71 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=42.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN 124 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~ 124 (391)
.++..|||++||+|..++.+++.|. +++|+|++ .+++.|+++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999987 79999999 99999999987643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00026 Score=67.45 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCEEEEECCcccHHHHHHHHc------------C----CCeEEEEech--HHHHHHHHHHHH----------cCCCCc--
Q 016320 79 GKTVLDVGTGSGILAIWSAQA------------G----ARKVYAVEAT--KMSDHARTLVKA----------NNLQDV-- 128 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~------------g----~~~V~avD~s--~~~~~a~~~~~~----------~~~~~~-- 128 (391)
..+|+|+|||+|..++.++.. | .-+|+.-|+- +.-...+..... .+....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999988876321 1 1257777765 222222221110 000000
Q ss_pred -EEEEEcccccCCCC-CcccEEEEccccccccCc-----------------------------------chHHHHHHHHh
Q 016320 129 -VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE-----------------------------------SMFDSVICARD 171 (391)
Q Consensus 129 -v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e-----------------------------------~~~~~~l~~~~ 171 (391)
+.-+.+.+..-.+| +++|+|+|...-+.+... .++..+|+.+.
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333222344 899999996543333211 14566788999
Q ss_pred ccccCCeEEEcccc
Q 016320 172 RWLKPTGVMYPSHA 185 (391)
Q Consensus 172 ~~LkpgG~~i~~~~ 185 (391)
+.|+|||.+++...
T Consensus 213 ~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRGGAMFLVCL 226 (374)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 99999999986633
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00055 Score=68.58 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C----------CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G----------ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE 133 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g----------~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~ 133 (391)
.+.+.+...++.+|+|-.||||.+.+.+.+. . ...++|+|++ .+...|+.++...+... ..+..
T Consensus 208 lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~ 286 (530)
T 3ufb_A 208 FMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDP 286 (530)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEEC
T ss_pred HHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-ccccc
Confidence 3334444456779999999999988776653 1 1259999999 88999998888777754 46777
Q ss_pred cccccCCC-----CCcccEEEEccc
Q 016320 134 GSVEDIVL-----PEKVDVIISEWM 153 (391)
Q Consensus 134 ~d~~~~~~-----~~~~D~Ivs~~~ 153 (391)
+|....+. ..+||+|++++.
T Consensus 287 ~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 287 ENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp SCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred cccccCchhhhcccccceEEEecCC
Confidence 88765322 157999999874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=66.49 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--- 139 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--- 139 (391)
..|.+.|... .+..+||+-+|||.+++.+.+. ..+++.+|.+ ..++..+++++. .++++++..|....
T Consensus 81 ~~yf~~l~~~----n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 81 LEYISVIKQI----NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HHHHHHHHHH----SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHh----cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence 4666666652 3556899999999999999984 5799999999 777777777654 35699999997542
Q ss_pred --CCCCcccEEEEccccccccCcchHHHHHHHHh--ccccCCeEEEc
Q 016320 140 --VLPEKVDVIISEWMGYFLLRESMFDSVICARD--RWLKPTGVMYP 182 (391)
Q Consensus 140 --~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~--~~LkpgG~~i~ 182 (391)
+.+++||+|+.++. |.. ......+++.+. ..+.|+|++++
T Consensus 153 l~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HCSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hcCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEEE
Confidence 22367999999883 332 123445554443 35678998774
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.002 Score=61.49 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCEEEEECCcccHHHHHHHHc--------------C----CCeEEEEech--HHHHHH-------HHHHHHcCCCCcEEE
Q 016320 79 GKTVLDVGTGSGILAIWSAQA--------------G----ARKVYAVEAT--KMSDHA-------RTLVKANNLQDVVEV 131 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~--------------g----~~~V~avD~s--~~~~~a-------~~~~~~~~~~~~v~~ 131 (391)
.-+|+|+||++|..++.+... + .-+|+.-|+. +.-... +...+..+-....-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999988877654 0 1157777753 221111 111122332111355
Q ss_pred EEccccc---CCCC-CcccEEEEccccccccCc------------------------------------chHHHHHHHHh
Q 016320 132 IEGSVED---IVLP-EKVDVIISEWMGYFLLRE------------------------------------SMFDSVICARD 171 (391)
Q Consensus 132 ~~~d~~~---~~~~-~~~D~Ivs~~~~~~l~~e------------------------------------~~~~~~l~~~~ 171 (391)
+.+.... -.+| +++|+|+|...-+.+... .++..+|+.+.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554333 2344 899999995533332211 12233477889
Q ss_pred ccccCCeEEEcc
Q 016320 172 RWLKPTGVMYPS 183 (391)
Q Consensus 172 ~~LkpgG~~i~~ 183 (391)
+.|+|||++++.
T Consensus 213 ~eL~pGG~mvl~ 224 (384)
T 2efj_A 213 EELISRGRMLLT 224 (384)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHhccCCeEEEE
Confidence 999999999865
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00085 Score=60.78 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=41.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL 125 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~ 125 (391)
.++..|||..||+|..++.+++.|. +++|+|++ .+++.|+++++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 6789999999999999999999987 79999999 899999999887653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00096 Score=63.03 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=58.5
Q ss_pred hhcCChHhHHHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016320 55 EMLSDRVRMDAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
..|.|..-.+...+++.-.. ...++..|||||.|.|.++..+++. .+++|++||++ .++...++.. . .++++
T Consensus 33 nFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ 108 (353)
T 1i4w_A 33 KYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQ 108 (353)
T ss_dssp CCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCE
T ss_pred CccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEE
Confidence 35777765555444442110 0014589999999999999999986 45689999999 8888887765 2 24599
Q ss_pred EEEcccccCC
Q 016320 131 VIEGSVEDIV 140 (391)
Q Consensus 131 ~~~~d~~~~~ 140 (391)
++++|+.++.
T Consensus 109 ii~~D~l~~~ 118 (353)
T 1i4w_A 109 ILKRDPYDWS 118 (353)
T ss_dssp EECSCTTCHH
T ss_pred EEECCccchh
Confidence 9999996653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0038 Score=58.06 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=60.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----- 140 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 140 (391)
.+...+...++.+++|..||.|..+..+++. + ..+|+|+|.+ .+++.|+ ++ ..++++++++++.++.
T Consensus 48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHh
Confidence 3444555678899999999999999999886 3 3589999999 8888774 22 2467999999988862
Q ss_pred --CCCcccEEEEcc
Q 016320 141 --LPEKVDVIISEW 152 (391)
Q Consensus 141 --~~~~~D~Ivs~~ 152 (391)
..+++|.|+.++
T Consensus 123 ~g~~~~vDgILfDL 136 (347)
T 3tka_A 123 RDLIGKIDGILLDL 136 (347)
T ss_dssp TTCTTCEEEEEEEC
T ss_pred cCCCCcccEEEECC
Confidence 123699999865
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=62.33 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=62.1
Q ss_pred CEEEEECCcccHHHHHHHHc------------CC-----CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---ccc
Q 016320 80 KTVLDVGTGSGILAIWSAQA------------GA-----RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VED 138 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~------------g~-----~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~ 138 (391)
-+|+|+||++|..++.+... +. -+|+..|.. .....+-+.+....-..+.-|+.+. +..
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 57999999999776554332 21 268888976 5444443333221100012444443 333
Q ss_pred CCCC-CcccEEEEccccccccC------------------------------cchHHHHHHHHhccccCCeEEEcc
Q 016320 139 IVLP-EKVDVIISEWMGYFLLR------------------------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~-~~~D~Ivs~~~~~~l~~------------------------------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
-.+| +++|+|+|...-+.+.. +.++..+|+.+.+.|+|||.+++.
T Consensus 133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3445 89999999543232211 124566799999999999999865
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0033 Score=60.04 Aligned_cols=68 Identities=22% Similarity=0.145 Sum_probs=53.4
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~Iv 149 (391)
.+||||.||.|.+++-+.++|+..|.++|++ .+++..+.+. .+ ..++++|+.++.. ...+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PR-SLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TT-SEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CC-CceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 4799999999999999999999888999999 6665555443 22 6788999988731 36799999
Q ss_pred Eccc
Q 016320 150 SEWM 153 (391)
Q Consensus 150 s~~~ 153 (391)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8553
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0061 Score=57.04 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=52.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
.+.+|||+.||.|.+++.+.++|++.|.++|++ ..++..+.+.... . ++|+.++... ..+|+|+..+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 457899999999999999999999889999999 7777767665321 1 6888887432 4699999854
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=61.36 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=53.4
Q ss_pred CEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~ 152 (391)
.+|||+.||.|.+++.+.++| ++.|+++|++ .+++..+.+... ..++.+|+.++... ..+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 479999999999999999998 5589999999 777776665421 45788999887421 2699999865
Q ss_pred c
Q 016320 153 M 153 (391)
Q Consensus 153 ~ 153 (391)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.015 Score=54.52 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC---------------
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--------------- 124 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--------------- 124 (391)
.|...+.+.+.+.+...+...|+.||||.......+... +..+++-||.-++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 344455555544432234578999999999988888764 2225666666567777777666642
Q ss_pred -----CCCcEEEEEcccccCC--------C--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 125 -----LQDVVEVIEGSVEDIV--------L--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 -----~~~~v~~~~~d~~~~~--------~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
..++..++..|+++.. . +....++++|.+...+..+ ....+++.+.... |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEE
Confidence 1356899999998731 1 2567899999876666554 4667777776655 677665
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=59.14 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=61.6
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----C-CC
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----V-LP 142 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~ 142 (391)
+.....++.+||.+|+|. |.++..+|+. |+++|+++|.+ +.++.+++. |.. .++..+-.++ . .+
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHhcC
Confidence 344556789999999986 8888887775 88779999998 666666543 432 2232211111 0 11
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+|+|+-.. + ....+....++|+++|+++..
T Consensus 257 gg~D~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 257 GGVNFALEST-G--------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp SCEEEEEECS-C--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECC-C--------CHHHHHHHHHHHhcCCEEEEe
Confidence 3699998521 1 123456667889999998754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.022 Score=55.00 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccHHHHHHH-Hc-C-CCeEEEEech-HHHHHHHHHHHH--cCCC-CcEEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSA-QA-G-ARKVYAVEAT-KMSDHARTLVKA--NNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a-~~-g-~~~V~avD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~ 138 (391)
.++.+|+|+|++.|..+..++ +. + ..+|+++|++ ...+..+++++. |+.. +++++++.-+-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 467899999999999999887 44 3 3689999999 889999999988 4333 568888765544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=56.94 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~~ 144 (391)
...++.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.+++. |.. .++..+-.+ +.....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 456789999999975 7777777775 88789999998 666666543 432 223211111 111247
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|+-.. +. .......+++.+.+.++++|.++..
T Consensus 283 ~D~vid~~-g~---~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 283 AKLFLEAT-GV---PQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSEEEECS-SC---HHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCEEEECC-CC---cHHHHHHHHHHHHhccCCCcEEEEe
Confidence 99998521 11 0012233333333445999998854
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.023 Score=53.04 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=51.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
+||||-||.|.+++-+.++|...|.++|++ .+++..+.+. + -+++.+|+.++... .++|+|+.-+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecC
Confidence 699999999999999999999888999999 6555544432 2 36788999988543 5799998743
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.1 Score=48.00 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=63.8
Q ss_pred CCEEEEECCcccHHHHHHHH----cCC-C--eEEEEech----------HHHHHHHHHHHHcC-C-CC--cEEEEEcccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQ----AGA-R--KVYAVEAT----------KMSDHARTLVKANN-L-QD--VVEVIEGSVE 137 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~----~g~-~--~V~avD~s----------~~~~~a~~~~~~~~-~-~~--~v~~~~~d~~ 137 (391)
.-+|||+|-|+|+..+.+.+ .+. . +++.+|.. ...+..+....... + .+ .+++..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 36899999999986544332 232 2 46777751 11222332222211 0 11 2567889987
Q ss_pred cC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 138 DI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 138 ~~--~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+. .++ .++|+|+-+.+..--..+---+.+++.+.++++|||++.-
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 64 233 4799999887654443332346889999999999999873
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0073 Score=56.98 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=60.5
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCC
Q 016320 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~ 142 (391)
.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .|.. .++..+-.+ ....
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKATDG 233 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHcCC
Confidence 34556789999999986 7888888886 77689999998 66666654 3432 233211111 1112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+-.. + . ...+....++|+++|.++..
T Consensus 234 ~g~D~v~d~~-g----~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 234 KGVDKVVIAG-G----D----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CCEEEEEECS-S----C----TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEEEe
Confidence 4699998521 1 1 12355566789999998744
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.075 Score=50.90 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=61.6
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CC
Q 016320 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~ 141 (391)
.....++.+||.+|+|. |.++..+|+. |+.+|+++|.+ +.++.++ +.|. .++..+-.++ ..
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa----~~i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DAGF----ETIDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TTTC----EEEETTSSSCHHHHHHHHHS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCC----cEEcCCCcchHHHHHHHHhC
Confidence 34556889999999986 8888888875 88789999998 6666554 3443 2332211111 11
Q ss_pred CCcccEEEEcccccccc-C-----cchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLL-R-----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~-~-----e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+|+-.. +.-.. . .......+....++|+++|+++..
T Consensus 252 g~g~Dvvid~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 252 KPEVDCGVDAV-GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSCEEEEEECS-CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCEEEECC-CCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 13699998522 21100 0 000122456667889999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.052 Score=51.23 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-----cccc----cCCC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-----GSVE----DIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~-----~d~~----~~~~ 141 (391)
....++.+||-+|+|. |.++..+|+. |+++|+++|.+ +-++.+++. .. ..+.+.. .++. +..-
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHhC
Confidence 3456788999999976 7788777776 88679999999 777777765 21 1133321 1111 1111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+|+-.. + . ...+....++|+++|+++..
T Consensus 250 g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 250 GIEPAVALECT-G----V----ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SCCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 35799998521 1 1 22455566789999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.033 Score=52.88 Aligned_cols=94 Identities=26% Similarity=0.316 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE---ccccc-C-----CC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE---GSVED-I-----VL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~---~d~~~-~-----~~ 141 (391)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .|.. .++. .|..+ + ..
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhhhcc
Confidence 3456789999999976 7777777775 88789999999 66666554 3433 2222 12111 0 11
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.+|+|+-.. +. ...+....++|+++|.++..
T Consensus 251 ~gg~Dvvid~~-G~--------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECA-GV--------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-CC--------HHHHHHHHHHhccCCEEEEE
Confidence 24799998521 11 23456666789999998754
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.16 Score=46.86 Aligned_cols=121 Identities=9% Similarity=0.031 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEcccccC
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~ 139 (391)
|...+.+++...+.. ....|++||||-=.....+......+|+=||.-.+++..++.+...+. ..+..++..|+++
T Consensus 87 Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d- 164 (310)
T 2uyo_A 87 RTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ- 164 (310)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-
T ss_pred HHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-
Confidence 444444445444322 225699999997665444432112378888855788888888875442 3558899999986
Q ss_pred CC----------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 140 VL----------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 ~~----------~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.. +...-+++++.+.+++..+ ....+++.+...+.||+.++++..
T Consensus 165 ~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 165 DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECC
T ss_pred hHHHHHHhccCCCCCCEEEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEec
Confidence 21 1345677888776666554 567888888888889998887754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=47.73 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
...++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-++.+++ .|.. .++ .+...+. +.+|+|+-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~~--~~~D~vid~ 241 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQCK--EELDFIIST 241 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGCC--SCEEEEEEC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHHh--cCCCEEEEC
Confidence 567889999999986 7777777775 77 89999998 66665543 4543 222 3433332 479999852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. + ... .+....++|+++|.++..
T Consensus 242 ~-g----~~~----~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 242 I-P----THY----DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp C-C----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred C-C----cHH----HHHHHHHHHhcCCEEEEE
Confidence 1 1 111 244556789999998854
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.052 Score=51.15 Aligned_cols=93 Identities=24% Similarity=0.259 Sum_probs=59.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---ccc----CC--CC
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VED----IV--LP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~----~~--~~ 142 (391)
...++.+||.+|+|. |.++..+|+. |+++|+++|.+ +-++.++ +.|.. .++..+ ..+ +. .+
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGAD---LVLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS---EEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC---EEEcCcccccchHHHHHHHHhC
Confidence 456789999999986 7888777775 77789999998 6555554 34543 223222 111 10 01
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+-.. + . ...+....++|+++|.++..
T Consensus 241 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 241 CKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp SCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 4699998522 1 1 22355556789999998754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.1 Score=48.04 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=58.4
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
+.....++.+||-+|+|. |.++..+|++ |+ +|++++ + +-++.+++ .|.. .++ .|..++ ++.+|+|
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d~~~v--~~g~Dvv 203 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR---HLY-REPSQV--TQKYFAI 203 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE---EEE-SSGGGC--CSCEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC---EEE-cCHHHh--CCCccEE
Confidence 445567889999999974 7788777776 88 899999 8 66666654 3422 223 243333 5789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+-. .+. + . +....++|+++|.++..
T Consensus 204 ~d~-~g~----~----~-~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDA-VNS----Q----N-AAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC-----------------TTGGGEEEEEEEEEE
T ss_pred EEC-CCc----h----h-HHHHHHHhcCCCEEEEE
Confidence 841 111 1 1 24456889999998755
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0072 Score=56.46 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
..++..|||--||+|..+..+.+.|. +.+++|++ ...+.++++++..+.. ...+..|+.++.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 35789999999999999999999986 79999999 8889998887765543 444555555543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.27 Score=44.01 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-------C-CCeEEEEech-HH------------------------HHHHHHHHH-
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQA-------G-ARKVYAVEAT-KM------------------------SDHARTLVK- 121 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~-------g-~~~V~avD~s-~~------------------------~~~a~~~~~- 121 (391)
..+ ..|+|+|+-.|..++.+++. + .++|+++|.- .+ .+..++.++
T Consensus 68 ~vp-G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 68 DVP-GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp TSC-SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred CCC-CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 344 47999999999877776542 1 3689999921 11 111222221
Q ss_pred -----HcCC-CCcEEEEEcccccCC------CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 122 -----ANNL-QDVVEVIEGSVEDIV------LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 122 -----~~~~-~~~v~~~~~d~~~~~------~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+. .++|+++.|++.+.- .+ .++|+|..+. +. .+ .....++.+...|+|||++++...
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~---Y~-~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL---YE-PTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC---HH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc---cc-hHHHHHHHHHHHhCCCcEEEEcCC
Confidence 2343 477999999997741 23 5799999865 21 22 234567888899999999998875
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=54.99 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=61.5
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc--cccC-----
Q 016320 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS--VEDI----- 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~----- 139 (391)
+.+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.|+ +.|.. .++... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc---EEEccccCchhHHHHHH
Confidence 33444566789999999975 7788777776 88789999988 6666554 34543 222211 0111
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..++.+|+|+-.. + -...+....++|+++ |+++..
T Consensus 258 ~~~~gg~D~vid~~-g--------~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 258 DLTDGGVDYSFECI-G--------NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHTTSCBSEEEECS-C--------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HhcCCCCCEEEECC-C--------CHHHHHHHHHHhhccCCEEEEE
Confidence 0124799998521 1 123456667889996 988754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.077 Score=48.71 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=51.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCe--EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-----CcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARK--VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-----EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~--V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~D~Iv 149 (391)
...+|+|+-||.|.+++.+.++|... |.++|++ ..++..+.+. .+ ..++.+|+.++... ..+|+|+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~-~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QG-KIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TT-CEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CC-CceeCCChHHccHHHhcccCCcCEEE
Confidence 45689999999999999999999875 6999999 5555444432 12 46788999887421 3699999
Q ss_pred Ecc
Q 016320 150 SEW 152 (391)
Q Consensus 150 s~~ 152 (391)
..+
T Consensus 89 ggp 91 (295)
T 2qrv_A 89 GGS 91 (295)
T ss_dssp ECC
T ss_pred ecC
Confidence 743
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.06 Score=50.32 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----CCCCcc
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----VLPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~ 145 (391)
....++.+||-+|+|. |.++..++++ |+ +|+++|.+ +.++.+++ .|.. .++..+-.++ ...+.+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCCC
Confidence 3556889999999986 8888888876 78 89999998 66665543 4433 2222211111 001368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+-.. + ....++...+.|+++|.++..
T Consensus 234 d~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 234 HGVLVTA-V--------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEESS-C--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEEeC-C--------CHHHHHHHHHHhccCCEEEEe
Confidence 8887522 1 123466667889999998754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.095 Score=48.83 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCC--CeE-EEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEE
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGA--RKV-YAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIIS 150 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~--~~V-~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs 150 (391)
.-+++|+.||.|.+++-+.++|. ..| .++|++ .+++..+.+.. + .++++|+.++... ..+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~--~~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----E--EVQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----C--CCBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----C--CcccCChhhcCHHHhccCCCCEEEe
Confidence 35899999999999999999984 667 899999 66666665542 1 1567888887432 26999997
Q ss_pred cc
Q 016320 151 EW 152 (391)
Q Consensus 151 ~~ 152 (391)
.+
T Consensus 83 gp 84 (327)
T 3qv2_A 83 SP 84 (327)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.12 Score=49.02 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=57.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc----cccCCCCCcccE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS----VEDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~~~~~~~D~ 147 (391)
...++.+||.+|+|. |.++..+|+. |+ +|++++.+ +.++.+++ .|.. .++... +.++. ..+|+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~--~g~Dv 260 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL--KSFDF 260 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT--TCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh--cCCCE
Confidence 456789999999985 7777777775 77 69999988 66666654 3432 222211 11222 57999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+... +. .. .+....+.|+++|.++..
T Consensus 261 vid~~-g~----~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTV-AA----PH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECC-SS----CC----CHHHHHTTEEEEEEEEEC
T ss_pred EEECC-CC----HH----HHHHHHHHhccCCEEEEe
Confidence 98522 11 11 234456789999998754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.029 Score=52.54 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=57.8
Q ss_pred hcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016320 72 QNKHHFQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG--~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~ 140 (391)
+.....++++||-+|+| .|.++..+++. |+ +|++++.+ +-++.+++ .+.. .++...-.++ .
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~---~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA---YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc---EEEeCCcccHHHHHHHHh
Confidence 44556788999999987 46777766665 88 89999998 76666665 2332 2222111111 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+|+|+... +. ...... .++|+++|.++..
T Consensus 210 ~~~g~Dvvid~~-g~--------~~~~~~-~~~l~~~G~iv~~ 242 (340)
T 3gms_A 210 NGIGADAAIDSI-GG--------PDGNEL-AFSLRPNGHFLTI 242 (340)
T ss_dssp TTSCEEEEEESS-CH--------HHHHHH-HHTEEEEEEEEEC
T ss_pred CCCCCcEEEECC-CC--------hhHHHH-HHHhcCCCEEEEE
Confidence 124799998622 11 122222 3689999998754
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.054 Score=50.70 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=49.9
Q ss_pred CEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~ 152 (391)
-+++|+.||.|.+++-+.++|. ..|.++|++ ..++..+.+.. + ..++.+|+.++... ..+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCCHHHhccCCCCEEEecC
Confidence 3799999999999999999886 568999999 55554444432 1 45678899887532 3699999743
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.038 Score=52.40 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=60.1
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.++ +.|.. .++..+ +.+ + .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc---EEEecccccchHHHHHHHH
Confidence 334556789999999875 7777777775 88789999988 6666554 34543 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 258 t~gg~Dvvid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 258 TNGGVDYAVECA-GR--------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-CC--------HHHHHHHHHHHhcCCCEEEEE
Confidence 114799998521 11 23455666889999 988744
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.059 Score=50.97 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCCEEEEEC-Ccc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--c----cccCCCCCcccE
Q 016320 78 QGKTVLDVG-TGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--S----VEDIVLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlG-cG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d----~~~~~~~~~~D~ 147 (391)
++.+||-+| +|. |.++..+|++ +..+|++++.+ +-++.+++ .|.. .++.. + +.++ ..+.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~-~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAAL-GLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTT-CSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHh-cCCCceE
Confidence 678999998 664 8889889986 55589999998 66666543 4432 22221 1 1112 2257999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+-.. + -...+....++|+++|.++..
T Consensus 243 vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTT-H--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECS-C--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEECC-C--------chhhHHHHHHHhcCCCEEEEE
Confidence 88521 1 123456667789999998854
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.032 Score=52.76 Aligned_cols=94 Identities=22% Similarity=0.220 Sum_probs=59.1
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CC
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VL 141 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~ 141 (391)
+.....++.+||-+|+|. |.++..+++. |+ +|++++.+ +-++.+++ .|.. .++..+..++ ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYALTG 254 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHHhC
Confidence 444566889999999886 7777777775 77 89999998 66666554 3432 2332221111 11
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+|+-.. + .. . +....+.|+++|.++..
T Consensus 255 g~g~D~vid~~-g----~~-~----~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 255 DRGADHILEIA-G----GA-G----LGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TCCEEEEEEET-T----SS-C----HHHHHHHEEEEEEEEEE
T ss_pred CCCceEEEECC-C----hH-H----HHHHHHHhhcCCEEEEE
Confidence 24799998522 2 11 2 34445678999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.034 Score=52.21 Aligned_cols=94 Identities=29% Similarity=0.275 Sum_probs=58.0
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCC
Q 016320 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~ 142 (391)
.... ++.+||-+|+|. |.++..+++. |+++|++++.+ +.++.+++ .|.. .++..+-.+ +...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHcCC
Confidence 3445 889999999964 6777777765 77679999998 66666553 3332 222211111 1112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+... +. ...+....++|+++|.++..
T Consensus 235 ~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 235 NGVDVFLEFS-GA--------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp SCEEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 3699998522 11 23455566789999988754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.053 Score=51.39 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=60.0
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+++|++++.+ +.++.+++ .|.. .++... +.+ + .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHHHH
Confidence 334556789999999875 7777777775 88789999988 66666654 3432 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 257 ~~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 257 TDGGVDYSFECI-GN--------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-Cc--------HHHHHHHHHhhccCCcEEEEE
Confidence 113799998521 11 23456667889999 998754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.045 Score=51.96 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=59.7
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-CC--
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-IV-- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~~-- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.++ +.|.. .++..+ +.+ +.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc---EEEccccccchHHHHHHHH
Confidence 334556789999999875 7777777775 77689999988 6566554 34442 222211 111 00
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 262 ~~~g~Dvvid~~-G~--------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 262 TAGGVDYSLDCA-GT--------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HTSCBSEEEESS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCccEEEECC-CC--------HHHHHHHHHHhhcCCCEEEEE
Confidence 013699998521 11 23456667889999 998754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.13 Score=43.70 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=55.1
Q ss_pred hcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------
Q 016320 72 QNKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------- 139 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc--G~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------- 139 (391)
+.....++++||..|+ |.|.....+++ .|+ +|++++.+ +.++.++ ..+.. .++ |..+.
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~----~~g~~---~~~--d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVG--DSRSVDFADEILE 101 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEE--ETTCSTHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCC---EEe--eCCcHHHHHHHHH
Confidence 3344567899999995 34655555444 487 79999998 6555443 23432 122 22111
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....+|+++... + . ..+....+.|+++|+++..
T Consensus 102 ~~~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 102 LTDGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HTTTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEEE
Confidence 1124699998632 2 1 2355666889999998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.051 Score=51.56 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+.+|+++|.+ +.++.+++ .|.. .++... +.+ + .
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 334556789999999875 7777777775 77689999988 66665543 4442 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 259 ~~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 259 TNGGVDFSLECV-GN--------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HTSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-CC--------HHHHHHHHHHhhcCCcEEEEE
Confidence 013699998522 11 23456667889999 988754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.17 Score=47.99 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=58.4
Q ss_pred CC-CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---ccc-------C
Q 016320 74 KH-HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VED-------I 139 (391)
Q Consensus 74 ~~-~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~-------~ 139 (391)
.. ..++.+||-+|+|. |.++..+|+. |+.+|++++.+ +-++.++ +.|.. .++..+ -.+ +
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD---LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc---EEEeccccCcchHHHHHHHH
Confidence 44 56789999999774 7777777776 75589999988 6666554 34542 233322 111 1
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....+|+|+-.. + .. ..+....++|+++|.++..
T Consensus 263 ~~g~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 263 THGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 1123699998522 1 11 1344556788999998754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.054 Score=50.28 Aligned_cols=94 Identities=26% Similarity=0.254 Sum_probs=58.3
Q ss_pred hcCCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016320 72 QNKHHFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlG-cG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~ 140 (391)
+.....++++||-.| +| .|.++..+++. |+ +|++++.+ +-++.+++ .|.. .++..+-.++ .
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHh
Confidence 344566789999998 34 47777777765 88 79999998 66666654 3332 2222211111 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+|+|+... +. ..+....+.|+++|.++..
T Consensus 206 ~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 206 DGKKCPVVYDGV-GQ---------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTCCEEEEEESS-CG---------GGHHHHHTTEEEEEEEEEC
T ss_pred CCCCceEEEECC-Ch---------HHHHHHHHHhcCCCEEEEE
Confidence 124799998632 21 1244556789999998754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.13 Score=48.38 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cC--CCCCcccE
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DI--VLPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~D~ 147 (391)
....++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-++.+++ .|.. .++..+-. ++ ...+.+|+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHhhcCCCE
Confidence 3456789999999864 7777777775 88 69999988 66666654 3432 22322111 11 11147999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+... +.. .. ..+....++|+++|.++..
T Consensus 247 vid~~-g~~--~~----~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCA-SSL--TD----IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECC-SCS--TT----CCTTTGGGGEEEEEEEEEC
T ss_pred EEECC-CCC--cH----HHHHHHHHHhcCCCEEEEe
Confidence 98522 210 01 1234456789999998754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.11 Score=48.78 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=55.4
Q ss_pred CCCEEEEE-CCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCcccE
Q 016320 78 QGKTVLDV-GTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDl-GcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~~~~~~~~D~ 147 (391)
++.+||-+ |+|. |.++..+++. |+ +|++++.+ +-++.+++ .|.. .++..+ +.+. ....+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~-~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---IVLNHKESLLNQFKTQ-GIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---EEECTTSCHHHHHHHH-TCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEEECCccHHHHHHHh-CCCCccE
Confidence 78999999 4554 7777777775 77 89999998 66666655 3432 222111 1111 2257999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+... + -...+....++|+++|.++..
T Consensus 221 v~d~~-g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 221 VFCTF-N--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEESS-C--------HHHHHHHHHHHEEEEEEEEES
T ss_pred EEECC-C--------chHHHHHHHHHhccCCEEEEE
Confidence 98521 1 123456666789999998643
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.02 Score=53.71 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=56.8
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---c----ccCCCC
Q 016320 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---V----EDIVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~----~~~~~~ 142 (391)
.... ++.+||-+|+|. |.++..+|+. |+++|++++.+ +-++.+++. . + .++..+ + .++. .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-~ 229 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-G 229 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-S
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-C
Confidence 4445 889999999864 7777777765 77579999998 655555432 1 1 222211 1 1111 3
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+... +. ...+....++|+++|.++..
T Consensus 230 ~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 230 SGVEVLLEFS-GN--------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCEEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 4699998522 11 12355566789999988754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.82 E-value=0.063 Score=50.90 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=59.2
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016320 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+++|++++.+ +.++.++ +.|.. .++..+ +.+ + .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc---eEecccccchhHHHHHHHH
Confidence 334556789999999875 7777777775 77689999988 6666554 34432 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 258 ~~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 258 SNGGVDFSFEVI-GR--------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHHBCTTTCEEEEC
T ss_pred hCCCCcEEEECC-CC--------HHHHHHHHHHhhcCCcEEEEe
Confidence 113799998522 11 23355566789999 988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.13 Score=47.96 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc--ccc----CCCCCcc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS--VED----IVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~~----~~~~~~~ 145 (391)
...++.+||-+|+|. |.++..+|++ |..+|+++|.+ +-++.+++ .|.. .++..+ ..+ +.....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCCcHHHHHHHHhCCCCC
Confidence 356789999999976 7888888875 56689999999 66666543 4543 222221 111 1111379
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+-.. + . ...+....++|+++|.++..
T Consensus 241 d~v~d~~-G----~----~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFV-G----A----QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 9998521 1 1 23466667789999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.18 Score=47.32 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=57.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccC----C--C---
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDI----V--L--- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~----~--~--- 141 (391)
...++.+||-+|+|. |.++..+++. |+ +|++++.+ +.++.++ ..|.. .++..+- .++ . .
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~---~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK----NCGAD---VTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH----HTTCS---EEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH----HhCCC---EEEcCcccccHHHHHHHHhccc
Confidence 456789999999875 7777777775 77 59999988 6666554 34543 2222110 111 0 1
Q ss_pred -CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 -PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+|+... +. ...+....++|+++|.++..
T Consensus 237 ~g~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 237 IGDLPNVTIDCS-GN--------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SSSCCSEEEECS-CC--------HHHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 24699998522 11 12355556789999998754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.25 Score=45.80 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=56.4
Q ss_pred hcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---C-----
Q 016320 72 QNKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---I----- 139 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc--G~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~----- 139 (391)
+.....++++||..|+ |.|.....+++ .|+ +|++++.+ +.++.++ ..+.. . ++ |..+ +
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~----~~g~~--~-~~--d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFD--A-AF--NYKTVNSLEEALK 208 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS--E-EE--ETTSCSCHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH----hcCCc--E-EE--ecCCHHHHHHHHH
Confidence 4445567899999998 44666555555 488 89999998 6665553 23432 1 22 2221 1
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+.+|+++... +. ..+....+.|+++|.++..
T Consensus 209 ~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 209 KASPDGYDCYFDNV-GG---------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCeEEEECC-Ch---------HHHHHHHHHHhcCCEEEEE
Confidence 0114699998633 11 1355666889999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.78 Score=43.43 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEccccc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.+..||.|+.+.|-++..++.. .++.+.-| -.....+.+++.|++.+. +++... .+ .++..+|+|+.-+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~l--- 108 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKV--- 108 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEEC---
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEc---
Confidence 4467999999999999888754 35555445 444567788999998753 666532 22 3357899998633
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016320 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
......+...+..+...|++|+.++.
T Consensus 109 -pk~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 109 -PKTLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp -CSCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 22234466778888899999998763
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.21 Score=46.58 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=58.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---ccccC----CCCC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SVEDI----VLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~----~~~~ 143 (391)
....++.+||-.|+|. |.++..++++ |+..++++|.+ +-++.|+ +.|.. .++.. +..+. .-..
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~---~~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM---QTFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS---EEEETTTSCHHHHHHHHGGGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe---EEEeCCCCCHHHHHHhhcccC
Confidence 3456889999999986 6666666665 88788999998 6555554 44543 22322 11111 1114
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+|+... + ....++...++|+++|.++..
T Consensus 229 g~d~v~d~~-G--------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETA-G--------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECS-C--------SHHHHHHHHHHCCTTCEEEEC
T ss_pred Ccccccccc-c--------ccchhhhhhheecCCeEEEEE
Confidence 578877421 1 123455566789999998754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.047 Score=50.89 Aligned_cols=94 Identities=26% Similarity=0.233 Sum_probs=57.3
Q ss_pred hcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016320 72 QNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~ 140 (391)
+.....++++||-+|+ | .|.++..+++. |+ +|++++.+ +-++.+++ .|.. .++..+-.++ .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT 213 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh
Confidence 3345678899999994 3 47777766665 77 79999998 65655543 3432 2232211111 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+|+|+... +. ..+....+.|+++|.++..
T Consensus 214 ~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 214 NGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEEE
Confidence 125799998632 21 1244455679999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.056 Score=50.41 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=59.3
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016320 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------ 139 (391)
+.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +-++.+. +..+.. .++...-.++
T Consensus 141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLKR 213 (336)
T ss_dssp HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHHH
Confidence 434455678899999998 347777666665 78 89999988 6555442 233432 2222111111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+.+|+|+... +. ..+....+.|+++|.++..
T Consensus 214 ~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 214 ECPKGIDVFFDNV-GG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred hcCCCceEEEECC-Cc---------chHHHHHHHHhhCCEEEEE
Confidence 0135699998632 11 2466667899999998754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.11 Score=47.55 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=41.3
Q ss_pred cEEEEEcccccC-C-CC-CcccEEEEccccccccC---------------c---chHHHHHHHHhccccCCeEEEcccce
Q 016320 128 VVEVIEGSVEDI-V-LP-EKVDVIISEWMGYFLLR---------------E---SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 128 ~v~~~~~d~~~~-~-~~-~~~D~Ivs~~~~~~l~~---------------e---~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++++++|+.+. . ++ ++||+|++++. |.... + ..+..++..+.++|+|||.+++....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPP-Y~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPP-YWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCC-CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCC-CCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 479999999884 2 33 79999999884 32210 0 11345677889999999998876554
Q ss_pred e
Q 016320 187 M 187 (391)
Q Consensus 187 ~ 187 (391)
.
T Consensus 100 ~ 100 (297)
T 2zig_A 100 V 100 (297)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.26 Score=50.82 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc----------CC---CeEEEEec---h-HHHHH-----------HHHHHHHcC-----
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA----------GA---RKVYAVEA---T-KMSDH-----------ARTLVKANN----- 124 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~----------g~---~~V~avD~---s-~~~~~-----------a~~~~~~~~----- 124 (391)
+..+|||+|.|+|+..+.+.+. .. -+++.+|. + +.+.. +++..+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3468999999999877665443 11 26899998 4 33322 123333221
Q ss_pred -----CCC---cEEEEEcccccCC--C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 125 -----LQD---VVEVIEGSVEDIV--L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 125 -----~~~---~v~~~~~d~~~~~--~----~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+ .++++.+|+.+.- + ...+|.++.+.+......+--...++..+.++++|||.+...
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 111 4778889987631 2 267999998775433333322467888889999999987643
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.25 Score=46.11 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCC------C
Q 016320 75 HHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIV------L 141 (391)
Q Consensus 75 ~~~~~~~VLDlGc--G~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~------~ 141 (391)
...++++||.+|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++ |.. ++. .
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHHHh
Confidence 4567899999998 45666666665 477 89999988 65555543 3432 222 222 110 0
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+|+|+... + ....+....+.|+++|.++..
T Consensus 236 ~~~~D~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 236 DGGAHGVINVS-V--------SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp TSCEEEEEECS-S--------CHHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCCEEEECC-C--------cHHHHHHHHHHHhcCCEEEEE
Confidence 12689998632 1 123566777899999998754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.064 Score=50.24 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016320 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------ 139 (391)
+.+.....++++||-.|+ |.|.++..+++. |+ +|++++.+ +-++.+++ .+.. .++..+ .++
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~v~~~~-~~~~~~v~~ 221 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD---IVLPLE-EGWAKAVRE 221 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEESS-TTHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEecCc-hhHHHHHHH
Confidence 334455668899999997 347777777765 78 89999998 66666654 2432 223222 221
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....+|+|+... +. + .+....+.|+++|.++..
T Consensus 222 ~~~~~g~Dvvid~~-g~----~-----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 222 ATGGAGVDMVVDPI-GG----P-----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-ch----h-----HHHHHHHhhcCCCEEEEE
Confidence 1124799998632 21 1 244556789999998854
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=2.2 Score=37.74 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCCEEEEECCc--ccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016320 77 FQGKTVLDVGTG--SGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG--~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
.++++||-.|++ +|+ ++..+++.|+ +|+.++.+ ...+.+.+..+..+- .++.++.+|+.+...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 567899999977 444 5667778888 69999887 555556665555432 248999999987521
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 83 ~~~g~id~li~~A 95 (266)
T 3oig_A 83 EQVGVIHGIAHCI 95 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCeeEEEEcc
Confidence 04789998753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.22 Score=46.38 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~ 144 (391)
...++.+||-+|+|. |.++..+++. |+ +|++++.+ +-++.+++ .|.. .++ |..+..+ ...
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~~~~~ 230 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKEKVGG 230 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHHHHSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHHHhCC
Confidence 456789999999964 7777666665 77 89999988 66665543 4432 222 2211100 046
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|+... +. ...+....++|+++|.++..
T Consensus 231 ~d~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVTA-VS--------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEESS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC-CC--------HHHHHHHHHHhhcCCEEEEe
Confidence 89998522 11 12355566789999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.54 Score=42.04 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
.++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+. ++..+.+|+.+..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4689999999998885 4677888899 79999999 766666666666653 3888899987642
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
.-++.|++|.+.
T Consensus 83 ~~G~iDiLVNNA 94 (255)
T 4g81_D 83 EGIHVDILINNA 94 (255)
T ss_dssp TTCCCCEEEECC
T ss_pred HCCCCcEEEECC
Confidence 126899999854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.63 Score=47.70 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=66.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-----------C--CeEEEEec---h-HHHHHH-----------HHHHHHcCC----
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-----------A--RKVYAVEA---T-KMSDHA-----------RTLVKANNL---- 125 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-----------~--~~V~avD~---s-~~~~~a-----------~~~~~~~~~---- 125 (391)
+.-+|||+|-|+|+..+.+.+.- . -+++++|. + +.+..+ ++..+....
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 33689999999998766554421 1 16899998 6 444322 233322211
Q ss_pred ------C---CcEEEEEcccccCC--C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 126 ------Q---DVVEVIEGSVEDIV--L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 126 ------~---~~v~~~~~d~~~~~--~----~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. -.+++..+|+.+.- + ...+|+++.+.+......+---..++..+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0 12567778876531 1 257999998876544333322467888999999999988743
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.39 Score=45.04 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=54.1
Q ss_pred CEEEEECCcc-cHHH-HHHH-Hc-CCCeEEEEech-H---HHHHHHHHHHHcCCCCcEEEEEc---cc---ccCCCCCcc
Q 016320 80 KTVLDVGTGS-GILA-IWSA-QA-GARKVYAVEAT-K---MSDHARTLVKANNLQDVVEVIEG---SV---EDIVLPEKV 145 (391)
Q Consensus 80 ~~VLDlGcG~-G~ls-~~~a-~~-g~~~V~avD~s-~---~~~~a~~~~~~~~~~~~v~~~~~---d~---~~~~~~~~~ 145 (391)
.+||-+|+|. |.++ ..+| +. |+++|++++.+ + -++.+++ .|. +.+.. |+ .++ .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~~i~~~--~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYVDSRQTPVEDVPDV--YEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEEETTTSCGGGHHHH--SCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----cccCCCccCHHHHHHh--CCCC
Confidence 8999999865 7777 7777 65 88669999998 6 6666653 343 22211 11 111 1368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+-.. + . ...+....++|+++|+++..
T Consensus 244 Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 244 DFIYEAT-G----F----PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 9998421 1 1 12355566789999998754
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.12 Score=48.19 Aligned_cols=97 Identities=23% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcccE
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~D~ 147 (391)
...++.+||-+|+|. |.++..+++ .+..+|+++|.+ +-++.++ ..+....+..-..|..+ +.-...+|.
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~ 235 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGLGVQS 235 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCCCceE
Confidence 356789999999987 445555454 566689999999 6555444 44443222222222211 111245777
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++.... -...+....+.|+++|.++...
T Consensus 236 ~~~~~~---------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 236 AIVCAV---------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEECCS---------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEecc---------CcchhheeheeecCCceEEEEe
Confidence 764321 1234555667899999987543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.93 Score=40.42 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=56.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------C
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------P 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 142 (391)
.++++++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+- ++.++++|+.+..- .
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999886 4667788898 79999999 777776666666653 48899999877520 1
Q ss_pred --CcccEEEEcc
Q 016320 143 --EKVDVIISEW 152 (391)
Q Consensus 143 --~~~D~Ivs~~ 152 (391)
++.|++|.+.
T Consensus 81 ~~G~iDiLVNNA 92 (254)
T 4fn4_A 81 TYSRIDVLCNNA 92 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 6799999854
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.57 Score=43.15 Aligned_cols=94 Identities=27% Similarity=0.284 Sum_probs=57.4
Q ss_pred hcCCCCCCCEEEEEC-Ccc-cHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CCCccc
Q 016320 72 QNKHHFQGKTVLDVG-TGS-GILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED-IV-LPEKVD 146 (391)
Q Consensus 72 ~~~~~~~~~~VLDlG-cG~-G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D 146 (391)
+.....++.+||-+| +|. |.++..+++. |+ +|++++.++-.+.++ +.|.. .++..+-.+ +. .-..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLK----ALGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHH----HHTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHH----HcCCC---EEEeCCCcchhhhhccCCC
Confidence 345567889999997 664 8888888776 77 799988554344444 34543 233222111 11 115799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+-.. + -+. +....++|+++|.++..
T Consensus 218 ~v~d~~-g--------~~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVIDLV-G--------GDV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEESS-C--------HHH-HHHHGGGEEEEEEEEEC
T ss_pred EEEECC-C--------cHH-HHHHHHhccCCCEEEEe
Confidence 998521 1 122 35667899999998743
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=0.086 Score=62.05 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=47.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-C-----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-G-----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g-----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~I 148 (391)
+..+||+||.|+|..+..+.+. + ..+++..|+| ...+.|+++.+... ++.-..|..+. . .+..||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeEE
Confidence 4568999999999765444332 1 2368889999 77777776665421 33322232221 1 23579999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+.. .++....+...+..++++|||||.+++..
T Consensus 1316 ia~~---vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1316 VCNC---ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEC---C--------------------CCEEEEEE
T ss_pred EEcc---cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9732 23333345667888899999999987653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.59 E-value=0.1 Score=49.02 Aligned_cols=93 Identities=27% Similarity=0.245 Sum_probs=56.8
Q ss_pred hcCCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CC
Q 016320 72 QNKHHFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IV 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlG-cG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~ 140 (391)
+.....++++||-.| +| .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.+ ..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK---RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEeCCchHHHHHHHHHh
Confidence 344556789999995 33 47777766665 77 79999998 66666654 3332 222221111 11
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+|+... +. . .+....+.|+++|.++..
T Consensus 233 -~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 233 -GQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp -SSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEEC
T ss_pred -CCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEEE
Confidence 35799998632 21 1 244455789999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.61 Score=43.46 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEECCcc--cHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-c------cccCCC
Q 016320 74 KHHFQGKTVLDVGTGS--GILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-S------VEDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~--G~ls~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d------~~~~~~ 141 (391)
....++++||..|+|+ |..+..+++ . |+ +|+++|.+ +.++.+++ .+.. .++.. + +.++..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCC---EEecCCCccHHHHHHHHhc
Confidence 4456789999999984 555555444 5 77 79999998 66666643 2322 22221 1 111111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.+|+|+... +. ...+....++|+++|.++..
T Consensus 238 ~~~~d~vi~~~-g~--------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 238 SKGVDAVIDLN-NS--------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TSCEEEEEESC-CC--------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCCceEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 04799998632 11 23466677899999998754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1 Score=41.76 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=57.6
Q ss_pred hcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCC------
Q 016320 72 QNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIV------ 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~------ 140 (391)
+.....++++||..|+ |.|..+..+++. |+ +|++++.+ +.++.+++ ..|.. .++.. +..++.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~---~~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD---DAFNYKEESDLTAALKRC 221 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS---EEEETTSCSCSHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc---eEEecCCHHHHHHHHHHH
Confidence 4445567899999997 357776666664 77 79999998 65555542 23432 12211 111110
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+..+|+|+... + . ..+....++|+++|.++..
T Consensus 222 ~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 222 FPNGIDIYFENV-G-------G--KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp CTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCcEEEECC-C-------H--HHHHHHHHHHhcCCEEEEE
Confidence 124699998632 1 1 2456667889999998753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.33 E-value=0.34 Score=45.13 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=55.9
Q ss_pred CCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCC
Q 016320 75 HHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPE 143 (391)
Q Consensus 75 ~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~ 143 (391)
...++++||..|+ |.|.++..+++. |+ +|++++.+ +.++.+++ .+.. .++...-.+ .....
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD---ETVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHhCCC
Confidence 4567899999998 457777776664 77 89999998 66666653 2332 222211111 11124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+|+... + . . .+....+.|+++|.++..
T Consensus 235 ~~d~vi~~~-g----~-~----~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 235 GADKVVDHT-G----A-L----YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp CEEEEEESS-C----S-S----SHHHHHHHEEEEEEEEES
T ss_pred CceEEEECC-C----H-H----HHHHHHHhhccCCEEEEE
Confidence 799998632 2 1 1 234455678999988754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.13 Score=48.23 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=56.3
Q ss_pred hcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016320 72 QNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~ 140 (391)
......++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.++ ..+.. .++..+-.++ .
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~----~~ga~---~~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIKKYV 235 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHH----HcCCC---EEEeCCCchHHHHHHHHc
Confidence 3345567899999997 346666665554 77 79999988 6555443 33432 2222111111 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
....+|+|+... +. ..+....++|+++|.++...
T Consensus 236 ~~~~~D~vi~~~-G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 236 GEKGIDIIIEML-AN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp CTTCEEEEEESC-HH---------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCcEEEEECC-Ch---------HHHHHHHHhccCCCEEEEEe
Confidence 123699998632 21 12445567899999987543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.17 Score=49.72 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------------
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------------- 141 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------------- 141 (391)
-+++|+-||.|.+++-+.++|...|.++|++ ..++..+.+.. ......++.+|+.++..
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 5899999999999999999998789999999 55544443321 11124567789877642
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
...+|+|+.-+
T Consensus 166 ~~~~~Dvl~gGp 177 (482)
T 3me5_A 166 HIPEHDVLLAGF 177 (482)
T ss_dssp HSCCCSEEEEEC
T ss_pred cCCCCCEEEecC
Confidence 14689998743
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.89 E-value=0.26 Score=45.07 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccC--CCCCcccEE
Q 016320 76 HFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDI--VLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~--~~~~~~D~I 148 (391)
..++++||-+|+ |.|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+- .++ .. ..+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~-~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW-GGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT-TSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh-cCceEE
Confidence 567899999998 347777776665 77 89999998 65555543 3432 2222111 111 11 579999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+. . +. + .+....+.|+++|.++..
T Consensus 194 id-~-g~----~-----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE-V-RG----K-----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE-C-SC----T-----THHHHHTTEEEEEEEEEC
T ss_pred EE-C-CH----H-----HHHHHHHhhccCCEEEEE
Confidence 85 3 32 1 245556789999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.12 Score=47.91 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=55.3
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CC
Q 016320 73 NKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--G~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~ 141 (391)
.....++++||-.|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++..+-.++ ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEECCCccHHHHHHHHhC
Confidence 345567899999994 34666555555 488 79999998 66666654 2322 1222111111 11
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+++... + . ..+....++|+++|.++..
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEEEE
Confidence 24699998632 2 1 1245556788999988754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.14 Score=47.95 Aligned_cols=91 Identities=26% Similarity=0.284 Sum_probs=55.9
Q ss_pred hcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016320 72 QNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~ 140 (391)
+.....++++||-+|+ | .|.++..+++. |+ +|+++ .+ +-++.+++ .|.. . +. +-.++ .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~--~--i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT--P--ID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE--E--EE-TTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC--E--ec-cCCCHHHHHHHHh
Confidence 4445667899999994 4 47777777776 77 79999 66 55555543 3432 1 32 21111 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+|+|+-.. + . ..+....+.|+++|.++..
T Consensus 213 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEEE
Confidence 124799988522 2 1 2345556789999998754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.63 Score=43.72 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=57.5
Q ss_pred cCCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCC
Q 016320 73 NKHHFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlG-cG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~ 142 (391)
.....++++||-.| +| .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.++ ...
T Consensus 158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCT
T ss_pred hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcC
Confidence 33456789999999 34 57877777765 77 79999998 66665553 3432 2222211111 012
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+... + . ..+....+.|+++|.++..
T Consensus 230 ~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 230 EGVDVVYESV-G----G-----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp TCEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEEE
Confidence 4699998632 2 1 2355566788999988743
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.20 E-value=0.32 Score=45.13 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred cEEEEEcccccC-C-CC-CcccEEEEccccccccC------------cchHHHHHHHHhccccCCeEEEccccee
Q 016320 128 VVEVIEGSVEDI-V-LP-EKVDVIISEWMGYFLLR------------ESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 128 ~v~~~~~d~~~~-~-~~-~~~D~Ivs~~~~~~l~~------------e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
...++++|..+. . ++ ++||+|++++. |.... ...+..++..+.++|+|||.+++.....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 478999998763 2 33 78999999883 33221 1245677888899999999988765543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=88.72 E-value=1 Score=42.14 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc------ccccCC
Q 016320 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG------SVEDIV 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~ 140 (391)
+.......++.+||-+|+ | .|.+++.+|+. |++.|..++.++-.+..++.++..|.. .++.. ++.++.
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNFF 235 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGTT
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHHH
Confidence 333345668899999997 3 58888888876 885455555542111112334455543 22321 122221
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. ..+|+|+-.. + . ... ....++|+++|.++..
T Consensus 236 ~~~~~~Dvvid~~-g----~----~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 236 KDMPQPRLALNCV-G----G----KSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp SSSCCCSEEEESS-C----H----HHH-HHHHTTSCTTCEEEEC
T ss_pred hCCCCceEEEECC-C----c----HHH-HHHHHhhCCCCEEEEE
Confidence 11 2489988421 1 1 122 2346889999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.39 Score=44.72 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc----c-cccCCCCCc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG----S-VEDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~----d-~~~~~~~~~ 144 (391)
.. ++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-++.+++ .|.. .++.. + +.++.....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTDGLG 238 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHTTCC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhcCCC
Confidence 45 889999999975 7777776664 67 79999998 66666654 3432 22221 1 111111247
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+|+... + . ...+....++|+++|.++..
T Consensus 239 ~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLV-G----T----EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred ccEEEECC-C----C----hHHHHHHHHHhhcCCEEEEe
Confidence 99998522 1 1 22455666789999998754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.50 E-value=0.75 Score=42.52 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=37.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechH----HHHHHHHHHHHc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK----MSDHARTLVKAN 123 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~----~~~~a~~~~~~~ 123 (391)
..++..|||--||+|..+..+.+.|. +.+++|+++ .++.+++++...
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 36789999999999999999999986 799999994 566777766543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.44 E-value=2.2 Score=37.22 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=52.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.++..+. ++.++..|+.+.. .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357889999987764 4566777788 79999998 666666666665543 4899999987742 1
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 80 ~~~id~li~~A 90 (247)
T 3lyl_A 80 NLAIDILVNNA 90 (247)
T ss_dssp TCCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14689999753
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=2.3 Score=39.49 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhcCCCC-CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcC--------------
Q 016320 62 RMDAYFNSIFQNKHHF-QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANN-------------- 124 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~-~~~~VLDlGcG~G~ls~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~-------------- 124 (391)
|...+.+.+.+.+... +...|+.||||.=.....+...+ ..+++=||.-++++.-++.+...+
T Consensus 73 Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~ 152 (334)
T 3iei_A 73 RVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDT 152 (334)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccc
Confidence 4444445554444333 45789999999877777776542 225666666555555444444311
Q ss_pred --------CCCcEEEEEcccccCC----------CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 125 --------LQDVVEVIEGSVEDIV----------LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 --------~~~~v~~~~~d~~~~~----------~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
-..+..++..|+++.. +. ...-++++|.+...+..+ ....+++.+.... |+|.++
T Consensus 153 ~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~-~~~~ll~~ia~~f-~~~~~i 226 (334)
T 3iei_A 153 LQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPE-QSANLLKWAANSF-ERAMFI 226 (334)
T ss_dssp CBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEE
T ss_pred cccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHH-HHHHHHHHHHHhC-CCceEE
Confidence 1345889999987731 22 556788888876666544 4667777776654 555554
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.16 E-value=0.45 Score=46.30 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc------------
Q 016320 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE------------ 137 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~------------ 137 (391)
....++.+||-+|+ | .|.++..+|+. |+ +|++++.+ +-++.+++ .|.. .++...-.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA----MGAE---AIIDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCC---EEEETTTTTCCSEEETTEEC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh----hCCc---EEEecCcCcccccccccccc
Confidence 34567899999997 4 47888877776 77 78888887 66666654 3432 22221111
Q ss_pred ------------cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 138 ------------DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ------------~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.....+|+|+-.. + . ..+....++|+++|.++..
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~-G-------~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHP-G-------R--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECS-C-------H--HHHHHHHHHEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcC-C-------c--hhHHHHHHHhhCCcEEEEE
Confidence 111124799988521 1 1 2355566789999998854
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.01 E-value=1 Score=42.86 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=61.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----C---CCC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----I---VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~---~~~ 142 (391)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .|. +++.-.-.+ + ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 4456789999999976 8888888876 88789999998 66666643 443 223211111 1 112
Q ss_pred CcccEEEEccccccc-------cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFL-------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l-------~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+|+|+-.. +.-. .+.......+....++|+++|.++..
T Consensus 253 ~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 253 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 4699998522 2110 00011223466667889999998754
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.96 Score=42.61 Aligned_cols=92 Identities=22% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcccEE
Q 016320 76 HFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlG-cG-~G~ls~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~D~I 148 (391)
..++++||-.| +| .|.++..+++. |+ +|++++..+-++.+ ++.|.. .++..+-.+ +.....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~~~~~~~~----~~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCSQDASELV----RKLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECGGGHHHH----HHTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeChHHHHHH----HHcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 46789999999 45 47777777765 77 79999833444444 344533 222211111 1111469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+-.. +. ....+....+.|+++|.++..
T Consensus 253 id~~-g~-------~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNV-GG-------STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESS-CT-------THHHHGGGGBCSSSCCEEEES
T ss_pred EECC-CC-------hhhhhHHHHHhhcCCcEEEEe
Confidence 8522 11 112345566889999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=87.82 E-value=0.22 Score=46.29 Aligned_cols=93 Identities=24% Similarity=0.252 Sum_probs=55.9
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CC
Q 016320 73 NKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--G~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~ 141 (391)
.....++++||-.|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++..+-.++ ..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGCH---HTINYSTQDFAEVVREITG 211 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEECCCHHHHHHHHHHhC
Confidence 345567899999995 45766665555 487 89999999 66666654 2322 1222111111 11
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+++... +. ..+....++|+++|.++..
T Consensus 212 ~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 212 GKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEEE
Confidence 24699998632 21 1244556789999988754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=87.73 E-value=2.1 Score=33.94 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=42.2
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEE
Q 016320 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~Ivs 150 (391)
.+|+-+|||. |. ++..+.+.|. .|+++|.+ +.++.+++ .+ +.++.+|..+.. .. ..+|+|++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 4688999985 43 3455555677 69999999 66555442 23 678889876542 12 57898886
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=87.71 E-value=0.94 Score=41.11 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
.....+.+.+.+.....++++||-+|+|- |. ....+++.|+++|+.++.+ +-++...+.+......-.+... +..
T Consensus 109 TD~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~ 186 (283)
T 3jyo_A 109 TDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DAR 186 (283)
T ss_dssp HHHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CST
T ss_pred CCHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHH
Confidence 34556667776655556789999999972 21 3445666788889999988 5444333333322111113332 222
Q ss_pred cCCC-CCcccEEEEc
Q 016320 138 DIVL-PEKVDVIISE 151 (391)
Q Consensus 138 ~~~~-~~~~D~Ivs~ 151 (391)
++.. ...+|+||+-
T Consensus 187 ~l~~~l~~~DiVIna 201 (283)
T 3jyo_A 187 GIEDVIAAADGVVNA 201 (283)
T ss_dssp THHHHHHHSSEEEEC
T ss_pred HHHHHHhcCCEEEEC
Confidence 2211 1468999973
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=86.96 E-value=0.51 Score=44.44 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Ivs~~ 152 (391)
.++++||-+|+|. |.....+++ .|+ +|+++|.+ +-++.+++..... +..+..+..++.. -..+|+||...
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~DvVI~~~ 238 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-----VELLYSNSAEIETAVAEADLLIGAV 238 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCce-----eEeeeCCHHHHHHHHcCCCEEEECC
Confidence 3458999999974 554444443 488 89999999 6666665543221 3333222222110 03689998632
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......... .+.+...+.++++|.++..
T Consensus 239 ~~~~~~~~~---li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 239 LVPGRRAPI---LVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp CCTTSSCCC---CBCHHHHTTSCTTCEEEET
T ss_pred CcCCCCCCe---ecCHHHHhhCCCCCEEEEE
Confidence 111100000 0122234568999987744
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.96 E-value=3.2 Score=36.74 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+..-
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578899999998875 4666777888 69999998 66666665555554 348999999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 85 ~~g~id~lv~nA 96 (264)
T 3ucx_A 85 AYGRVDVVINNA 96 (264)
T ss_dssp HTSCCSEEEECC
T ss_pred HcCCCcEEEECC
Confidence 14789999854
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=0.71 Score=42.44 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC-C-CCCcccEEEEc
Q 016320 79 GKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI-V-LPEKVDVIISE 151 (391)
Q Consensus 79 ~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~-~-~~~~~D~Ivs~ 151 (391)
+. ||-.|+ | .|.++..+|++ |+ +|++++.+ +-++.+++ .|.. .++.. +.... . ..+.+|+|+-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN---RILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS---EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEecCCHHHHHhhcCCCccEEEEC
Confidence 45 999997 4 48888888876 88 79999988 66666654 3432 22221 11111 1 12579988742
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+ ...+....+.|+++|+++..
T Consensus 219 -~g---------~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 -VG---------DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp -SC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred -CC---------cHHHHHHHHHHhcCCEEEEE
Confidence 11 11466667889999998754
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.73 E-value=3.3 Score=36.64 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC------CCcc
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL------PEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~ 145 (391)
.++|+++|-=|.++|+ .+..+++.|+ +|+.+|.+ . +.+.+.++..+- ++..+..|+.+... .+++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCC
Confidence 4689999999999886 5677888899 69999987 4 233444555553 38889999876421 1679
Q ss_pred cEEEEcc
Q 016320 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivs~~ 152 (391)
|++|.+.
T Consensus 81 DiLVNNA 87 (247)
T 4hp8_A 81 DILVNNA 87 (247)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9999853
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=0.3 Score=45.80 Aligned_cols=93 Identities=19% Similarity=0.068 Sum_probs=54.6
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCC
Q 016320 73 NKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~ 141 (391)
.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++ .+.. .++..+-.+ ...
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGAA---AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc---EEEecCChHHHHHHHHHhc
Confidence 344567899999984 346666655554 77 79999988 66666643 2322 122211111 111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|+++... +. . .+....+.|+++|.++..
T Consensus 229 ~~~~d~vi~~~-G~----~-----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 229 GAGVNLILDCI-GG----S-----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TSCEEEEEESS-CG----G-----GHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECC-Cc----h-----HHHHHHHhccCCCEEEEE
Confidence 24699998633 21 1 134445778999998754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=0.83 Score=48.78 Aligned_cols=68 Identities=25% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---------------CC
Q 016320 79 GKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------------VL 141 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------------~~ 141 (391)
..+++||-||.|.+++-+.++|. ..|.|+|++ .+++..+.+ . .+ ..++.+|+.++ .+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N----~-p~-~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN----N-PG-STVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH----C-TT-SEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh----C-CC-CccccccHHHHhhhccchhhhhhhhhhc
Confidence 35899999999999999999997 678899999 554444433 2 12 46676775432 12
Q ss_pred C--CcccEEEEcc
Q 016320 142 P--EKVDVIISEW 152 (391)
Q Consensus 142 ~--~~~D~Ivs~~ 152 (391)
+ +.+|+|+.-+
T Consensus 614 p~~~~vDll~GGp 626 (1002)
T 3swr_A 614 PQKGDVEMLCGGP 626 (1002)
T ss_dssp CCTTTCSEEEECC
T ss_pred ccCCCeeEEEEcC
Confidence 2 5799999744
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=86.52 E-value=1.1 Score=41.89 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHhcCCCCCC-CEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc------cccc
Q 016320 70 IFQNKHHFQG-KTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG------SVED 138 (391)
Q Consensus 70 i~~~~~~~~~-~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~------d~~~ 138 (391)
+.......++ .+||-.|+ | .|.++..+|+. |+ +|+++..+ +.+...++.+++.|.. .++.. ++.+
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHH
Confidence 3333345678 99999997 4 47788887776 88 67777654 3211122233445543 22321 1111
Q ss_pred -C---C--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 139 -I---V--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 -~---~--~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ . -...+|+|+-.. +. .... ...++|+++|.++..
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~-G~--------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV-GG--------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS-CH--------HHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCCceEEEECC-Cc--------hhHH-HHHHHhccCCEEEEe
Confidence 1 0 124699998521 11 1223 345789999998754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.30 E-value=3.3 Score=37.56 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+. ++.++.+|+.+...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999998774 4566777788 79999998 766666665655543 48999999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 105 ~~g~id~lvnnA 116 (301)
T 3tjr_A 105 LLGGVDVVFSNA 116 (301)
T ss_dssp HHSSCSEEEECC
T ss_pred hCCCCCEEEECC
Confidence 04789999853
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.88 E-value=2.1 Score=37.68 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----C-----
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----P----- 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 142 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 467899999998875 4566777788 79999998 66666555555544 358999999877521 0
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 4789999753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=85.74 E-value=2.9 Score=38.29 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
...+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+...++.++..|+.+..-
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999998775 4566677788 69999998 6666666555554443358999999877420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+.+|++|.+.
T Consensus 84 ~~g~id~lv~nA 95 (319)
T 3ioy_A 84 RFGPVSILCNNA 95 (319)
T ss_dssp HTCCEEEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14789999854
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.60 E-value=0.53 Score=43.59 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=39.9
Q ss_pred cEEEE-EcccccC--CCC-CcccEEEEcccccccc------Cc---chHHHHHHHHhccccCCeEEEcccc
Q 016320 128 VVEVI-EGSVEDI--VLP-EKVDVIISEWMGYFLL------RE---SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 128 ~v~~~-~~d~~~~--~~~-~~~D~Ivs~~~~~~l~------~e---~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
..+++ ++|..+. .++ +++|+|++++. |... .+ ..+...+..+.++|+|+|.+++...
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 36788 9998763 233 68999999884 4332 11 1345667778899999999887644
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=85.51 E-value=2.5 Score=37.40 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=53.0
Q ss_pred CCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016320 75 HHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
...++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.+...+ .++.++.+|+.+..-
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH
Confidence 34678899999987764 4555667788 69999998 66666655555544 348999999876521
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 102 ~~~g~id~lv~~A 114 (262)
T 3rkr_A 102 AAHGRCDVLVNNA 114 (262)
T ss_dssp HHHSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14689999753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.37 E-value=3.1 Score=36.64 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578899999988875 4566777798 69999998 66666665555544 348999999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 86 ~~g~id~lv~nA 97 (256)
T 3gaf_A 86 QFGKITVLVNNA 97 (256)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 04789999853
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.35 E-value=3.2 Score=36.26 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988764 4666777788 69999998 66666555555543 348899999877521
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 03789999854
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.90 E-value=3 Score=37.49 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+..-
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999988875 4566777788 79999998 66555555444333 348999999877420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999753
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.88 E-value=8 Score=34.19 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=50.6
Q ss_pred CEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 80 KTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
++||-.|+ |.++..+++. |. +|++++.+ ....... . ..++++.+|+.++. -..+|+||... +
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~-~~~~d~vi~~a-~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS-LDGVTHLLIST-A 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC-CTTCCEEEECC-C
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHh----h----CCCeEEEecccccc-cCCCCEEEECC-C
Confidence 57999995 7777666553 66 79999988 4332222 1 23899999999877 57899998732 1
Q ss_pred ccccCcchHHHHHHHHhc
Q 016320 155 YFLLRESMFDSVICARDR 172 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~ 172 (391)
...........+++.+.+
T Consensus 73 ~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 73 PDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp CBTTBCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHh
Confidence 111122234455565544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.86 E-value=3.5 Score=36.41 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=52.5
Q ss_pred CCCCEEEEECC-cccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGT-GSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGc-G~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++++||-.|+ |+|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ ..++.++.+|+.+...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 56789999998 6664 5667778888 69999998 66665555554433 2359999999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 04789999853
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.62 E-value=3.7 Score=36.98 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=51.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ .+|+.++.+ +.++.+.+.+.......++.++.+|+.+.. ..
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999988775 3455566665 379999988 666655555544322345889999987752 11
Q ss_pred ---CcccEEEEcc
Q 016320 143 ---EKVDVIISEW 152 (391)
Q Consensus 143 ---~~~D~Ivs~~ 152 (391)
+++|++|.+.
T Consensus 111 ~~~g~iD~lVnnA 123 (287)
T 3rku_A 111 QEFKDIDILVNNA 123 (287)
T ss_dssp GGGCSCCEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 4799999854
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.61 E-value=6.2 Score=36.31 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=64.2
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CCC---------cEEEEEcccccC
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQD---------VVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~~---------~v~~~~~d~~~~ 139 (391)
.+|.-||+|+ | .++..+|.+|. .|+..|++ +.++.+.++++++ + +.. ++++. .|+.+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~a 84 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAEA 84 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHhH
Confidence 5799999997 4 36778888898 69999999 7777766655431 1 111 12222 222221
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
-...|+|+=. ..........++..+.++++|+.++--+..++-
T Consensus 85 --~~~ad~ViEa----v~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~ 127 (319)
T 3ado_A 85 --VEGVVHIQEC----VPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLL 127 (319)
T ss_dssp --TTTEEEEEEC----CCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCC
T ss_pred --hccCcEEeec----cccHHHHHHHHHHHHHHHhhhcceeehhhhhcc
Confidence 1467888732 222234567889999999999987665544443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.48 E-value=3.9 Score=36.37 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=52.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.+...+...++.++.+|+.+...
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999987654 4455666787 79999988 6555555555555554568889999876421
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+||...
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 03689998743
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=2.4 Score=39.66 Aligned_cols=83 Identities=24% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCEEEEECCcc-cHHHHHHHHc-CCCeEEEEechH----HHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCcc
Q 016320 79 GKTVLDVGTGS-GILAIWSAQA-GARKVYAVEATK----MSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEKV 145 (391)
Q Consensus 79 ~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s~----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~ 145 (391)
+++||-+|+|. |.++..+++. |+ +|++++.++ -++.++ ..|. ..+ | .+ .+ ...+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~----~~ga----~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIE----ETKT----NYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHH----HHTC----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHH----HhCC----cee--c-hH-HHHHHHHHhCCCC
Confidence 89999999853 5555555554 88 899999863 333333 3342 222 2 22 11 1469
Q ss_pred cEEEEccccccccCcchHHHHH-HHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVI-CARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l-~~~~~~LkpgG~~i~~ 183 (391)
|+|+... + .. ..+ +...+.|+++|.++..
T Consensus 248 d~vid~~-g----~~----~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 248 DVIIDAT-G----AD----VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEECC-C----CC----THHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECC-C----Ch----HHHHHHHHHHHhcCCEEEEE
Confidence 9998632 1 11 124 6667889999988754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=84.25 E-value=4.3 Score=35.87 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCC---------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~--------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.. .+ ..++.++.+|+.+..-
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999998874 4566777788 69999998 665555554444 32 2238899999877421
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 83 ~~~g~id~lvnnA 95 (265)
T 3lf2_A 83 RTLGCASILVNNA 95 (265)
T ss_dssp HHHCSCSEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 14789999853
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=83.85 E-value=6.3 Score=35.62 Aligned_cols=94 Identities=14% Similarity=0.251 Sum_probs=57.4
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCC-C-------------CcEEEEEcc
Q 016320 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNL-Q-------------DVVEVIEGS 135 (391)
Q Consensus 80 ~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~-~-------------~~v~~~~~d 135 (391)
++|.-||+|. |. ++..++++|. +|+.+|.+ +.++.+++.+.. .+. . .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999996 43 6777788887 79999999 777665443321 221 1 023332 23
Q ss_pred cccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 136 ~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
..+. -...|+||.-.. ........++..+...++++.+++
T Consensus 94 ~~~~--~~~aD~Vi~avp----~~~~~~~~v~~~l~~~~~~~~iv~ 133 (302)
T 1f0y_A 94 AASV--VHSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFA 133 (302)
T ss_dssp HHHH--TTSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred HHHh--hcCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 3311 156899986321 111124567778888888887665
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.75 E-value=3.8 Score=35.92 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-CCCcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-LQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.... -..++.++.+|+.+..-
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999998875 4566777798 79999998 66655555444432 11348899999877421
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14799999853
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=83.59 E-value=9.9 Score=34.20 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
....+.+.+.......++++||-+|+|- |. ....+++.|+++|+.++.+ +-.+...+.....+ .+... +..+
T Consensus 109 D~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~ 183 (281)
T 3o8q_A 109 DGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQ 183 (281)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGG
T ss_pred HHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHH
Confidence 3455666665543346789999999972 22 2344555687789999988 54433333332221 24444 3344
Q ss_pred CCCCCcccEEEEc
Q 016320 139 IVLPEKVDVIISE 151 (391)
Q Consensus 139 ~~~~~~~D~Ivs~ 151 (391)
+. ..+|+||+-
T Consensus 184 l~--~~aDiIIna 194 (281)
T 3o8q_A 184 LK--QSYDVIINS 194 (281)
T ss_dssp CC--SCEEEEEEC
T ss_pred hc--CCCCEEEEc
Confidence 43 679999973
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.57 E-value=3.9 Score=36.57 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+..-
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999988774 4566777788 69999998 66665555555544 348999999877420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 99 ~g~id~lv~nA 109 (279)
T 3sju_A 99 FGPIGILVNSA 109 (279)
T ss_dssp HCSCCEEEECC
T ss_pred cCCCcEEEECC
Confidence 14789999853
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=83.51 E-value=1.7 Score=41.99 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-------------
Q 016320 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV------------- 136 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~------------- 136 (391)
....++++||-.|+ | .|.++..++++ |+ +|++++.+ +-++.++ +.|....+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccch
Confidence 44567899999997 4 47777777776 77 78899887 6555554 345432121111111
Q ss_pred ---------ccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 ---------EDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ---------~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+.. ...+|+|+... +. ..+....++|+++|.++..
T Consensus 291 ~~~~~~~~v~~~~-g~g~Dvvid~~-G~---------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKA-GREPDIVFEHT-GR---------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHH-SSCCSEEEECS-CH---------HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHh-CCCceEEEECC-Cc---------hHHHHHHHHHhcCCEEEEE
Confidence 0111 34699998522 11 1345556788999998754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=82.97 E-value=2.8 Score=36.96 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+..-
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999987764 4566777788 69999998 66665555554333 458999999877421
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 81 ~g~id~lv~nA 91 (257)
T 3imf_A 81 FGRIDILINNA 91 (257)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999753
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=82.94 E-value=3.9 Score=36.69 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=49.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCc
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~ 144 (391)
..++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+ . +..++.++..|+.+..- -++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAAR---T--MAGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT---T--SSSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---H--hcCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 4678999999988764 4566677788 79999988 54433322 1 23458999999877520 147
Q ss_pred ccEEEEcc
Q 016320 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivs~~ 152 (391)
+|++|.+.
T Consensus 87 iD~lv~nA 94 (291)
T 3rd5_A 87 ADVLINNA 94 (291)
T ss_dssp EEEEEECC
T ss_pred CCEEEECC
Confidence 89999853
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=0.72 Score=43.73 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=51.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHH-HcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGS-GILAIWSA-QAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~-G~ls~~~a-~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Ivs~~ 152 (391)
.++++|+-+|+|. |......+ ..|+ +|+++|.+ +-++.+++. .+.. +.....+..++. .-..+|+|+...
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~---~g~~--~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAE---FCGR--IHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTTS--SEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHh---cCCe--eEeccCCHHHHHHHHcCCCEEEECC
Confidence 5678999999975 44443333 3488 79999999 655554432 2221 222211111111 014689998632
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......... .+.....+.++|||+++-.
T Consensus 240 ~~p~~~t~~---li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 240 LVPGAKAPK---LVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp CCTTSCCCC---CBCHHHHTTSCTTCEEEEG
T ss_pred CcCCCCCcc---eecHHHHhcCCCCcEEEEE
Confidence 101000111 1123344668999988744
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.90 E-value=6.2 Score=34.94 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016320 75 HHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
....+++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+ .++.++.+|+.+...
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHH
Confidence 34677899999987653 3455666787 79999988 65555544454443 348999999876420
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-+++|+||...
T Consensus 104 ~~~g~iD~li~~A 116 (272)
T 1yb1_A 104 AEIGDVSILVNNA 116 (272)
T ss_dssp HHTCCCSEEEECC
T ss_pred HHCCCCcEEEECC
Confidence 14789999853
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=82.87 E-value=5.1 Score=35.68 Aligned_cols=75 Identities=23% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~---------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ..++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999988764 4566777788 79999998 666655555554432 1258999999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 88 ~~g~id~lv~nA 99 (281)
T 3svt_A 88 WHGRLHGVVHCA 99 (281)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.68 E-value=0.57 Score=41.84 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=37.3
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc-C--c---------chHHHHHHHHhccccCCeEEEcc
Q 016320 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL-R--E---------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~-~--e---------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+++++|..+. .++ +++|+|++++. |... . . ..+...+..+.++|+|+|.+++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPP-Y~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCC-CCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 46788887653 223 78999999984 3322 1 0 13456777888999999998765
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=1.6 Score=45.65 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=31.7
Q ss_pred CEEEEECCcccHHHHHHHHcC------CCeEEEEech-HHHHHHHHH
Q 016320 80 KTVLDVGTGSGILAIWSAQAG------ARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g------~~~V~avD~s-~~~~~a~~~ 119 (391)
.+||||-||.|.++.-+.++| ...+.|+|++ .+++.-+.+
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence 589999999999998888876 4568999999 555554444
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.52 E-value=3.7 Score=36.52 Aligned_cols=72 Identities=21% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016320 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 142 (391)
.++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+..- -
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999988775 4566777788 69999998 66666665555544 348888999876420 1
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999853
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=82.52 E-value=3.8 Score=36.63 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+...+ .++.++.+|+.+..-
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578899999998774 4566777788 79999988 66665555555544 348889999877521
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 106 ~~g~iD~lvnnA 117 (276)
T 3r1i_A 106 ELGGIDIAVCNA 117 (276)
T ss_dssp HHSCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 04799999853
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.51 E-value=7.1 Score=37.89 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=57.8
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C------C-CCcEEEEEcccccCCCC
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N------L-QDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~------~-~~~v~~~~~d~~~~~~~ 142 (391)
.+|.-||+|. | .++..++++|. .|+.+|.+ +.++.+++.+..+ + . .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 5799999997 4 46667777787 79999999 7777665533210 1 0 011222 4444322
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
...|+||.-.. ........++..+...++|+.+++-
T Consensus 113 ~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 57899986331 1111245677777788888887664
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.40 E-value=4 Score=36.13 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 145 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+....+.++..|+.+.. .-+++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 567899999987764 4566777788 79999998 655555554544433345788888887642 01478
Q ss_pred cEEEEcc
Q 016320 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivs~~ 152 (391)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999853
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.38 E-value=5.7 Score=35.36 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=52.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-------------h-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-------------T-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~-------------s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..++++||-.|++.|+ ++..+++.|+ +|+++|. + +.++.+.+.+...+ .++.++..|+.+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD 88 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 4678999999998875 4666777888 7999986 5 45555555555444 348899999876
Q ss_pred CCC-----------CCcccEEEEcc
Q 016320 139 IVL-----------PEKVDVIISEW 152 (391)
Q Consensus 139 ~~~-----------~~~~D~Ivs~~ 152 (391)
..- -+++|++|.+.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 420 14789999853
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.34 E-value=6.6 Score=35.03 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------
Q 016320 75 HHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~-s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 141 (391)
....++++|-.|++.|+ ++..+++.|+ +|+.++. + +.++...+.+...+ .++.++.+|+.+...
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 101 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAV 101 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence 34678899999988875 4666777788 7999985 4 54554444455444 348999999987531
Q ss_pred ---CCcccEEEEcc
Q 016320 142 ---PEKVDVIISEW 152 (391)
Q Consensus 142 ---~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 102 ~~~~g~iD~lvnnA 115 (280)
T 4da9_A 102 VAEFGRIDCLVNNA 115 (280)
T ss_dssp HHHHSCCCEEEEEC
T ss_pred HHHcCCCCEEEECC
Confidence 03789999854
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.24 E-value=4.9 Score=36.10 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=51.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++|+++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ + .++..+.+|+.+..-
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999885 5677788899 79999999 6555443322 2 337788899876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 100 ~~G~iDiLVNNA 111 (273)
T 4fgs_A 100 EAGRIDVLFVNA 111 (273)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799998754
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=2.3 Score=40.88 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=44.2
Q ss_pred CCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccCCCCCccc-EE
Q 016320 79 GKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDIVLPEKVD-VI 148 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~----g--~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~D-~I 148 (391)
...|+|+|+|+|.|+.-+.+. + ..+++.||+| .+.+.-++.+... .+..+|.+.. + +|+.+. +|
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP~~~~g~i 211 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LPERFEGVV 211 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CCSCEEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CCccCceEE
Confidence 468999999999987665442 2 2379999999 6666555555432 1233477653 1 344555 56
Q ss_pred EE-ccccc
Q 016320 149 IS-EWMGY 155 (391)
Q Consensus 149 vs-~~~~~ 155 (391)
++ |++..
T Consensus 212 iANE~fDA 219 (432)
T 4f3n_A 212 VGNEVLDA 219 (432)
T ss_dssp EEESCGGG
T ss_pred Eeehhhcc
Confidence 66 44433
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=82.09 E-value=4.9 Score=38.66 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCcccH--HHHHHHHcCCCeEEEEechHHHH--HHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016320 75 HHFQGKTVLDVGTGSGI--LAIWSAQAGARKVYAVEATKMSD--HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~--ls~~~a~~g~~~V~avD~s~~~~--~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs 150 (391)
..+++++|.-||+|+=. .++-+...|..-++|+-.....+ ...+++...|+. + .++.+.. ...|+|+.
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~----v--~~~~eA~--~~ADvV~~ 104 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK----V--GTYEELI--PQADLVIN 104 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE----E--EEHHHHG--GGCSEEEE
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE----e--cCHHHHH--HhCCEEEE
Confidence 34678999999999844 35556667886677775432111 234456666753 2 2333322 57899875
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|..+.....+.+.+...|+||..+.+.+.-
T Consensus 105 ------L~PD~~q~~vy~~I~p~lk~G~~L~faHGF 134 (491)
T 3ulk_A 105 ------LTPDKQHSDVVRTVQPLMKDGAALGYSHGF 134 (491)
T ss_dssp ------CSCGGGHHHHHHHHGGGSCTTCEEEESSCH
T ss_pred ------eCChhhHHHHHHHHHhhCCCCCEEEecCcc
Confidence 223334566778899999999999887653
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.79 E-value=6.2 Score=34.80 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=50.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+.......++.++.+|+.+...
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999987764 4556677788 79999988 6555444444332112348899999877421
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 90 ~g~id~lv~nA 100 (267)
T 1iy8_A 90 FGRIDGFFNNA 100 (267)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 03689999853
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=81.47 E-value=7.1 Score=34.01 Aligned_cols=73 Identities=27% Similarity=0.238 Sum_probs=50.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
..++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999988764 4556677788 79999988 65555554444433 348899999876421
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (247)
T 2jah_A 82 LGGLDILVNNA 92 (247)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999853
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=81.45 E-value=5.2 Score=35.28 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCcc--cH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------
Q 016320 76 HFQGKTVLDVGTGS--GI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~--G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 141 (391)
.++++++|--|+++ |+ ++..+++.|+ +|+.++.+ +.++.+.+.+++.+- .++.+++.|+.+..-
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHH
Confidence 46789999999643 43 5677888899 79999998 666666666655432 237888999876420
Q ss_pred ---CCcccEEEEcc
Q 016320 142 ---PEKVDVIISEW 152 (391)
Q Consensus 142 ---~~~~D~Ivs~~ 152 (391)
-++.|+++.+.
T Consensus 81 ~~~~G~iD~lvnnA 94 (256)
T 4fs3_A 81 GKDVGNIDGVYHSI 94 (256)
T ss_dssp HHHHCCCSEEEECC
T ss_pred HHHhCCCCEEEecc
Confidence 16799998753
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=81.44 E-value=7.2 Score=34.97 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=42.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEe-ch-HHHHHHHHHHH-HcCCCCcEEEEEcccccCC
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVE-AT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD-~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~ 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++ .+ +.++.+.+.+. ..+ .++.++..|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 73 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence 467889998888764 4556667788 799999 87 55555444443 333 34899999988754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.35 E-value=2.8 Score=37.57 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+- ..+.++.+|+.+..-
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999988764 4566677788 79999998 655554444433321 236889999877521
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 109 ~g~iD~lvnnA 119 (281)
T 4dry_A 109 FARLDLLVNNA 119 (281)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999854
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.17 E-value=3.6 Score=36.74 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=52.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 142 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+... .
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 568899999988774 4566777788 79999988 65555555555544 348999999877521 0
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|++|.+.
T Consensus 108 g~iD~lvnnA 117 (275)
T 4imr_A 108 APVDILVINA 117 (275)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999854
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.13 E-value=4.9 Score=35.47 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+- .++.++.+|+.+...
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVE 84 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567899999988764 4566777788 79999998 666655555554432 348999999877421
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 85 ~~g~id~lvnnA 96 (262)
T 3pk0_A 85 EFGGIDVVCANA 96 (262)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 04789999853
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.91 E-value=7.1 Score=34.64 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-------------h-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-------------T-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~-------------s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+++|. + +.++.+.+.+...+ .++.++..|+.+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~ 84 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRD 84 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 3578899999998875 4666777898 7999987 4 44444444444443 348999999877
Q ss_pred CCC-----------CCcccEEEEcc
Q 016320 139 IVL-----------PEKVDVIISEW 152 (391)
Q Consensus 139 ~~~-----------~~~~D~Ivs~~ 152 (391)
..- -+++|++|.+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lvnnA 109 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIVANA 109 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 521 04789999853
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=80.81 E-value=7.5 Score=33.85 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+ .++.++.+|+.+...
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999987653 4455666787 79999988 55554444444433 348999999876421
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|+||...
T Consensus 88 ~~~id~vi~~A 98 (260)
T 3awd_A 88 EGRVDILVACA 98 (260)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 03689999743
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=80.67 E-value=4.1 Score=36.22 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.+...+. ++.++..|+.+...
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3567899999987764 4566777788 79999998 666655555555443 37888899876421
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 102 ~~g~iD~lvnnA 113 (270)
T 3ftp_A 102 EFGALNVLVNNA 113 (270)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 04789999853
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=80.58 E-value=6.8 Score=35.18 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=51.3
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ . ..+.+.+..+..+ .++.++.+|+.+...
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 3578899999988774 4566777788 69999887 4 4444555555444 348999999877421
Q ss_pred --CCcccEEEEc
Q 016320 142 --PEKVDVIISE 151 (391)
Q Consensus 142 --~~~~D~Ivs~ 151 (391)
-+++|++|.+
T Consensus 121 ~~~g~iD~lvnn 132 (291)
T 3ijr_A 121 RQLGSLNILVNN 132 (291)
T ss_dssp HHHSSCCEEEEC
T ss_pred HHcCCCCEEEEC
Confidence 1478999975
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.54 E-value=4.7 Score=36.16 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=51.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~---------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+.+...+- .++.++.+|+.+. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence 457889999988764 4566677788 79999998 655555555544432 3589999999875 20
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 88 ~~g~iD~lv~nA 99 (311)
T 3o26_A 88 HFGKLDILVNNA 99 (311)
T ss_dssp HHSSCCEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14799999854
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.51 E-value=7.4 Score=34.47 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=50.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999987764 4556677788 79999998 65555444444433 24889999987642
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
+.+++|++|.+.
T Consensus 96 ~~g~id~lv~nA 107 (273)
T 1ae1_A 96 FDGKLNILVNNA 107 (273)
T ss_dssp TTSCCCEEEECC
T ss_pred cCCCCcEEEECC
Confidence 115789999854
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=80.43 E-value=8.1 Score=36.54 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=40.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I 148 (391)
....|+|+|+|+|.|+.-+.+. ...+++.||+| ...+.-++.++.. ++|.+. .++.+++ ...-+|
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp--~~~~~v 153 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVP--EGPAVI 153 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSC--CSSEEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcC--CCCeEE
Confidence 3457999999999997766543 12279999999 5544333333222 246665 3444543 234566
Q ss_pred EE
Q 016320 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
++
T Consensus 154 iA 155 (387)
T 1zkd_A 154 LA 155 (387)
T ss_dssp EE
T ss_pred Ee
Confidence 66
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=80.21 E-value=7.4 Score=34.57 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=50.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999988764 4555667788 79999988 65555444444433 348889999876420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 97 ~g~iD~lv~~A 107 (277)
T 2rhc_B 97 YGPVDVLVNNA 107 (277)
T ss_dssp TCSCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 14789999753
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=80.03 E-value=5.6 Score=35.17 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.. .+ .++.++.+|+.+...
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999988774 4566777788 69999988 655555444433 33 348999999987631
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 95 ~~g~id~lv~nA 106 (266)
T 4egf_A 95 AFGGLDVLVNNA 106 (266)
T ss_dssp HHTSCSEEEEEC
T ss_pred HcCCCCEEEECC
Confidence 04789999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 391 | ||||
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-76 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-76 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-73 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-07 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 7e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-06 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 3e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-05 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 6e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-04 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.003 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 0.004 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.004 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 237 bits (605), Expect = 3e-76
Identities = 102/332 (30%), Positives = 165/332 (49%), Gaps = 28/332 (8%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y +EML D VR +Y N+I QNK F+ K VLDVG G+GIL++++A+ GA+
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KVDVIISEWMGYFLLRES 161
V V+ + + + A+ LV+ N D + ++ G +ED+ LP KVD+IISEWMGYFLL ES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M D+V+ ARD +L G+++P + +A + Q + L+ W
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED------SQYKDEKLNYWQDV------- 169
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG D S L + + + V T+ + D +T + D+ +S
Sbjct: 170 YGFDYSPF--------VPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSN 220
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
F + + + + G WFD+ F + +E +T P THW Q +F F +
Sbjct: 221 FKLTAKRQDM-INGIVTWFDIVFPAPKGK---RPVEFSTGPHAPY-THWKQTIFYFPDDL 275
Query: 342 RVSEGDDLNVSFSMTRSKENHRLLEVEFSCEI 373
GD + + +++N+R L ++ S +
Sbjct: 276 DAETGDTIEGELVCSPNEKNNRDLNIKISYKF 307
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 236 bits (603), Expect = 4e-76
Identities = 110/330 (33%), Positives = 176/330 (53%), Gaps = 30/330 (9%)
Query: 46 TYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVY 105
+YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGARKV
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 106 AVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGYFLLRESMFD 164
+E + +SD+A +VKAN L VV +I+G VE++ + EKVD+IISEWMGY L ESM +
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 165 SVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGV 224
+V+ ARD+WL P G+++P A ++V I +Q + + W + YG
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIED------RQYKDYKIHWW-------ENVYGF 167
Query: 225 DMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLS 284
DMS + K ++ L + P Q++ A ++K +D T V+D S F
Sbjct: 168 DMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVED-LTFTSPFCL 218
Query: 285 SIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVS 344
++ + +F++ F + +T+P + THW Q VF + V
Sbjct: 219 QVKRNDY-VHALVAYFNIEFTRCHKR-----TGFSTSPESPY-THWKQTVFYMEDYLTVK 271
Query: 345 EGDDLNVSFSMTRSKENHRLLEVEFSCEIR 374
G+++ + M + +N+R L+ + +
Sbjct: 272 TGEEIFGTIGMRPNAKNNRDLDFTIDLDFK 301
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 229 bits (584), Expect = 2e-73
Identities = 101/330 (30%), Positives = 171/330 (51%), Gaps = 29/330 (8%)
Query: 44 FCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARK 103
F +Y +EML D++R ++Y + I+QN H F+ K VLDVG G+GIL++++A+AGA+K
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 104 VYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESM 162
V V+ +++ A +++ N L+D + +I+G +E++ LP + VDVIISEWMGYFLL ESM
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
DSV+ A++++L G +YP + + + ++ + Y
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSD-------------VNKHADRIAFWDDVY 167
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G MS + K E ++ L P +I +K+IDC T ++ D+
Sbjct: 168 GFKMSCMKKAVIPE--------AVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFT 219
Query: 283 LSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVR 342
L R + +G+FD++F + + + +T P + THW Q VFL
Sbjct: 220 LKITR--TSMCTAIAGYFDIYFEKNCHNR----VVFSTGPQSTK-THWKQTVFLLEKPFS 272
Query: 343 VSEGDDLNVSFSMTRSKENHRLLEVEFSCE 372
V G+ L ++ ++K++ R L V +
Sbjct: 273 VKAGEALKGKVTVHKNKKDPRSLTVTLTLN 302
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 55.3 bits (132), Expect = 2e-09
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 4/122 (3%)
Query: 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVE-ATKMSDHARTLVKANN 124
+ + + +G +VLD+G G G + +AG + Y V+ A + AR +
Sbjct: 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71
Query: 125 LQDVVEVIEGSVEDIVLPEK---VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ V + + Y D R L+P G
Sbjct: 72 RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131
Query: 182 PS 183
+
Sbjct: 132 MT 133
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.4 bits (130), Expect = 5e-09
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 62 RMDAYFNSIFQNKHH------FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-D 114
F+ + + V+D+ G G L++ A G KV A+E +
Sbjct: 85 VAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK 144
Query: 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWL 174
+ N ++D + D D I+ MGY + +
Sbjct: 145 FLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL---MGYVVRTHEFIPKAL----SIA 197
Query: 175 KPTGVMY 181
K +++
Sbjct: 198 KDGAIIH 204
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.3 bits (119), Expect = 1e-07
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 12/154 (7%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
Y A Q + R R Y + VLDV G+G+ +I + G
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVDVIISEWMGY 155
+ KM +A + + + + + D +I +
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 156 FLLRESMFDSVICAR-----DRWLKPTGVMYPSH 184
L +S D ++P G++ H
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 17/216 (7%)
Query: 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ--NKHHFQGKTVLDVGTGSGILAIWSAQA 99
N + +A +Y +++ V + + I + +++ LD+ G+G L
Sbjct: 1 NCYNKFAHIYD--KLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58
Query: 100 GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+ +M A ++ + + + + +++
Sbjct: 59 FKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 160 ESMFDSVICARDRWLKPTGV----------MYPSHARMWVAPIRSGLGDQKQQDYEGALD 209
A LK GV + + + +E L
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLV 177
Query: 210 --DWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQ 243
F+++ + Y D + + EE + YL+
Sbjct: 178 SMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLK 213
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 48.3 bits (114), Expect = 2e-07
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
+DVG G+G + + A R + ++ + L D V ++EG +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93
Query: 139 IVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185
+ +D+ + G L ++ LKP G + +
Sbjct: 94 ALCKIPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAI 135
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV 120
VR A FN I +F G VLD+ GSG LAI + G VE + +
Sbjct: 1 VR-GAIFNMI---GPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDN 56
Query: 121 KANNLQDVVEV---IEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT 177
+ +E L + D++ + + + A L
Sbjct: 57 IIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIE--ALAAKNLLSEQ 114
Query: 178 GVMYPSHARMWVAPIR-SGLGDQKQQDY 204
++ + + P + LG K++ Y
Sbjct: 115 VMVVCETDKTVLLPKEIATLGIWKEKIY 142
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 7/204 (3%)
Query: 42 NYFCTYAFLYHQ--KEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA 99
+ A Y + + + IF+ + + VLD+ G+GI + A+
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE- 61
Query: 100 GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+V ++ + KA +E ++G V +I + D + +
Sbjct: 62 RGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 160 ESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGAL--DDWYSFLKE 217
E + LKP GV W R G +Q E L DW
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFP-CWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPA 179
Query: 218 TKTYYGVDMSVLTKPFSEEQKKYY 241
+ + + +P E +
Sbjct: 180 VQKLRFKRLVQILRPNGEVKAFLV 203
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANN 124
AYF N + G++V+D GTG+GILA S GA V A + + A K N
Sbjct: 35 AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD---IDPDAIETAKRNC 91
Query: 125 LQDVVEVIEGSVEDIVLPEKVDVIIS 150
V + V +I K D I
Sbjct: 92 --GGVNFMVADVSEI--SGKYDTWIM 113
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 2/124 (1%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+++ + + + LD+G G+G +++ A G + +
Sbjct: 10 TEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLE 69
Query: 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT 177
+ A L ++ + + + + D I+S + FL +++ + + R KP
Sbjct: 70 RIKAAEGLDNLQTDLV-DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQ-RCTKPG 127
Query: 178 GVMY 181
G
Sbjct: 128 GYNL 131
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 42.4 bits (99), Expect = 5e-05
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGS 135
G +L+VG GSG ++ + A G + VE + A + V
Sbjct: 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD 145
Query: 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
+ D + + D +I++ + + + +KP V
Sbjct: 146 IADFISDQMYDAVIADIPDPWNHVQKIA--------SMMKPGSVA 182
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%)
Query: 49 FLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR--KVYA 106
+L + +++ + + N++++ + ++D G G G L + K
Sbjct: 1 YLKNTRDLYYNDDYVSFLVNTVWKIT---KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTG 57
Query: 107 VEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSV 166
+++ + + D + + E + + I ++ + E+M +
Sbjct: 58 IDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKM 117
Query: 167 ICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDM 226
I +K G + W++ + S L D ++Q L + G D
Sbjct: 118 I----HSVKKGGKIICFEPH-WISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 172
Query: 227 SV 228
++
Sbjct: 173 NI 174
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.3 bits (99), Expect = 6e-05
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 77 FQGKTVLDVGTGSGILAI-WSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGS 135
K VLD + +GI I ++ + A +V+ + +S+ A L+K N + + + S
Sbjct: 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLND---ISEDAYELMKRNVMLNFDGELRES 100
Query: 136 VEDIVL--PEKVDVIISEWMGYFLLRESMFDSVIC 168
+L + + + + R F +
Sbjct: 101 KGRAILKGEKTIVINHDDANRLMAERHRYFHFIDL 135
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVE-ATKMSDHARTLVKANNLQD--------- 127
G T +D+G+G G + +A G + E SD + +
Sbjct: 217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276
Query: 128 -VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG------VM 180
+ + V++ + E + + FL E + + + + K +
Sbjct: 277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDL-NKKVEKILQTAKVGCKIISLKSL 335
Query: 181 YPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
++ + + K Q Y+ +D S+ YY
Sbjct: 336 RSLTYQINFYNVENIFNRLKVQRYD-LKEDSVSWTHSGGEYY 376
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
VLD+G G+G A+ + + V+ATK + + V +G+ E
Sbjct: 17 EHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75
Query: 139 IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ P+ II Y S + R LK G
Sbjct: 76 LPFPDDSFDII--TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHART-LVKANNLQDVVEVIEGSVE 137
G +LD+G+GSG + A+ ++ + + + + + V I
Sbjct: 34 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93
Query: 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183
V EK DV + F + LKP G+M
Sbjct: 94 GYVANEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIG 136
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 19/142 (13%)
Query: 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK 111
HQ E+ + + + + G VL G W + G V A +
Sbjct: 1 HQSEV-------NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA 53
Query: 112 MSDHARTLVKANNLQDVVE------------VIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+ T + L
Sbjct: 54 AVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP 113
Query: 160 ESMFDSVICARDRWLKPTGVMY 181
M + + + +
Sbjct: 114 ADMRERYVQHLEALMPQACSGL 135
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 21/190 (11%)
Query: 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIE 133
F+ +L++G+ G + + VE S+ A + + + +
Sbjct: 16 TPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVE---ASEEAISHAQGRLKDGITYIHS 71
Query: 134 GSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS----HARMWV 189
+ + +++++ + + ++ D WL G ++ +A
Sbjct: 72 RFEDAQLPRRYDNIVLTHVLEHIDDPVALLK---RINDDWLAEGGRLFLVCPNANAVSRQ 128
Query: 190 APIRSGLGDQKQQDYEGALDDWYSFLKETKTYYG---------VDM-SVLTKPFSEEQKK 239
++ G+ E + T + K + Q
Sbjct: 129 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANFQWD 188
Query: 240 YYLQTSLWSN 249
LQT + S
Sbjct: 189 QILQTDILSK 198
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.5 bits (86), Expect = 0.001
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGS 135
+GK V D+G G+G+L+ + GA++V VE K + D + + +V G
Sbjct: 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF--KVFIGD 102
Query: 136 VEDIVLPEKVDVIIS 150
V + +VD++I
Sbjct: 103 VSE--FNSRVDIVIM 115
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATK-MSDHARTLVKANNLQDVVEVIEGS 135
G TVL+ G+GSG ++++ ++A +V + E K D A+ K + +E
Sbjct: 99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE- 157
Query: 136 VEDIVLPEKVDVIISEWMG-YFLLRESMFDSVIC 168
P+ VD I + G ++ FD+V
Sbjct: 158 -----WPDNVDFIHKDISGATEDIKSLTFDAVAL 186
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.9 bits (84), Expect = 0.003
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
+ VLDV TG G +A A KV A + T+ N VE ++G E
Sbjct: 16 NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74
Query: 139 IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ ++ I++ + S + R LK G +
Sbjct: 75 MPFTDERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLL 115
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.003
Identities = 13/149 (8%), Positives = 37/149 (24%), Gaps = 21/149 (14%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN--------LQD 127
G+T++D+G+G + + SA + + + ++ Q
Sbjct: 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQH 112
Query: 128 VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187
+ ++ + + + + + A
Sbjct: 113 ACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP 172
Query: 188 WVAPIRSGLGDQKQQDYEGALDDWYSFLK 216
++ ALD + L+
Sbjct: 173 ------------DLASFQRALDHITTLLR 189
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 29/160 (18%)
Query: 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTL----VKANNLQDV 128
+ + +D+GTG+ + + AT++ D V+ NNL D+
Sbjct: 56 DSDKSTLRRGIDIGTGASCIYPLLGAT--LNGWYFLATEVDDMCFNYAKKNVEQNNLSDL 113
Query: 129 VEVIEGSVEDIVLP-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
++V++ + +++ D + + E+ + R P+ V
Sbjct: 114 IKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNS--RNPRRPPPSSVNT 171
Query: 182 PSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
+ G L+ + ++
Sbjct: 172 GGITEIMAEG--------------GELEFVKRIIHDSLQL 197
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.004
Identities = 34/263 (12%), Positives = 70/263 (26%), Gaps = 41/263 (15%)
Query: 49 FLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGK-TVLDVGTGSGILAIWSAQAGARKVYAV 107
FL H E + MD I + + +L +G G+G + + + V
Sbjct: 10 FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 69
Query: 108 EAT--------KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVIIS 150
+ + LV + + V+ +K D I
Sbjct: 70 CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 129
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMY---PSHARMWVAPIR---SGLGDQKQQDY 204
M Y++ + + L M S + W + S Y
Sbjct: 130 IQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQY 186
Query: 205 EGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKN 264
+ DD L G+ + + ++ + +L D + T
Sbjct: 187 ITS-DDLTQMLDNL----GLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTETCNFNAT 241
Query: 265 IDCSTATVDDIREVRSKFLSSIR 287
++R++ ++
Sbjct: 242 APP---------DLRAELGKDLQ 255
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.81 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.74 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.74 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.71 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.66 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.62 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.62 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.61 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.6 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.57 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.57 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.57 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.56 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.55 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.54 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.54 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.52 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.5 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.48 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.46 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.46 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.46 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.44 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.41 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.4 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.4 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.38 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.38 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.38 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.37 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.37 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.36 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.36 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.34 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.33 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.32 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.3 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.3 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.28 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.28 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.28 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.26 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.22 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.22 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.1 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.08 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.07 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.05 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.04 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.87 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.76 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.73 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.73 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.65 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.64 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.64 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.59 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.57 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.57 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.51 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.5 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.48 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.48 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.47 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.46 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.44 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.36 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.25 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.22 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.19 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.17 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.15 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.11 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.97 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.8 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.78 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.65 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.57 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.29 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.97 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.96 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.75 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.67 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.58 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.55 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.53 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.42 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.38 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.18 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.02 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.78 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.68 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.4 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.97 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.87 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.63 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.56 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.13 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.08 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.85 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.69 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.68 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.68 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.67 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.33 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.32 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.1 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.06 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.89 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.77 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.55 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.51 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 92.26 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.18 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.11 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.03 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.73 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.72 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.59 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.4 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.35 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.21 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.14 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.11 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.87 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.86 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.56 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.24 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.18 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.09 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.99 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 89.64 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.23 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.05 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 88.56 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.48 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.4 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.39 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 88.1 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.62 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.02 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 87.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.96 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 86.7 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 86.59 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.38 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.28 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 85.94 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 85.87 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.69 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.94 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.9 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 84.37 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.91 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.71 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.62 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.2 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 82.88 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 82.85 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 82.7 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 82.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.25 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 81.19 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 80.96 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.73 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.69 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 80.44 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-55 Score=419.77 Aligned_cols=321 Identities=32% Similarity=0.594 Sum_probs=281.3
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016320 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.||++|+++..|..||+|..|++.|.++|.++....++++|||||||+|.+++++|++|+++|+|+|.|+++..|+++++
T Consensus 2 ~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~ 81 (328)
T d1g6q1_ 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred CcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 48999999999999999999999999999887666789999999999999999999999999999999988899999999
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016320 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~ 200 (391)
.+++.++++++++++.+++++ +++|+|+++++.+.+.++..+..++.++.++|||||+++|..+++|++|+++..
T Consensus 82 ~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~---- 157 (328)
T d1g6q1_ 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ---- 157 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH----
T ss_pred HhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHH----
Confidence 999999999999999999887 799999999999999999999999999999999999999999999999997642
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016320 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
.+......| ++++|+|++++ ......++.+..+.+.++++.|..+..+||.+...+++ ....
T Consensus 158 --l~~~~~~~~-------~~~~G~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 219 (328)
T d1g6q1_ 158 --YKDEKLNYW-------QDVYGFDYSPF--------VPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKS 219 (328)
T ss_dssp --HHHHHHHHT-------TCBTTBCCTTH--------HHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEE
T ss_pred --HHHHhcccc-------ccccccccchh--------hhhhccCcEEEEecCceeecCceeEEEecccccchhhc-ceee
Confidence 223334556 48899999988 33445567888888889999999999999999988887 7788
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016320 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
.++++++ ++|+||||++||+++|++.. +..++.|||+|. .+.|||+|++|+|++|+.|++||+|++++.+.++.+
T Consensus 220 ~~~~~~~-~~g~~hg~~~wFd~~l~~~~---~~~~i~lST~P~-~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~ 294 (328)
T d1g6q1_ 220 NFKLTAK-RQDMINGIVTWFDIVFPAPK---GKRPVEFSTGPH-APYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK 294 (328)
T ss_dssp EEEEEBC-SSCEEEEEEEEEEEECCCCT---TSCCCEEECSTT-SCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETT
T ss_pred eEEEEec-CCcEEEEEEEEEEEEccCCC---CCCceEEeCCCC-CCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCC
Confidence 8999988 99999999999999996531 145689999994 889999999999999999999999999999999999
Q ss_pred CCeeeEEEEEEEEeccc--ccc-CCcccceee
Q 016320 361 NHRLLEVEFSCEIREST--GQI-LPPIKNKFY 389 (391)
Q Consensus 361 ~~r~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 389 (391)
++|.++|+++|.++... |+. .-++.++|.
T Consensus 295 ~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (328)
T d1g6q1_ 295 NNRDLNIKISYKFESNGIDGNSRSRKNEGSYL 326 (328)
T ss_dssp EEEEEEEEEEEEEECCSSTHHHHCEEEEEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCcccceeccceEe
Confidence 99999999999876543 332 334444554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-55 Score=415.05 Aligned_cols=305 Identities=36% Similarity=0.667 Sum_probs=272.3
Q ss_pred hhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC
Q 016320 46 TYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL 125 (391)
Q Consensus 46 ~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~ 125 (391)
+|+++..|..||+|..|++.|+++|.++....++++|||||||+|.+++++|++|+++|+|+|.|++...|+++++.+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 47888899999999999999999998776667899999999999999999999999999999999656788889999999
Q ss_pred CCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchhhc
Q 016320 126 QDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDY 204 (391)
Q Consensus 126 ~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~ 204 (391)
.++|+++++|+.+++.+ +++|+|+++++.+.+.++..++.+++++.++|||||.+||..+++|++|+++.. .+
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~------~~ 154 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQ------YK 154 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH------HH
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHH------HH
Confidence 99999999999999887 899999999999999999999999999999999999999999999999997532 12
Q ss_pred cccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeEEEE
Q 016320 205 EGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLS 284 (391)
Q Consensus 205 ~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~~~~ 284 (391)
.....+| ++++|+|++++. .....++.+....+.+++++|+.+.++||.+...+++ .+...+++
T Consensus 155 ~~~~~~~-------~~~~g~d~~~~~--------~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l-~~~~~~~~ 218 (316)
T d1oria_ 155 DYKIHWW-------ENVYGFDMSCIK--------DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCL 218 (316)
T ss_dssp HHHTTTT-------TCBTTBCCHHHH--------HHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGG-SEEEEEEE
T ss_pred hhhcccc-------cccccccchhhh--------hhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCc-cEEEEEEE
Confidence 2334556 478999999883 3344467778788889999999999999999888887 77888999
Q ss_pred EEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCCCee
Q 016320 285 SIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRL 364 (391)
Q Consensus 285 ~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~r~ 364 (391)
+++ ++|+||||++||+++|.++ .+++.|||+|. .+.|||+|++|+|++|+.|++||.|.+++++.++.+++|+
T Consensus 219 ~~~-~~g~~hg~~~wFd~~l~~~-----~~~v~lST~P~-~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~ 291 (316)
T d1oria_ 219 QVK-RNDYVHALVAYFNIEFTRC-----HKRTGFSTSPE-SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRD 291 (316)
T ss_dssp EBC-SSEEEEEEEEEEEEECTTS-----SSCCEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTC
T ss_pred eec-CCceEEEEEEEEEEEeeCC-----CCCeEEECCCC-cCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCce
Confidence 988 9999999999999999754 56799999994 7889999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeccccc
Q 016320 365 LEVEFSCEIRESTGQ 379 (391)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (391)
++++++|.+++....
T Consensus 292 ~~~~~~~~~~~~~~~ 306 (316)
T d1oria_ 292 LDFTIDLDFKGQLCE 306 (316)
T ss_dssp EEEEEEEEEECSSCE
T ss_pred EEEEEEEEecCeeec
Confidence 999999999887643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-54 Score=406.26 Aligned_cols=303 Identities=35% Similarity=0.655 Sum_probs=268.1
Q ss_pred hhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHc
Q 016320 44 FCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN 123 (391)
Q Consensus 44 ~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~ 123 (391)
|++|+++..|..||+|..|++.|.++|.+.....++++|||||||+|.+++++|++|+++|+|+|.|+....|++++..+
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~ 80 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 80 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999877789999999999999999999999999999999994445678888888
Q ss_pred CCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchh
Q 016320 124 NLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQ 202 (391)
Q Consensus 124 ~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~ 202 (391)
++.++|+++++|+.++..+ ++||+|+|+++++++..+..++.++.++.++|+|||+++|..+++|++|+++..
T Consensus 81 ~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~------ 154 (311)
T d2fyta1 81 KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVN------ 154 (311)
T ss_dssp TCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH------
T ss_pred CCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHH------
Confidence 9989999999999999877 899999999999999999999999999999999999999999999999997531
Q ss_pred hccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeEE
Q 016320 203 DYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282 (391)
Q Consensus 203 ~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~~ 282 (391)
.+......| .+++|+|++++ .+....++.+..+.+..++++|+.+.++||.+...+++ .....|
T Consensus 155 ~~~~~~~~~-------~~~~G~d~~~~--------~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~ 218 (311)
T d2fyta1 155 KHADRIAFW-------DDVYGFKMSCM--------KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDF 218 (311)
T ss_dssp HHHHHTGGG-------GCBTTBCCGGG--------HHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEE
T ss_pred HHHhhhccc-------cccccccccch--------hhccccccEEEecChhheecCCEeEEEeccCcCccccc-cEEEEE
Confidence 223334556 48899999988 33344567788888999999999999999999888887 778889
Q ss_pred EEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCCC
Q 016320 283 LSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENH 362 (391)
Q Consensus 283 ~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~ 362 (391)
+++++ ++|++|||++||+++|... .++++.|||+|. .+.|||+|++|+|++|+.|++||+|++++++.++..+.
T Consensus 219 ~~~~~-~~g~~~g~~~Wfd~~f~~~----~~~~~~lST~P~-~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~ 292 (311)
T d2fyta1 219 TLKIT-RTSMCTAIAGYFDIYFEKN----CHNRVVFSTGPQ-STKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDP 292 (311)
T ss_dssp EEEBC-SCEEEEEEEEEEEEEECTT----CSSCEEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCT
T ss_pred Eeeec-CCcceEEEEEEEEEEEECC----CCCceEEeCCCC-cCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCC
Confidence 99988 9999999999999999642 146799999994 78899999999999999999999999999999999999
Q ss_pred eeeEEEEEEEEe
Q 016320 363 RLLEVEFSCEIR 374 (391)
Q Consensus 363 r~~~~~~~~~~~ 374 (391)
|+|+++++|+.+
T Consensus 293 r~~~~~~~~~~~ 304 (311)
T d2fyta1 293 RSLTVTLTLNNS 304 (311)
T ss_dssp TSEEEEEEETTE
T ss_pred EEEEEEEEEeCC
Confidence 998888876544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=1.9e-19 Score=162.10 Aligned_cols=143 Identities=21% Similarity=0.317 Sum_probs=106.4
Q ss_pred hhhhhhhhhhhhH--hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016320 42 NYFCTYAFLYHQK--EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 42 ~y~~~~~~~~~~~--~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
+||+.++.+|+.. ....+......+...+.......++++|||||||+|.++..+++.|+ +|+|||+| .|++.|++
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~ 81 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARR 81 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccc
Confidence 4677777777651 11111111222333344444455678999999999999999999998 79999999 99999999
Q ss_pred HHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016320 119 LVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 119 ~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++..+++. ++++++|+++++++++||+|+|..-............+++.++++|||||++++...++
T Consensus 82 ~~~~~~~~--i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 82 KAKERNLK--IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp HHHHTTCC--CEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred cccccccc--chheehhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 99988774 99999999999988999999984322222233456788999999999999999865443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.79 E-value=1.6e-19 Score=162.49 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=105.7
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016320 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+.|+.+|+. ++.....+..+.+.+.+.+. ..++++|||||||+|.++..+++.|. +|+|||.| .|++.|+++
T Consensus 2 ~y~~~A~~YD~--l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~ 78 (246)
T d1y8ca_ 2 CYNKFAHIYDK--LIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp CHHHHHHHHHH--HTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccc
Confidence 57788888875 23323334444444433321 34568999999999999999999988 79999999 999999999
Q ss_pred HHHcCCCCcEEEEEcccccCCCCCcccEEEE--ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 120 VKANNLQDVVEVIEGSVEDIVLPEKVDVIIS--EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs--~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+...++. ++++++|+.++.++++||+|+| ..+.++ .....+..+++.++++|+|||.+++.
T Consensus 79 ~~~~~~~--v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 79 FRSQGLK--PRLACQDISNLNINRKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHTTCC--CEEECCCGGGCCCSCCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCcc--ceeeccchhhhcccccccccceeeeeeecc-CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9888774 9999999999988899999998 333333 33446788999999999999999875
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=5.1e-18 Score=151.33 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=95.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
..+.+.....++.+|||||||+|.++..+++.++ +|+|||+| .|++.|++++..+++++ +.++++|+++++++ ++|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCTTCE
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccc-cccccccccccccccccc
Confidence 3455666678999999999999999999999886 79999999 99999999999988865 99999999999877 899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+|+|.. .+.+..++..+++.+.++|||||++++.
T Consensus 84 D~v~~~~---~l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 84 DIITCRY---AAHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp EEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeeeec---eeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 9999933 2333345789999999999999998774
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.2e-17 Score=149.91 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
....+.+...+...++.+|||||||+|.++..+++. |+ +|+|||+| .|++.|++++...++.++|+++++|+.++..
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 344455777778889999999999999999998886 55 89999999 9999999999999999999999999999865
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++||+|+|..+.+.+ .++..++.++.++|||||++++...
T Consensus 98 ~~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 98 NEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 6899999994432222 3567899999999999999988654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.1e-17 Score=147.69 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=100.7
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016320 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 41 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
++||+.|..+.+... -....+...+...+.+.+ .++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~ 78 (226)
T d1ve3a1 3 KEYYRVFPTYTDINS-QEYRSRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREY 78 (226)
T ss_dssp HHHHHHCSTTTCTTS-HHHHHHHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhh
Confidence 456666644333210 011223344445555554 3668999999999999999999987 79999999 999999999
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 120 ~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+...+.. +.++++|+.+++++ ++||+|+|..+-.++. ..++..+++.+.++|||||.+++..
T Consensus 79 ~~~~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 79 AKSRESN--VEFIVGDARKLSFEDKTFDYVIFIDSIVHFE-PLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp HHHTTCC--CEEEECCTTSCCSCTTCEEEEEEESCGGGCC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccc--ccccccccccccccCcCceEEEEecchhhCC-hhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 8887654 78899999998876 8999999954333332 2357788999999999999988653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=1.5e-17 Score=147.65 Aligned_cols=108 Identities=26% Similarity=0.267 Sum_probs=91.2
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEE
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVI 148 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~I 148 (391)
.+.....++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++++..+..+ ++++++|+++++++ ++||+|
T Consensus 8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 8 MQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSCTTCEEEE
T ss_pred HHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccc-ccccccccccccccccccccc
Confidence 3445567889999999999999999999987 79999999 99999999999988765 99999999999876 899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|... +.+-.+...++.++.++|||||++++.
T Consensus 86 ~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 86 TCRIA---AHHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp EEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccc---ccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98432 233345778999999999999998864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=7.9e-18 Score=150.57 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=96.6
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016320 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
..+||+.++..|+. +.+...+..+.+.+...+ ...++.+|||+|||+|.++..+++.|+ +|+|+|+| .|++.|
T Consensus 5 ~~~~yd~~a~~Yd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a 80 (246)
T d2avna1 5 SWEFYDRIARAYDS---MYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVA 80 (246)
T ss_dssp HHHHHHHHHHHHGG---GGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccc
Confidence 34688888877765 344444444443333221 123668999999999999999999988 79999999 999998
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+++. . ..++.+|+++++++ ++||+|+|. ...+.+-.+...+++.+.++|||||++++..
T Consensus 81 ~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~--~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 81 REKG----V---KNVVEAKAEDLPFPSGAFEAVLAL--GDVLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHHT----C---SCEEECCTTSCCSCTTCEEEEEEC--SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc----c---cccccccccccccccccccceeee--cchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 8752 2 24678999998876 899999983 2222233456788999999999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=8.3e-17 Score=147.47 Aligned_cols=115 Identities=22% Similarity=0.179 Sum_probs=96.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 142 (391)
+.+.+.......++.+|||||||+|.++..+++. |+ +|+|||+| .|++.|+++....++.++++++++|+.+++++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 3444555556678899999999999999999886 65 79999999 99999999999999998999999999999877
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++||+|+|..+. .+-.+...++.++.++|||||++++..
T Consensus 134 ~sfD~V~~~~~l---~h~~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 134 NSYDFIWSQDAF---LHSPDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp TCEEEEEEESCG---GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhccchh---hhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence 899999984322 222357789999999999999988653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=1.7e-16 Score=136.24 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=93.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
.+..+...+...++.+|||+|||+|.+++.+|+.+. +|+|+|++ .+++.|+++++.+++.++++++++|+.+...+ +
T Consensus 21 ir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 344555556678899999999999999999998755 89999999 99999999999999988899999999887655 8
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.||+|++.... .....+++.+.++|||||.+++.
T Consensus 100 ~~D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 100 DIDIAVVGGSG------GELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp CEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcCEEEEeCcc------ccchHHHHHHHHHhCcCCEEEEE
Confidence 99999985421 23567889999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=4.6e-16 Score=134.87 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~ 154 (391)
..++.+|||||||+|..+..+++.|. +|+|||+| .|++.|++.++..++++ +++...|+.++.++++||+|+|..+.
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccccccccEEEEeeee
Confidence 34556999999999999999999998 79999999 99999999999988875 89999999998888999999995544
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++.. .....+++.+.++|+|||++++.
T Consensus 106 ~~~~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 106 MFLEA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGSCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 44433 35778999999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.66 E-value=3e-16 Score=141.32 Aligned_cols=108 Identities=22% Similarity=0.256 Sum_probs=91.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~Ivs~~ 152 (391)
..++++|||||||+|..+..+++.|.++|+|||+| .|++.|+++....+...++.++++|+....+ .++||+|+|..
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 35778999999999999999999888789999999 9999999999888877789999999976544 47899999954
Q ss_pred -ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 -MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 -~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+.+..+..+..++..+.++|||||+++..
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 3444555567888999999999999998864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=5.6e-16 Score=138.95 Aligned_cols=109 Identities=24% Similarity=0.352 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
....+++.+. ..++++|||+|||+|.+++.+++.|+ +|+|+|+| .|++.|+++++.|++. ++++++|+.+....
T Consensus 108 ~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~~ 182 (254)
T d2nxca1 108 RLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPF 182 (254)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGG
T ss_pred hHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccccccc
Confidence 4444555554 35789999999999999999999987 79999999 9999999999999986 67899998775434
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++||+|+++.+. ..+..+++.+.++|||||+++++
T Consensus 183 ~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 183 GPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 899999996532 23567788899999999999864
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=1.1e-15 Score=132.10 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=91.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+.+...++++|||+|||+|.+++.+++.+. +|+++|+| .+++.|+++++.+++.+ +++++.+|+.+...+++||
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD 121 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYN 121 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEE
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCce
Confidence 345556667889999999999999999998765 89999999 99999999999999875 5999999998744448999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|+|+++.+. .......+++.+.++|+|||.+++
T Consensus 122 ~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEEE
Confidence 9999775332 223457789999999999998865
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.6e-16 Score=138.03 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
..++.+|||||||+|.++..+++.+..+|+|||+| .|++.|++++...+..+ ++++++|++++.++ ++||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc-cccccccccccccccccccccccccc
Confidence 44568999999999999998876666689999999 99999999988776643 79999999998765 89999999544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
-+++.. ..+..++..++++|+|||.+++..
T Consensus 137 l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 137 IGHLTD-QHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchh-hhhhhHHHHHHHhcCCcceEEEEE
Confidence 333332 235678999999999999998753
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=4.8e-15 Score=130.90 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=87.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| +|++.|+++++..+....+.+..+|+.+++. +++|+|+|..
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~~ 116 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 116 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEES
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEee
Confidence 57789999999999999999884 23389999999 9999999999988887789999999887754 6889999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+++. ..+...+++.++++|||||.+++.
T Consensus 117 ~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 117 TLQFLP-PEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp CGGGSC-GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccccC-hhhHHHHHHHHHHhCCCCceeecc
Confidence 444443 336778999999999999999875
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=7.2e-15 Score=133.86 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.+...+|.+|||||||.|.++..+++. |+ +|+|||+| ++++.|++++++.++..++.+...|.+++ +++|
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~f 118 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPV 118 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCC
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccch
Confidence 44666667788999999999999999999887 76 89999999 99999999999999988899999888776 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|.|+|..+...+.. ...+.+++.+.++|||||++++...
T Consensus 119 D~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 119 DRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp SEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEe
Confidence 99999544333322 3578899999999999999987643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.6e-15 Score=138.04 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC---cEEEEEccccc
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD---VVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~---~v~~~~~d~~~ 138 (391)
.+.+.+.+...+...++++|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++....+... ...+...++..
T Consensus 41 ~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 334444444444445678999999999999999999997 79999999 99999999988766542 23455555543
Q ss_pred C----CCCCcccEEEEc--cccccccC---cchHHHHHHHHhccccCCeEEEcc
Q 016320 139 I----VLPEKVDVIISE--WMGYFLLR---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~----~~~~~~D~Ivs~--~~~~~l~~---e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ +..++||+|+|. .+.++... ...+..+++.+.++|||||++|+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2 334789999983 34444332 235678999999999999999875
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.57 E-value=4.5e-15 Score=135.64 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=92.8
Q ss_pred HHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 64 DAYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 64 ~~~~~~i~~~~-~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
+.|.+.+...+ ...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|+++....+.. ++++++|+.++
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~--~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSE--EEEEESCTTTC
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccc--ccccccccccc
Confidence 34455554433 3456789999999999999999885 2 2379999999 9999999999887763 99999999998
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++++||+|+|..+. .+-.+...+++.+.++|||||.++....
T Consensus 90 ~~~~~fD~v~~~~~l---~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 90 ELNDKYDIAICHAFL---LHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCSSCEEEEEEESCG---GGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCceEEEEehhh---hcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 888899999995432 2334567899999999999999886543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.57 E-value=2.7e-15 Score=124.31 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=86.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEcc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~Ivs~~ 152 (391)
..++++|||+|||+|.+++.++.+|+++|+++|.+ .+++.++++++.+++.++++++++|+..+ ...++||+|++++
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 35789999999999999999999999999999999 99999999999999999999999998774 2237899999987
Q ss_pred ccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016320 153 MGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~ 184 (391)
. |. .......++.+ .++|+|+|.++++.
T Consensus 92 P-y~---~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 P-YA---KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp S-SH---HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred h-hc---cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 4 22 12233444443 47899999998763
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=1.8e-15 Score=130.27 Aligned_cols=108 Identities=12% Similarity=0.013 Sum_probs=85.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-----------CCcEEEEEcccccCCC
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-----------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~ 141 (391)
+...++.+|||+|||+|..+..+|+.|+ +|+|+|+| .|++.|+++++..+. ...++++++|+.++..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 3467889999999999999999999998 79999999 999999998865432 1235788888888754
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~--~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. ..||+|++..+...+.. .....+++.+.++|||||.+++.
T Consensus 95 ~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 3 68999998554444333 34678899999999999988753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.56 E-value=2.5e-15 Score=132.84 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=81.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~ 155 (391)
.++++|||||||+|.++..+++.|. +|+|||+| .+++.|+++.. ++++++++++.++.++++||+|+|..+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~v-- 90 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHV-- 90 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESC--
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccce--
Confidence 4677899999999999999999887 69999999 89999987643 349999999999988899999998332
Q ss_pred cccCcchHHHHHHHHh-ccccCCeEEEccc
Q 016320 156 FLLRESMFDSVICARD-RWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~l~~e~~~~~~l~~~~-~~LkpgG~~i~~~ 184 (391)
+.+-.+...++.++. ++|+|||.+++..
T Consensus 91 -leh~~d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 91 -LEHIDDPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp -GGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -eEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence 333345667788776 8999999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=2.5e-14 Score=130.64 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=94.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.+...+|.+|||||||.|.++..+|+. |+ +|+||++| +.++.|+++++..++.+++++...|.... +++|
T Consensus 51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~f 127 (291)
T d1kpia_ 51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV 127 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--cccc
Confidence 44556677889999999999999999988765 76 89999999 99999999999999999999999987654 4789
Q ss_pred cEEEEc-cccccccC-----cchHHHHHHHHhccccCCeEEEcccce
Q 016320 146 DVIISE-WMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs~-~~~~~l~~-----e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|.|+|. .+.++... ....+.+++.+.++|||||++++...+
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 999993 33333221 134688999999999999999876543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=2.8e-14 Score=129.97 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=95.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+.+.+.+...+|.+|||||||.|.+++.+|+. |+ +|+||.+| ..++.|++++++.++.+++++..+|..+++ ++|
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~f 128 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPV 128 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCC
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccc
Confidence 44566677889999999999999999987776 76 89999999 999999999999999999999999998774 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
|.|+|-.+-..... .....+++++.++|||||.+++...+
T Consensus 129 D~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 129 DRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 99999433222222 23578999999999999999876543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.54 E-value=8.9e-15 Score=131.59 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=87.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~ 147 (391)
+.+.+...++.+|||+|||+|.++..++..+..+|++||+| .|++.|+++.... +.++++++|+.++.++ ++||+
T Consensus 85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEE
T ss_pred HHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccce
Confidence 33444456678999999999999988776656689999999 9999999876533 3489999999999876 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|.++.+++.. .++..++++++++|+|||.+++..
T Consensus 162 I~~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 162 IVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeeccccccch-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence 999665444432 246688999999999999988643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=9.5e-15 Score=127.22 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=87.2
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH
Q 016320 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 42 ~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~ 120 (391)
+.|+.++..|+.. +......+..-.+.+... .++.+|||||||+|.++..++ +++|||+| .|++.|+++
T Consensus 4 ~~f~~~a~~Yd~w-~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~- 73 (208)
T d1vlma_ 4 HIFERFVNEYERW-FLVHRFAYLSELQAVKCL---LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR- 73 (208)
T ss_dssp HHHHHTHHHHHHH-HHHTHHHHHHHHHHHHHH---CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhh---CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-
Confidence 3566666666542 112222222223344443 345679999999999877663 57999999 999988763
Q ss_pred HHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 121 KANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 121 ~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
.++++++|+++++++ ++||+|+|..+ +.+-.++..+++++.++|+|||.+++..
T Consensus 74 -------~~~~~~~d~~~l~~~~~~fD~I~~~~~---l~h~~d~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 74 -------GVFVLKGTAENLPLKDESFDFALMVTT---ICFVDDPERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp -------TCEEEECBTTBCCSCTTCEEEEEEESC---GGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------ccccccccccccccccccccccccccc---cccccccccchhhhhhcCCCCceEEEEe
Confidence 289999999999876 79999999443 3333457889999999999999988654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.1e-14 Score=127.15 Aligned_cols=119 Identities=13% Similarity=-0.062 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC----------------C
Q 016320 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN----------------L 125 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~----------------~ 125 (391)
+..+.+.+.+.+...++.+|||+|||+|..+..+|+.|+ +|+|||+| .+++.|++...... .
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 444555555555566889999999999999999999999 79999999 89998887754321 1
Q ss_pred CCcEEEEEcccccCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 126 QDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 126 ~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+++++++|+.++.. .+.||+|+...+.+.+.. .....++..+.++|||||.+++.
T Consensus 109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcEEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEE
Confidence 2358999999988753 378999998554343333 35678899999999999987754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.50 E-value=3.6e-14 Score=126.44 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=86.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
..|...+...+|.+|||+|||+|.++..+|++ + ..+|+++|.+ ++++.|+++++.++..+++++.++|+.+...++.
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 34566677789999999999999999999986 3 3489999999 9999999999987766779999999998755588
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
||.|+++.. ....+++.+.+.|||||+++..
T Consensus 155 fD~V~ld~p--------~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 155 YDAVIADIP--------DPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEE
T ss_pred eeeeeecCC--------chHHHHHHHHHhcCCCceEEEE
Confidence 999998642 2234678888999999998854
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.48 E-value=1.5e-13 Score=123.32 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=90.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+...+...+.++|||||||+|.++..+++.. ..+++++|..++++.+++++...++.++++++.+|+.+. .+.+||+
T Consensus 71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D~ 149 (253)
T d1tw3a2 71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADA 149 (253)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEE
T ss_pred HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cccchhh
Confidence 34455555566899999999999999999874 347999998888999999999999999999999998764 3468999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|++..+-+.+..+ ....+++++++.|||||.+++..
T Consensus 150 v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 150 IILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9985543433322 34578999999999999988653
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.3e-13 Score=128.16 Aligned_cols=111 Identities=25% Similarity=0.309 Sum_probs=91.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++++|||+|||+|.+++.+++.|+++|+++|+| .+++.|+++++.||+.++++++++|+.+.. ..++||+|++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 4689999999999999999999999899999999 999999999999999888999999987641 2378999999
Q ss_pred ccccccccCc------chHHHHHHHHhccccCCeEEEccccee
Q 016320 151 EWMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 151 ~~~~~~l~~e------~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
++........ .....++....++|+|||.++.+.++.
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8854432221 123456777889999999998775543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.7e-13 Score=122.23 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=96.1
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
|--+..++.+.+.+..... .++.+|||+|||+|.+++.++.. ...+|+|+|+| .+++.|+++++.+++++ |+++++
T Consensus 88 lIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~-v~~~~~ 165 (274)
T d2b3ta1 88 LIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQS 165 (274)
T ss_dssp CCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECC
T ss_pred cccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCccc-ceeeec
Confidence 4444556666665554433 45678999999999999998876 45589999999 99999999999999964 999999
Q ss_pred ccccCCCCCcccEEEEccccccccC-----------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016320 135 SVEDIVLPEKVDVIISEWMGYFLLR-----------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~~~~~D~Ivs~~~~~~l~~-----------e------------~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+.+....++||+|+|++. |.... | .....++....++|+|||.+++...
T Consensus 166 d~~~~~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 166 DWFSALAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp STTGGGTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ccccccCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9887544479999999873 43211 1 1245678888999999999987643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5e-14 Score=124.67 Aligned_cols=105 Identities=25% Similarity=0.268 Sum_probs=83.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~D~Ivs~~ 152 (391)
.++.+|||||||+|.++..+++.+..+|++||+| .|++.|+++++..+. ++.++..+.... .++ ++||.|+.+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--ccccccccccccccccccccccceeecc
Confidence 4678999999999999999998876689999999 999999999877653 488888887654 333 7899999765
Q ss_pred cc--ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MG--YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~--~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. +.+.+..+...+++.+.|+|||||++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 42 23333345678899999999999998753
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.1e-13 Score=124.46 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=87.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
+..+...+ .++.+|||+|||+|.+++.+|+.|+.+|+|+|+| .+++.++++++.|++.++|+++++|+.++...+.|
T Consensus 98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~ 175 (260)
T d2frna1 98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIA 175 (260)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCC
Confidence 33454443 5789999999999999999999987799999999 99999999999999999999999999998766889
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
|.|+++++... ..+++...++|++||.+.
T Consensus 176 D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 176 DRILMGYVVRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp EEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCch-------HHHHHHHHhhcCCCCEEE
Confidence 99998654322 124555667899999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.7e-13 Score=122.74 Aligned_cols=111 Identities=28% Similarity=0.342 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDI 139 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~ 139 (391)
.=...|...+...+|.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. ...+++.++++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 33456777778889999999999999999999997 4 3489999999 9999999998764 3445699999999988
Q ss_pred CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++ +.||.|+++.. +...++..+.++|||||.++..
T Consensus 163 ~~~~~~fDaV~ldlp--------~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 163 ELPDGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp CCCTTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred cccCCCcceEEEecC--------CHHHHHHHHHhccCCCCEEEEE
Confidence 766 89999997542 2335677889999999998743
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=2.7e-13 Score=118.43 Aligned_cols=105 Identities=22% Similarity=0.172 Sum_probs=82.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+|+. | ..+|+++|.+ .+++.|+++++..++.+ +.++++|..+.... +
T Consensus 65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGC
T ss_pred HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHcccccc
Confidence 34555667788999999999999999999886 4 3479999999 99999999999998876 88899998875444 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+||+|++... +.+ .++ .+.+.|||||+++.
T Consensus 144 ~fD~I~~~~~---~~~--~p~----~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 144 PYDVIFVTVG---VDE--VPE----TWFTQLKEGGRVIV 173 (213)
T ss_dssp CEEEEEECSB---BSC--CCH----HHHHHEEEEEEEEE
T ss_pred chhhhhhhcc---HHH--hHH----HHHHhcCCCcEEEE
Confidence 8999998542 111 222 34466999999874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7.5e-13 Score=119.74 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+++|+|+| .|++.|++.. .+++++++|+.+++++ +.||+|++...
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 156 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 156 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecCC
Confidence 4668999999999999999998853 379999999 9999887653 2389999999999876 88999998322
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+. .++++.|+|||||.+++.
T Consensus 157 ---~~-------~~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 157 ---PC-------KAEELARVVKPGGWVITA 176 (268)
T ss_dssp ---CC-------CHHHHHHHEEEEEEEEEE
T ss_pred ---HH-------HHHHHHHHhCCCcEEEEE
Confidence 11 145678999999999865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=4.8e-13 Score=120.44 Aligned_cols=111 Identities=21% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
.-...|...+...+|.+|||+|||+|.++..+|+. + ..+|+++|.+ ++++.|+++++..++.+++.+...|+.....
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~ 169 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 169 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc
Confidence 33456777788889999999999999999999987 3 3489999999 9999999999999998889999999866544
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
...+|.|+.+.. +...+++.+.++|||||.++..
T Consensus 170 ~~~~D~V~~d~p--------~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 170 EKDVDALFLDVP--------DPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp CCSEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEEE
T ss_pred ccceeeeEecCC--------CHHHHHHHHHhhcCCCCEEEEE
Confidence 478999986542 2345688899999999998753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=4.2e-13 Score=113.01 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=77.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--C-CCCCcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--I-VLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-~~~~~~D~Ivs~~ 152 (391)
.++.+|||+|||+|.+++.++..|+ +|+++|.+ .+++.++++++.+++.+++....+|... . ...++||+|++++
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 4678999999999999999999998 79999999 9999999999999998766555544321 1 1237899999987
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
. |.......+..++. ..+|+|||++++.
T Consensus 119 P-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 119 P-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp C-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred c-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 4 33222223333333 3689999998864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.38 E-value=1.2e-12 Score=113.68 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=85.2
Q ss_pred HHHHHHHh--cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016320 65 AYFNSIFQ--NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 65 ~~~~~i~~--~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 140 (391)
....+|.. .+...++.+|||||||+|..+..+++. +..+|+|||+| .|++.|+++++..+ ++.++.+|.....
T Consensus 41 klaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~ 117 (209)
T d1nt2a_ 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW 117 (209)
T ss_dssp HHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG
T ss_pred HHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc
Confidence 33445543 356678999999999999999999986 55689999999 99999999988764 4899999988764
Q ss_pred CC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~----~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. ..+|+|+++. . .......++..+.++|||||.+++.
T Consensus 118 ~~~~~~~~vd~v~~~~----~-~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 118 KYSGIVEKVDLIYQDI----A-QKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp GTTTTCCCEEEEEECC----C-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccceEEEEEecc----c-ChhhHHHHHHHHHHHhccCCeEEEE
Confidence 33 4566666532 1 2235677899999999999998754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.38 E-value=7.1e-13 Score=112.64 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=86.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----CCCCcccEEE
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----VLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~Iv 149 (391)
..++.+|||++||+|.+++.++..|+++|++||.+ .+++.++++++..+..++++++++|+.++ ....+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 35789999999999999999999999999999999 99999999999999888899999998764 1236899999
Q ss_pred EccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016320 150 SEWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~ 184 (391)
+++. |.. .....++..+ ..+|+++|+++++.
T Consensus 119 lDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 119 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 9984 321 2334455554 36899999988753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-13 Score=124.08 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc--------------------------
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-------------------------- 128 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-------------------------- 128 (391)
..++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++.......
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35678999999999999888887777789999999 999999999876553210
Q ss_pred --E-EEEEccccc----CCC-CCcccEEEEccc-cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 129 --V-EVIEGSVED----IVL-PEKVDVIISEWM-GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 --v-~~~~~d~~~----~~~-~~~~D~Ivs~~~-~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+ .....+... ... .++||+|++..+ .+....+..+..+++.+.++|||||.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0 111111111 112 278999998443 333333346778899999999999998864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.37 E-value=7.9e-13 Score=122.03 Aligned_cols=110 Identities=19% Similarity=0.182 Sum_probs=89.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC-----CCCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI-----VLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-----~~~~~~D~Iv 149 (391)
.++++|||++||+|.+++.++..|+++|++||+| .+++.|+++++.|++. ++++++++|+.+. ...++||+||
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4689999999999999999999999999999999 9999999999999995 4699999999764 1236899999
Q ss_pred EccccccccC------cchHHHHHHHHhccccCCeEEEcccce
Q 016320 150 SEWMGYFLLR------ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l~~------e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+++..+.... ......++....++|+|||+++.+.++
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9885332111 123556788888999999999987654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=5.5e-13 Score=123.39 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=86.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----CCCCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----VLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~D~Ivs 150 (391)
.++++|||++||+|.+++.+|+ |+++|+++|.| .+++.|+++++.|++.+ ++++++|+.++ ...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4689999999999999999886 45589999999 99999999999999965 99999998774 12378999999
Q ss_pred ccccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016320 151 EWMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 ~~~~~~l~~e------~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
++..+..... .....++..+.++|+|||.++.+.++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8854332221 12345777888999999999876554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.36 E-value=2.8e-12 Score=115.05 Aligned_cols=114 Identities=23% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 147 (391)
.+.+.......++|||||||+|.++..++++. ..+++++|+.++++.|+++++..++.++++++.+|+.+ +.|..+|+
T Consensus 72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~~~D~ 150 (256)
T d1qzza2 72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADV 150 (256)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEE
T ss_pred HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-cccccchh
Confidence 34444444455899999999999999999884 33899999888899999999999999999999999876 44567999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|++..+.+.+.. .....+++++++.|||||.+++..
T Consensus 151 v~~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 151 VLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccccccccCc-HHHHHHHHHHHhhcCCcceeEEEE
Confidence 998554443322 235678999999999999888654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.36 E-value=1.2e-12 Score=119.32 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=93.6
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEc
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~ 134 (391)
.-|...+..|....... ..++++|||++||+|.+++.+++.|+ +|++||.| .+++.|+++++.|++.+ +++++++
T Consensus 113 f~dqr~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~ 189 (309)
T d2igta1 113 FPEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 189 (309)
T ss_dssp CGGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS
T ss_pred ccchhHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC
Confidence 33444444444433222 24678999999999999999999998 79999999 99999999999999875 5999999
Q ss_pred ccccCC-----CCCcccEEEEccccccccC-------cchHHHHHHHHhccccCCeEEEcc
Q 016320 135 SVEDIV-----LPEKVDVIISEWMGYFLLR-------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 135 d~~~~~-----~~~~~D~Ivs~~~~~~l~~-------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
|+.++- ..++||+||+++..+.... +..+..++..+.++|+|||.+++.
T Consensus 190 D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 190 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp CHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 997651 2378999999985443221 234566777888999999875543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=2e-12 Score=113.89 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=82.7
Q ss_pred HHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016320 64 DAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 64 ~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 138 (391)
.....+|... ++..+|.+|||||||+|..+..+|+.+ ...|+|||+| .|++.|++++...+ ++.++.+|...
T Consensus 57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~ 133 (230)
T d1g8sa_ 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANK 133 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTC
T ss_pred cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeecc
Confidence 3455666553 446788999999999999999999974 4589999999 99999998876543 37788888776
Q ss_pred CCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 139 IVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~--~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... ...+|++++- ..+........++..+.++|||||.+++.
T Consensus 134 ~~~~~~~~~~v~~i~---~~~~~~~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 134 PQEYANIVEKVDVIY---EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GGGGTTTCCCEEEEE---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccccceeEEee---ccccchHHHHHHHHHHHHhcccCceEEEE
Confidence 532 2345554431 11222345678899999999999988754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=114.79 Aligned_cols=99 Identities=25% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC-Cccc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~-~~~D 146 (391)
...++.+|||||||+|.++..+|+. + ..+|+++|.+ ++++.|++++++.++. ++++++.+|......+ .+||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 4568899999999999999988886 4 4489999999 9999999999876653 3589999998876544 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+|++... +.. .+ +.+.+.|||||+++.
T Consensus 153 ~I~~~~~---~~~--ip----~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 153 AIHVGAA---APV--VP----QALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEECSB---BSS--CC----HHHHHTEEEEEEEEE
T ss_pred hhhhhcc---hhh--cC----HHHHhhcCCCcEEEE
Confidence 9998432 111 12 235577999999874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2e-12 Score=110.03 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=83.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~Ivs~~~ 153 (391)
..+.+|||++||+|.+++.++.+|+++|++||.+ .+++.++++++..+..+ ++++.+|+.++. ...+||+|++++.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccccccccccCEEEEcCc
Confidence 4678999999999999999999999999999999 99999999999888765 899999987652 2378999999984
Q ss_pred cccccCcchHHHHHHHH--hccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICAR--DRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~ 183 (391)
|. ......++..+ ..+|+++|.+++.
T Consensus 121 -Y~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 -FR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 32 22344455554 3579999998875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=4.9e-12 Score=109.24 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=81.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
++..|||||||+|..+..+|+.. -..++|||++ .++..|.+++++.+++| |.++++|+..+. ++ +.+|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCchhhhcccccc
Confidence 34589999999999999988873 3489999999 99999999999999976 999999998763 33 7899888633
Q ss_pred ccccccCcc-----hHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRES-----MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e~-----~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......... ..+.+++.+.++|||||.|++.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 222211110 1257899999999999998764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.4e-12 Score=116.96 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=85.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc----------CCCCcEEEE
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN----------NLQDVVEVI 132 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~----------~~~~~v~~~ 132 (391)
=...|...+...+|.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. ++.+++++.
T Consensus 86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 3445666677889999999999999999999987 4 3489999999 9999999998753 345679999
Q ss_pred EcccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 133 EGSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 133 ~~d~~~~~~--~-~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++|+.+... + ..||.|+.++.. ...++..+.++|||||.++..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~LD~p~--------P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp ESCTTCCC-------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEEE
T ss_pred ecchhhcccccCCCCcceEeecCcC--------HHHHHHHHHHhccCCCEEEEE
Confidence 999987632 2 679999976421 123577889999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.4e-11 Score=106.19 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=68.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
.....+|++|||+|||+|.+++.++..|+.+|+|+|++ .+++.|+++++.++.. ++++.+|+.++ +++||+|+++
T Consensus 41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~--~~~fD~Vi~n 116 (201)
T d1wy7a1 41 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEF--NSRVDIVIMN 116 (201)
T ss_dssp HTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGC--CCCCSEEEEC
T ss_pred hcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhh--CCcCcEEEEc
Confidence 34567899999999999999999999998899999999 9999999999888765 89999998776 4789999998
Q ss_pred cc
Q 016320 152 WM 153 (391)
Q Consensus 152 ~~ 153 (391)
+.
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 84
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.30 E-value=2.8e-12 Score=112.19 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=77.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 146 (391)
.+.+.+...++.+|||||||+|.++..+++.+. +|+++|.+ .+++.|+++.... ++++++++|......+ ++||
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHH
Confidence 355666778999999999999999999999865 89999999 8999999876643 3599999998764333 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.|++... .. ..++ .+.+.|+|||+++.
T Consensus 137 ~Iiv~~a---~~--~ip~----~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 137 RVVVWAT---AP--TLLC----KPYEQLKEGGIMIL 163 (224)
T ss_dssp EEEESSB---BS--SCCH----HHHHTEEEEEEEEE
T ss_pred HHHhhcc---hh--hhhH----HHHHhcCCCCEEEE
Confidence 9997432 11 1223 34467999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.4e-12 Score=118.63 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=85.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-------CC-CCcEEEEEcccc
Q 016320 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-------NL-QDVVEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-------~~-~~~v~~~~~d~~ 137 (391)
..+.+.+...++.+|||||||+|.+++.+|+. ++++++|||++ .+++.|++..+.. |. ..+|+++++|+.
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34455566778899999999999999988775 77789999999 8999988776542 22 235999999998
Q ss_pred cCCCC---CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 138 DIVLP---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~~~---~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+.. ..+|+|+++.+ .+. ..+...+.++.+.|||||.+|..
T Consensus 221 ~~~~~~~~~~advi~~~~~---~f~-~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 221 SEEWRERIANTSVIFVNNF---AFG-PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp SHHHHHHHHHCSEEEECCT---TTC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccCcceEEEEcce---ecc-hHHHHHHHHHHHhCCCCcEEEEe
Confidence 87544 23588887442 222 35677788999999999998854
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.3e-12 Score=115.09 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=76.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC--------------------------
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-------------------------- 127 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-------------------------- 127 (391)
...++.+|||||||+|.+++..+.....+|+|+|.| .|++.|++.++.....-
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 356789999999999998876665555689999999 99999998775432110
Q ss_pred ---cEEEEEcccccCC------C-CCcccEEEEcccccccc-CcchHHHHHHHHhccccCCeEEEcc
Q 016320 128 ---VVEVIEGSVEDIV------L-PEKVDVIISEWMGYFLL-RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ---~v~~~~~d~~~~~------~-~~~~D~Ivs~~~~~~l~-~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.-.++..|+..-. . +++||+|++..+.+... ....+..+++.+.++|||||.++..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1234455654321 1 25799999854333332 2235788899999999999998854
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-12 Score=113.74 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCEEEEECCcccHHHHHHHHc------CC-CeEEEEech-HHHHHHHHHHHHcCCCCcE--EEEEcccccC------C-C
Q 016320 79 GKTVLDVGTGSGILAIWSAQA------GA-RKVYAVEAT-KMSDHARTLVKANNLQDVV--EVIEGSVEDI------V-L 141 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~------g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v--~~~~~d~~~~------~-~ 141 (391)
+.+|||||||+|.++..+++. +. .+++|||+| .|++.|+++++.......+ .+...++.++ . .
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 348999999999988776553 11 258999999 9999999988654332334 3445544332 1 2
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+++||+|+|.. .+.+-.++..+++.+.++|+|||.+++.
T Consensus 121 ~~~fD~I~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 LQKWDFIHMIQ---MLYYVKDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEcc---ceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 38999999833 3333346788999999999999988754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=6.6e-12 Score=112.72 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=95.6
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016320 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 135 (391)
|--+..++.+.+.+.......+..+|||+|||+|.+++.+++....+|+|+|+| .+++.|+++++.+++.+++.+..+|
T Consensus 89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~ 168 (271)
T d1nv8a_ 89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE 168 (271)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecc
Confidence 444455677666655544334457899999999999999888876689999999 9999999999999999999999999
Q ss_pred cccCCCC--CcccEEEEcccccccc---------Ccc---------hHHHHHHHHhccccCCeEEEcccce
Q 016320 136 VEDIVLP--EKVDVIISEWMGYFLL---------RES---------MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 136 ~~~~~~~--~~~D~Ivs~~~~~~l~---------~e~---------~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
..+.... ++||+|||++. |... +|. -+..+.+-+.++|+|||.+++....
T Consensus 169 ~~~~~~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 169 FLEPFKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp TTGGGGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred cccccccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 8775322 68999999873 3321 111 1233334456889999998877553
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=8.3e-12 Score=106.73 Aligned_cols=71 Identities=31% Similarity=0.366 Sum_probs=62.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
....|++|||+|||+|.+++.++..|+++|+++|++ .+++.|++++. +++++++|+.++ +++||+|++++.
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l--~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--SGKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--CCCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc--CCcceEEEeCcc
Confidence 457899999999999999999999999899999999 88998888753 279999999886 478999999873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=3.1e-11 Score=104.04 Aligned_cols=105 Identities=11% Similarity=0.169 Sum_probs=81.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~ 152 (391)
.+..|||||||+|.++..+|+.. -..++|||++ .++..|.+++.+++++| +.++.+|+.++. ++ .++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhcccc
Confidence 34589999999999999988873 4579999999 99999999999999976 999999988763 33 7899988633
Q ss_pred ccccccCc-----chHHHHHHHHhccccCCeEEEcc
Q 016320 153 MGYFLLRE-----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~l~~e-----~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.....-.. -....+++.+.++|||||.+++.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 22211100 01367899999999999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.22 E-value=8.4e-12 Score=108.41 Aligned_cols=103 Identities=24% Similarity=0.298 Sum_probs=81.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 145 (391)
.+.+.+...++.+|||||||+|.++..+++. |. +|+++|.+ ++++.|+++++..++.+ +.++++|..+-..+ .+|
T Consensus 69 ~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd~~~g~~~~~pf 146 (215)
T d1jg1a_ 69 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFPPKAPY 146 (215)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHHhhccCccceEEEecCCCChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCce-eEEEECccccCCcccCcc
Confidence 4455566788999999999999999999986 64 79999999 89999999999999866 99999999875433 899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|.|++... .. .....+ ...|+|||+++.
T Consensus 147 D~Iiv~~a---~~--~ip~~l----~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 147 DVIIVTAG---AP--KIPEPL----IEQLKIGGKLII 174 (215)
T ss_dssp EEEEECSB---BS--SCCHHH----HHTEEEEEEEEE
T ss_pred eeEEeecc---cc--cCCHHH----HHhcCCCCEEEE
Confidence 99998431 11 122333 345899999874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=2.2e-11 Score=106.69 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=85.5
Q ss_pred HHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016320 64 DAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 64 ~~~~~~i~~~---~~~~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 137 (391)
.+...+|..- +...+|.+|||+|||+|..+..+|+. | ..+|+|+|++ .|++.++++++..+ ++..+..|..
T Consensus 56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~ 132 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDAT 132 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTT
T ss_pred cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECC
Confidence 3555666543 45678999999999999999999987 4 3589999999 99999998876543 3777888876
Q ss_pred cCC---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 138 DIV---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~---~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
... . ...+|+|+++.. .......++..+.++|||||.+++.
T Consensus 133 ~~~~~~~~~~~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 133 KPEEYRALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CGGGGTTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccccccceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEEE
Confidence 542 2 268899987542 1234677899999999999998864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=7.1e-11 Score=111.60 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-------CC-CcEEE-EEcc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-------LQ-DVVEV-IEGS 135 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-------~~-~~v~~-~~~d 135 (391)
...|.+.+...++.+|||||||+|.+++.+|+. |.++|+|||++ .|++.|+++++..+ .. ..+.+ +.++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 334555567788999999999999999988875 77789999999 99999998886532 11 11333 3344
Q ss_pred cccCCC-C---CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 136 VEDIVL-P---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~~-~---~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+.+. . ..+|+|+++.. . +...+...+.++.+.|||||.||..
T Consensus 285 f~~~~~~d~~~~~adVV~inn~---~-f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNNF---L-FDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---T-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hhhccccccccccceEEEEecc---c-CchHHHHHHHHHHHhcCCCcEEEEe
Confidence 433211 0 46788887432 2 2345778899999999999998854
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.10 E-value=1.9e-10 Score=97.42 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=82.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC---C-CCcccEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV---L-PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~---~-~~~~D~Ivs 150 (391)
..+.+|||+.||||.+++.++.+||++|+.||.+ ..+...+++++..+..+ ...++..|+.+.. . ..+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4678999999999999999999999999999999 99999999999988754 4677777765531 1 257999999
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016320 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~--~~~LkpgG~~i~~~ 184 (391)
++. |.. .....++..+ ..+|+++|.++++.
T Consensus 122 DPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPP-FHF---NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 984 322 2344555554 36899999998764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.3e-10 Score=100.97 Aligned_cols=104 Identities=16% Similarity=0.358 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~-~~~~D 146 (391)
.+.++|||+|||+|..++.+|++ + ..+|+++|.+ .+++.|+++++..|+.++|+++.+|..++- . .++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 35689999999999999999986 2 3489999999 999999999999999999999999987751 1 25799
Q ss_pred EEEEccccccccCcch-HHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~-~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+|+.+.- .+.. ....+....++|+|||+++....
T Consensus 135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeCc
Confidence 9997521 1111 12235566789999998887654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.07 E-value=3.9e-11 Score=104.84 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc----CC---CeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA----GA---RKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~----g~---~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~ 142 (391)
...++.+|||||||+|.++..+++. |. .+|+++|.+ ++++.|++++...++. .+|.++++|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 4568899999999999998888775 21 379999999 9999998886543221 2499999998875444
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.+||.|++... ... ... .+.+.|||||+++.
T Consensus 157 ~~~fD~Iiv~~a---~~~--~p~----~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 157 NAPYNAIHVGAA---APD--TPT----ELINQLASGGRLIV 188 (223)
T ss_dssp GCSEEEEEECSC---BSS--CCH----HHHHTEEEEEEEEE
T ss_pred ccceeeEEEEee---chh--chH----HHHHhcCCCcEEEE
Confidence 78999998432 111 122 34567999999864
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.5e-10 Score=98.38 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCccc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~D 146 (391)
.+.++|||||||+|..++.+|++ . ..+|+++|.+ ...+.|+++++..++.++++++.+|+.+.. ..++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 45689999999999999999986 2 2489999999 999999999999999999999999986631 236899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
+|+.+. ........++.+.++|+|||+++.....+.
T Consensus 138 ~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 138 VAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred EEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 999753 112345667788899999999988765443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=9.6e-10 Score=97.64 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=63.9
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCcccEEE
Q 016320 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEKVDVII 149 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~D~Iv 149 (391)
..++||||||+|.+++.+++. ...+|+|+|++ .+++.|+++++.|++.+++.+++.+.....+ .++||+|+
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 468999999999999888876 23389999999 9999999999999999999999876544321 25799999
Q ss_pred Ecccccc
Q 016320 150 SEWMGYF 156 (391)
Q Consensus 150 s~~~~~~ 156 (391)
|++. |+
T Consensus 142 sNPP-Y~ 147 (250)
T d2h00a1 142 CNPP-FF 147 (250)
T ss_dssp ECCC-CC
T ss_pred ecCc-cc
Confidence 9984 44
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=1.3e-09 Score=94.99 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=86.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CCCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 145 (391)
.+.++|||||+++|.-++++|++ + ..+|+.+|.+ ...+.|++++++.|+.++|+++.++..+.- ..++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 35689999999999999999986 2 3489999999 999999999999999999999999987641 13589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|+|+.+. ........++.+.++|+|||+++.+..-+.
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~ 174 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWN 174 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 9999754 112345677788899999999988765443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=9.4e-09 Score=88.07 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~ 153 (391)
..++.+|+|+|||.|.-++.+|-.. ..+|+.+|.+ .-+...+..+...++.+ +++++.+++++....+||+|+|..+
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF 141 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhccccccceehhhhh
Confidence 3456899999999999999988764 3589999999 88899999999999976 9999999999866678999999665
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
. .+..++.-...+++++|.+++..+.
T Consensus 142 ~-------~~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 142 A-------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp S-------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred c-------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 3 3567888889999999998866553
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=1.3e-08 Score=86.21 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=83.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC
Q 016320 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 142 (391)
+...+...++..+||++||+|..+..+++. +..+|+|+|.+ .|++.|+++.+..+ +++.++++++.++. ..
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC
Confidence 444455678899999999999999988886 34589999999 99999999887654 55999999987752 22
Q ss_pred -CcccEEEEcccccc---cc----CcchHHHHHHHHhccccCCeEEEc
Q 016320 143 -EKVDVIISEWMGYF---LL----RESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 -~~~D~Ivs~~~~~~---l~----~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+++|.|+.++ |.. +. .-......+..+.++|+|||.++.
T Consensus 93 ~~~vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 93 IEKVDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp CSCEEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred CCCcceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 7899999764 211 11 112356778888999999999874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.73 E-value=6.3e-08 Score=84.67 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016320 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 143 (391)
..+.|.+.+...++++|||||||+|.++..+++.+. +|+|||++ .+++.++++.... ++++++++|+.+++++ .
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence 345566667677899999999999999999999876 89999999 8888888765432 3599999999998876 3
Q ss_pred cccEEEEccccccc
Q 016320 144 KVDVIISEWMGYFL 157 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l 157 (391)
....|++++ .|..
T Consensus 85 ~~~~vv~NL-PYnI 97 (235)
T d1qama_ 85 QSYKIFGNI-PYNI 97 (235)
T ss_dssp CCCEEEEEC-CGGG
T ss_pred ccceeeeee-hhhh
Confidence 344577766 4443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=2.5e-08 Score=93.18 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=76.8
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
.-.+.+.+.+.+.+...++.+|||+.||+|.+++.+|+.+. +|+|+|.+ .+++.|+++++.|++.+ ++++.++..+.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhh
Confidence 33455566666666666788999999999999999998755 89999999 99999999999999986 99999998774
Q ss_pred CC-----CCcccEEEEcccccc
Q 016320 140 VL-----PEKVDVIISEWMGYF 156 (391)
Q Consensus 140 ~~-----~~~~D~Ivs~~~~~~ 156 (391)
.. ..++|+||.++.-..
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTTC
T ss_pred hhhhhhhhccCceEEeCCCCcc
Confidence 21 257999999886544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=1.1e-08 Score=92.04 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=81.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccC-CCCCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDI-VLPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~-~~~~~~ 145 (391)
.+.++||.||+|.|..+..+.+.+..+|++||++ .+++.|++....+ .-..+++++.+|...+ .-.++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 4568999999999999998888877799999999 9999998765322 2346799999998764 223789
Q ss_pred cEEEEccccccccCc-chHHHHHHHHhccccCCeEEEccc
Q 016320 146 DVIISEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e-~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
|+|+++......... -.-..+++.+++.|+|+|+++...
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 999997754321111 112567899999999999988553
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.64 E-value=1.4e-07 Score=80.01 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=75.4
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccH----HHHHHHHcCC-----CeEEEEech-HHHHHHHHHH---------
Q 016320 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI----LAIWSAQAGA-----RKVYAVEAT-KMSDHARTLV--------- 120 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~----ls~~~a~~g~-----~~V~avD~s-~~~~~a~~~~--------- 120 (391)
....+.+.+.+.. ..+..+||++|||+|- +++.+.+... -+|+|+|++ .+++.|++-.
T Consensus 9 ~~~f~~L~~~~~~---~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~ 85 (193)
T d1af7a2 9 AHHFPILAEHARR---RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTL 85 (193)
T ss_dssp TTHHHHHHHHHHH---SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTS
T ss_pred cHHHHHHHHHHhc---cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhh
Confidence 3333444444433 2345699999999996 5555555411 169999999 8888886321
Q ss_pred -----HH----cCC------------CCcEEEEEcccccCCC--CCcccEEEE-ccccccccCcchHHHHHHHHhccccC
Q 016320 121 -----KA----NNL------------QDVVEVIEGSVEDIVL--PEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKP 176 (391)
Q Consensus 121 -----~~----~~~------------~~~v~~~~~d~~~~~~--~~~~D~Ivs-~~~~~~l~~e~~~~~~l~~~~~~Lkp 176 (391)
.. .+. ...+.+...+...... .++||+|+| +.+.|+ .......+++.+.+.|+|
T Consensus 86 ~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf--~~~~~~~vl~~l~~~L~p 163 (193)
T d1af7a2 86 SPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKP 163 (193)
T ss_dssp CHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEE
T ss_pred hHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc--CHHHHHHHHHHHHHHhCC
Confidence 11 010 0124455555444322 278999999 444443 233567899999999999
Q ss_pred CeEEEcccc
Q 016320 177 TGVMYPSHA 185 (391)
Q Consensus 177 gG~~i~~~~ 185 (391)
||++++...
T Consensus 164 GG~L~lG~s 172 (193)
T d1af7a2 164 DGLLFAGHS 172 (193)
T ss_dssp EEEEEECTT
T ss_pred CcEEEEecC
Confidence 999886644
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=3.7e-08 Score=89.83 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--C--CCCcEEEEEcccccC--CCCCcccEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--N--LQDVVEVIEGSVEDI--VLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~--~~~~~~D~I 148 (391)
...++||.||.|.|..+..+++. +..+|++||++ .+++.|++..... + -.++++++.+|..++ ..+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 34589999999999999988887 45689999999 8999999876431 1 135799999999885 234789999
Q ss_pred EEccccccccCc----chHHHHHHHHhccccCCeEEEccccee
Q 016320 149 ISEWMGYFLLRE----SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 149 vs~~~~~~l~~e----~~~~~~l~~~~~~LkpgG~~i~~~~~~ 187 (391)
+++......... -.-..+++.+++.|+|||+++......
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~ 198 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence 997643322111 112567889999999999988764433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=6.4e-08 Score=87.23 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||-||.|.|..+..+++. +..+|++||++ .+++.|++....+. + .++++++.+|...+- .+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4589999999999999999887 45689999999 89999998765432 2 357999999988752 3478999999
Q ss_pred ccccccc-c-CcchHHHHHHHHhccccCCeEEEcccc
Q 016320 151 EWMGYFL-L-RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 ~~~~~~l-~-~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+...... . ..-.-..+++.+++.|+|||+++....
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 7654321 1 111135788899999999999886543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=1.9e-07 Score=82.03 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=76.7
Q ss_pred HHHhcCCCCC-CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQ-GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~-~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.+...... ..+|||||||+|.++..++++. .-+++..|....+ +..+..++|+++.+|+.+. .| ..|
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi-------~~~~~~~ri~~~~gd~~~~-~p-~~D 141 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI-------ENAPPLSGIEHVGGDMFAS-VP-QGD 141 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH-------TTCCCCTTEEEEECCTTTC-CC-CEE
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhh-------hccCCCCCeEEecCCcccc-cc-cce
Confidence 4444454333 4899999999999999998873 3378888987443 3344557799999998763 34 459
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
++++..+.+....+ ....+|+.+++.|+|||.+++...
T Consensus 142 ~~~l~~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 142 AMILKAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EEEEESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99875444443333 356789999999999999887654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=1.6e-07 Score=81.81 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=84.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEEc
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~D~Ivs~ 151 (391)
...+|+|||+|.|.-++.+|-. ...+|+.+|.+ .-+...+..++..++++ +.+++..++++.. .++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEEh
Confidence 4579999999999999988875 55689999999 88888899999999976 8999999887632 3689999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 152 ~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.+. .+..++.-...+++++|.+++..+..+
T Consensus 149 Ava-------~l~~ll~~~~~~l~~~g~~i~~KG~~~ 178 (239)
T d1xdza_ 149 AVA-------RLSVLSELCLPLVKKNGLFVALKAASA 178 (239)
T ss_dssp CCS-------CHHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred hhh-------CHHHHHHHHhhhcccCCEEEEECCCCh
Confidence 653 467788889999999999987655443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.5e-07 Score=82.56 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=71.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 145 (391)
.+.|.+.....++..|||||+|+|.++..+++.++ +|++||++ .+++..++........++++++.+|+....++ ..
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-~~ 87 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FF 87 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CC
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-hh
Confidence 34455556666789999999999999999999976 89999999 89999998887766666799999999988765 45
Q ss_pred cEEEEcccccc
Q 016320 146 DVIISEWMGYF 156 (391)
Q Consensus 146 D~Ivs~~~~~~ 156 (391)
+.||+++ .|.
T Consensus 88 ~~vV~NL-PY~ 97 (278)
T d1zq9a1 88 DTCVANL-PYQ 97 (278)
T ss_dssp SEEEEEC-CGG
T ss_pred hhhhcch-HHH
Confidence 6788876 343
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.7e-07 Score=84.11 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=80.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc---CCCCcEEEEEcccccCC--CCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN---NLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~--~~~~~D~Iv 149 (391)
...++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++....+ --..+++++.+|...+- .+++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35589999999999999999987 56799999999 9999999876432 12457999999987752 347899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
++.......... .-..+++.+++.|+|||+++...
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 986543221111 12356888999999999988653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.48 E-value=1.7e-07 Score=86.17 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016320 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 141 (391)
.+.......++.+|||.+||+|.+.+.+.+. + ..+++|+|++ .++..|+.++...+.. ..+.++|......
T Consensus 108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~~ 185 (328)
T d2f8la1 108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLL 185 (328)
T ss_dssp HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCC
T ss_pred HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhccccccccc
Confidence 3334344456689999999999998887653 1 2269999999 8999999888877765 6788888766555
Q ss_pred CCcccEEEEccccccccCc----------------chHHHHHHHHhccccCCeEEEc
Q 016320 142 PEKVDVIISEWMGYFLLRE----------------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e----------------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
..+||+|++++. +..... ..-..++....++|+|||++++
T Consensus 186 ~~~fD~vi~NPP-y~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~ 241 (328)
T d2f8la1 186 VDPVDVVISDLP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 241 (328)
T ss_dssp CCCEEEEEEECC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccCCC-CCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence 589999999874 221111 1122356777899999998653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.48 E-value=3.8e-07 Score=81.41 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC--CCCCcccEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI--VLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~D~Iv 149 (391)
.+.++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++....+ .+ ..+++++.+|.... ..+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 34589999999999999999987 66799999999 9999999876432 12 35799999998774 2347899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+.......... .-..+++.+++.|+|+|+++....
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 976433222111 135678889999999999886543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.47 E-value=4.3e-07 Score=81.67 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc---CCCCcEEEEEcccccCC--CC-CcccEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN---NLQDVVEVIEGSVEDIV--LP-EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~--~~-~~~D~Iv 149 (391)
+.++||-||-|.|..+..+.+. +..+|+.||++ .+++.|++....+ .-..+++++.+|....- .+ ++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4579999999999999999987 55689999999 9999999876432 12457999999987642 33 5899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016320 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 s~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
.+.......... .-..+++.+++.|+|||+++.....
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 976543221111 1356788999999999999876543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.46 E-value=1.5e-08 Score=89.28 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=70.2
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+|.|..-. +.|.+.+...++..|||||||+|.++..+++.+. +|+|||++ .+++.++++... ..+++++++
T Consensus 11 FL~d~~ii----~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~ 82 (245)
T d1yuba_ 11 FLTSEKVL----NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL---NTRVTLIHQ 82 (245)
T ss_dssp BCCCTTTH----HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT---CSEEEECCS
T ss_pred ccCCHHHH----HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh---ccchhhhhh
Confidence 45555433 3455656667789999999999999999999876 89999999 888777654432 245999999
Q ss_pred ccccCCCC-CcccEEEEccccccc
Q 016320 135 SVEDIVLP-EKVDVIISEWMGYFL 157 (391)
Q Consensus 135 d~~~~~~~-~~~D~Ivs~~~~~~l 157 (391)
|+.+++++ ...+.|++++ .|..
T Consensus 83 D~l~~~~~~~~~~~vv~NL-PY~I 105 (245)
T d1yuba_ 83 DILQFQFPNKQRYKIVGNI-PYHL 105 (245)
T ss_dssp CCTTTTCCCSSEEEEEEEC-CSSS
T ss_pred hhhccccccceeeeEeeee-ehhh
Confidence 99999887 5666778776 4443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.44 E-value=1.5e-07 Score=85.16 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCC---CCcEEEEEcccccCC--CCCcccEEEE
Q 016320 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNL---QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++....+.- ..+++++.+|...+- ..++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4579999999999999999987 45689999999 999999987644321 257999999988752 3478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016320 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 ~~~~~~l~~e~-~~~~~l~~~~~~LkpgG~~i~~~~~ 186 (391)
+.......... .-..+++.+++.|+|||+++.....
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 76533221111 1356788899999999999876443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.36 E-value=3.7e-07 Score=85.06 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCC--------------cEEEEEcccccCC-
Q 016320 78 QGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQD--------------VVEVIEGSVEDIV- 140 (391)
Q Consensus 78 ~~~~VLDlGcG~G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~~~- 140 (391)
++.+|||..||+|..++..|+ .|+.+|+++|+| ..++.++++++.|+..+ .+.+.+.|...+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 678999999999999996555 688899999999 99999999999998754 3566777765442
Q ss_pred -CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 -LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+.||+|..++++. ...+++...+.++.||.+.+.
T Consensus 125 ~~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEEEE
Confidence 236799999987543 245777788889999988765
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=1.3e-06 Score=75.22 Aligned_cols=107 Identities=21% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 143 (391)
.+.+...+...++.+|||.|||+|.+...+.+. ...+++|+|++ ..+. +.....++++|........
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGCCCSS
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhcccccc
Confidence 344555566677899999999999988777654 34479999999 4332 2233688899988776668
Q ss_pred cccEEEEccccccccC--------------------------cchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLR--------------------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~--------------------------e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+||+|++++....... ......++....++|++||++.+.
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 9999999864211100 001223456667889999987643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.22 E-value=1.9e-06 Score=75.52 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016320 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 79 ~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
..+|||||||+|.++..++++. .-+++..|..+.++ ..+..++|+++.+|+.+- . ..+|+++...+.+.+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~-~-p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTS-I-PNADAVLLKYILHNW 151 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTC-C-CCCSEEEEESCGGGS
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccC-C-CCCcEEEEEeecccC
Confidence 3789999999999999988873 33899999875443 334567899999999763 2 368999875444443
Q ss_pred cCcchHHHHHHHHhccccCC---eEEEccc
Q 016320 158 LRESMFDSVICARDRWLKPT---GVMYPSH 184 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~Lkpg---G~~i~~~ 184 (391)
..+ ....+|+.+++.|+|| |++++..
T Consensus 152 ~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 152 TDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 333 3567899999999998 6666543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.19 E-value=4.5e-06 Score=73.04 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHhcCCCCC-CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016320 69 SIFQNKHHFQ-GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~-~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 146 (391)
.+.......+ ..+|||||||+|.+++.++++. .-+++..|....++ .....++++++.+|+.+. .| ..|
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~r~~~~~~d~~~~-~P-~ad 141 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE-------DAPSYPGVEHVGGDMFVS-IP-KAD 141 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT-------TCCCCTTEEEEECCTTTC-CC-CCS
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh-------hcccCCceEEeccccccc-CC-Ccc
Confidence 3444444334 4789999999999999999873 33899999874432 233446799999999763 34 345
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
+++...+.+.... .....+++.+++.|+|||.+++...
T Consensus 142 ~~~l~~vlh~~~d-~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 142 AVFMKWICHDWSD-EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CEECSSSSTTSCH-HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred eEEEEEEeecCCH-HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 5554322232222 3466789999999999998886654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=5.1e-06 Score=69.14 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---------CCCcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV---------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~~ 145 (391)
.++.+||||||+.|.++..+++. ...+|+++|..+| ..+. .+.++++|+.+.. ...++
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPIV-GVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCCT-TEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------cccC-CceEeecccccchhhhhhhhhccCcce
Confidence 46789999999999999998875 3458999998743 1233 3899999987642 23689
Q ss_pred cEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016320 146 DVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e--------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
|+|+|+......... ......+..+.++|++||.++.
T Consensus 90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 999998653332211 1123445556789999999884
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.15 E-value=4.7e-06 Score=75.66 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=85.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVII 149 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~Iv 149 (391)
+...+|.+|||+.||.|.=+..++.. +...++|+|.+ .-+..+++++++.+..+ +.+...|...+.. ...||.|+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccccccccccccccEEE
Confidence 34578899999999999987777765 33479999999 88889999999999876 7778788776643 37899999
Q ss_pred Ecccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.+....... ... ....++....++|||||+++-+.+++.
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 976433211 001 123556777889999999998887754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-05 Score=71.87 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=81.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccE
Q 016320 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~ls~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~ 147 (391)
...++.+|||++||.|.-+..+|.. +..+|+|+|++ .-+..+++++++.|+.+ +.+...|...+... ++||.
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeE
Confidence 4567899999999999988777764 44589999999 88899999999999976 89999998876432 67999
Q ss_pred EEEcccccccc--------------Ccc---hH----HHHHHHHhccccCCeEEEcccceeE
Q 016320 148 IISEWMGYFLL--------------RES---MF----DSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivs~~~~~~l~--------------~e~---~~----~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
|+.+....... ... .+ ..++.... .|+|||.++-+.+++.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 99976433211 000 01 22344444 3699999887777654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=5.5e-06 Score=74.17 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEE
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVII 149 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~Iv 149 (391)
+...++.+|||+++|.|.=+..++..+ ..+|+|+|.+ .-+...++++++.|+.+ +.+...|.... ..++.||.|+
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEE
Confidence 345788999999999999888887764 3479999999 88889999999999875 44444443322 2346899999
Q ss_pred Ecccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016320 150 SEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 s~~~~~~l~------------~e~-------~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
.+....... .+. ....++....++|||||+++-+.+++.
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 976433211 011 134667778899999999998877754
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=7.2e-07 Score=78.50 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=63.9
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016320 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 134 (391)
+|.|..-.+ .|.+.+...+++.|||||||+|.++..+++.+. +|+|||++ .+++..++.... .++++++++
T Consensus 3 FL~d~~~~~----~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~ 74 (252)
T d1qyra_ 3 FLNDQFVID----SIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFL---GPKLTIYQQ 74 (252)
T ss_dssp EECCHHHHH----HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTT---GGGEEEECS
T ss_pred ccCCHHHHH----HHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhh---ccchhHHhh
Confidence 355554333 344444556788999999999999999998875 79999999 888877764322 245999999
Q ss_pred ccccCCCCC------cccEEEEcc
Q 016320 135 SVEDIVLPE------KVDVIISEW 152 (391)
Q Consensus 135 d~~~~~~~~------~~D~Ivs~~ 152 (391)
|+.++.+++ +.-.|++++
T Consensus 75 D~l~~~~~~~~~~~~~~~~vvgNl 98 (252)
T d1qyra_ 75 DAMTFNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp CGGGCCHHHHHHHHTSCEEEEEEC
T ss_pred hhhhhcccccccccCCCeEEEecc
Confidence 999875431 223566665
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.97 E-value=1.3e-05 Score=66.53 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=77.6
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC-C
Q 016320 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP-E 143 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-~ 143 (391)
...+...++..++|..+|.|..+..+.+.+. +|+|+|.+ .++..|++. ..+++.+++++..++. .. +
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCC
Confidence 3444567889999999999999999988865 89999999 888777653 2345999999887753 22 6
Q ss_pred cccEEEEcccccccc---C---c-chHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLL---R---E-SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~---~---e-~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++|.|+.++ +.... . + ..+...|+....+|++||.++..
T Consensus 85 ~vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 85 RVDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp CEEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 899999875 22111 0 0 12445677778899999987743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.80 E-value=2e-05 Score=68.04 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=75.0
Q ss_pred hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCCc
Q 016320 55 EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQDV 128 (391)
Q Consensus 55 ~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~ 128 (391)
.+++.+.....|.+.|.+. ++++|||||++.|.-+++++.. + ..+|+++|++ .....+. ...++
T Consensus 61 p~~k~p~d~~~~~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~ 130 (232)
T d2bm8a1 61 RMLKDPDTQAVYHDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMEN 130 (232)
T ss_dssp ECCSCHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTT
T ss_pred ecccCHHHHHHHHHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccc
Confidence 4566676677776666653 5689999999999877666542 2 3489999997 4322211 11245
Q ss_pred EEEEEcccccCCC-----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 129 VEVIEGSVEDIVL-----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 v~~~~~d~~~~~~-----~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
|+++++|..+... ...+|+|+.+.- +. .+..+..+ ...++|++||++|+.+.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~--~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA--NTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEESS-CS--SHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcCC-cc--hHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 9999999866432 145788886542 21 22223332 24579999999998765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.78 E-value=2.9e-05 Score=73.46 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC----------CeEEEEech-HHHHHHHHHHHHcCCCC-cEE
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA----------RKVYAVEAT-KMSDHARTLVKANNLQD-VVE 130 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g~----------~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~ 130 (391)
.+.+...+...++.+|+|-.||+|.+...+.+. +. ..++|+|++ .+...|+.+....+... ...
T Consensus 151 v~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~ 230 (425)
T d2okca1 151 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 230 (425)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred hHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence 344445555556789999999999998877664 11 149999999 88899988887777643 356
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCc---------------chHHHHHHHHhccccCCeEEEc
Q 016320 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRE---------------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 131 ~~~~d~~~~~~~~~~D~Ivs~~~~~~l~~e---------------~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
+..+|........+||+|++++. +..... ..-..++..+.++|++||.+.+
T Consensus 231 i~~~d~l~~~~~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i 296 (425)
T d2okca1 231 IVCEDSLEKEPSTLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 296 (425)
T ss_dssp EEECCTTTSCCSSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred eecCchhhhhcccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence 77888877655589999999874 221110 1123467777889999998653
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.65 E-value=4.3e-05 Score=66.32 Aligned_cols=74 Identities=22% Similarity=0.202 Sum_probs=56.1
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH---HHHcC-----CCCcEEEEEcccccCC--CCCcccEE
Q 016320 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL---VKANN-----LQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~---~~~~~-----~~~~v~~~~~d~~~~~--~~~~~D~I 148 (391)
.+|||+-||.|..++.+|..|+ +|++||.+ .+....+.. +..+. +..+++++++|..++- ...+||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999998 69999999 554444433 33321 1236999999987753 23679999
Q ss_pred EEcccc
Q 016320 149 ISEWMG 154 (391)
Q Consensus 149 vs~~~~ 154 (391)
..++|-
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.57 E-value=2.8e-05 Score=66.88 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~ 151 (391)
....++..|+|||||.|.++..++... ...|.|+++. ...+. -.....++. +.+++...+......++++|+|+|+
T Consensus 62 ~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~~~~~D~vlcD 139 (257)
T d2p41a1 62 NLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIPPERCDTLLCD 139 (257)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred cCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcCCCcCCEEEee
Confidence 334566789999999999999999773 2368888875 31100 000111111 2355554443322335899999998
Q ss_pred cccccccCcc---hHHHHHHHHhccccCCeEEEc
Q 016320 152 WMGYFLLRES---MFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~l~~e~---~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.-......+- -.-.+++.+.++|+|||.|+.
T Consensus 140 m~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 140 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 6332211111 122456677899999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=0.00015 Score=59.93 Aligned_cols=99 Identities=22% Similarity=0.303 Sum_probs=63.2
Q ss_pred HHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc------
Q 016320 69 SIFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV------ 136 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~------ 136 (391)
++.+.....+|.+||-+|+|. |.++..++++ |+++|+++|.+ +.++.|++ .|.. .++.- +.
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKA 91 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccce---EEEeccccchHHHHHH
Confidence 444545556889999999985 7888787776 88789999999 76776654 3432 22221 21
Q ss_pred -ccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 137 -EDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 -~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++..+..+|+|+--. +. . ..++...++|+++|+++..
T Consensus 92 i~~~~~~~g~Dvvid~v-G~----~----~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 92 IMDITHGRGADFILEAT-GD----S----RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHTTTSCEEEEEECS-SC----T----THHHHHHHHEEEEEEEEEC
T ss_pred HHHhhCCCCceEEeecC-Cc----h----hHHHHHHHHhcCCCEEEEE
Confidence 1112235699988421 11 1 2345556789999998644
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.00062 Score=61.49 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=56.9
Q ss_pred hcCChHhHHHHHHHHH--hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEE
Q 016320 56 MLSDRVRMDAYFNSIF--QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 56 ~l~d~~r~~~~~~~i~--~~~~~~~~~~VLDlGcG~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~ 131 (391)
+|.|..-.+...+.+. ......++..|||||+|.|.++..+.+. ++++|+++|++ .+.+..++... .+++++
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~i 94 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQI 94 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEE
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEE
Confidence 3666654444444432 1122235689999999999999999887 56789999999 88887776543 245899
Q ss_pred EEcccccC
Q 016320 132 IEGSVEDI 139 (391)
Q Consensus 132 ~~~d~~~~ 139 (391)
+++|+..+
T Consensus 95 i~~D~l~~ 102 (322)
T d1i4wa_ 95 LKRDPYDW 102 (322)
T ss_dssp ECSCTTCH
T ss_pred EeCchhhc
Confidence 99998654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.97 E-value=0.00013 Score=61.09 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc----ccCCCCC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----EDIVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~~~~~~ 143 (391)
....++.+||.+|||. |.++..+++. |+.+|+++|.+ ..++.|++. |.. .++.. |. .++.-+.
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHhCCC
Confidence 4567899999999998 7777777765 88899999999 777766653 421 22211 11 1111235
Q ss_pred cccEEEEccccc-------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGY-------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~-------~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+++- ..+. ...........++...+.++|+|.++..
T Consensus 94 g~D~vid-~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 94 EVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CcEEEEE-CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 6899884 2221 0001111245678888899999998754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00051 Score=66.38 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=73.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC---------------CeEEEEech-HHHHHHHHHHHHcCCC
Q 016320 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA---------------RKVYAVEAT-KMSDHARTLVKANNLQ 126 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~----g~---------------~~V~avD~s-~~~~~a~~~~~~~~~~ 126 (391)
.+.+.+.+...++.+|+|-.||+|.+...+.+. .. ..++|+|++ .+...|+.++.-.+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 344555555566789999999999998776653 11 158999999 8888888887766654
Q ss_pred Cc----EEEEEcccccC--CCCCcccEEEEccccccccCc------------chHHHHHHHHhccccCCeEEEcc
Q 016320 127 DV----VEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRE------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 ~~----v~~~~~d~~~~--~~~~~~D~Ivs~~~~~~l~~e------------~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.. -.+..++.... ....+||+|++++. +..... ..-..++..+.+.|++||++.+.
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 21 12333333221 11268999999873 221110 11123667778899999986543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.96 E-value=9.9e-05 Score=60.70 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=61.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCC
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~~~~~ 143 (391)
....++.+||-+|||. |.++..+++. |+++|+++|.+ +-++.|++ .|.. .++.-.-.+ ..-..
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHHHhhcc
Confidence 4567889999999997 8888888887 78789999999 66666654 3332 233221111 11124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.+|+|+-.. +. ...++...++|+|+|.++..
T Consensus 96 G~D~vid~~-g~--------~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAG-GG--------SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECS-SC--------TTHHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEcc-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 599987521 11 12345555788999998764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.94 E-value=0.002 Score=52.42 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=63.5
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------C
Q 016320 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------V 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~ 140 (391)
+.+.....++.+||-+|||. |.++..+++. |+++|+++|.+ .-++.|++. |.. .++.-+-.++ .
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHH
Confidence 34445567889999999986 6667777765 88888999998 666666653 432 3443322221 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++.+|+|+-.. + ....++...++++|+|.++..
T Consensus 93 t~gg~D~vid~~-G--------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 93 TDGGVNFALEST-G--------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TTSCEEEEEECS-C--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEEcC-C--------cHHHHHHHHhcccCceEEEEE
Confidence 235799988421 1 123456667889999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.0011 Score=53.71 Aligned_cols=94 Identities=24% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---------CCC
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------VLP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~ 142 (391)
...++.+||-+|||. |.++..+++. |+.+|+++|.+ .-++.|++ .|.. .++..+-.+. ..+
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---ccccccccccccccccccccCC
Confidence 456789999999987 6777777776 88889999999 66666654 3433 2222111111 123
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
..+|+|+--. + -+..++...++++++|+++...
T Consensus 96 ~g~Dvvid~~-G--------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 96 CKPEVTIECT-G--------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp SCCSEEEECS-C--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEecc-C--------CchhHHHHHHHhcCCCEEEEEe
Confidence 5789988521 1 1234666678899999987653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.0011 Score=53.64 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC--CCCCcccEE
Q 016320 75 HHFQGKTVLDVGTG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI--VLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcG-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~~D~I 148 (391)
...++.+||.+|+| .|.++..+++. |+ +|+++|.+ +.++.|++. |.. .++.. +-.+. ...+.+|+|
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccceE
Confidence 46788999999999 47888887776 87 79999999 777776653 432 22221 11111 123679988
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.- .+.. .. ..+....+.|+|+|+++..
T Consensus 96 i~~-~~~~--~~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 96 VVC-ASSL--TD----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEC-CSCS--TT----CCTTTGGGGEEEEEEEEEC
T ss_pred EEE-ecCC--cc----chHHHHHHHhhccceEEEe
Confidence 752 1111 11 0133456789999998754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.61 E-value=0.0029 Score=51.46 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=59.8
Q ss_pred HhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------
Q 016320 71 FQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------- 139 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------- 139 (391)
.+.....++.+||-+|||. |.+++.++++ |+++|+++|.+ +-++.|++ .|.. .++.-.-.+.
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~---~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc---EEEcCCCchhHHHHHHHH
Confidence 3444567899999999996 6667777765 88899999999 77777664 4433 2332111111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..+|+++-.. + ....+...+..+++++|.++..
T Consensus 93 ~~~~G~d~vid~~-g-------~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 93 KTNGGVDYAVECA-G-------RIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HTTSCBSEEEECS-C-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hcCCCCcEEEEcC-C-------CchHHHHHHHHHHHhcCceEEE
Confidence 1235689888522 1 1233344444555666877643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.58 E-value=0.0043 Score=50.43 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=63.0
Q ss_pred HhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C-------
Q 016320 71 FQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I------- 139 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~------- 139 (391)
.+.....++.+||-+|||. |++++.++++ |+++|+++|.+ +-++.|++ .|.. .++.....+ .
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhhhhHhh
Confidence 3444567889999999998 8888888887 88899999999 65555554 4433 233211111 0
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016320 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~Lkpg-G~~i~~ 183 (391)
..+..+|+++--. + .+..++...+.|+++ |.++..
T Consensus 94 ~~~~G~d~vie~~-G--------~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 94 LTAGGVDYSLDCA-G--------TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHTSCBSEEEESS-C--------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhcCCCcEEEEec-c--------cchHHHHHHHHhhcCCeEEEec
Confidence 1236789997411 1 123466666788886 888754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.55 E-value=0.0073 Score=49.07 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=61.7
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC------
Q 016320 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~------ 139 (391)
+.+.....++.+||-+|||. |+++..+++. |+++|+++|.+ +-++.|++.-.. .++.- +....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------EEECccccchHHHHHHH
Confidence 44444567889999999996 6667776665 87899999999 888887765332 22221 11110
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..+|+++-.. .....+...+..+++++|.++..
T Consensus 94 ~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEEEC
T ss_pred HhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEEEE
Confidence 1235789887522 12234455556666776887644
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.53 E-value=0.00096 Score=53.71 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=63.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016320 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 153 (391)
++.+|+-||+|. |..+...|+. |+ +|+++|.+ +.++..+.....+ ++....+-..+... ...|+||+-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-----VELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhccc-----ceeehhhhhhHHHhhccCcEEEEeee
Confidence 568999999997 7777776665 77 79999999 7777666554332 56665554443211 57999998443
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
......+.-+-+++.+.+|||.+++-.
T Consensus 105 ---ipG~~aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 105 ---VPGRRAPILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp ---CTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred ---cCCcccCeeecHHHHhhcCCCcEEEEe
Confidence 222222222344556778999987743
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.42 E-value=0.0085 Score=48.30 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCCCccc
Q 016320 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLPEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~D 146 (391)
..++.+||-+|+|. |.++..++++ |+.+|+++|.+ +-++.+++ .+.. .++..+-... ..+..+|
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhhCCCCce
Confidence 46789999999987 6666666664 88899999998 65665554 3332 3343221111 1235699
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+|+-.. + -...++...+.|+++|+++..
T Consensus 103 ~vid~~-g--------~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 103 VAMDFV-G--------SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEESS-C--------CHHHHHHGGGGEEEEEEEEEC
T ss_pred EEEEec-C--------cchHHHHHHHHHhCCCEEEEE
Confidence 888522 1 123467777899999998864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0042 Score=50.35 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=60.8
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCC
Q 016320 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVL 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~ 141 (391)
+.+.....++.+||-.|+ | .|.+++.+++. |+ +|++++.+ +..+.++ +.|....+..-..|..+ ...
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAHEVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCSEEEETTSTTHHHHHHHHHC
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccc----ccCcccccccccccHHHHhhhhhc
Confidence 444445678899999996 3 57888888876 77 79998877 5555544 45553211111112111 112
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.+|+|+... + ...++...+.|+|+|+++..
T Consensus 95 ~~g~d~v~d~~-g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 95 EKGIDIIIEML-A---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TTCEEEEEESC-H---------HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCceEEeecc-c---------HHHHHHHHhccCCCCEEEEE
Confidence 36799998622 1 12355666789999998854
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.18 E-value=0.0091 Score=47.92 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----------CC
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----------VL 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~ 141 (391)
...++.+||-+|||. |.++..+++. |+ +|+++|.+ .-++.|++. +.. ..+...+..+. ..
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhccc
Confidence 456789999999995 7788777776 76 89999999 766666653 322 22322111110 12
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~ 184 (391)
+..+|+|+-.. + . +..+....++|+++|+++..-
T Consensus 96 g~g~D~vid~~-g----~----~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 96 GDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceeeecC-C----C----hHHHHHHHHHHhcCCceEEEe
Confidence 35689887421 1 1 234555667899999988543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.02 E-value=0.01 Score=50.84 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=72.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC-----------------------------------------CeEEEEech-HHH
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGA-----------------------------------------RKVYAVEAT-KMS 113 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~-----------------------------------------~~V~avD~s-~~~ 113 (391)
...+..++|--||+|.+.+.+|-... ..++|.|++ .++
T Consensus 48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai 127 (249)
T d1o9ga_ 48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 127 (249)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence 34456799999999999887764210 035688888 788
Q ss_pred HHH---HHHHHHcCCCCcEEEEEcccccCC------CCCcccEEEEccc-cccccCc-----chHHHHHHHHhccccCCe
Q 016320 114 DHA---RTLVKANNLQDVVEVIEGSVEDIV------LPEKVDVIISEWM-GYFLLRE-----SMFDSVICARDRWLKPTG 178 (391)
Q Consensus 114 ~~a---~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~D~Ivs~~~-~~~l~~e-----~~~~~~l~~~~~~LkpgG 178 (391)
+.| +++++..|+.+.|.+.+.|+.+.. .+...++||||+. +.-+..+ ..+..+...+.+.|....
T Consensus 128 ~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 128 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 877 568889999999999999986543 3467899999873 2223212 124555566667675555
Q ss_pred EEEc
Q 016320 179 VMYP 182 (391)
Q Consensus 179 ~~i~ 182 (391)
.+++
T Consensus 208 ~~~i 211 (249)
T d1o9ga_ 208 VIAV 211 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.014 Score=46.73 Aligned_cols=93 Identities=26% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEE
Q 016320 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~I 148 (391)
....++++||-+|||. |.++..+++. |+ +++++|.+ +-.+.+++ .|.. .++...-.+. ...+.+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHhcCCCcee
Confidence 4567889999999986 7788888876 77 57788888 65555554 3432 2332221111 122679998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+-.. + ... .+....+.|+++|+++..
T Consensus 98 id~~-g----~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNTV-A----APH----NLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EECC-S----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred eeee-e----cch----hHHHHHHHHhcCCEEEEe
Confidence 8522 1 111 134455789999998865
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.68 E-value=0.0022 Score=51.85 Aligned_cols=94 Identities=22% Similarity=0.253 Sum_probs=60.7
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CCC
Q 016320 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~ 142 (391)
....++.+||-+|| | .|.++..+++. |..+|+++|.+ +-++.+++ .|.. .++..+-.+. ..+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhhc
Confidence 44678899999997 4 46667666664 87799999999 66666654 3432 2333222221 223
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+|+|+... + -...++...++|+|+|+++..
T Consensus 96 ~~~d~vid~~-g--------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLN-N--------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESC-C--------CHHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhccc-c--------cchHHHhhhhhcccCCEEEEe
Confidence 6799888522 1 123456667899999998755
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.40 E-value=0.018 Score=45.86 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------CCCcc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------LPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~ 145 (391)
...++.+||-+|+|. |.++..+++. |+ +|+++|.+ .-++.+++ .|.. .++..+-.+.. ..+..
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGAH 95 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCCc
Confidence 456889999999986 7788777776 65 89999999 66665553 4432 33332221110 11233
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.|++.. -...+....++|+++|+++..
T Consensus 96 ~~i~~~~----------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 96 GVLVTAV----------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEECCS----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred ccccccc----------cchHHHHHHHHhcCCcEEEEE
Confidence 4444311 123455667899999998764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.97 E-value=0.018 Score=50.89 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=50.3
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016320 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
+|||+-||.|.+++-+.++|.+.|.++|++ ...+..+.+. + -.++.+|+.++... .++|+++.-+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence 699999999999999988999888899999 5555444432 2 36678999988543 5799999743
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.94 E-value=0.019 Score=51.04 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=52.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~Ivs~~ 152 (391)
..+.+||||-||.|.+++.+.++|...|.++|++ .+++..+.+.. + ..++|+.++... ..+|+|+.-+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence 3568999999999999999999999888899999 66666666542 1 125888887543 5799999743
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.045 Score=47.02 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=59.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C--
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 141 (391)
.+++++||--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.+.++.++++|+.+.+ .
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999986 4667788899 79999999 777777777777776667899999987742 0
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 16799999754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.63 E-value=0.036 Score=47.06 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
..+|..|||--||+|..+.++.+.|- +.+|+|++ +.++.|++++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 46889999999999999999998886 79999999 89999998875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.011 Score=47.82 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016320 70 IFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~--G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------ 139 (391)
+.+.....++++||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.+++ .|.. .++.-+-.++
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKE 91 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHHH
Confidence 44444557789999997664 6677777776 77 79999999 66666654 3433 2332221221
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
.-+..+|+|+... + .+ .+......|+++|.++.
T Consensus 92 ~t~g~g~d~v~d~~-g----~~-----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 92 ITGGKKVRVVYDSV-G----RD-----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HTTTCCEEEEEECS-C----GG-----GHHHHHHTEEEEEEEEE
T ss_pred HhCCCCeEEEEeCc-c----HH-----HHHHHHHHHhcCCeeee
Confidence 2236789887522 1 11 23445678999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.13 E-value=0.029 Score=49.31 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
..+|..|||.-||+|..+.++.+.|- +.+|+|++ +.++.|++++..+
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 46889999999999999999999886 79999999 9999998877554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.08 E-value=0.024 Score=45.93 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016320 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 78 ~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
++.+||-||+|. |..+...|.. |+ +|+++|.+ ..++..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 567999999997 6667666654 88 89999999 766665543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.85 E-value=0.026 Score=44.86 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCccc
Q 016320 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~D 146 (391)
...++.+||-.|+|+ |.++..+++. |+ +|++++.+ +-++.+++ .|.. .++...-.+.. ....+|
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCc
Confidence 356889999999997 7777777776 56 79999998 65555543 4543 22221111110 012344
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++.+.. . ...+....+.|+|+|.++..
T Consensus 96 ~~v~~~~-----~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVTAV-----S----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEeecC-----C----HHHHHHHHHHhccCCceEec
Confidence 4443221 1 23456666789999998865
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.69 E-value=0.072 Score=45.70 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016320 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
..+|..|||--||+|..++++.+.|- +.+|+|++ ...+.|++++...
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999876 89999999 8999999988764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.68 E-value=0.18 Score=42.99 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 140 (391)
++|++||-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+.....+.. +.++..|+.+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~--~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLN--VEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC--ceEEEeecCCHHHHHHHHHHHHHH
Confidence 579999999999875 5667788898 79999999 7777777777776643 888889987642
Q ss_pred CCCcccEEEEc
Q 016320 141 LPEKVDVIISE 151 (391)
Q Consensus 141 ~~~~~D~Ivs~ 151 (391)
+.+..|+++++
T Consensus 81 ~~g~idilinn 91 (258)
T d1ae1a_ 81 FDGKLNILVNN 91 (258)
T ss_dssp TTSCCCEEEEC
T ss_pred hCCCcEEEecc
Confidence 23568888874
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.68 E-value=0.0075 Score=49.00 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016320 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------ 139 (391)
+.+.....++++||-.|. | .|.+++.+|+. |+ +|+++..+ +-.+.++ +.|.. .++..+-.++
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEILE 88 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc---ccccCCccCHHHHHHH
Confidence 444555677899999874 3 46777777776 77 67777766 5444444 45543 2232221121
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
..+..+|+|+.-. + . ..++...+.|+++|+++..
T Consensus 89 ~t~~~g~d~v~d~~-g----~-----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSL-A----G-----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECC-C----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEecc-c----c-----hHHHHHHHHhcCCCEEEEE
Confidence 1236799999622 1 1 2345556789999998854
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.67 E-value=0.15 Score=43.47 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=55.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 140 (391)
++|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+. ++.++.+|+.+..
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHH
Confidence 579999999999885 5677888898 79999999 777777666666553 4888899986631
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
+..+.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 234799999853
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.33 E-value=0.32 Score=42.34 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=78.6
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccccc
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~~~ 138 (391)
.|...+.+.+.+.+.... ..|+.||||-=.-...+......+++=||.-++++.-++.+.+.+.. ....++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~g~-~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVIDGI-RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTTC-CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhhCC-CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 344444455555443222 44666999976655544222222566666657888888888776653 346778888765
Q ss_pred CC--------C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 139 IV--------L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~--------~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
-. + +...-++++|.+.+++..+ ....++..+..+..||..+++...
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~-~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECC
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccCCHH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 20 1 2455778888876666554 578889999999999999887643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.32 E-value=0.16 Score=43.42 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=57.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
++|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+...++..+.+|+.+..-
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999886 5778888898 79999999 7777666666555545568899999877420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 16799999853
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.10 E-value=0.14 Score=43.79 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 140 (391)
++++++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+. ++..+.+|+.+..
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 579999999999886 5677888899 79999999 777666666666553 3899999987641
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
+.++.|++|.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 235789999853
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.06 E-value=0.18 Score=43.04 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=56.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---------CC
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------LP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~ 142 (391)
.++|+++|--|.++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+. ++..+.+|+.+.. ..
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 3689999999998885 5677888898 69999999 778777777776654 4889999987642 01
Q ss_pred --CcccEEEEc
Q 016320 143 --EKVDVIISE 151 (391)
Q Consensus 143 --~~~D~Ivs~ 151 (391)
+..|++|.+
T Consensus 79 ~~g~iDilVnn 89 (260)
T d1zema1 79 DFGKIDFLFNN 89 (260)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCCCeehhh
Confidence 579999975
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.89 E-value=0.032 Score=45.14 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----
Q 016320 69 SIFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----- 139 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG~--G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----- 139 (391)
++.+.....++++||-.|++. |..++.+++. |+ +|+++.-+ +..+.++ ..|.. .++.-+-.+.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~ 91 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFD---AAFNYKTVNSLEEAL 91 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSCSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHH----hhhhh---hhcccccccHHHHHH
Confidence 344455567899999888865 5566777776 66 89999987 5554444 44543 2232221211
Q ss_pred --CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 140 --VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 --~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.-+..+|+|+-. .. ...++...++|+++|.++..
T Consensus 92 ~~~~~~Gvd~v~D~----vG------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 92 KKASPDGYDCYFDN----VG------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHCTTCEEEEEES----SC------HHHHHHHGGGEEEEEEEEEC
T ss_pred HHhhcCCCceeEEe----cC------chhhhhhhhhccCCCeEEee
Confidence 123679998841 11 23466778999999998854
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.77 E-value=0.12 Score=41.15 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cC------
Q 016320 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~------ 139 (391)
+.+.....++.+||-.|||. |.+++.++++ |++.|+++|.+ +-++.+++. |.. .++..+-. +.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence 44445567899999999984 4566666664 88899999998 666666643 432 22221111 10
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 -~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
..+..+|+|+-.. + -...++....++++||.++
T Consensus 93 ~~~~~g~D~vid~~-G--------~~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFECI-G--------NVKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEECS-C--------CHHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeecC-C--------CHHHHHHHHHhhcCCceeE
Confidence 1235799998521 1 1234556667788886554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.55 E-value=0.22 Score=39.05 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=54.6
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016320 81 TVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcG~--G~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~l 157 (391)
+|.-||+|. +.++..+.+.|. +|++.|.+ +.++.|+ +.+.- .....+...+ ...|+|+.-.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~----~~~~~---~~~~~~~~~~---~~~DiIilav----- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQLV---DEAGQDLSLL---QTAKIIFLCT----- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTSC---SEEESCGGGG---TTCSEEEECS-----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHH----Hhhcc---ceeeeecccc---cccccccccC-----
Confidence 577789984 346667777787 79999999 6555444 33432 1222233222 6789988522
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016320 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.......+++.+...|+++.+++-.
T Consensus 66 -p~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 66 -PIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp -CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred -cHhhhhhhhhhhhhhcccccceeec
Confidence 1134667888888889998876543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.51 E-value=0.022 Score=45.75 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEECC-cc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEE
Q 016320 74 KHHFQGKTVLDVGT-GS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G~-G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~D~I 148 (391)
....++++||-.|+ |. |.+++.++++ |+ +|++++.+ +-.+.++ +.|....+. ..+. ......+.+|+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~----~lGa~~~i~--~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL----ALGAEEAAT--YAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH----HTTCSEEEE--GGGHHHHHHHTTSEEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccc----ccccceeee--hhhhhhhhhcccccccc
Confidence 45678899999885 43 6777777776 77 79999987 5555544 345432111 1111 112223679998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+- ..+ + . +....+.|+|+|+++..
T Consensus 96 ~d-~~G-----~-~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 96 LE-VRG-----K-E----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EE-CSC-----T-T----HHHHHTTEEEEEEEEEC
T ss_pred cc-ccc-----h-h----HHHHHHHHhcCCcEEEE
Confidence 74 222 1 1 34455789999998754
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.053 Score=48.13 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred CEEEEECCcccHHHHHHHHcCCC--eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEcc
Q 016320 80 KTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcG~G~ls~~~a~~g~~--~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~Ivs~~ 152 (391)
.+|+|+.||.|.+++.+.++|.. -|.++|++ .+++..+.+. ++ ..++.+|+.++... ..+|+++.-+
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~-~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PH-TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TT-SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CC-CCcccCchhhCCHhHcCCCCccEEEeec
Confidence 47999999999999888888864 47899999 6555555432 22 56778898877532 3789999744
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.18 E-value=0.19 Score=43.12 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=58.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC---------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~--------- 141 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.+.+.. .++..+.+|+.+..-
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4688999999999885 5677888898 79999999 7788777777766543 358999999876420
Q ss_pred C--CcccEEEEc
Q 016320 142 P--EKVDVIISE 151 (391)
Q Consensus 142 ~--~~~D~Ivs~ 151 (391)
. ++.|++|.+
T Consensus 81 ~~~g~iDilvnn 92 (272)
T d1xkqa_ 81 KQFGKIDVLVNN 92 (272)
T ss_dssp HHHSCCCEEEEC
T ss_pred HHhCCceEEEeC
Confidence 1 579999975
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.11 E-value=0.22 Score=39.27 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=53.6
Q ss_pred EEEEECCcc--cHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016320 81 TVLDVGTGS--GILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 81 ~VLDlGcG~--G~ls~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~ 156 (391)
+|+-||||. |.++..+.+.|. .+|+++|.+ +.++.|++ .+.. .....+..... ....|+|+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~~---~~~~~~~~~~~-~~~~dlIila~p--- 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII---DEGTTSIAKVE-DFSPDFVMLSSP--- 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC---SEEESCGGGGG-GTCCSEEEECSC---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhcc---hhhhhhhhhhh-ccccccccccCC---
Confidence 588899985 346666767774 479999999 77766654 2322 12222222211 146798885221
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEc
Q 016320 157 LLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 157 l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
......++..+...++++.+++-
T Consensus 72 ---~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 72 ---VRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp ---HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ---chhhhhhhhhhhccccccccccc
Confidence 12355677888888888876553
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.34 Score=40.82 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
...|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++...+.+...+ .++..+.+|+.+..
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999986 5777888899 79999999 77766666666655 34889999998752
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
.-+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 125799998753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.23 Score=40.01 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCC--CEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCC
Q 016320 75 HHFQG--KTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLP 142 (391)
Q Consensus 75 ~~~~~--~~VLDlGc--G~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~ 142 (391)
...++ +.||-.|+ |.|..++.+|+. |++.|+++..+ +... +..+..+.. .++...-.++ ..+
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~---~l~~~~gad---~vi~~~~~~~~~~~~~~~~ 98 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL---FLTSELGFD---AAVNYKTGNVAEQLREACP 98 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHH---HHHHHSCCS---EEEETTSSCHHHHHHHHCT
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHh---hhhhcccce---EEeeccchhHHHHHHHHhc
Confidence 33444 78998873 458899998885 88778887776 4322 223344443 2332221111 124
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
+.+|+|+-.. + ...++...+.|+++|+++..
T Consensus 99 ~GvDvv~D~v-G---------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 99 GGVDVYFDNV-G---------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp TCEEEEEESS-C---------HHHHHHHHTTEEEEEEEEEC
T ss_pred cCceEEEecC-C---------chhHHHHhhhccccccEEEe
Confidence 6799998421 1 12466677899999998754
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.72 E-value=0.3 Score=39.39 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=51.4
Q ss_pred HhcCCCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---C-CC
Q 016320 71 FQNKHHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---V-LP 142 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-~~ 142 (391)
.......++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+..+.- +.+...|+.+. . .-
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAEAV 90 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHHHT
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHHHh
Confidence 333456789999999988764 5677788898 79999999 666555555444321 34444454432 1 12
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+..|++|++.
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 6789999753
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.59 E-value=0.49 Score=42.91 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=44.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--C-CCeEEEEech-HHHHHHHHHHHHcCCCC---cEEEEE
Q 016320 77 FQGKTVLDVGTGSGILAIWSAQA--G-ARKVYAVEAT-KMSDHARTLVKANNLQD---VVEVIE 133 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~ls~~~a~~--g-~~~V~avD~s-~~~~~a~~~~~~~~~~~---~v~~~~ 133 (391)
.++.+++|+|+-.|..+..+++. + ..+|+++|++ ...+..+++++.+...+ ++.++.
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 35679999999999988776653 2 3589999999 88899999998877643 355544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.40 E-value=0.28 Score=42.15 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=57.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~---------- 141 (391)
++|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+.. .++..+.+|+.+..-
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677788898 79999999 7777777777666543 468999999877520
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 15789999853
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.35 E-value=0.2 Score=39.65 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=34.6
Q ss_pred HHhcCCCCCCCEEEEECCccc-HHHHHH-HHcCCCeEEEEech-HHHHHHHH
Q 016320 70 IFQNKHHFQGKTVLDVGTGSG-ILAIWS-AQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~G-~ls~~~-a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
+.+.....++.+||-+|+|.+ .++..+ +..++.+|+++|.+ +-++.|++
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 444445678899999999984 444434 44488899999999 66666554
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.21 E-value=0.3 Score=41.57 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC---------C
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV---------L 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~---------~ 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+.. .++.++.+|+.+.. .
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 3688999999998885 4677788898 79999999 7777777777666543 45899999987642 0
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 81 ~~~g~iDilvnnA 93 (264)
T d1spxa_ 81 GKFGKLDILVNNA 93 (264)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCEeeccc
Confidence 15799998753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.14 E-value=0.41 Score=37.82 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=55.3
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CCCCcEE----EEEcccccCCCCCcccEEEE
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NLQDVVE----VIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~----~~~~d~~~~~~~~~~D~Ivs 150 (391)
++|--||+|. | .++..++++|. .|+.+|.+ +-++.+++..... ....... ....|..+. -..+|+|+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA--VKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH--HTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH--hcCCCEEEE
Confidence 5788899997 3 35677888888 79999998 6555444321100 0000001 111111111 156899886
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016320 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 ~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~ 182 (391)
-. .......+++.+..+|+++..++.
T Consensus 79 ~v------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 79 VV------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp CS------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EE------chhHHHHHHHHhhhccCCCCEEEE
Confidence 22 122457788889999999987664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.6 Score=37.63 Aligned_cols=101 Identities=13% Similarity=0.226 Sum_probs=64.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------CCC--------------CcEEEEEcc
Q 016320 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------NLQ--------------DVVEVIEGS 135 (391)
Q Consensus 80 ~~VLDlGcG~-G-~ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~~~--------------~~v~~~~~d 135 (391)
++|--||+|+ | .++..++++|. .|+.+|.+ +.++.+++.++.. +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 5789999997 3 35777888888 79999999 8888877765432 221 0122221 2
Q ss_pred cccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 136 ~~~~~~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
..+. -...|+|+-.. .........++..+.++++++.++.-...++-
T Consensus 83 ~~~a--~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 83 AASV--VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp HHHH--TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred hHhh--hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 2111 14678887522 22223467889999999999987765554443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.87 E-value=0.19 Score=40.26 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCC
Q 016320 70 IFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPE 143 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~--G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 143 (391)
+.......++.+||--|++. |.+++.+++. |+ +|+++--+ +..+.+++ .|....+..-..+.+.. .-++
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~ 97 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQ 97 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSC
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhhcc
Confidence 33344455678899998654 5677777776 77 68998877 65666554 34332121111111111 1236
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016320 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~~~ 185 (391)
.+|+|+-.. + . ..+....+.|+++|+++..-.
T Consensus 98 gvD~vid~v-g----g-----~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 98 RWAAAVDPV-G----G-----RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CEEEEEECS-T----T-----TTHHHHHHTEEEEEEEEECSC
T ss_pred CcCEEEEcC-C----c-----hhHHHHHHHhCCCceEEEeec
Confidence 899887422 1 1 125556678999999885533
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.86 E-value=0.35 Score=40.88 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++..+..|+.+..
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999998874 3555666688 79999999 777777777766553 4889999987742
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
.-+++|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 116899999754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.56 E-value=0.35 Score=41.28 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 140 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+.. .+.+.++.+|+.+..
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999885 4566778898 79999999 666555544432 345888999987642
Q ss_pred CCCcccEEEEcc
Q 016320 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivs~~ 152 (391)
.-+++|++|.+.
T Consensus 79 ~~g~iD~lVnnA 90 (268)
T d2bgka1 79 KHGKLDIMFGNV 90 (268)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCcceecccc
Confidence 015799999743
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.24 E-value=0.3 Score=39.28 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHhcCCCCCCCEEEEECCc---ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016320 69 SIFQNKHHFQGKTVLDVGTG---SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcG---~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 140 (391)
++.......++..||-+.+| .|..++.+|++ |+ +|+++--+ +..+...+.+++.|....|..-..+..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 97 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence 34444556677778887333 35677777776 88 57766433 444555555666665432211111222210
Q ss_pred ------CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 141 ------LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ------~~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
....+|+|+- .++ ...+....+.|+|+|+++..
T Consensus 98 ~~~~~~~g~~vdvv~D-~vg---------~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALN-CVG---------GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHTCCEEEEEE-SSC---------HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHhhccCCceEEEE-CCC---------cchhhhhhhhhcCCcEEEEE
Confidence 1356899884 211 12244556789999998854
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.38 Score=40.66 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=53.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016320 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 142 (391)
+|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+....-..++.++.+|+.+..- -
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 57899999998885 4667778898 79999999 7666655555443333458899999877520 1
Q ss_pred CcccEEEEcc
Q 016320 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivs~~ 152 (391)
+++|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 5799999854
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.09 E-value=0.38 Score=40.79 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=55.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---------C--
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------L-- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~-- 141 (391)
++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+- ++.++.+|+.+.. .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999988875 4566777788 79999999 777777776766553 4888999987742 0
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 15799998853
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.03 E-value=0.57 Score=39.47 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=53.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHH-HHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSD-HARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
++++++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++ .+++..+..+. ++..+.+|+.+..-
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677888898 79999998 5544 44444455553 38888999876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.99 E-value=0.32 Score=38.52 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHH
Q 016320 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG~-G~ls~~~a~-~g~~~V~avD~s-~~~~~a~~ 118 (391)
+.+.....++.+||-+|+|. |.++..+++ .|+.+|+++|.+ +-.+.+++
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence 34444567899999999975 334444444 477899999999 66666654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=89.64 E-value=0.41 Score=40.59 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 140 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.++.+ + ..+.+++..+..+. ++.++.+|+.+..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV--KTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence 3678999999998875 5677788898 79999998 4 44555555555553 3889999987642
Q ss_pred -CCCcccEEEEcc
Q 016320 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivs~~ 152 (391)
.-++.|++|.+.
T Consensus 83 ~~~g~iDilVnnA 95 (260)
T d1h5qa_ 83 ADLGPISGLIANA 95 (260)
T ss_dssp HHSCSEEEEEECC
T ss_pred HHhCCCcEecccc
Confidence 116899998753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.23 E-value=0.75 Score=38.78 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=53.7
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CCC
Q 016320 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LPE 143 (391)
Q Consensus 79 ~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 143 (391)
|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++.++.+|+.+.. .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6788999998875 5677788898 79999999 777777776766654 3899999987752 016
Q ss_pred cccEEEEc
Q 016320 144 KVDVIISE 151 (391)
Q Consensus 144 ~~D~Ivs~ 151 (391)
+.|++|.+
T Consensus 79 ~iDilVnn 86 (257)
T d2rhca1 79 PVDVLVNN 86 (257)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEec
Confidence 79999975
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.05 E-value=0.79 Score=38.96 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCEE-EEECCcccH---HHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 79 GKTV-LDVGTGSGI---LAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 79 ~~~V-LDlGcG~G~---ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
|++| |-=|+++|+ ++..+++. |+ +|+.++.+ +-++.+.+.++..+.. +.++.+|+.+..-
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCc--EEEEEEecCCHHHHHHHHHHHHHh
Confidence 4555 555777775 34556666 55 89999999 7777777777766543 8899999877521
Q ss_pred CCcccEEEEcc-cccc-ccCcc---hH-----------HHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEW-MGYF-LLRES---MF-----------DSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~-~~~~-l~~e~---~~-----------~~~l~~~~~~LkpgG~~i~~ 183 (391)
-+++|++|.+. +... ...+. .+ -.+.+.+..+|+++|.++..
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 16899999864 1111 11110 11 12345556778888887643
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.99 Score=38.97 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred CCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC---CCCcEEEEEcccccCCC------
Q 016320 75 HHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN---LQDVVEVIEGSVEDIVL------ 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~------ 141 (391)
..++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.... ...++..+.+|+.+..-
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 35789999999999885 4566778898 79999999 66665555444321 22358899999877520
Q ss_pred -----CCcccEEEEcc
Q 016320 142 -----PEKVDVIISEW 152 (391)
Q Consensus 142 -----~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 87 ~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 87 STLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCeEEEEeec
Confidence 15799999853
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.7 Score=38.69 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=49.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCc
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~ 144 (391)
.++|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+ +.+ .+..++.|+.+.. .-++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~---~~~---~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVR---ECP---GIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HST---TCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHH---hcC---CCeEEEEeCCCHHHHHHHHHHhCC
Confidence 3689999999999885 5677788898 79999999 65443332 221 2778888886641 1168
Q ss_pred ccEEEEcc
Q 016320 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivs~~ 152 (391)
+|++|.+.
T Consensus 77 iDilVnnA 84 (244)
T d1pr9a_ 77 VDLLVNNA 84 (244)
T ss_dssp CCEEEECC
T ss_pred ceEEEecc
Confidence 99999753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.40 E-value=0.39 Score=37.90 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=57.4
Q ss_pred HHhcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--C--CC
Q 016320 70 IFQNKHHFQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--I--VL 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG--~G~ls~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~--~~ 141 (391)
+.+.-...++..||--|++ .|.+++.+|+. |+ +|+++--+ +..+.+++. |.. ..+...+... . ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad--~vi~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS--EVISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS--EEEEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----ccc--ceEeccchhchhhhccc
Confidence 3333333456678877753 46777778876 88 69999888 666665543 433 1121112111 1 12
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016320 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++.+|+|+-.. + ...+....+.|+++|+++..
T Consensus 88 ~~gvd~vid~v-g---------g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 88 KQQWQGAVDPV-G---------GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCCEEEEEESC-C---------THHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEecC-c---------HHHHHHHHHHhccCceEEEe
Confidence 36799987422 1 13466677889999998754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.39 E-value=0.78 Score=39.36 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHH-HHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSD-HARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 140 (391)
.++|+++|--|+..|+ ++..+++.|+ +|+.+|.+ ..++ .+++.....+ .++.++..|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 4678999999998874 5666777898 79999998 5554 4444445544 33888889987642
Q ss_pred -CCCcccEEEEcc
Q 016320 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivs~~ 152 (391)
..+..|+++.+.
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 126789998743
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.91 Score=39.90 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech--HHHHHHHHHHHHcC--------------
Q 016320 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT--KMSDHARTLVKANN-------------- 124 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~ls~~~a~~g~~~V~avD~s--~~~~~a~~~~~~~~-------------- 124 (391)
.|...+...+.+.+...+...|+.||||.=.....+..... .+.-+|++ ++++.-++.++++.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~ 157 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTA 157 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccc
Confidence 45666656665555445567899999998777766654433 45555655 45544444443321
Q ss_pred ------CCCcEEEEEcccccCC---------C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016320 125 ------LQDVVEVIEGSVEDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ------~~~~v~~~~~d~~~~~---------~-~~~~D~Ivs~~~~~~l~~e~~~~~~l~~~~~~LkpgG~~i 181 (391)
-.++..++..|++++. + +...-++++|.+...+..+ ....+++.+.+... ++.+|
T Consensus 158 ~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~-~~~~li~~~~~~f~-~~~~i 228 (328)
T d1rjda_ 158 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKFS-HGLWI 228 (328)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHCS-SEEEE
T ss_pred cccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHH-HHHHHHHHHHHhCC-CceEE
Confidence 1234678888887742 1 2445688998876665544 46677777766554 45444
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.62 E-value=0.79 Score=38.94 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech--HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT--KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 140 (391)
.++|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.. +.++.+|+.+..
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSD--AACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCc--eeeEeCCCCCHHHHHHHHHHHH
Confidence 3678999999999886 6777888899 69998876 5666666666666643 889999987742
Q ss_pred -CCCcccEEEEcc
Q 016320 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivs~~ 152 (391)
..++.|+++.+.
T Consensus 92 ~~~g~idilV~na 104 (272)
T d1g0oa_ 92 KIFGKLDIVCSNS 104 (272)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCcccccc
Confidence 116789998743
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.02 E-value=0.88 Score=38.20 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+. ..+++.++.+|+.+..-
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999998875 4667788899 69999999 76665555443 23458999999877420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 79 ~~G~iDiLVnnA 90 (251)
T d1zk4a1 79 AFGPVSTLVNNA 90 (251)
T ss_dssp HHSSCCEEEECC
T ss_pred HhCCceEEEecc
Confidence 16799999754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.00 E-value=0.86 Score=38.18 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=51.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. .+++.++++|+.+..-
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence 4688999999999885 5677888899 79999999 6554443332 2448889999876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~g~idilinnA 88 (244)
T d1nffa_ 77 AFGGLHVLVNNA 88 (244)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCeEEEECC
Confidence 15789998753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.96 E-value=0.98 Score=37.68 Aligned_cols=68 Identities=26% Similarity=0.232 Sum_probs=48.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 145 (391)
++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+ +.+ .+..+..|+.+.. --++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~---~~~---~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAK---ECP---GIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HST---TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---hcC---CCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 578999999998885 5677788898 79999998 54433322 221 2778888887642 11689
Q ss_pred cEEEEc
Q 016320 146 DVIISE 151 (391)
Q Consensus 146 D~Ivs~ 151 (391)
|++|.+
T Consensus 76 DilVnn 81 (242)
T d1cyda_ 76 DLLVNN 81 (242)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 999975
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=86.70 E-value=1.2 Score=37.42 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=51.8
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CCCc
Q 016320 80 KTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LPEK 144 (391)
Q Consensus 80 ~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~ 144 (391)
+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+- ++.++.+|+.+.. .-++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 456888988875 4667788898 79999999 777777776766653 4888999987752 0168
Q ss_pred ccEEEEc
Q 016320 145 VDVIISE 151 (391)
Q Consensus 145 ~D~Ivs~ 151 (391)
.|++|.+
T Consensus 79 iDilVnn 85 (255)
T d1gega_ 79 FDVIVNN 85 (255)
T ss_dssp CCEEEEC
T ss_pred ccEEEec
Confidence 9999975
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.59 E-value=1.6 Score=32.34 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=40.8
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEE
Q 016320 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIIS 150 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~Ivs 150 (391)
+|+-+|+|. |. ++..+.+.|. .|+.+|.+ +.++.++. ..+ +.++.+|..+.. .. +.+|.+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~---~~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA---EID----ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HCS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhh---hhh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence 577888764 32 2334445576 79999999 76655443 222 688999987752 22 68899887
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.38 E-value=1.6 Score=38.82 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=43.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-------CCeEEEEechHHHHH-HHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016320 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-------ARKVYAVEATKMSDH-ARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcG~G~ls~~~a~~-g-------~~~V~avD~s~~~~~-a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 144 (391)
+...+...|+|+|+|+|.|+.-+.+. . ..+++.+|.|+.+.. -++..+ .. .++.++ .++.+++ ..
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~-~~i~w~-~~~~~~~--~~ 148 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GI-RNIHWH-DSFEDVP--EG 148 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TC-SSEEEE-SSGGGSC--CS
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--cc-ccceec-cChhhcc--cC
Confidence 33334568999999999998766553 1 125899999944433 333322 22 235554 3455443 33
Q ss_pred ccEEEE-ccccc
Q 016320 145 VDVIIS-EWMGY 155 (391)
Q Consensus 145 ~D~Ivs-~~~~~ 155 (391)
.-+|+| |++..
T Consensus 149 ~g~iiaNE~fDA 160 (365)
T d1zkda1 149 PAVILANEYFDV 160 (365)
T ss_dssp SEEEEEESSGGG
T ss_pred CeEEEecccCcc
Confidence 467887 44433
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.28 E-value=1.3 Score=37.04 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ . +.+.+.++..+ .++.++.+|+.+..-
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4688999999998875 5677788899 79999987 4 23344455544 348899999877420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~G~iDilVnnA 88 (247)
T d2ew8a1 77 TFGRCDILVNNA 88 (247)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=85.94 E-value=3.5 Score=32.06 Aligned_cols=81 Identities=9% Similarity=0.122 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHH-HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGIL-AIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~l-s~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 142 (391)
-|.+.+.+.-...++++||-+|||--.- ...+...+.++|+.+.-+ +-++...+..... ..+.....+... .
T Consensus 4 Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~~---~ 77 (171)
T d1p77a1 4 GLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSIP---L 77 (171)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGCC---C
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhcccc---c
Confidence 3445555443456889999999985332 223223355689999888 5444444434322 225555444322 2
Q ss_pred CcccEEEEc
Q 016320 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivs~ 151 (391)
..+|+||.-
T Consensus 78 ~~~diiIN~ 86 (171)
T d1p77a1 78 QTYDLVINA 86 (171)
T ss_dssp SCCSEEEEC
T ss_pred cccceeeec
Confidence 689999974
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.89 Score=38.21 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+ +. ..+.++.+|+.+..-
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~---~~---~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ---EL---PGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HC---TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---hc---CCCeEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999885 5677788898 79999998 65544332 22 127888999876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (250)
T d1ydea1 76 RFGRLDCVVNNA 87 (250)
T ss_dssp HHSCCCEEEECC
T ss_pred hcCCCCEEEecc
Confidence 15799999854
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.69 E-value=3.2 Score=34.31 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=50.2
Q ss_pred CCCCCEEEEECCcc--cH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----------
Q 016320 76 HFQGKTVLDVGTGS--GI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------- 139 (391)
Q Consensus 76 ~~~~~~VLDlGcG~--G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------- 139 (391)
.+++++||--|+++ |+ ++..+++.|+ +|+.++.+ +..+.+.+.....+- ......|..+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAEL 77 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHh
Confidence 36789999998865 63 6678888899 69999998 766777766666543 34455554332
Q ss_pred -CCCCcccEEEEcc
Q 016320 140 -VLPEKVDVIISEW 152 (391)
Q Consensus 140 -~~~~~~D~Ivs~~ 152 (391)
......|+++.+.
T Consensus 78 ~~~~~~~d~~v~~a 91 (258)
T d1qsga_ 78 GKVWPKFDGFVHSI 91 (258)
T ss_dssp HTTCSSEEEEEECC
T ss_pred hhcccccceEEEee
Confidence 1226788888753
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.94 E-value=1 Score=38.06 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=54.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.++.+ + .++.+.+.++..+. ++.++..|+.+..-
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999998885 4667778898 79999987 4 56666666666553 48889999876420
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 81 ~~~G~iDiLVnnA 93 (261)
T d1geea_ 81 KEFGKLDVMINNA 93 (261)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCEeeccc
Confidence 15799999853
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.90 E-value=1.2 Score=37.51 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEE-ech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAV-EAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~av-D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 140 (391)
.+.|++||--|++.|+ ++..+++.|+ +|+.+ ..+ +.++.+.+.+...+. ++.++.+|+.+..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence 4678999999988773 5677788899 56654 455 667777777777764 3889999987642
Q ss_pred -CCCcccEEEEcc
Q 016320 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivs~~ 152 (391)
..+..|++|.+.
T Consensus 80 ~~~g~idilinna 92 (259)
T d1ja9a_ 80 SHFGGLDFVMSNS 92 (259)
T ss_dssp HHHSCEEEEECCC
T ss_pred HHcCCCcEEEecc
Confidence 015799998743
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=1.2 Score=37.05 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=50.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++...+... .++..+..|+.+.. .
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 578999999998875 5667778898 79999999 66655544432 23788888987642 1
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 15899999753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.91 E-value=0.26 Score=41.92 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=37.6
Q ss_pred EEEEcccccC--CCC-CcccEEEEcccccccc---------CcchHHHHHHHHhccccCCeEEEcc
Q 016320 130 EVIEGSVEDI--VLP-EKVDVIISEWMGYFLL---------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 130 ~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~---------~e~~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
.++.+|..++ .++ +++|+|+.++. |... +...+...+..+.|+|||+|.++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPP-Yn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCC-CCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 5777888775 344 89999999884 3221 1123566788899999999988754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.71 E-value=1.4 Score=36.93 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=50.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. + .++..+.+|+.+..-
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999885 5677788898 79999998 6554443322 3 348889999876420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (256)
T d1k2wa_ 77 WGSIDILVNNA 87 (256)
T ss_dssp HSCCCEEEECC
T ss_pred hCCccEEEeec
Confidence 15799999853
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.62 E-value=1.3 Score=37.24 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++|+++|--|.+.|+ ++..+++.|+ +|+.+|.+ +.++.. +++. .+++.++++|+.+..-
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAAT---AREL--GDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHTT--GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHHh--CCceEEEEcccCCHHHHHHHHHHHHH
Confidence 3688999999999885 5677788899 69999998 544332 2222 3458999999876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (254)
T d1hdca_ 76 EFGSVDGLVNNA 87 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCccEEEecC
Confidence 15799988743
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.20 E-value=1.3 Score=37.52 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 141 (391)
++|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+......- ..+.+...|..+.. .
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 578999999999985 5677888898 79999999 766665554433222 33777777766531 0
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+..|+++.+.
T Consensus 90 ~g~~~~li~na 100 (269)
T d1xu9a_ 90 MGGLDMLILNH 100 (269)
T ss_dssp HTSCSEEEECC
T ss_pred hCCcccccccc
Confidence 15688887643
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=82.88 E-value=1.9 Score=36.62 Aligned_cols=70 Identities=29% Similarity=0.300 Sum_probs=50.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 141 (391)
++|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+.. + .++..+.+|+.+...
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G--DNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeeEEecccccHHHHHHHHHHHHHH
Confidence 578999999998875 5677788898 79999999 6554433322 2 348889999876420
Q ss_pred CCcccEEEEcc
Q 016320 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 77 ~g~idilvnnA 87 (276)
T d1bdba_ 77 FGKIDTLIPNA 87 (276)
T ss_dssp HSCCCEEECCC
T ss_pred hCCcccccccc
Confidence 15789998743
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=82.85 E-value=1.1 Score=39.93 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=18.9
Q ss_pred hHHHHHHHHhccccCCeEEEcc
Q 016320 162 MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~~i~~ 183 (391)
++..+|+.+.+=|+|||.+++.
T Consensus 187 D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 187 DHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp HHHHHHHHHHHHBCTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999998864
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=82.70 E-value=2.4 Score=35.01 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=50.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++|+++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++ +..++. ..++.++++|+.+.+-
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLA---EAVAAL--EAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH---HHHHHc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999875 4666777898 79999999 5443 333333 3458889999876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-+++|++|.+.
T Consensus 76 ~~g~iDiLinnA 87 (241)
T d2a4ka1 76 EFGRLHGVAHFA 87 (241)
T ss_dssp HHSCCCEEEEGG
T ss_pred HhCCccEecccc
Confidence 15799999853
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.70 E-value=1.3 Score=37.20 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHH---cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQ---AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~---~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 139 (391)
.++++++|--|+++|+ ++..+|+ .|+ +|+.++.+ +.++.+.+.+...+...++.++.+|+.+.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 3567778887988876 3455555 366 79999999 77777666665555455689999998763
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.25 E-value=0.92 Score=33.74 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=37.9
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----C-CcccEEEE
Q 016320 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----P-EKVDVIIS 150 (391)
Q Consensus 81 ~VLDlGcG~-G~-ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~Ivs 150 (391)
+++-+|+|. |. ++..+.+.|. .|+++|.+ +.++.++ ..+ ..++.+|..+... . ..+|.+++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~----~~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYA----SYA----THAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTT----TTC----SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHH----HhC----CcceeeecccchhhhccCCccccEEEE
Confidence 456667764 33 3444555677 69999999 6655443 222 4677788876531 1 57887775
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.19 E-value=1.4 Score=36.70 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=48.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------C-
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------P- 142 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~- 142 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+ .. . +..+.+|+.+..- .
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~---~~--~--~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAE---AV--G--AHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TT--T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---Hc--C--CeEEEEecCCHHHHHHHHHHHHHh
Confidence 578999999999885 4667778898 79999998 65544432 22 1 6788889876420 1
Q ss_pred -CcccEEEEc
Q 016320 143 -EKVDVIISE 151 (391)
Q Consensus 143 -~~~D~Ivs~ 151 (391)
+++|++|.+
T Consensus 75 ~g~iDilVnn 84 (242)
T d1ulsa_ 75 LGRLDGVVHY 84 (242)
T ss_dssp HSSCCEEEEC
T ss_pred cCCceEEEEC
Confidence 579999874
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=80.96 E-value=1.3 Score=35.09 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccH--HHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016320 65 AYFNSIFQNKHHFQGKTVLDVGTGSGI--LAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcG~G~--ls~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
-|.+.+...-...++++||-+|||--. ....+++.|+++++.+..+ +.++.+..
T Consensus 4 Gf~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 4 GHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 455666655445678999999998422 2344556688889999887 54444443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.73 E-value=1.5 Score=36.84 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech--HHHHHHHHHH-HHcCCCCcEEEEEcccccCCC---------
Q 016320 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT--KMSDHARTLV-KANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s--~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~--------- 141 (391)
++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+ +..+. ++.++..|+.+..-
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV--KVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS--CEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHH
Confidence 478999998998886 5667888898 79999986 4455554443 33343 38899999877420
Q ss_pred --CCcccEEEEcc
Q 016320 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 79 ~~~G~iDiLVnnA 91 (260)
T d1x1ta1 79 RQMGRIDILVNNA 91 (260)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHhCCCcEEEeec
Confidence 15799999753
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.69 E-value=1.3 Score=37.09 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016320 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcG~G~---ls~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. + .+..++..|+.+..-
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHH
Confidence 3678999999988874 5667778898 69999999 6555444332 2 347788888876420
Q ss_pred -CCcccEEEEcc
Q 016320 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivs~~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~g~iDilVnnA 88 (253)
T d1hxha_ 77 RLGTLNVLVNNA 88 (253)
T ss_dssp HHCSCCEEEECC
T ss_pred HhCCCCeEEecc
Confidence 15789999854
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=80.44 E-value=0.66 Score=39.97 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=41.4
Q ss_pred EEEEEcccccC--CCC-CcccEEEEccccccccC------------cchHHHHHHHHhccccCCeEEEcccceeE
Q 016320 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLR------------ESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 129 v~~~~~d~~~~--~~~-~~~D~Ivs~~~~~~l~~------------e~~~~~~l~~~~~~LkpgG~~i~~~~~~~ 188 (391)
-+++++|..++ .++ +++|+|+.++. |.... ...+...+..+.++|+|+|.+++.....+
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPP-Y~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~ 86 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 86 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCC-CcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence 48999998764 234 89999999873 33211 01245678889999999999887654443
|