Your job contains 1 sequence.
>016325
MQCTQICRGNKMMSSTSRDDHRDDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRK
QHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAG
GDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCK
QVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKC
EDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYA
EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRE
LKNSKREDLVAKEEKLQKEEEMNLDVGGNKQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016325
(391 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100277 - symbol:SNL1 "AT3G01320" species:3702... 518 1.9e-48 1
TAIR|locus:2147845 - symbol:SNL2 "AT5G15020" species:3702... 488 3.0e-45 1
DICTYBASE|DDB_G0281045 - symbol:DDB_G0281045 "paired amph... 335 3.1e-35 2
ZFIN|ZDB-GENE-070620-3 - symbol:sin3aa "SIN3 homolog A, t... 296 9.2e-34 3
ZFIN|ZDB-GENE-030131-8264 - symbol:sin3b "SIN3 homolog B,... 310 2.2e-33 2
UNIPROTKB|F1PH07 - symbol:SIN3A "Uncharacterized protein"... 300 1.3e-32 2
UNIPROTKB|F1SJ69 - symbol:SIN3A "Uncharacterized protein"... 300 2.8e-32 2
UNIPROTKB|E1BX21 - symbol:SIN3A "Uncharacterized protein"... 301 3.1e-32 2
UNIPROTKB|Q96ST3 - symbol:SIN3A "Paired amphipathic helix... 300 3.1e-32 2
UNIPROTKB|F1MTR3 - symbol:SIN3A "Uncharacterized protein"... 300 3.1e-32 2
UNIPROTKB|J9P8L1 - symbol:SIN3A "Uncharacterized protein"... 300 3.1e-32 2
MGI|MGI:107157 - symbol:Sin3a "transcriptional regulator,... 300 3.1e-32 2
RGD|1311598 - symbol:Sin3a "SIN3 transcription regulator ... 300 3.2e-32 2
FB|FBgn0022764 - symbol:Sin3A "Sin3A" species:7227 "Droso... 281 5.4e-32 3
UNIPROTKB|F1NMJ8 - symbol:SIN3B "Uncharacterized protein"... 313 2.0e-31 2
UNIPROTKB|J9NXS4 - symbol:SIN3B "Uncharacterized protein"... 309 3.0e-31 2
UNIPROTKB|F1S9U7 - symbol:SIN3B "Uncharacterized protein"... 309 3.1e-31 2
UNIPROTKB|E1BGW5 - symbol:LOC520505 "Uncharacterized prot... 309 3.1e-31 2
MGI|MGI:107158 - symbol:Sin3b "transcriptional regulator,... 308 3.5e-31 2
ZFIN|ZDB-GENE-030131-2066 - symbol:sin3ab "SIN3 homolog A... 280 4.1e-30 2
UNIPROTKB|F1PN34 - symbol:SIN3B "Uncharacterized protein"... 248 6.3e-26 3
UNIPROTKB|O75182 - symbol:SIN3B "Paired amphipathic helix... 241 2.2e-24 3
SGD|S000005364 - symbol:SIN3 "Component of the Sin3p-Rpd3... 255 9.3e-24 2
POMBASE|SPBC12C2.10c - symbol:pst1 "Clr6 histone deacetyl... 215 8.6e-18 3
ASPGD|ASPL0000051511 - symbol:AN1546 species:162425 "Emer... 178 1.9e-15 2
UNIPROTKB|O01319 - symbol:sin-3 "Protein SIN-3, isoform a... 180 1.6e-12 2
WB|WBGene00004117 - symbol:sin-3 species:6239 "Caenorhabd... 180 1.6e-12 2
UNIPROTKB|A5JYW9 - symbol:sin-3 "Protein SIN-3, isoform b... 180 1.6e-12 2
POMBASE|SPAC23C11.15 - symbol:pst2 "Clr6 histone deacetyl... 177 1.4e-10 2
POMBASE|SPBC1734.16c - symbol:pst3 "SIN3 family co-repres... 134 2.2e-09 2
TAIR|locus:2087203 - symbol:AT3G24260 "AT3G24260" species... 141 7.6e-07 1
TAIR|locus:2090744 - symbol:AT3G28870 "AT3G28870" species... 133 5.5e-06 1
TAIR|locus:2016024 - symbol:AT1G27250 "AT1G27250" species... 101 9.7e-05 1
UNIPROTKB|J9P9H3 - symbol:NEXN "Uncharacterized protein" ... 84 0.00051 2
>TAIR|locus:2100277 [details] [associations]
symbol:SNL1 "AT3G01320" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0016926 "protein desumoylation" evidence=RCA]
[GO:0043481 "anthocyanin accumulation in tissues in response to UV
light" evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0048440 "carpel development" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045892 GO:GO:0006351
EMBL:AC010676 Gene3D:1.20.1160.11 SUPFAM:SSF47762 eggNOG:COG5602
KO:K11644 InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
IPI:IPI00521144 RefSeq:NP_186781.4 UniGene:At.41297 HSSP:Q62141
ProteinModelPortal:Q9SRH9 SMR:Q9SRH9 IntAct:Q9SRH9 STRING:Q9SRH9
PaxDb:Q9SRH9 PRIDE:Q9SRH9 EnsemblPlants:AT3G01320.1 GeneID:821265
KEGG:ath:AT3G01320 TAIR:At3g01320 HOGENOM:HOG000030343 OMA:SKPENSA
ProtClustDB:CLSN2681550 Genevestigator:Q9SRH9 Uniprot:Q9SRH9
Length = 1372
Score = 518 (187.4 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 134/346 (38%), Positives = 190/346 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A F ++++ R Q D + F + L+ F+ I R L V +L DL+ ++N
Sbjct: 338 AFVFCEKVKDRLCSQDD--YQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQ 395
Query: 107 FVRXXXXXXXXXXXXXXXXXXXXXXXPELKTEVAKLFGDEHGDLYE-EFERYVAKCREQK 165
F E + K+ E E E + +C+++
Sbjct: 396 FFERCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKE- 454
Query: 166 HVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSF 225
++ KSIQ+LDLS C+ +PSY LP Y +P+AS RSE+G +VLND+ V ++G+E SF
Sbjct: 455 YMGKSIQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSF 514
Query: 226 KQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEG 285
K RR + EE LF+CEDDRFELD+LL + SAA + E L+ I ++ S IE
Sbjct: 515 KHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISF--SGSFRIED 572
Query: 286 HLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAH 345
H +LRCIERLY +HGLDVID L+KNP TALPVIL LKQK E + R D +K+WA+
Sbjct: 573 HFTALNLRCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWAN 632
Query: 346 VCAKNHDKLQE------MQRELKNSKREDLVAKEEKLQKEEEMNLD 385
V AKNH K + Q++ KN + L+A+ ++L KE+ N D
Sbjct: 633 VYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKEL-KEKSQNDD 677
>TAIR|locus:2147845 [details] [associations]
symbol:SNL2 "AT5G15020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] [GO:0010048 "vernalization response"
evidence=RCA] [GO:0043481 "anthocyanin accumulation in tissues in
response to UV light" evidence=RCA] [GO:0048440 "carpel
development" evidence=RCA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 EMBL:AL391146
Gene3D:1.20.1160.11 SUPFAM:SSF47762 eggNOG:COG5602 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 HSSP:Q62141
HOGENOM:HOG000030343 ProtClustDB:CLSN2681550 EMBL:AK118953
IPI:IPI00531017 PIR:T51447 RefSeq:NP_197006.2 UniGene:At.43354
ProteinModelPortal:Q9LFQ3 SMR:Q9LFQ3 STRING:Q9LFQ3 PaxDb:Q9LFQ3
PRIDE:Q9LFQ3 EnsemblPlants:AT5G15020.1 GeneID:831354
KEGG:ath:AT5G15020 TAIR:At5g15020 InParanoid:Q9LFQ3 OMA:LFRLHRV
PhylomeDB:Q9LFQ3 Genevestigator:Q9LFQ3 Uniprot:Q9LFQ3
Length = 1367
Score = 488 (176.8 bits), Expect = 3.0e-45, P = 3.0e-45
Identities = 134/366 (36%), Positives = 195/366 (53%)
Query: 40 LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
L + A F +++++R Q D + F + L+ F+ I R L V ++ D
Sbjct: 327 LKSMYNQAFLFCEKVKERLCSQDD--YQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384
Query: 100 LIHKYNVFVRXXXXXXXXXXXXXXXXXXXXXXXPELKTEVAKLFGDEHGDLYEEFERYVA 159
L+ ++N F L V G+E D + + A
Sbjct: 385 LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEENLSRSVK---GEEK-DREHKRDVEAA 440
Query: 160 KCREQ---KHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCA 216
K +E+ K++ KSIQ+LDLS C++ +PSY LP Y +P +R + G VLND+ V
Sbjct: 441 KEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSV 500
Query: 217 STGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDE 276
++G+E SFK RR + EE LF+CEDDRFELD+LL + SAA++ E+L+ I D+ E
Sbjct: 501 TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFE 560
Query: 277 KSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERR 336
S +IE H +LRCIERLY +HGLDV D + KNP ALPVIL LKQK +E + R
Sbjct: 561 GSFRIE--DHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCR 618
Query: 337 SDCNKIWAHVCAKNHDKLQE------MQRELKNSKREDLVAK----EEKLQKEEEMNLDV 386
N +WA V AKNH K + Q++ KN + LV++ +EK QKE+++ L +
Sbjct: 619 EGFNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSI 678
Query: 387 G-GNKQ 391
G +Q
Sbjct: 679 SAGYRQ 684
Score = 120 (47.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +LKE+++ F+ Q D + F +++ DF K D + VKELFKGH++LI +N
Sbjct: 53 ALTYLKEVKEMFQDQRDK-YDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNNLIFGFNT 111
Query: 107 FV 108
F+
Sbjct: 112 FL 113
Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 134 ELKTEVAKLFGDEHGDLYEEFERYV 158
E+ EV+ LF D H DL EEF R++
Sbjct: 174 EVYNEVSTLFED-HSDLLEEFTRFL 197
>DICTYBASE|DDB_G0281045 [details] [associations]
symbol:DDB_G0281045 "paired amphipathic helix (PAH)
containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 dictyBase:DDB_G0281045 GO:GO:0005634 GO:GO:0006355
EMBL:AAFI02000040 InterPro:IPR011050 SUPFAM:SSF51126
Gene3D:1.20.1160.11 SUPFAM:SSF47762 eggNOG:COG5602 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 RefSeq:XP_640783.1
ProteinModelPortal:Q54UJ3 SMR:Q54UJ3 EnsemblProtists:DDB0216409
GeneID:8622836 KEGG:ddi:DDB_G0281045 InParanoid:Q54UJ3
Uniprot:Q54UJ3
Length = 1934
Score = 335 (123.0 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 73/201 (36%), Positives = 116/201 (57%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ PSY LP+ Y P + RSE+ + VLND V TG+E FK +R+ +
Sbjct: 1180 EIDFTTCKRLGPSYRALPKNYPQPRCTGRSELAESVLNDVWVSFPTGSEDFGFKSQRKNQ 1239
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDL 292
EE LFKCED+RFELDL++ S ++ ++ + D + + + ++ +L +
Sbjct: 1240 FEENLFKCEDERFELDLIIELNASTIRVLDPILNSLIDMHDHERLNFRMP---NLDVLHH 1296
Query: 293 RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHD 352
R IERLY G+++I L+ NP +LPVILK LKQK +E + + + NK+W KN+
Sbjct: 1297 RSIERLYNNKGMEIITALYNNPLVSLPVILKRLKQKDQEWRKAKREWNKVWKDTTEKNYY 1356
Query: 353 KLQEMQR-ELKNSKREDLVAK 372
+ + Q K S ++ L K
Sbjct: 1357 RSLDYQSTSFKQSDKKTLTPK 1377
Score = 93 (37.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A FL++++ +F KQ I+ +F ++ D ID + V ELFKGH LI +N
Sbjct: 418 AFYFLEQVKMQFSKQ-PRIYNQFLDIMKDLKAHNIDTPVVIARVIELFKGHKHLISGFNT 476
Query: 107 FV 108
F+
Sbjct: 477 FL 478
Score = 69 (29.3 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 50 FLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFV 108
++K+++ RF Q D ++ F ++L ++ + +V +LF+ H DL+ ++ F+
Sbjct: 631 YVKKIKNRFINQPD-VYRHFLEILHNYHNEPQTIKDVYDQVADLFRAHPDLLSEFTQFL 688
Score = 37 (18.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 52 KEMRKRFRKQHD 63
KE +KRF K+ D
Sbjct: 991 KEKKKRFSKKSD 1002
>ZFIN|ZDB-GENE-070620-3 [details] [associations]
symbol:sin3aa "SIN3 homolog A, transcription
regulator (yeast) a" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
ZFIN:ZDB-GENE-070620-3 GO:GO:0005634 GO:GO:0006355
Gene3D:1.20.1160.11 SUPFAM:SSF47762 eggNOG:COG5602 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 HOVERGEN:HBG060425
OMA:PNQNGCQ OrthoDB:EOG48KR9G GeneTree:ENSGT00390000007239
HOGENOM:HOG000230688 EMBL:CU207224 EMBL:BC139856 IPI:IPI00484779
RefSeq:NP_001091650.1 UniGene:Dr.79679 SMR:A5D6S0 STRING:A5D6S0
Ensembl:ENSDART00000083539 GeneID:563090 KEGG:dre:563090 CTD:563090
NextBio:20884735 Uniprot:A5D6S0
Length = 1276
Score = 296 (109.3 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 70/218 (32%), Positives = 121/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y +P + R+ I +VLND V + +E S+F ++T+
Sbjct: 548 EIDYASCKRLGSSYRALPKSYQLPKCTGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTQ 607
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E K+ + +++ +K ++ LG S+
Sbjct: 608 YEEHMYRCEDERFELDVVLETNLATIRVLETTQKKLSRMSAEEQ--AKFRLDNTLGGFSE 665
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + I+R+Y + D+ID L KNP ++P++LK LK K EE E + NKIW
Sbjct: 666 IIHRKAIQRIYGDKAPDIIDGLKKNPAASVPIVLKRLKLKEEEWREAQRGFNKIWREQNE 725
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 726 KYY--LKSLDHQGINFKQNDTKVLRSKTLLNEIESIFD 761
Score = 95 (38.5 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGNQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q + I+ F ++L + K + + G EV +L
Sbjct: 310 AINYVNKIKNRFQGQPN-IYKSFLEILHKYQKEQRNAKEAGGSYTPVLTEQEVYAEVAQL 368
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 369 FKNQEDLLSEFGQFL 383
Score = 42 (19.8 bits), Expect = 9.2e-34, Sum P(3) = 9.2e-34
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 374 EKLQKEEEMNLDVGGNKQ 391
E+ +EE+M LD G +K+
Sbjct: 839 EEEDEEEDMELDEGASKK 856
>ZFIN|ZDB-GENE-030131-8264 [details] [associations]
symbol:sin3b "SIN3 homolog B, transcription
regulator (yeast)" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 ZFIN:ZDB-GENE-030131-8264 GO:GO:0005634
GO:GO:0006355 EMBL:BX004884 Gene3D:1.20.1160.11 SUPFAM:SSF47762
eggNOG:COG5602 InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
HOVERGEN:HBG060425 GeneTree:ENSGT00390000007239 CTD:23309
HOGENOM:HOG000230688 OMA:DVYSLFF OrthoDB:EOG4ZGPBH EMBL:BC171496
EMBL:BC171498 IPI:IPI00501556 RefSeq:NP_001038410.1
UniGene:Dr.74013 SMR:Q1LYM8 STRING:Q1LYM8
Ensembl:ENSDART00000090371 GeneID:560837 KEGG:dre:560837
InParanoid:Q1LYM8 NextBio:20883638 Uniprot:Q1LYM8
Length = 1196
Score = 310 (114.2 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 82/264 (31%), Positives = 136/264 (51%)
Query: 134 ELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQD---------LDLSKCKQVSP 184
EL V G + +LY +F+ ++ +E HVI + D +D + CK++
Sbjct: 386 ELLQLVTPFLG-KFPELYTQFKSFLGD-KELSHVISGLSDRYMEGGGREVDYASCKRLGS 443
Query: 185 SYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDR 244
SY LP+ Y P S R+ I +VLND V + +E S+F ++T EE L +CED+R
Sbjct: 444 SYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDER 503
Query: 245 FELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEH 302
FELD++L + +E + K+ + +D++ +++ + G + R + R+Y +
Sbjct: 504 FELDVVLETNLATIRVLESVQKKLSRLSLEDQERFRLDDCLGGTSEVIQRRAVYRIYGDK 563
Query: 303 GLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELK 362
++I+ L ++P TA+PV+LK LK K EE E + NKIW K + L+ + +
Sbjct: 564 APEIIEGLKRSPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAY--LKSLDHQGV 621
Query: 363 NSKREDLVAKEEK-LQKEEEMNLD 385
N K+ D+ A K L E E D
Sbjct: 622 NFKQNDMKALRSKSLLNEIESIYD 645
Score = 95 (38.5 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ RF GI+ +F ++ +F ID + V +LF GH DL+ +N
Sbjct: 41 ALSYLDQVKIRFGND-PGIYNKFLDIMKEFKSQSIDTPGVINRVSQLFHGHPDLVLGFNA 99
Query: 107 FV 108
F+
Sbjct: 100 FL 101
Score = 53 (23.7 bits), Expect = 5.7e-29, Sum P(2) = 5.7e-29
Identities = 16/76 (21%), Positives = 40/76 (52%)
Query: 46 AAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID-RDSLGL------------EVKE 92
+A++++ +++ RF + + F ++L + K +++ ++S G +V
Sbjct: 208 SAISYVNKIKNRFLDNPE-TYRAFLEILHTYQKEQLEVKESRGRSTGGMTEDEVFSKVAS 266
Query: 93 LFKGHDDLIHKYNVFV 108
LFKG +DL+ ++ F+
Sbjct: 267 LFKGQEDLLAEFGQFL 282
>UNIPROTKB|F1PH07 [details] [associations]
symbol:SIN3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0006355 Gene3D:1.20.1160.11 SUPFAM:SSF47762
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 EMBL:AAEX03016328 EMBL:AAEX03016329
Ensembl:ENSCAFT00000028626 Uniprot:F1PH07
Length = 959
Score = 300 (110.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 495 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 554
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 555 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 612
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 613 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 672
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 673 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 708
Score = 95 (38.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
>UNIPROTKB|F1SJ69 [details] [associations]
symbol:SIN3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071333 "cellular response to glucose stimulus"
evidence=IEA] [GO:0051595 "response to methylglyoxal" evidence=IEA]
[GO:0051329 "interphase of mitotic cell cycle" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0016580 "Sin3 complex" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 GO:GO:0017053 GO:GO:0043066 GO:GO:0000776
GO:GO:0034613 GO:GO:0071333 GO:GO:0003677 GO:GO:0006260
GO:GO:0001701 GO:GO:0003700 GO:GO:0003682 GO:GO:0005667
GO:GO:0051595 GO:GO:0001106 GO:GO:0016580 Gene3D:1.20.1160.11
SUPFAM:SSF47762 GO:GO:0051329 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 OMA:PNQNGCQ GeneTree:ENSGT00390000007239
EMBL:CU467588 Ensembl:ENSSSCT00000002105 Uniprot:F1SJ69
Length = 1227
Score = 300 (110.7 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 499 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 558
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 559 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 616
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 617 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 676
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 677 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 712
Score = 95 (38.5 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 70 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 124
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 125 FKGHPDLIMGFNTFL 139
Score = 55 (24.4 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 260 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 318
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 319 FKNQEDLLSEFGQFL 333
>UNIPROTKB|E1BX21 [details] [associations]
symbol:SIN3A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001106 "RNA polymerase II transcription corepressor
activity" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016580 "Sin3 complex" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0034613
"cellular protein localization" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0051329
"interphase of mitotic cell cycle" evidence=IEA] [GO:0051595
"response to methylglyoxal" evidence=IEA] [GO:0071333 "cellular
response to glucose stimulus" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] [GO:0001103 "RNA polymerase II
repressing transcription factor binding" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0017053
GO:GO:0043066 GO:GO:0000776 GO:GO:0034613 GO:GO:0071333
GO:GO:0003677 GO:GO:0006260 GO:GO:0003700 GO:GO:0003682
GO:GO:0005667 GO:GO:0051595 GO:GO:0001106 GO:GO:0016580
Gene3D:1.20.1160.11 SUPFAM:SSF47762 GO:GO:0051329
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 OMA:PNQNGCQ
GeneTree:ENSGT00390000007239 EMBL:AADN02074787 EMBL:AADN02074788
EMBL:AADN02074789 IPI:IPI00598520 Ensembl:ENSGALT00000002511
Uniprot:E1BX21
Length = 1269
Score = 301 (111.0 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 541 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 600
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 601 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 658
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 659 VIHRKALQRIYADKAADIIDGLRKNPSVAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 718
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 719 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 754
Score = 94 (38.1 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ +F Q ++ F ++ +F ID + V +LFKGH DLI +N
Sbjct: 121 ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNT 179
Query: 107 FV 108
F+
Sbjct: 180 FL 181
Score = 55 (24.4 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 302 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 360
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 361 FKNQEDLLSEFGQFL 375
>UNIPROTKB|Q96ST3 [details] [associations]
symbol:SIN3A "Paired amphipathic helix protein Sin3a"
species:9606 "Homo sapiens" [GO:0007568 "aging" evidence=IEA]
[GO:0010243 "response to organic nitrogen" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0034613
"cellular protein localization" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043619
"regulation of transcription from RNA polymerase II promoter in
response to oxidative stress" evidence=IEA] [GO:0051329 "interphase
of mitotic cell cycle" evidence=IEA] [GO:0051595 "response to
methylglyoxal" evidence=IEA] [GO:0071333 "cellular response to
glucose stimulus" evidence=IEA] [GO:0000776 "kinetochore"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0001106 "RNA
polymerase II transcription corepressor activity" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003714
"transcription corepressor activity" evidence=RCA] [GO:0016580
"Sin3 complex" evidence=NAS;IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007596 "blood coagulation" evidence=TAS]
[GO:0044255 "cellular lipid metabolic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0001102 "RNA polymerase
II activating transcription factor binding" evidence=IPI]
[GO:0033558 "protein deacetylase activity" evidence=IMP]
[GO:0006476 "protein deacetylation" evidence=IMP] [GO:1900181
"negative regulation of protein localization to nucleus"
evidence=IMP] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=IMP] [GO:1901675 "negative
regulation of histone H3-K27 acetylation" evidence=IMP] [GO:0031937
"positive regulation of chromatin silencing" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IMP]
[GO:0002218 "activation of innate immune response" evidence=IMP]
Reactome:REACT_604 Reactome:REACT_111217 InterPro:IPR003822
Pfam:PF02671 PROSITE:PS51477 GO:GO:0017053
Pathway_Interaction_DB:telomerasepathway GO:GO:0043066
GO:GO:0005730 GO:GO:0000776 GO:GO:0034613 GO:GO:0044281
GO:GO:0071333 GO:GO:0003677 GO:GO:0007596 GO:GO:0006260
GO:GO:0007568 GO:GO:0001701 GO:GO:0045944 GO:GO:0003700
GO:GO:0044255 GO:GO:0003682 GO:GO:0002230 GO:GO:0005667
GO:GO:0000122 GO:GO:0010243 GO:GO:0002218
Pathway_Interaction_DB:hedgehog_glipathway
Pathway_Interaction_DB:smad2_3nuclearpathway
Pathway_Interaction_DB:hdac_classi_pathway GO:GO:0051595
GO:GO:0001106 GO:GO:0043619 GO:GO:0016580 GO:GO:0031937
GO:GO:2000678 Gene3D:1.20.1160.11 SUPFAM:SSF47762 GO:GO:0033558
PDB:1PO4 PDBsum:1PO4 GO:GO:0051329 eggNOG:COG5602 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 EMBL:AF418569
EMBL:BC018973 EMBL:BC137098 EMBL:BC137099 EMBL:AK027559
EMBL:AK074903 EMBL:AK096477 EMBL:AY044430 EMBL:AL117513
IPI:IPI00170596 PIR:T17282 RefSeq:NP_001138829.1
RefSeq:NP_001138830.1 RefSeq:NP_056292.1 UniGene:Hs.513039
ProteinModelPortal:Q96ST3 SMR:Q96ST3 IntAct:Q96ST3
MINT:MINT-2815493 STRING:Q96ST3 PhosphoSite:Q96ST3 DMDM:37999759
PaxDb:Q96ST3 PeptideAtlas:Q96ST3 PRIDE:Q96ST3
Ensembl:ENST00000360439 Ensembl:ENST00000394947
Ensembl:ENST00000394949 GeneID:25942 KEGG:hsa:25942 UCSC:uc002bai.3
CTD:25942 GeneCards:GC15M075661 H-InvDB:HIX0012443
H-InvDB:HIX0019634 H-InvDB:HIX0172841 HGNC:HGNC:19353 HPA:CAB004506
MIM:607776 neXtProt:NX_Q96ST3 PharmGKB:PA134993567
HOVERGEN:HBG060425 InParanoid:Q96ST3 OMA:PNQNGCQ OrthoDB:EOG48KR9G
PhylomeDB:Q96ST3 ChiTaRS:SIN3A GenomeRNAi:25942 NextBio:47516
Bgee:Q96ST3 CleanEx:HS_SIN3A Genevestigator:Q96ST3
GermOnline:ENSG00000169375 GO:GO:1901675 GO:GO:1900181
Uniprot:Q96ST3
Length = 1273
Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 545 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 604
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 605 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 662
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 663 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 722
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 723 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 758
Score = 95 (38.5 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 307 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 365
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 366 FKNQEDLLSEFGQFL 380
>UNIPROTKB|F1MTR3 [details] [associations]
symbol:SIN3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071333 "cellular response to glucose stimulus"
evidence=IEA] [GO:0051595 "response to methylglyoxal" evidence=IEA]
[GO:0051329 "interphase of mitotic cell cycle" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0016580 "Sin3 complex" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 GO:GO:0017053 GO:GO:0043066 GO:GO:0000776
GO:GO:0034613 GO:GO:0071333 GO:GO:0003677 GO:GO:0006260
GO:GO:0001701 GO:GO:0003700 GO:GO:0003682 GO:GO:0005667
GO:GO:0051595 GO:GO:0001106 GO:GO:0016580 Gene3D:1.20.1160.11
SUPFAM:SSF47762 GO:GO:0051329 KO:K11644 InterPro:IPR013194
Pfam:PF08295 SMART:SM00761 CTD:25942 OMA:PNQNGCQ
GeneTree:ENSGT00390000007239 EMBL:DAAA02052491 IPI:IPI01028188
RefSeq:XP_002696677.1 RefSeq:XP_003583795.1 RefSeq:XP_003587608.1
RefSeq:XP_880544.4 Ensembl:ENSBTAT00000013167 GeneID:518504
KEGG:bta:518504 NextBio:20872670 Uniprot:F1MTR3
Length = 1274
Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 723
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 724 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 759
Score = 95 (38.5 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 307 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 365
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 366 FKNQEDLLSEFGQFL 380
>UNIPROTKB|J9P8L1 [details] [associations]
symbol:SIN3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0006355 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 CTD:25942 OMA:PNQNGCQ
GeneTree:ENSGT00390000007239 EMBL:AAEX03016328 EMBL:AAEX03016329
RefSeq:XP_535546.4 Ensembl:ENSCAFT00000045591 GeneID:478372
KEGG:cfa:478372 Uniprot:J9P8L1
Length = 1274
Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 723
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 724 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 759
Score = 95 (38.5 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 307 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 365
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 366 FKNQEDLLSEFGQFL 380
>MGI|MGI:107157 [details] [associations]
symbol:Sin3a "transcriptional regulator, SIN3A (yeast)"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IGI]
[GO:0000776 "kinetochore" evidence=IDA] [GO:0000785 "chromatin"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=ISO] [GO:0001103 "RNA
polymerase II repressing transcription factor binding"
evidence=IPI] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IGI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0002218 "activation of innate immune
response" evidence=ISO] [GO:0002230 "positive regulation of defense
response to virus by host" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0003714 "transcription corepressor
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0006476 "protein deacetylation"
evidence=ISO] [GO:0007568 "aging" evidence=ISO] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0010243 "response
to organic nitrogen" evidence=ISO] [GO:0010971 "positive regulation
of G2/M transition of mitotic cell cycle" evidence=IMP] [GO:0016580
"Sin3 complex" evidence=ISO] [GO:0017053 "transcriptional repressor
complex" evidence=IDA;IPI] [GO:0031937 "positive regulation of
chromatin silencing" evidence=ISO] [GO:0032403 "protein complex
binding" evidence=ISO] [GO:0033558 "protein deacetylase activity"
evidence=ISO] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=ISO] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051595 "response to
methylglyoxal" evidence=IDA] [GO:0071333 "cellular response to
glucose stimulus" evidence=IDA] [GO:1900181 "negative regulation of
protein localization to nucleus" evidence=ISO] [GO:1901675
"negative regulation of histone H3-K27 acetylation" evidence=ISO]
[GO:2000678 "negative regulation of transcription regulatory region
DNA binding" evidence=ISO] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 MGI:MGI:107157 GO:GO:0017053 GO:GO:0043066
GO:GO:0005730 GO:GO:0000776 GO:GO:0034613 GO:GO:0071333
GO:GO:0003677 GO:GO:0006260 GO:GO:0007568 GO:GO:0001701
GO:GO:0003700 GO:GO:0003682 GO:GO:0005667 GO:GO:0010243
GO:GO:0051595 GO:GO:0001106 GO:GO:0043619 GO:GO:0016580
Gene3D:1.20.1160.11 SUPFAM:SSF47762 PDB:1S5R PDBsum:1S5R
GO:GO:0051329 PDB:1G1E PDB:1S5Q PDBsum:1G1E PDBsum:1S5Q PDB:2L9S
PDBsum:2L9S eggNOG:COG5602 KO:K11644 InterPro:IPR013194
Pfam:PF08295 SMART:SM00761 PDB:2RMS PDBsum:2RMS PDB:2LD7
PDBsum:2LD7 CTD:25942 HOVERGEN:HBG060425 OMA:PNQNGCQ
OrthoDB:EOG48KR9G EMBL:L36831 EMBL:U22394 EMBL:AK220292
EMBL:BC052716 EMBL:BC053385 EMBL:L38620 EMBL:L38621 IPI:IPI00276051
IPI:IPI00985713 PIR:A56068 PIR:I61713 RefSeq:NP_001103820.1
RefSeq:NP_001103821.1 RefSeq:NP_035508.2 UniGene:Mm.15755 PDB:2RMR
PDBsum:2RMR ProteinModelPortal:Q60520 SMR:Q60520 DIP:DIP-469N
IntAct:Q60520 MINT:MINT-1510506 STRING:Q60520 PhosphoSite:Q60520
PaxDb:Q60520 PRIDE:Q60520 Ensembl:ENSMUST00000049169
Ensembl:ENSMUST00000167715 Ensembl:ENSMUST00000168177
Ensembl:ENSMUST00000168502 Ensembl:ENSMUST00000168678 GeneID:20466
KEGG:mmu:20466 UCSC:uc009ptx.2 UCSC:uc012gtw.1
GeneTree:ENSGT00390000007239 InParanoid:Q570Z7
EvolutionaryTrace:Q60520 NextBio:298567 Bgee:Q60520
CleanEx:MM_SIN3A Genevestigator:Q60520
GermOnline:ENSMUSG00000042557 Uniprot:Q60520
Length = 1274
Score = 300 (110.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 723
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 724 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 759
Score = 95 (38.5 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 307 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 365
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 366 FKNQEDLLSEFGQFL 380
>RGD|1311598 [details] [associations]
symbol:Sin3a "SIN3 transcription regulator homolog A (yeast)"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000776 "kinetochore" evidence=IEA;ISO] [GO:0000785 "chromatin"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=ISO] [GO:0001103 "RNA
polymerase II repressing transcription factor binding"
evidence=IEA;ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IEA;ISO] [GO:0001701 "in utero
embryonic development" evidence=IEA;ISO] [GO:0002218 "activation of
innate immune response" evidence=ISO] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISO]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA;ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0006476 "protein deacetylation" evidence=ISO]
[GO:0007568 "aging" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0010243 "response to organic nitrogen"
evidence=IDA] [GO:0016580 "Sin3 complex" evidence=IEA;ISO]
[GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO]
[GO:0031937 "positive regulation of chromatin silencing"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=IDA]
[GO:0033558 "protein deacetylase activity" evidence=ISO]
[GO:0034613 "cellular protein localization" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051329 "interphase of
mitotic cell cycle" evidence=IEA;ISO] [GO:0051595 "response to
methylglyoxal" evidence=IEA;ISO] [GO:0071333 "cellular response to
glucose stimulus" evidence=IEA;ISO] [GO:1900181 "negative
regulation of protein localization to nucleus" evidence=ISO]
[GO:1901675 "negative regulation of histone H3-K27 acetylation"
evidence=ISO] [GO:2000678 "negative regulation of transcription
regulatory region DNA binding" evidence=ISO] InterPro:IPR003822
Pfam:PF02671 PROSITE:PS51477 RGD:1311598 GO:GO:0017053
GO:GO:0043066 GO:GO:0043234 GO:GO:0000776 GO:GO:0034613
GO:GO:0032403 GO:GO:0071333 GO:GO:0003677 GO:GO:0006260
GO:GO:0007568 GO:GO:0001701 GO:GO:0000785 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0010243 GO:GO:0051595
GO:GO:0001106 GO:GO:0043619 GO:GO:0016580 Gene3D:1.20.1160.11
SUPFAM:SSF47762 GO:GO:0051329 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 OrthoDB:EOG48KR9G IPI:IPI00190130
Ensembl:ENSRNOT00000041686 UCSC:RGD:1311598 ArrayExpress:D3ZIN2
Uniprot:D3ZIN2
Length = 1282
Score = 300 (110.7 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 69/218 (31%), Positives = 122/218 (55%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG-ISD 291
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG S+
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663
Query: 292 L---RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNE 723
Query: 349 KNHDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
K + L+ + + N K+ D V + + L E E D
Sbjct: 724 KYY--LKSLDHQGINFKQNDTKVLRSKSLLNEIESIYD 759
Score = 95 (38.5 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 117 QFQRLKVED----ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 171
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 172 FKGHPDLIMGFNTFL 186
Score = 55 (24.4 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q D I+ F ++L + K + + G +V L
Sbjct: 307 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL 365
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 366 FKNQEDLLSEFGQFL 380
>FB|FBgn0022764 [details] [associations]
symbol:Sin3A "Sin3A" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS;IDA;NAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEP;IMP;TAS] [GO:0007422 "peripheral
nervous system development" evidence=TAS] [GO:0000785 "chromatin"
evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IMP] [GO:0003712 "transcription cofactor activity"
evidence=NAS] [GO:0016580 "Sin3 complex" evidence=NAS] [GO:0000791
"euchromatin" evidence=TAS] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0048666 "neuron development" evidence=IMP] [GO:0070822
"Sin3-type complex" evidence=IDA] [GO:0017053 "transcriptional
repressor complex" evidence=IDA] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0035206 "regulation of hemocyte proliferation"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
EMBL:AE013599 GO:GO:0007346 GO:GO:0017053 GO:GO:0045892
GO:GO:0007422 GO:GO:0048813 GO:GO:0007517 GO:GO:0005700
GO:GO:0035206 GO:GO:0016580 GO:GO:0000791 Gene3D:1.20.1160.11
SUPFAM:SSF47762 KO:K11644 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 CTD:25942 ChiTaRS:SIN3A GeneTree:ENSGT00390000007239
UniGene:Dm.4374 GeneID:36382 KEGG:dme:Dmel_CG8815
FlyBase:FBgn0022764 GenomeRNAi:36382 NextBio:798235 EMBL:BT016112
RefSeq:NP_001188912.1 RefSeq:NP_725187.1 RefSeq:NP_725188.1
SMR:Q5U0Y0 IntAct:Q5U0Y0 STRING:Q5U0Y0 EnsemblMetazoa:FBtr0087887
EnsemblMetazoa:FBtr0087890 EnsemblMetazoa:FBtr0303565
UCSC:CG8815-RB InParanoid:Q5U0Y0 Uniprot:Q5U0Y0
Length = 2062
Score = 281 (104.0 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
Identities = 74/211 (35%), Positives = 113/211 (53%)
Query: 171 IQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAST-GTERSSFKQRR 229
+QD+DLS CK++ SY LP+ S R+ + +VLND V T +E S+F R
Sbjct: 1025 VQDVDLSSCKRLGASYCALPQSTVPKKCSGRTALCREVLNDKWVSFPTWASEDSTFVTSR 1084
Query: 230 RTKQEEVLFKCEDDRFELDLLLGWMHSAAENV-EKLMIKIDDQNQDDEKSSKIEIEGHLG 288
+T+ EE +++ ED+RFELDL++ ++SA V E L K+ E+ SK ++ HLG
Sbjct: 1085 KTQFEETIYRTEDERFELDLVIE-VNSATIRVLENLQKKMS--RMSTEELSKFHLDDHLG 1141
Query: 289 ISDL----RCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWA 344
+ R I R+Y + ++I + KNP A+P++LK LK K EE E + NK W
Sbjct: 1142 GTSQTIHQRAIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWREAQKTFNKQWR 1201
Query: 345 HVCAKNHDKLQEMQRELKNSKREDLVAKEEK 375
K + L+ + + N K D+ A K
Sbjct: 1202 EQNEKYY--LKSLDHQAINFKPNDMKALRSK 1230
Score = 87 (35.7 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ ++ Q I+ F ++ +F ID + V LFKGH +LI+ +N+
Sbjct: 275 ALSYLDQVKYQYADQPQ-IYNNFLDIMKEFKSHCIDTPGVIERVSTLFKGHTELIYGFNM 333
Query: 107 FV 108
F+
Sbjct: 334 FL 335
Score = 56 (24.8 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 134 ELKTEVAKLFGDEHGDLYEEFERYV 158
E+ T+VAKLFG + DL EF +++
Sbjct: 622 EVYTQVAKLFGQDE-DLLREFGQFL 645
Score = 47 (21.6 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 16/75 (21%), Positives = 39/75 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKS-KIDRD-SLG-----------LEVKEL 93
A+ ++ +++ RF+ Q + +F ++L D+ + K+ ++ SL +V +L
Sbjct: 572 AITYVNKIKNRFQNQ-PAKYKKFLEILHDYQREQKVMKEGSLNQGKMLTEQEVYTQVAKL 630
Query: 94 FKGHDDLIHKYNVFV 108
F +DL+ ++ F+
Sbjct: 631 FGQDEDLLREFGQFL 645
>UNIPROTKB|F1NMJ8 [details] [associations]
symbol:SIN3B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000805 "X chromosome" evidence=IEA] [GO:0000806 "Y
chromosome" evidence=IEA] [GO:0001741 "XY body" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003714
"transcription corepressor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0030849 "autosome" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0048738 "cardiac muscle tissue development" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0003682
GO:GO:0001741 GO:GO:0000805 GO:GO:0000806 Gene3D:1.20.1160.11
SUPFAM:SSF47762 GO:GO:0030849 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 GeneTree:ENSGT00390000007239 OMA:DVYSLFF
EMBL:AADN02061989 EMBL:AADN02061988 EMBL:AADN02061985
EMBL:AADN02061986 EMBL:AADN02061983 EMBL:AADN02061984
EMBL:AADN02061987 EMBL:AADN02061990 EMBL:AADN02061991
IPI:IPI00600088 Ensembl:ENSGALT00000005982 Uniprot:F1NMJ8
Length = 1078
Score = 313 (115.2 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 74/217 (34%), Positives = 118/217 (54%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 343 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 402
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ Q+D++ +++ + G +
Sbjct: 403 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRLTQEDQEKFRLDDCLGGTSEV 462
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
R I R+Y + ++I++L KNP TA+PV+LK LK K EE E + NKIW K
Sbjct: 463 IQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEK 522
Query: 350 NHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNLD 385
+ L+ + + N K+ D A K L E E D
Sbjct: 523 AY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYD 557
Score = 72 (30.4 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 48 VAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVF 107
+++L +++ RF + F +++ +F ID + V +LF H DLI +N F
Sbjct: 1 LSYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAF 59
Query: 108 V 108
+
Sbjct: 60 L 60
Score = 67 (28.6 bits), Expect = 6.7e-31, Sum P(2) = 6.7e-31
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K +++ R G+ EV LF+G
Sbjct: 121 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLNTKGRPFRGMSEEEVFTEVANLFRG 179
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 180 QEDLLSEFGQFL 191
>UNIPROTKB|J9NXS4 [details] [associations]
symbol:SIN3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0006355 Gene3D:1.20.1160.11 SUPFAM:SSF47762
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 EMBL:AAEX03012305
Ensembl:ENSCAFT00000049746 Uniprot:J9NXS4
Length = 1127
Score = 309 (113.8 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 73/217 (33%), Positives = 117/217 (53%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 389 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 448
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ +D++ +++ + G +
Sbjct: 449 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEV 508
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
R I R+Y + ++I++L KNP TA+PV+LK LK K EE E + NKIW K
Sbjct: 509 IQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEK 568
Query: 350 NHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNLD 385
+ L+ + + N K+ D A K L E E D
Sbjct: 569 AY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYD 603
Score = 75 (31.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 46 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 104
Query: 107 FV 108
F+
Sbjct: 105 FL 106
Score = 66 (28.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K ++ R G+ EV LF+G
Sbjct: 167 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRG 225
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 226 QEDLLSEFGQFL 237
>UNIPROTKB|F1S9U7 [details] [associations]
symbol:SIN3B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003714
"transcription corepressor activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001741 "XY body"
evidence=IEA] [GO:0000806 "Y chromosome" evidence=IEA] [GO:0000805
"X chromosome" evidence=IEA] [GO:0048738 "cardiac muscle tissue
development" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030849 "autosome"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0003682
GO:GO:0048738 GO:GO:0001741 GO:GO:0007519 GO:GO:0000805
GO:GO:0000806 Gene3D:1.20.1160.11 SUPFAM:SSF47762 GO:GO:0030849
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 OMA:DVYSLFF EMBL:CU915550
Ensembl:ENSSSCT00000015147 Uniprot:F1S9U7
Length = 1141
Score = 309 (113.8 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 73/217 (33%), Positives = 117/217 (53%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 403 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 462
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ +D++ +++ + G +
Sbjct: 463 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEV 522
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
R I R+Y + ++I++L KNP TA+PV+LK LK K EE E + NKIW K
Sbjct: 523 IQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEK 582
Query: 350 NHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNLD 385
+ L+ + + N K+ D A K L E E D
Sbjct: 583 AY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYD 617
Score = 75 (31.5 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 40 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 98
Query: 107 FV 108
F+
Sbjct: 99 FL 100
Score = 66 (28.3 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K ++ R G+ EV LF+G
Sbjct: 181 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRG 239
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 240 QEDLLSEFGQFL 251
>UNIPROTKB|E1BGW5 [details] [associations]
symbol:LOC520505 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0048738 "cardiac muscle tissue development"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030849 "autosome" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001741 "XY body" evidence=IEA] [GO:0000806 "Y chromosome"
evidence=IEA] [GO:0000805 "X chromosome" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0003682
GO:GO:0048738 GO:GO:0001741 GO:GO:0007519 GO:GO:0000805
GO:GO:0000806 Gene3D:1.20.1160.11 SUPFAM:SSF47762 GO:GO:0030849
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 OMA:DVYSLFF EMBL:DAAA02019084
IPI:IPI00690642 Ensembl:ENSBTAT00000036414 Uniprot:E1BGW5
Length = 1144
Score = 309 (113.8 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 73/217 (33%), Positives = 117/217 (53%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 405 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 464
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ +D++ +++ + G +
Sbjct: 465 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEV 524
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
R I R+Y + ++I++L KNP TA+PV+LK LK K EE E + NKIW K
Sbjct: 525 IQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEK 584
Query: 350 NHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNLD 385
+ L+ + + N K+ D A K L E E D
Sbjct: 585 AY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYD 619
Score = 75 (31.5 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 40 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 98
Query: 107 FV 108
F+
Sbjct: 99 FL 100
Score = 66 (28.3 bits), Expect = 2.7e-30, Sum P(2) = 2.7e-30
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K ++ R G+ EV LF+G
Sbjct: 183 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRG 241
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 242 QEDLLSEFGQFL 253
>MGI|MGI:107158 [details] [associations]
symbol:Sin3b "transcriptional regulator, SIN3B (yeast)"
species:10090 "Mus musculus" [GO:0000805 "X chromosome"
evidence=IDA] [GO:0000806 "Y chromosome" evidence=IDA] [GO:0001741
"XY body" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IDA] [GO:0030849 "autosome" evidence=IDA]
[GO:0045786 "negative regulation of cell cycle" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0048738 "cardiac muscle tissue development"
evidence=IDA] InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
MGI:MGI:107158 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0006351 GO:GO:0003682 GO:GO:0048738
GO:GO:0045786 GO:GO:0001741 GO:GO:0007519 GO:GO:0000805
GO:GO:0000806 Gene3D:1.20.1160.11 SUPFAM:SSF47762 GO:GO:0030849
PDB:1E91 PDB:1PD7 PDBsum:1E91 PDBsum:1PD7 eggNOG:COG5602
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 PDB:2CZY PDBsum:2CZY
HOVERGEN:HBG060425 GeneTree:ENSGT00390000007239 CTD:23309
HOGENOM:HOG000230688 OMA:DVYSLFF OrthoDB:EOG4ZGPBH EMBL:L38622
EMBL:AF038848 EMBL:AK173005 EMBL:BC020049 EMBL:BC021160
IPI:IPI00121971 IPI:IPI00124066 IPI:IPI00338793 IPI:IPI00608092
PIR:I61714 RefSeq:NP_001106719.1 RefSeq:NP_033214.2 UniGene:Mm.2137
PDB:2CR7 PDB:2F05 PDBsum:2CR7 PDBsum:2F05 ProteinModelPortal:Q62141
SMR:Q62141 DIP:DIP-470N IntAct:Q62141 STRING:Q62141
PhosphoSite:Q62141 PaxDb:Q62141 PRIDE:Q62141
Ensembl:ENSMUST00000004494 Ensembl:ENSMUST00000109950 GeneID:20467
KEGG:mmu:20467 UCSC:uc009mgp.2 UCSC:uc009mgq.3 InParanoid:Q62141
EvolutionaryTrace:Q62141 NextBio:298571 Bgee:Q62141
CleanEx:MM_SIN3B Genevestigator:Q62141
GermOnline:ENSMUSG00000031622 Uniprot:Q62141
Length = 1098
Score = 308 (113.5 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 73/217 (33%), Positives = 117/217 (53%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 378 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 437
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ +D++ +++ + G +
Sbjct: 438 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEV 497
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
R I R+Y + +VI++L +NP TA+PV+LK LK K EE E + NKIW K
Sbjct: 498 IQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEK 557
Query: 350 NHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNLD 385
+ L+ + + N K+ D A K L E E D
Sbjct: 558 AY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVYD 592
Score = 75 (31.5 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 37 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 95
Query: 107 FV 108
F+
Sbjct: 96 FL 97
Score = 65 (27.9 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K ++ R G+ EV LF+G
Sbjct: 157 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG 215
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 216 QEDLLSEFGQFL 227
>ZFIN|ZDB-GENE-030131-2066 [details] [associations]
symbol:sin3ab "SIN3 homolog A, transcription
regulator (yeast) b" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 ZFIN:ZDB-GENE-030131-2066 GO:GO:0005634
GO:GO:0006355 Gene3D:1.20.1160.11 SUPFAM:SSF47762
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 EMBL:BX663612 IPI:IPI00802882
Ensembl:ENSDART00000083555 Uniprot:E7F0R9
Length = 1264
Score = 280 (103.6 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 65/216 (30%), Positives = 117/216 (54%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ + P + R+ + +VLND V + +E S+F ++T+
Sbjct: 541 EIDYASCKRLGSSYRALPKSFQQPRCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 600
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGIS 290
EE +++CED+RFELD++L + +E + +I + +++ +++ I G +
Sbjct: 601 YEEHIYRCEDERFELDVVLETNLATIRVLEAVQKRISRMSAEEQAKFRLDNTIGGSSEVI 660
Query: 291 DLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN 350
+ I+R+Y + D+ID L NP ++P++LK LK K EE E + NKIW K
Sbjct: 661 HRKAIQRIYGDKAPDIIDGLKTNPAVSVPIVLKRLKIKEEEWREAQRGFNKIWREQNEKY 720
Query: 351 HDKLQEMQRELKNSKREDL-VAKEEKLQKEEEMNLD 385
+ L+ + + N K+ D V + + L E E D
Sbjct: 721 Y--LKSLDHQGINFKQNDTKVFRSKTLLNEIETLYD 754
Score = 95 (38.5 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 34 QFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKEL 93
QF+ + D A+++L +++ +F Q ++ F ++ +F ID + V +L
Sbjct: 111 QFQRLKVED----ALSYLDQVKLQFGNQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQL 165
Query: 94 FKGHDDLIHKYNVFV 108
FKGH DLI +N F+
Sbjct: 166 FKGHPDLIMGFNTFL 180
Score = 52 (23.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/75 (20%), Positives = 37/75 (49%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLG-------------LEVKEL 93
A+ ++ +++ RF+ Q + ++ F ++L + K + + G +V +L
Sbjct: 304 AINYVNKIKNRFQGQPE-VYKSFLEILHTYQKEQRNAKEAGGNYTPTLTEQQVYAQVAQL 362
Query: 94 FKGHDDLIHKYNVFV 108
FK +DL+ ++ F+
Sbjct: 363 FKNQEDLLSEFGQFL 377
>UNIPROTKB|F1PN34 [details] [associations]
symbol:SIN3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005634
GO:GO:0006355 Gene3D:1.20.1160.11 SUPFAM:SSF47762
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 OMA:DVYSLFF EMBL:AAEX03012305
Ensembl:ENSCAFT00000024754 Uniprot:F1PN34
Length = 1156
Score = 248 (92.4 bits), Expect = 6.3e-26, Sum P(3) = 6.3e-26
Identities = 62/182 (34%), Positives = 97/182 (53%)
Query: 207 QVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMI 266
QVLND V + +E S+F ++T EE L +CED+RFELD++L + +E +
Sbjct: 453 QVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQK 512
Query: 267 KIDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKS 324
K+ +D++ +++ + G + R I R+Y + ++I++L KNP TA+PV+LK
Sbjct: 513 KLSRMAPEDQEKFRLDDCLGGTSEVIQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKR 572
Query: 325 LKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMN 383
LK K EE E + NKIW K + L+ + + N K+ D A K L E E
Sbjct: 573 LKAKEEEWREAQQGFNKIWREQYEKAY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESV 630
Query: 384 LD 385
D
Sbjct: 631 YD 632
Score = 75 (31.5 bits), Expect = 6.3e-26, Sum P(3) = 6.3e-26
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 44 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 102
Query: 107 FV 108
F+
Sbjct: 103 FL 104
Score = 71 (30.1 bits), Expect = 6.3e-26, Sum P(3) = 6.3e-26
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVL 209
+++D + CK++ SY LP+ Y P S R+ I +V+
Sbjct: 387 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVV 424
Score = 66 (28.3 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K ++ R G+ EV LF+G
Sbjct: 165 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRG 223
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 224 QEDLLSEFGQFL 235
>UNIPROTKB|O75182 [details] [associations]
symbol:SIN3B "Paired amphipathic helix protein Sin3b"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000805 "X chromosome"
evidence=IEA] [GO:0000806 "Y chromosome" evidence=IEA] [GO:0001741
"XY body" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0007519
"skeletal muscle tissue development" evidence=IEA] [GO:0030849
"autosome" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048738 "cardiac
muscle tissue development" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 GO:GO:0005737
GO:GO:0003714 GO:GO:0045892
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0044281 GO:GO:0044255 GO:GO:0006351 GO:GO:0003682
GO:GO:0048738 EMBL:CH471106
Pathway_Interaction_DB:hedgehog_glipathway
Pathway_Interaction_DB:smad2_3nuclearpathway
Pathway_Interaction_DB:hdac_classi_pathway GO:GO:0001741
GO:GO:0007519 GO:GO:0000805 GO:GO:0000806 Gene3D:1.20.1160.11
SUPFAM:SSF47762 GO:GO:0030849 eggNOG:COG5602 InterPro:IPR013194
Pfam:PF08295 SMART:SM00761 HOVERGEN:HBG060425 EMBL:AY706204
EMBL:AB014600 EMBL:BC005113 EMBL:BC025026 EMBL:BC063531
EMBL:BC110821 IPI:IPI00464980 IPI:IPI00607589 IPI:IPI00607724
RefSeq:NP_056075.1 UniGene:Hs.13999 ProteinModelPortal:O75182
SMR:O75182 IntAct:O75182 STRING:O75182 PhosphoSite:O75182
PaxDb:O75182 PRIDE:O75182 DNASU:23309 Ensembl:ENST00000248054
Ensembl:ENST00000379803 GeneID:23309 KEGG:hsa:23309 UCSC:uc002new.3
UCSC:uc002ney.2 UCSC:uc002nez.2 CTD:23309 GeneCards:GC19P016940
HGNC:HGNC:19354 HPA:HPA050329 MIM:607777 neXtProt:NX_O75182
PharmGKB:PA134909030 HOGENOM:HOG000230688 InParanoid:O75182
OMA:DVYSLFF OrthoDB:EOG4ZGPBH GenomeRNAi:23309 NextBio:45174
Bgee:O75182 CleanEx:HS_SIN3B Genevestigator:O75182
GermOnline:ENSG00000127511 Uniprot:O75182
Length = 1162
Score = 241 (89.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 61/181 (33%), Positives = 96/181 (53%)
Query: 208 VLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIK 267
VLND V + +E S+F ++T EE L +CED+RFELD++L + +E + K
Sbjct: 455 VLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKK 514
Query: 268 IDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSL 325
+ +D++ +++ + G + R I R+Y + ++I++L KNP TA+PV+LK L
Sbjct: 515 LSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRL 574
Query: 326 KQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEK-LQKEEEMNL 384
K K EE E + NKIW K + L+ + + N K+ D A K L E E
Sbjct: 575 KAKEEEWREAQQGFNKIWREQYEKAY--LKSLDHQAVNFKQNDTKALRSKSLLNEIESVY 632
Query: 385 D 385
D
Sbjct: 633 D 633
Score = 75 (31.5 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 44 ALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 102
Query: 107 FV 108
F+
Sbjct: 103 FL 104
Score = 68 (29.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEI 204
+++D + CK++ SY LP+ Y P S R+ I
Sbjct: 387 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAI 419
Score = 67 (28.6 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKID---RDSLGL-------EVKELFKG 96
A++++ +++ RF H I+ F ++L + K +++ R G+ EV LF+G
Sbjct: 165 AISYVNKIKTRFL-DHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRG 223
Query: 97 HDDLIHKYNVFV 108
+DL+ ++ F+
Sbjct: 224 QEDLLSEFGQFL 235
>SGD|S000005364 [details] [associations]
symbol:SIN3 "Component of the Sin3p-Rpd3p histone deacetylase
complex" species:4932 "Saccharomyces cerevisiae" [GO:0070210
"Rpd3L-Expanded complex" evidence=IDA] [GO:0033698 "Rpd3L complex"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0032221 "Rpd3S complex"
evidence=IDA] [GO:0061186 "negative regulation of chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0061188
"negative regulation of chromatin silencing at rDNA" evidence=IMP]
[GO:0031939 "negative regulation of chromatin silencing at
telomere" evidence=IMP] [GO:0016479 "negative regulation of
transcription from RNA polymerase I promoter" evidence=IMP]
[GO:0000117 "regulation of transcription involved in G2/M-phase of
mitotic cell cycle" evidence=IGI] [GO:0016575 "histone
deacetylation" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0051301 "cell division"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0070822 "Sin3-type complex"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IMP;IPI] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003713 "transcription coactivator activity"
evidence=IMP] [GO:0061408 "positive regulation of transcription
from RNA polymerase II promoter in response to heat stress"
evidence=IMP] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=IMP] [GO:0051038 "negative
regulation of transcription during meiosis" evidence=IMP]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477 SGD:S000005364
GO:GO:0003714 EMBL:BK006948 GO:GO:0051301 GO:GO:0006351
GO:GO:0000122 GO:GO:0003713 GO:GO:0061408 GO:GO:0033698
GO:GO:0070210 GO:GO:0006303 GO:GO:0000117 GO:GO:0016575
GO:GO:0051038 GO:GO:0030174 GO:GO:0032221 GO:GO:0061188
GO:GO:0061186 GO:GO:0031939 Gene3D:1.20.1160.11 SUPFAM:SSF47762
GO:GO:0016479 eggNOG:COG5602 KO:K11644 OMA:NDEWASH
OrthoDB:EOG4X3M8D InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 EMBL:M36822 EMBL:Z74746 PIR:S66686
RefSeq:NP_014639.1 ProteinModelPortal:P22579 SMR:P22579
DIP:DIP-597N IntAct:P22579 MINT:MINT-422975 STRING:P22579
PaxDb:P22579 PeptideAtlas:P22579 EnsemblFungi:YOL004W GeneID:854158
KEGG:sce:YOL004W CYGD:YOL004w HOGENOM:HOG000248545 NextBio:975926
Genevestigator:P22579 GermOnline:YOL004W Uniprot:P22579
Length = 1536
Score = 255 (94.8 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 69/229 (30%), Positives = 119/229 (51%)
Query: 151 YEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEY-YWMPLASNRSEIGDQVL 209
++ F Y K + ++++ LDL C+ PSY RLP+ +MP S R ++ +VL
Sbjct: 720 FKNFVGYQEKTKCIENIVHEKHRLDLDLCEAFGPSYKRLPKSDTFMP-CSGRDDMCWEVL 778
Query: 210 NDNLVCAST-GTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKI 268
ND V +E S F R+ + EE LFK E++R E D + + +E ++ KI
Sbjct: 779 NDEWVGHPVWASEDSGFIAHRKNQYEETLFKIEEERHEYDFYIESNLRTIQCLETIVNKI 838
Query: 269 DDQNQDDEKSSKIEIE-GHLGISDLR-CIERLY-AEHGLDVIDNLHKNPETALPVILKSL 325
++ ++++ + K+ GH ++ + I ++Y E G ++ID LH++P PV+LK L
Sbjct: 839 ENMTENEKANFKLPPGLGHTSMTIYKKVIRKVYDKERGFEIIDALHEHPAVTAPVVLKRL 898
Query: 326 KQKVEELVERRSDCNKIWAHVCAKNHDK-LQEMQRELKNSKREDLVAKE 373
KQK EE + + NK+W + K K L + K + ++ L K+
Sbjct: 899 KQKDEEWRRAQREWNKVWRELEQKVFFKSLDHLGLTFKQADKKLLTTKQ 947
Score = 82 (33.9 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L++++ +F + D I+ F ++ DF ID + V LF+G+ LI +N
Sbjct: 224 ALSYLEQVKFQFSSRPD-IYNLFLDIMKDFKSQAIDTPGVIERVSTLFRGYPILIQGFNT 282
Query: 107 FV 108
F+
Sbjct: 283 FL 284
Score = 69 (29.3 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A++++ +++ RF Q D I+ F ++L + + + + + +V LF+ DL+ +
Sbjct: 411 AISYVNKIKTRFADQPD-IYKHFLEILQTYQREQKPINEVYAQVTHLFQNAPDLLEDFKK 469
Query: 107 FV 108
F+
Sbjct: 470 FL 471
>POMBASE|SPBC12C2.10c [details] [associations]
symbol:pst1 "Clr6 histone deacetylase complex subunit
Pst1" species:4896 "Schizosaccharomyces pombe" [GO:0003714
"transcription corepressor activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0016575 "histone
deacetylation" evidence=IGI] [GO:0030261 "chromosome condensation"
evidence=IMP] [GO:0030702 "chromatin silencing at centromere"
evidence=IMP] [GO:0032221 "Rpd3S complex" evidence=IDA] [GO:0033698
"Rpd3L complex" evidence=IDA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 PomBase:SPBC12C2.10c GO:GO:0003714 GO:GO:0051301
EMBL:CU329671 GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0006338
GO:GO:0007049 GO:GO:0030702 GO:GO:0005721 GO:GO:0030261
GO:GO:0033698 GO:GO:0016575 GO:GO:0032221 Gene3D:1.20.1160.11
SUPFAM:SSF47762 EMBL:AF280407 PIR:T39371 RefSeq:NP_596012.2
ProteinModelPortal:Q09750 SMR:Q09750 DIP:DIP-29340N IntAct:Q09750
STRING:Q09750 EnsemblFungi:SPBC12C2.10c.1 GeneID:2540018
KEGG:spo:SPBC12C2.10c eggNOG:COG5602 KO:K11644 OMA:NDEWASH
OrthoDB:EOG4X3M8D NextBio:20801161 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 Uniprot:Q09750
Length = 1522
Score = 215 (80.7 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 62/227 (27%), Positives = 114/227 (50%)
Query: 174 LDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAST-GTERSSFKQRRRTK 232
+DL++CK PSY LP+ + S R ++ +LND V T +E S F R+ +
Sbjct: 588 VDLTQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDAWVSFPTLASEDSGFIAHRKNQ 647
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDE-KSSKIEIEGHLGISD 291
EE L K E++R+E D +G + +E L I D + E + + + +LG
Sbjct: 648 FEENLHKLEEERYEYDRHIG---ANMRFIELLQIHADKMLKMSEVEKANWTLPSNLGGKS 704
Query: 292 L----RCIERLYA-EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHV 346
+ + I+++Y EH +I+NL KNP +P++L+ LK+K E ++ N++W +
Sbjct: 705 VSIYHKVIKKVYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDI 764
Query: 347 CAKN------HDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVG 387
KN H + + K++ + L+++ L +++++ L G
Sbjct: 765 EEKNFYRSLDHQGVSFKSVDKKSTTPKFLISELRNLAQQQKVELSEG 811
Score = 74 (31.1 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L ++ +F ++ + I+ F ++ +F I+ + V +LF G+ +LI +N
Sbjct: 185 ALSYLDLVKLQFHQEPE-IYNEFLDIMKEFKSQAIETPEVITRVSKLFAGYPNLIQGFNT 243
Query: 107 FV 108
F+
Sbjct: 244 FL 245
Score = 52 (23.4 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 41 ADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDL 100
ADL A+ F+ ++ RF + + + F +L + + + +V +LF DL
Sbjct: 347 ADL-DQAINFVNNVKNRFSHKPEA-YNSFLDILKSYQHDQRPIQLVYFQVSQLFAEAPDL 404
Query: 101 IHKYNVFV 108
+ ++ F+
Sbjct: 405 LEEFKRFL 412
Score = 45 (20.9 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 138 EVAKLFGDEHGDLYEEFERYV 158
+V++LF E DL EEF+R++
Sbjct: 393 QVSQLFA-EAPDLLEEFKRFL 412
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 133 PELKTEVAKLFGDEHGDLYEEFERYV 158
PE+ T V+KLF + +L + F ++
Sbjct: 221 PEVITRVSKLFAG-YPNLIQGFNTFL 245
>ASPGD|ASPL0000051511 [details] [associations]
symbol:AN1546 species:162425 "Emericella nidulans"
[GO:0032221 "Rpd3S complex" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0033698 "Rpd3L complex"
evidence=IEA] [GO:0070210 "Rpd3L-Expanded complex" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0061408 "positive regulation of transcription from RNA
polymerase II promoter in response to heat stress" evidence=IEA]
[GO:0061186 "negative regulation of chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0030261 "chromosome
condensation" evidence=IEA] [GO:0030174 "regulation of
DNA-dependent DNA replication initiation" evidence=IEA] [GO:0030702
"chromatin silencing at centromere" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0061188 "negative regulation of
chromatin silencing at rDNA" evidence=IEA] [GO:0031939 "negative
regulation of chromatin silencing at telomere" evidence=IEA]
[GO:0000117 "regulation of transcription involved in G2/M-phase of
mitotic cell cycle" evidence=IEA] [GO:0016479 "negative regulation
of transcription from RNA polymerase I promoter" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0051038 "negative regulation of transcription
during meiosis" evidence=IEA] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 GO:GO:0005634 GO:GO:0006355 EMBL:BN001307
EMBL:AACD01000025 Gene3D:1.20.1160.11 SUPFAM:SSF47762
eggNOG:COG5602 KO:K11644 OMA:NDEWASH OrthoDB:EOG4X3M8D
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 RefSeq:XP_659150.1
ProteinModelPortal:Q5BD34 SMR:Q5BD34 STRING:Q5BD34
EnsemblFungi:CADANIAT00008174 GeneID:2874883 KEGG:ani:AN1546.2
HOGENOM:HOG000158405 Uniprot:Q5BD34
Length = 1605
Score = 178 (67.7 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 68/255 (26%), Positives = 120/255 (47%)
Query: 149 DLYEEFERYV-AKCREQKHV-IKSIQD---LDLSKCKQVSPSYWRLPEYYWMPLASNRSE 203
+L F+R++ + E K V +K Q+ ++LS C+ + PSY LP+ S R E
Sbjct: 793 ELMAWFKRFMHVEEPEDKIVEVKPKQEPGIVNLSHCRSLGPSYRLLPKRERQKPCSGRDE 852
Query: 204 IGDQVLNDNLVCAST-GTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVE 262
+ VLND T +E S F R+ + E+ L + E+DR + D + + + +E
Sbjct: 853 LCRSVLNDEWASHPTWASEDSGFVAHRKNQYEDALHRIEEDRHDYDHHIEACNRTIQLIE 912
Query: 263 KLMIKIDDQNQDDEKSSKIEIEGHLGISDL---RCIERLY-AEHGLDVIDNLHKNPETAL 318
++ + + + + ++ G G S+ R I+++Y + G +I + + P L
Sbjct: 913 PIVQQFLVMTEAERAAFQLP-RGLGGQSEAIYQRVIKKIYDRQRGERIIKEMFERPCHVL 971
Query: 319 PVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEMQR-ELKNSKREDLVAK----E 373
P++L LKQK EE + + +KIW K + + + Q K ++ VAK E
Sbjct: 972 PIVLFRLKQKCEEWKASQREWDKIWREQMQKAYWRSLDHQAIASKGVDKKLFVAKHIQTE 1031
Query: 374 EKLQKEEEMNLDVGG 388
+ + EE NL G
Sbjct: 1032 IQAKHEESKNLRKSG 1046
Score = 99 (39.9 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ RF Q D ++ RF ++ DF ID + V LF GH LI +N
Sbjct: 278 ALSYLDQVKVRFVDQPD-VYNRFLDIMKDFKSQAIDTPGVIQRVSNLFNGHPALIQGFNT 336
Query: 107 FV 108
F+
Sbjct: 337 FL 338
Score = 63 (27.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 28 LNGVYSQFRAFALADL-RGA-----AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI 81
L GV S + ADL RG A++++ +++ RF + + I+ +F ++L + +
Sbjct: 508 LAGVGSGVLQGSQADLKRGPVEFNHAISYVNKIKNRFSSRPE-IYKQFLEILQTYQRESK 566
Query: 82 DRDSLGLEVKELFKGHDDLIHKYNVFV 108
+ +V +LF DL+ + F+
Sbjct: 567 PIGDVYTQVTQLFNSAPDLLEDFKQFL 593
>UNIPROTKB|O01319 [details] [associations]
symbol:sin-3 "Protein SIN-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0016575 "histone deacetylation"
evidence=IDA] InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
GO:GO:0005634 GO:GO:0001708 GO:GO:0016246 GO:GO:0006355
GO:GO:0040011 GO:GO:0006974 GO:GO:0045138 GO:GO:0040025
GO:GO:0040027 GO:GO:0016575 Gene3D:1.20.1160.11 SUPFAM:SSF47762
EMBL:Z81494 KO:K11644 InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 UniGene:Cel.18986 GeneID:172628
KEGG:cel:CELE_F02E9.4 UCSC:F02E9.4b CTD:172628 NextBio:876327
PIR:T20513 RefSeq:NP_492284.2 ProteinModelPortal:O01319 SMR:O01319
STRING:O01319 EnsemblMetazoa:F02E9.4a WormBase:F02E9.4a
ArrayExpress:O01319 Uniprot:O01319
Length = 1505
Score = 180 (68.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 61/235 (25%), Positives = 112/235 (47%)
Query: 162 REQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ---VLNDNLVCA-S 217
R+QK +++ +++++ + + PSY R + S R E+ D VLND S
Sbjct: 782 RDQK-MLQQVKNVEAATVCTLGPSY-RFMKDTKATDCSGRVELDDDLKGVLNDTWTSIPS 839
Query: 218 TGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEK 277
+E + + +++ EE FK ED+R+ELD+++ + E + K + + + +D+K
Sbjct: 840 WSSEDTGSQAIKKSNLEEFHFKTEDERYELDIIVDSNRTVIEQLSKTLRDYEAMSDEDKK 899
Query: 278 SSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVER 335
S K++ + + +R + +++ D ID KNP L IL+SLK+K + L R
Sbjct: 900 SFKLDKWLNASSRSTTIRVLAKVFTNSAQDFIDAAQKNPLVGLRRILESLKEK-DLLWSR 958
Query: 336 -RSDCNKIWAHVCAKNHDKL------QEMQRELKNSKREDLVAKEEKLQKEEEMN 383
+ D N+ W K Q + K K + LV + E++ +E N
Sbjct: 959 FQQDTNRTWRDALDKQMSAATTILNNQHKNYDQKAFKSKPLVNQIEQICEERRKN 1013
Score = 68 (29.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A+L+ ++ F ++ RF +++ DF +I+ + +V EL +L+ +N
Sbjct: 289 ALAYLRVIKSTFSSDVP-VYHRFLEIMKDFRAQRIETPDVIEQVAELLYDSPELVLGFNT 347
Query: 107 FV 108
F+
Sbjct: 348 FL 349
>WB|WBGene00004117 [details] [associations]
symbol:sin-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0045138 "tail tip
morphogenesis" evidence=IGI;IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0004407 "histone deacetylase activity" evidence=IDA]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003822 Pfam:PF02671
PROSITE:PS51477 GO:GO:0005634 GO:GO:0001708 GO:GO:0016246
GO:GO:0006355 GO:GO:0040011 GO:GO:0006974 GO:GO:0045138
GO:GO:0040025 GO:GO:0040027 GO:GO:0016575 Gene3D:1.20.1160.11
SUPFAM:SSF47762 EMBL:Z81494 eggNOG:COG5602 KO:K11644
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761
GeneTree:ENSGT00390000007239 RefSeq:NP_001122442.1
UniGene:Cel.18986 ProteinModelPortal:A5JYW9 SMR:A5JYW9
IntAct:A5JYW9 STRING:A5JYW9 PaxDb:A5JYW9 EnsemblMetazoa:F02E9.4b
GeneID:172628 KEGG:cel:CELE_F02E9.4 UCSC:F02E9.4b CTD:172628
WormBase:F02E9.4b InParanoid:A5JYW9 OMA:ILMEWLC NextBio:876327
ArrayExpress:A5JYW9 Uniprot:A5JYW9
Length = 1507
Score = 180 (68.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 61/235 (25%), Positives = 112/235 (47%)
Query: 162 REQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ---VLNDNLVCA-S 217
R+QK +++ +++++ + + PSY R + S R E+ D VLND S
Sbjct: 782 RDQK-MLQQVKNVEAATVCTLGPSY-RFMKDTKATDCSGRVELDDDLKGVLNDTWTSIPS 839
Query: 218 TGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEK 277
+E + + +++ EE FK ED+R+ELD+++ + E + K + + + +D+K
Sbjct: 840 WSSEDTGSQAIKKSNLEEFHFKTEDERYELDIIVDSNRTVIEQLSKTLRDYEAMSDEDKK 899
Query: 278 SSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVER 335
S K++ + + +R + +++ D ID KNP L IL+SLK+K + L R
Sbjct: 900 SFKLDKWLNASSRSTTIRVLAKVFTNSAQDFIDAAQKNPLVGLRRILESLKEK-DLLWSR 958
Query: 336 -RSDCNKIWAHVCAKNHDKL------QEMQRELKNSKREDLVAKEEKLQKEEEMN 383
+ D N+ W K Q + K K + LV + E++ +E N
Sbjct: 959 FQQDTNRTWRDALDKQMSAATTILNNQHKNYDQKAFKSKPLVNQIEQICEERRKN 1013
Score = 68 (29.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A+L+ ++ F ++ RF +++ DF +I+ + +V EL +L+ +N
Sbjct: 289 ALAYLRVIKSTFSSDVP-VYHRFLEIMKDFRAQRIETPDVIEQVAELLYDSPELVLGFNT 347
Query: 107 FV 108
F+
Sbjct: 348 FL 349
>UNIPROTKB|A5JYW9 [details] [associations]
symbol:sin-3 "Protein SIN-3, isoform b" species:6239
"Caenorhabditis elegans" [GO:0016575 "histone deacetylation"
evidence=IDA] InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
GO:GO:0005634 GO:GO:0001708 GO:GO:0016246 GO:GO:0006355
GO:GO:0040011 GO:GO:0006974 GO:GO:0045138 GO:GO:0040025
GO:GO:0040027 GO:GO:0016575 Gene3D:1.20.1160.11 SUPFAM:SSF47762
EMBL:Z81494 eggNOG:COG5602 KO:K11644 InterPro:IPR013194
Pfam:PF08295 SMART:SM00761 GeneTree:ENSGT00390000007239
RefSeq:NP_001122442.1 UniGene:Cel.18986 ProteinModelPortal:A5JYW9
SMR:A5JYW9 IntAct:A5JYW9 STRING:A5JYW9 PaxDb:A5JYW9
EnsemblMetazoa:F02E9.4b GeneID:172628 KEGG:cel:CELE_F02E9.4
UCSC:F02E9.4b CTD:172628 WormBase:F02E9.4b InParanoid:A5JYW9
OMA:ILMEWLC NextBio:876327 ArrayExpress:A5JYW9 Uniprot:A5JYW9
Length = 1507
Score = 180 (68.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 61/235 (25%), Positives = 112/235 (47%)
Query: 162 REQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ---VLNDNLVCA-S 217
R+QK +++ +++++ + + PSY R + S R E+ D VLND S
Sbjct: 782 RDQK-MLQQVKNVEAATVCTLGPSY-RFMKDTKATDCSGRVELDDDLKGVLNDTWTSIPS 839
Query: 218 TGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEK 277
+E + + +++ EE FK ED+R+ELD+++ + E + K + + + +D+K
Sbjct: 840 WSSEDTGSQAIKKSNLEEFHFKTEDERYELDIIVDSNRTVIEQLSKTLRDYEAMSDEDKK 899
Query: 278 SSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVER 335
S K++ + + +R + +++ D ID KNP L IL+SLK+K + L R
Sbjct: 900 SFKLDKWLNASSRSTTIRVLAKVFTNSAQDFIDAAQKNPLVGLRRILESLKEK-DLLWSR 958
Query: 336 -RSDCNKIWAHVCAKNHDKL------QEMQRELKNSKREDLVAKEEKLQKEEEMN 383
+ D N+ W K Q + K K + LV + E++ +E N
Sbjct: 959 FQQDTNRTWRDALDKQMSAATTILNNQHKNYDQKAFKSKPLVNQIEQICEERRKN 1013
Score = 68 (29.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A+L+ ++ F ++ RF +++ DF +I+ + +V EL +L+ +N
Sbjct: 289 ALAYLRVIKSTFSSDVP-VYHRFLEIMKDFRAQRIETPDVIEQVAELLYDSPELVLGFNT 347
Query: 107 FV 108
F+
Sbjct: 348 FL 349
>POMBASE|SPAC23C11.15 [details] [associations]
symbol:pst2 "Clr6 histone deacetylase complex subunit
Pst2" species:4896 "Schizosaccharomyces pombe" [GO:0003714
"transcription corepressor activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IC] [GO:0006342
"chromatin silencing" evidence=ISO] [GO:0016575 "histone
deacetylation" evidence=IMP] [GO:0030261 "chromosome condensation"
evidence=IMP] [GO:0032221 "Rpd3S complex" evidence=IDA]
InterPro:IPR003822 Pfam:PF02671 PROSITE:PS51477
PomBase:SPAC23C11.15 GO:GO:0003714 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006351 GO:GO:0006338 GO:GO:0006342
GO:GO:0030261 GO:GO:0016575 GO:GO:0032221 Gene3D:1.20.1160.11
SUPFAM:SSF47762 eggNOG:COG5602 InterPro:IPR013194 Pfam:PF08295
SMART:SM00761 PIR:T38253 RefSeq:NP_593646.1
ProteinModelPortal:O13919 DIP:DIP-29341N IntAct:O13919
STRING:O13919 EnsemblFungi:SPAC23C11.15.1 GeneID:2541624
KEGG:spo:SPAC23C11.15 OMA:WITTANT OrthoDB:EOG454D8N
NextBio:20802717 Uniprot:O13919
Length = 1075
Score = 177 (67.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 57/226 (25%), Positives = 112/226 (49%)
Query: 170 SIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAST-GTERSSFKQR 228
S+ + S + PSY LP S R + +LND+ V T +E S F +
Sbjct: 325 SVYNSACSDFPECGPSYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIVQ 384
Query: 229 RRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG 288
R+T EE + K E++R+E D + ++++K+ +I++ +++ ++ +E EG LG
Sbjct: 385 RKTPYEEAMTKLEEERYEFDRHIEATSWTIKSLKKIQNRINELPEEERETYTLE-EG-LG 442
Query: 289 ISDL----RCIERLY-AEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
+ + I+ +Y +EH ++ L + P LP+++ L++K EE + W
Sbjct: 443 LPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLEEKNEEWKSVKRSLQPGW 502
Query: 344 AHVCAKNHDKLQEMQ------RELKNSKREDLVAKEEKLQKEEEMN 383
+ KN+DK + Q R+ KN + L+A+ + L+ + +++
Sbjct: 503 RSIEFKNYDKSLDSQCVYFKARDKKNVSSKFLLAEADILRSQAKLH 548
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ F+ +R+ + F + L F S+ L V L H L H+++
Sbjct: 145 AIGFVSRVRRALLSNPEQFF-KLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAHEFHN 203
Query: 107 FV 108
F+
Sbjct: 204 FL 205
>POMBASE|SPBC1734.16c [details] [associations]
symbol:pst3 "SIN3 family co-repressor Pst3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0006342 "chromatin silencing"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IC] [GO:0016575 "histone deacetylation"
evidence=IC] [GO:0032221 "Rpd3S complex" evidence=IDA] [GO:0070210
"Rpd3L-Expanded complex" evidence=IDA] InterPro:IPR003822
Pfam:PF02671 PROSITE:PS51477 PomBase:SPBC1734.16c GO:GO:0005829
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0006342
GO:GO:0070210 GO:GO:0006303 GO:GO:0016575 GO:GO:0032221
Gene3D:1.20.1160.11 SUPFAM:SSF47762 eggNOG:COG5602
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 PIR:T39663
RefSeq:NP_595433.1 ProteinModelPortal:O74755 SMR:O74755
STRING:O74755 EnsemblFungi:SPBC1734.16c.1 GeneID:2539793
KEGG:spo:SPBC1734.16c OMA:NILNICE OrthoDB:EOG4NGKXP
NextBio:20800942 Uniprot:O74755
Length = 1154
Score = 134 (52.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/170 (24%), Positives = 74/170 (43%)
Query: 182 VSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCE 241
+S +Y +LP+ + S R ++ + VLND+ + + + + L E
Sbjct: 496 ISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQALQLVE 555
Query: 242 DDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKI-EIEGHLGISDLRCIERLYA 300
D+R++ D +L SA K++ + + + + E+E I I
Sbjct: 556 DERYDYDRVLNTTESAI----KILANFCEPTIHEHLETALQELERSKRIIKNALIIVYGK 611
Query: 301 EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN 350
EH +D L K TA PV+LK +K K +E + + +KIW + KN
Sbjct: 612 EHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKREWSKIWRQIEKKN 661
Score = 85 (35.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGL--EVKELFKGHDDLIHKY 104
A+++L+ ++ F ++ + I+ RF +++ DF +D +LG+ V ELF G+ LI +
Sbjct: 118 ALSYLELVKYYFSERRE-IYNRFLEIMRDFKSQALD--TLGVINRVSELFNGYPQLIEGF 174
Query: 105 NVFV 108
N F+
Sbjct: 175 NTFL 178
Score = 69 (29.3 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A++ +++ R+ D ++ F +L + K++ + V E+FK DL+ ++ +
Sbjct: 259 AIAYMNKVKARYPPNSD-TYMEFLGVLRTYQKAQKSIFEVRARVAEIFKDSPDLLEEFKL 317
Query: 107 FV 108
F+
Sbjct: 318 FL 319
>TAIR|locus:2087203 [details] [associations]
symbol:AT3G24260 "AT3G24260" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP000382
InterPro:IPR013194 Pfam:PF08295 SMART:SM00761 IPI:IPI00533121
RefSeq:NP_189069.1 UniGene:At.65146 PRIDE:Q9LK19
EnsemblPlants:AT3G24260.1 GeneID:822014 KEGG:ath:AT3G24260
TAIR:At3g24260 eggNOG:NOG324637 HOGENOM:HOG000153034
InParanoid:Q9LK19 OMA:TELLMAT PhylomeDB:Q9LK19
ProtClustDB:CLSN2914811 Genevestigator:Q9LK19 Uniprot:Q9LK19
Length = 374
Score = 141 (54.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 50/161 (31%), Positives = 81/161 (50%)
Query: 178 KCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVL 237
K ++ +P+Y +P+ P++S VLN+ V S + Q+ T E+ +
Sbjct: 210 KTERATPNYKLIPKEEQTPVSST-------VLNNTWVVNSYDIQA----QKNLTDIEKDM 258
Query: 238 FKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIER 297
+ ED FELD+L+G++ SAA+N E+++ + E+ K LG RC E
Sbjct: 259 YNWEDQMFELDMLVGFLTSAAKNAEEVI--------NGERDLK-----DLGGKFYRCAEN 305
Query: 298 LYAEHGLDVIDNLHKNPETALPVILKSLKQKVEE--LVERR 336
LY G D+++ + +N + LP IL L QK+ E LV R
Sbjct: 306 LY---GRDMLEIVKENHQRVLPAILNRLNQKLREVTLVRER 343
>TAIR|locus:2090744 [details] [associations]
symbol:AT3G28870 "AT3G28870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 InterPro:IPR004179 SMART:SM00973
InterPro:IPR013194 Pfam:PF08295 IPI:IPI00541068 RefSeq:NP_189529.1
UniGene:At.53548 ProteinModelPortal:F4J0F5 SMR:F4J0F5
EnsemblPlants:AT3G28870.1 GeneID:822521 KEGG:ath:AT3G28870
ArrayExpress:F4J0F5 Uniprot:F4J0F5
Length = 355
Score = 133 (51.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 37/119 (31%), Positives = 63/119 (52%)
Query: 231 TKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGIS 290
T EE ++K ED+ FE+D+L+ + SA E+ +++ IK ++E++ LG
Sbjct: 146 TDIEEDMYKWEDEMFEVDMLMRVLTSAVESAKEV-IK-----------GEMELKD-LGAK 192
Query: 291 DLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAK 349
RC+E LY E D+ + + ++ + ALP+IL LKQK+ + R +W K
Sbjct: 193 FYRCVEMLYGE---DMFETVTEDHQRALPMILSRLKQKLRHVTTARERLKPLWKQTIEK 248
>TAIR|locus:2016024 [details] [associations]
symbol:AT1G27250 "AT1G27250" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] InterPro:IPR003822
Pfam:PF02671 PROSITE:PS51477 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 EMBL:AC000348
Gene3D:1.20.1160.11 SUPFAM:SSF47762 IPI:IPI00544484
RefSeq:NP_174044.1 UniGene:At.51785 ProteinModelPortal:O04572
SMR:O04572 PaxDb:O04572 PRIDE:O04572 EnsemblPlants:AT1G27250.1
GeneID:839613 KEGG:ath:AT1G27250 TAIR:At1g27250 eggNOG:NOG320258
HOGENOM:HOG000113937 InParanoid:O04572 OMA:GCIKEVE PhylomeDB:O04572
ProtClustDB:CLSN2682873 Genevestigator:O04572 Uniprot:O04572
Length = 137
Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A A+L+ +R +F + F ++++F +IDRD EV++L KGH DLI +N
Sbjct: 22 AYAYLRAVRAKFHNDSKK-YDDFVAVMTNFKARRIDRDGCIKEVEQLLKGHRDLISGFNA 80
Query: 107 FV 108
F+
Sbjct: 81 FL 82
>UNIPROTKB|J9P9H3 [details] [associations]
symbol:NEXN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051015 "actin filament binding"
evidence=IEA] [GO:0030334 "regulation of cell migration"
evidence=IEA] InterPro:IPR020678 GO:GO:0030334 InterPro:IPR020675
PANTHER:PTHR22964 PANTHER:PTHR22964:SF4
GeneTree:ENSGT00700000104480 EMBL:AAEX03004886 EMBL:AAEX03004887
Ensembl:ENSCAFT00000049295 Uniprot:J9P9H3
Length = 388
Score = 84 (34.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 34/123 (27%), Positives = 58/123 (47%)
Query: 133 PELKTEVAKLFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYW--RLP 190
P KT V KL G GD+ ++FE + + RE+++ +S + K + + W R
Sbjct: 17 PVPKTYVPKL-GK--GDVKDKFEA-MQRAREERNQRRSRDEKQRRKEQYIREREWNRRKQ 72
Query: 191 EYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDR---FEL 247
E M + + E+ +V V TGT + F + + +QEE + E++R E
Sbjct: 73 EIKEMLASDDEEEVSSKV-EKAYVPKLTGTVKGRFAEMEKQRQEEQRKRTEEERRRRIEQ 131
Query: 248 DLL 250
D+L
Sbjct: 132 DML 134
Score = 75 (31.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 34/155 (21%), Positives = 71/155 (45%)
Query: 229 RRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG 288
+R Q E+ + E + E+ L+ + A+ ++K ++ + ++ EK K E + +
Sbjct: 136 KRKIQRELAKRAEQQKTEIQLVPVKSYKASGKIKKNFEDLEKEREEKEKV-KYEEDKRIR 194
Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKS-LKQKVEELVERRSDCNKIWAHVC 347
+ R L L ++ + ET + LK EEL +R + + A
Sbjct: 195 YEEQR--RSLKEAKCLSLVMDDELESETKKESLSPGKLKLTFEELERQRQENRRRQAEEE 252
Query: 348 AKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEM 382
A+ +L+E +R + ++R+ V +EE+ Q E++
Sbjct: 253 ARQ--RLEEEKRAFEEARRQMKVNEEEENQDTEKI 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 391 358 0.00081 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 610 (65 KB)
Total size of DFA: 246 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.50u 0.10s 38.60t Elapsed: 00:00:02
Total cpu time: 38.51u 0.10s 38.61t Elapsed: 00:00:02
Start: Sat May 11 00:43:52 2013 End: Sat May 11 00:43:54 2013