BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016325
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis
thaliana GN=SNL1 PE=1 SV=2
Length = 1372
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 200/371 (53%), Gaps = 46/371 (12%)
Query: 40 LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
L + A F ++++ R Q D + F + L+ F+ I R L V +L D
Sbjct: 331 LKSMYKQAFVFCEKVKDRLCSQDD--YQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPD 388
Query: 100 LIHKYNVFV-RNEA-----------------DDEEDGAGGDSDHDDDDNHEPELKTEVAK 141
L+ ++N F R E+ EE + + + H+PEL
Sbjct: 389 LMDEFNQFFERCESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPEL------ 442
Query: 142 LFGDEHGDLYEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNR 201
E + +C+++ ++ KSIQ+LDLS C+ +PSY LP Y +P+AS R
Sbjct: 443 -----------EAVKETEQCKKE-YMGKSIQELDLSDCECCTPSYRLLPADYPIPIASQR 490
Query: 202 SEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENV 261
SE+G +VLND+ V ++G+E SFK RR + EE LF+CEDDRFELD+LL + SAA +
Sbjct: 491 SELGAEVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSA 550
Query: 262 EKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVI 321
E L+ I ++ S IE H +LRCIERLY +HGLDVID L+KNP TALPVI
Sbjct: 551 ESLLNIITEKKIS--FSGSFRIEDHFTALNLRCIERLYGDHGLDVIDILNKNPATALPVI 608
Query: 322 LKSLKQKVEELVERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAKEEK 375
L LKQK E + R D +K+WA+V AKNH K Q++ KN + L+A+ ++
Sbjct: 609 LTRLKQKQGEWKKCRDDFDKVWANVYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKE 668
Query: 376 LQKEEEMNLDV 386
L+++ + + DV
Sbjct: 669 LKEKSQNDDDV 679
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L+E+++ F+ Q + + RF +++ DF + D + VKELFKGH++LI+ +N
Sbjct: 58 ALSYLREVKEMFQDQREK-YDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNLIYGFNT 116
Query: 107 FV 108
F+
Sbjct: 117 FL 118
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ F+ +++ RF K + ++ F ++L+ + K + + EV LF+GH DL+ ++
Sbjct: 143 AINFVNKIKMRF-KHDEHVYKSFLEILNMYRKENKEIKEVYNEVSILFQGHLDLLEQFTR 201
Query: 107 FV 108
F+
Sbjct: 202 FL 203
>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis
thaliana GN=SNL4 PE=3 SV=3
Length = 1326
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 140/210 (66%), Gaps = 13/210 (6%)
Query: 152 EEFERYVAKCREQKHV---------IKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRS 202
E+ ERY + RE++ + K I +LDLS C+Q +PSY RLP+ Y +P+AS +
Sbjct: 405 EKIERYRERDREKERLEKVAASQKWAKPISELDLSNCEQCTPSYRRLPKNYPIPIASQKM 464
Query: 203 EIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVE 262
EIG QVLND+ V ++G+E SFK R+ + EE LFKCEDDRFELD+LL + SA VE
Sbjct: 465 EIGSQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFKCEDDRFELDMLLESVISATNRVE 524
Query: 263 KLMIKIDDQNQDDEKS-SKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVI 321
+L+ KI N ++ K+ + I IE HL +LRCIERLY++HGLDV+D L KN ALPVI
Sbjct: 525 ELLAKI---NSNELKTDTPICIEDHLTALNLRCIERLYSDHGLDVLDLLKKNAYLALPVI 581
Query: 322 LKSLKQKVEELVERRSDCNKIWAHVCAKNH 351
L LKQK EE R++ NK+WA + KN+
Sbjct: 582 LTRLKQKQEEWARCRTEFNKVWADIYTKNY 611
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A+LK ++ +F+ + D + F +++ DF ++D + L VKELFKG+ +LI +N
Sbjct: 15 ALAYLKAVKDKFQDKRDK-YDEFLEVMKDFKAQRVDTTGVILRVKELFKGNRELILGFNT 73
Query: 107 FV 108
F+
Sbjct: 74 FL 75
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis
thaliana GN=SNL3 PE=1 SV=3
Length = 1330
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
Query: 169 KSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQR 228
K I +LDLS C+Q +PSY LP+ Y + +AS ++EIG VLND+ V ++G+E SF
Sbjct: 417 KPISELDLSNCEQCTPSYRLLPKNYPISIASQKTEIGKLVLNDHWVSVTSGSEDYSFSHM 476
Query: 229 RRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG 288
R+ + EE LFKCEDDRFELD+LL ++S ++VE+L+ KI+ + + + +S I +E HL
Sbjct: 477 RKNQYEESLFKCEDDRFELDMLLESVNSTTKHVEELLTKIN--SNELKTNSPIRVEDHLT 534
Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCA 348
+LRCIERLY +HGLDV+D L KN ALPVIL LKQK EE RSD +K+WA + A
Sbjct: 535 ALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDKVWAEIYA 594
Query: 349 KNHDK 353
KN+ K
Sbjct: 595 KNYYK 599
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+A+LK ++ +F+ Q G + F +++ +F ++D + VKELFKGH +LI +N
Sbjct: 15 ALAYLKAVKDKFQDQR-GKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGHQELILGFNT 73
Query: 107 FV 108
F+
Sbjct: 74 FL 75
>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis
thaliana GN=SNL2 PE=1 SV=2
Length = 1367
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 196/365 (53%), Gaps = 27/365 (7%)
Query: 40 LADLRGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDD 99
L + A F +++++R Q D + F + L+ F+ I R L V ++ D
Sbjct: 327 LKSMYNQAFLFCEKVKERLCSQDD--YQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384
Query: 100 LIHKYNVFV-RNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYV 158
L+ ++N F R E+ D G + E +++ E D E +R V
Sbjct: 385 LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEE-----NLSRSVKGEEKD--REHKRDV 437
Query: 159 AKCREQ-----KHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNL 213
+E+ K++ KSIQ+LDLS C++ +PSY LP Y +P +R + G VLND+
Sbjct: 438 EAAKEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHW 497
Query: 214 VCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQ 273
V ++G+E SFK RR + EE LF+CEDDRFELD+LL + SAA++ E+L+ I D+
Sbjct: 498 VSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKI 557
Query: 274 DDEKSSKIEIEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELV 333
E S IE H +LRCIERLY +HGLDV D + KNP ALPVIL LKQK +E
Sbjct: 558 SFEGS--FRIEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWT 615
Query: 334 ERRSDCNKIWAHVCAKNHDK------LQEMQRELKNSKREDLVAK----EEKLQKEEEMN 383
+ R N +WA V AKNH K Q++ KN + LV++ +EK QKE+++
Sbjct: 616 KCREGFNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVV 675
Query: 384 LDVGG 388
L +
Sbjct: 676 LSISA 680
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +LKE+++ F+ Q D + F +++ DF K D + VKELFKGH++LI +N
Sbjct: 53 ALTYLKEVKEMFQDQRDK-YDMFLEVMKDFKAQKTDTSGVISRVKELFKGHNNLIFGFNT 111
Query: 107 FV 108
F+
Sbjct: 112 FL 113
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A++F+ +++ RF + ++ ++ F ++L+ + K D + EV LF+ H DL+ ++
Sbjct: 137 AISFVNKIKTRF-QHNELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTR 195
Query: 107 FV 108
F+
Sbjct: 196 FL 197
>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis
thaliana GN=SNL5 PE=2 SV=3
Length = 1162
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 136/212 (64%), Gaps = 8/212 (3%)
Query: 166 HVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSF 225
H+ K+I +LDL+ C Q +PSY RLP+ Y + + S R+ +G++VLND+ V ++G+E SF
Sbjct: 303 HMAKAINELDLTDCAQCTPSYRRLPDDYPIQIPSYRNSLGEKVLNDHWVSVTSGSEDYSF 362
Query: 226 KQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEG 285
K R+ + EE LF+CEDDRFELD+LL + +A + VE L+ KI++ E + I I
Sbjct: 363 KHMRKNQYEESLFRCEDDRFELDMLLESVSAAIKRVESLLEKINNNTISIE--TPICIRE 420
Query: 286 HLGISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAH 345
HL +LRCIERLY ++GLDV+D L KN ALPVIL LKQK EE R+D K+WA
Sbjct: 421 HLSELNLRCIERLYGDYGLDVMDFLKKNSHIALPVILTRLKQKQEEWARCRADFRKVWAE 480
Query: 346 VCAKNHDK------LQEMQRELKNSKREDLVA 371
V AKNH K Q++ KN + LVA
Sbjct: 481 VYAKNHHKSLDHRSFYFKQQDSKNLSTKGLVA 512
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +LK ++ F+ + + F ++ DF ++D + + VK+LFKG+DDL+ +N
Sbjct: 46 ALTYLKAVKDMFQDNKEK-YETFLGVMKDFKAQRVDTNGVIARVKDLFKGYDDLLLGFNT 104
Query: 107 FV 108
F+
Sbjct: 105 FL 106
>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis
thaliana GN=SNL6 PE=3 SV=2
Length = 1173
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 175/357 (49%), Gaps = 53/357 (14%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ F+ +++ RF + RF +L+ + K K + EV LFKGH+DL+ ++
Sbjct: 169 AIGFVTKIKTRFGDDEHA-YKRFLDILNLYRKEKKSISEVYEEVTMLFKGHEDLLMEFVN 227
Query: 107 FVRN---------EADDEEDGAGGDSDHDD-------------------DDNHEPELKTE 138
F+ N A G + H D +D E +
Sbjct: 228 FLPNCPESAPSTKNAVPRHKGTATTAMHSDKKRKQRCKLEDYSGHSDQREDGDENLVTCS 287
Query: 139 VAKLFGDEHGDLYEEFERYV-----AKCREQKHVIKSIQD-----------------LDL 176
G+ + ++E R +K QD LDL
Sbjct: 288 ADSPVGEGQPGYFRDYENREDTETDTADRTEKSAASGSQDIGNHKSTTKYVGTPINELDL 347
Query: 177 SKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEV 236
S+C Q +PSY LP+ Y + + S R+ +G + LND+LV ++G+E SF R+ + EE
Sbjct: 348 SECTQCTPSYRLLPKDYAVEIPSYRNTLGKKTLNDHLVSVTSGSEDYSFSHMRKNQYEES 407
Query: 237 LFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIE 296
LF+CEDDR+E+D+LLG + SA + VE L+ K++ N S I IE HL +LRCIE
Sbjct: 408 LFRCEDDRYEMDMLLGSVSSAIKQVEILLEKMN--NNTISVDSTICIEKHLSAMNLRCIE 465
Query: 297 RLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDK 353
RLY ++GLDV+D L KN +ALPVIL LKQK EE SD K+WA V AKNH K
Sbjct: 466 RLYGDNGLDVMDLLKKNMHSALPVILTRLKQKQEEWARCHSDFQKVWAEVYAKNHHK 522
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +LK ++ F + + F +L+ +F ID + + +K LFKG+ DL+ +N
Sbjct: 85 ALTYLKAVKDIFHDNKEK-YESFLELMKEFKAQTIDTNGVIERIKVLFKGYRDLLLGFNT 143
Query: 107 FV 108
F+
Sbjct: 144 FL 145
>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b
PE=1 SV=2
Length = 1098
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRT 231
+++D + CK++ SY LP+ Y P S R+ I +VLND V + +E S+F ++T
Sbjct: 378 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKT 437
Query: 232 KQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIE--IEGHLGI 289
EE L +CED+RFELD++L + +E + K+ +D++ +++ + G +
Sbjct: 438 PYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEV 497
Query: 290 SDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
R I R+Y + +VI++L +NP TA+PV+LK LK K EE E + NKIW
Sbjct: 498 IQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIW 551
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 37 ALTYLDQVKIRF-GSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 95
Query: 107 FV 108
F+
Sbjct: 96 FL 97
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a
PE=1 SV=3
Length = 1274
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 546 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 605
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG---- 288
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG
Sbjct: 606 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 663
Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 664 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVW 718
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ +F Q ++ F ++ +F ID + V +LFKGH DLI +N
Sbjct: 126 ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNT 184
Query: 107 FV 108
F+
Sbjct: 185 FL 186
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A
PE=1 SV=2
Length = 1273
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 173 DLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTK 232
++D + CK++ SY LP+ Y P + R+ + +VLND V + +E S+F ++T+
Sbjct: 545 EIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ 604
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLG---- 288
EE +++CED+RFELD++L + +E + K+ + +++ +K ++ LG
Sbjct: 605 YEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQ--AKFRLDNTLGGTSE 662
Query: 289 ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIW 343
+ + ++R+YA+ D+ID L KNP A+P++LK LK K EE E + NK+W
Sbjct: 663 VIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVW 717
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L +++ +F Q ++ F ++ +F ID + V +LFKGH DLI +N
Sbjct: 126 ALSYLDQVKLQFGSQPQ-VYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNT 184
Query: 107 FV 108
F+
Sbjct: 185 FL 186
>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B
PE=1 SV=2
Length = 1162
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 40/250 (16%)
Query: 172 QDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQ------------------------ 207
+++D + CK++ SY LP+ Y P S R+ I +
Sbjct: 387 REIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKELDHWTLLQGSWTDDYCMSKFKNTC 446
Query: 208 --------VLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAE 259
VLND V + +E S+F ++T EE L +CED+RFELD++L +
Sbjct: 447 WIPGYSAGVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIR 506
Query: 260 NVEKLMIKIDDQNQDDEKSSKIE--IEGHLGISDLRCIERLYAEHGLDVIDNLHKNPETA 317
+E + K+ +D++ +++ + G + R I R+Y + ++I++L KNP TA
Sbjct: 507 VLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTA 566
Query: 318 LPVILKSLKQKVEELVERRSDCNKIW------AHVCAKNHDKLQEMQRELKNSKREDLVA 371
+PV+LK LK K EE E + NKIW A++ + +H + Q + K + + L+
Sbjct: 567 VPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLN 626
Query: 372 KEEKLQKEEE 381
+ E + E +
Sbjct: 627 EIESVYDEHQ 636
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+ +L +++ RF + F +++ +F ID + V +LF H DLI +N
Sbjct: 44 ALTYLDQVKIRF-GSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA 102
Query: 107 FV 108
F+
Sbjct: 103 FL 104
>sp|P22579|SIN3_YEAST Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIN3 PE=1 SV=2
Length = 1536
Score = 91.7 bits (226), Expect = 9e-18, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 5/228 (2%)
Query: 151 YEEFERYVAKCREQKHVIKSIQDLDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLN 210
++ F Y K + ++++ LDL C+ PSY RLP+ S R ++ +VLN
Sbjct: 720 FKNFVGYQEKTKCIENIVHEKHRLDLDLCEAFGPSYKRLPKSDTFMPCSGRDDMCWEVLN 779
Query: 211 DNLVCAST-GTERSSFKQRRRTKQEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKID 269
D V +E S F R+ + EE LFK E++R E D + + +E ++ KI+
Sbjct: 780 DEWVGHPVWASEDSGFIAHRKNQYEETLFKIEEERHEYDFYIESNLRTIQCLETIVNKIE 839
Query: 270 DQNQDDEKSSKIEIE-GHLGISDLR-CIERLY-AEHGLDVIDNLHKNPETALPVILKSLK 326
+ ++++ + K+ GH ++ + I ++Y E G ++ID LH++P PV+LK LK
Sbjct: 840 NMTENEKANFKLPPGLGHTSMTIYKKVIRKVYDKERGFEIIDALHEHPAVTAPVVLKRLK 899
Query: 327 QKVEELVERRSDCNKIWAHVCAKNHDK-LQEMQRELKNSKREDLVAKE 373
QK EE + + NK+W + K K L + K + ++ L K+
Sbjct: 900 QKDEEWRRAQREWNKVWRELEQKVFFKSLDHLGLTFKQADKKLLTTKQ 947
Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L++++ +F + D I+ F ++ DF ID + V LF+G+ LI +N
Sbjct: 224 ALSYLEQVKFQFSSRPD-IYNLFLDIMKDFKSQAIDTPGVIERVSTLFRGYPILIQGFNT 282
Query: 107 FV 108
F+
Sbjct: 283 FL 284
>sp|Q09750|PST1_SCHPO Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst1 PE=1 SV=1
Length = 1522
Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 174 LDLSKCKQVSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCAST-GTERSSFKQRRRTK 232
+DL++CK PSY LP+ + S R ++ +LND V T +E S F R+ +
Sbjct: 588 VDLTQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDAWVSFPTLASEDSGFIAHRKNQ 647
Query: 233 QEEVLFKCEDDRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDE-KSSKIEIEGHLGISD 291
EE L K E++R+E D +G + +E L I D + E + + + +LG
Sbjct: 648 FEENLHKLEEERYEYDRHIG---ANMRFIELLQIHADKMLKMSEVEKANWTLPSNLGGKS 704
Query: 292 L----RCIERLYA-EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHV 346
+ + I+++Y EH +I+NL KNP +P++L+ LK+K E ++ N++W +
Sbjct: 705 VSIYHKVIKKVYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDI 764
Query: 347 CAKN------HDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVG 387
KN H + + K++ + L+++ L +++++ L G
Sbjct: 765 EEKNFYRSLDHQGVSFKSVDKKSTTPKFLISELRNLAQQQKVELSEG 811
>sp|O13919|PST2_SCHPO Paired amphipathic helix protein pst2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst2 PE=1 SV=1
Length = 1075
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 108/215 (50%), Gaps = 20/215 (9%)
Query: 190 PEYYWMPL------ASNRSEIGDQVLNDNLVCAST-GTERSSFKQRRRTKQEEVLFKCED 242
P Y +P+ S R + +LND+ V T +E S F +R+T EE + K E+
Sbjct: 339 PSYRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGFIVQRKTPYEEAMTKLEE 398
Query: 243 DRFELDLLLGWMHSAAENVEKLMIKIDDQNQDDEKSSKIEIEGHLGISD----LRCIERL 298
+R+E D + ++++K+ +I++ +++ ++ +E EG LG+ + I+ +
Sbjct: 399 ERYEFDRHIEATSWTIKSLKKIQNRINELPEEERETYTLE-EG-LGLPSKSIYKKTIKLV 456
Query: 299 Y-AEHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKNHDKLQEM 357
Y +EH ++ L + P LP+++ L++K EE + W + KN+DK +
Sbjct: 457 YTSEHAEEMFKALERMPCLTLPLVISRLEEKNEEWKSVKRSLQPGWRSIEFKNYDKSLDS 516
Query: 358 Q------RELKNSKREDLVAKEEKLQKEEEMNLDV 386
Q R+ KN + L+A+ + L+ + +++ +
Sbjct: 517 QCVYFKARDKKNVSSKFLLAEADILRSQAKLHFPL 551
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana
GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 1 MQCTQICRGNKMMSS---TSRDDHRDDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKR 57
+ CT+ +G+KM T R D ++ GV + G A+ +LK ++ +
Sbjct: 271 IGCTKGAKGSKMFCKACITKRPLTIDGGGNMGGVTT-----------GDALNYLKAVKDK 319
Query: 58 FRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNE 111
F + F ++L+D +D + +K+LFKGHDDL+ +N ++ E
Sbjct: 320 FEDSEK--YDTFLEVLNDCKHQGVDTSGVIARLKDLFKGHDDLLLGFNTYLSKE 371
>sp|O74755|PST3_SCHPO Paired amphipathic helix protein pst3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pst3 PE=3 SV=1
Length = 1154
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 182 VSPSYWRLPEYYWMPLASNRSEIGDQVLNDNLVCASTGTERSSFKQRRRTKQEEVLFKCE 241
+S +Y +LP+ + S R ++ + VLND+ + + + + L E
Sbjct: 496 ISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQALQLVE 555
Query: 242 DDRFELDLLLGWMHSAAENV-----EKLMIKIDDQNQDDEKSSKIEIEGHLGISDLRCIE 296
D+R++ D +L SA + + + ++ Q+ E+S +I I+ L I
Sbjct: 556 DERYDYDRVLNTTESAIKILANFCEPTIHEHLETALQELERSKRI-IKNALII------- 607
Query: 297 RLYA-EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSDCNKIWAHVCAKN 350
+Y EH +D L K TA PV+LK +K K +E + + +KIW + KN
Sbjct: 608 -VYGKEHANLALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKREWSKIWRQIEKKN 661
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 47 AVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNV 106
A+++L E+ K + + I+ RF +++ DF +D + V ELF G+ LI +N
Sbjct: 118 ALSYL-ELVKYYFSERREIYNRFLEIMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNT 176
Query: 107 FV 108
F+
Sbjct: 177 FL 178
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 11 KMMSSTSRDDHRDDDDDLNGVYSQFRAFALADLRGAAVAFLKEMRKRFRKQHDGIFVRFC 70
+ M STS D + N V S D A+A++ +++ R+ D ++ F
Sbjct: 224 RTMESTSPTDSQPQPSAPNLVSSTENEKPRVDF-NYAIAYMNKVKARYPPNSD-TYMEFL 281
Query: 71 QLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGA 119
+L + K++ + V E+FK DL+ ++ +F+ + D E
Sbjct: 282 GVLRTYQKAQKSIFEVRARVAEIFKDSPDLLEEFKLFLPDNVDSTEPST 330
>sp|Q66JL0|NDE1_XENTR Nuclear distribution protein nudE homolog 1 OS=Xenopus tropicalis
GN=nde1 PE=2 SV=1
Length = 349
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 54 MRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDL 100
+++++ +QH +V+ C L D +++K RD L ++EL + +DDL
Sbjct: 79 IKEKYEEQHSENYVQICSLEGDLSQTKAVRDQLQKYIRELEQANDDL 125
>sp|Q61575|FOXN1_MOUSE Forkhead box protein N1 OS=Mus musculus GN=Foxn1 PE=2 SV=1
Length = 648
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 328 KVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVG 387
K E VE +S + + A N K+ +MQ EL+ KR+D +A + + K EE++ +G
Sbjct: 327 KCFEKVENKSGSSSRKGCLWALNPSKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIG 386
>sp|O15353|FOXN1_HUMAN Forkhead box protein N1 OS=Homo sapiens GN=FOXN1 PE=2 SV=1
Length = 648
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 328 KVEELVERRSDCNKIWAHVCAKNHDKLQEMQRELKNSKREDLVAKEEKLQKEEEMNLDVG 387
K E VE +S + + A N K+ +MQ EL+ KR+D +A + + K EE++ +G
Sbjct: 327 KCFEKVENKSGSSSRKGCLWALNPAKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIG 386
>sp|Q66J96|NDE1A_XENLA Nuclear distribution protein nudE homolog 1-A OS=Xenopus laevis
GN=nde1-a PE=1 SV=1
Length = 349
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 51 LKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDL 100
L +++++ +QH +V+ L D +++K RD L ++EL + +DDL
Sbjct: 76 LDAIKEKYEEQHSENYVQISTLEGDLSQTKAVRDQLQKYIRELEQANDDL 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,232,575
Number of Sequences: 539616
Number of extensions: 6762658
Number of successful extensions: 36428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 35574
Number of HSP's gapped (non-prelim): 792
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)