Query 016325
Match_columns 391
No_of_seqs 191 out of 473
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2czy_A Paired amphipathic heli 99.8 2E-21 6.7E-26 154.6 9.4 71 44-115 4-74 (77)
2 2cr7_A Paired amphipathic heli 99.8 2.8E-20 9.7E-25 148.9 10.4 69 44-113 10-78 (80)
3 1e91_A Paired amphipathic heli 99.8 4.2E-20 1.4E-24 149.5 9.0 68 44-112 7-84 (85)
4 2f05_A Paired amphipathic heli 99.8 1.7E-19 5.7E-24 151.3 7.2 71 44-115 7-87 (105)
5 1g1e_B SIN3A; four-helix bundl 99.8 1.8E-19 6E-24 147.1 5.9 67 44-111 10-89 (89)
6 2ld7_B Paired amphipathic heli 99.8 6.8E-19 2.3E-23 139.3 8.2 67 44-112 8-74 (75)
7 4fqn_A Malcavernin; helical do 82.8 2 6.9E-05 35.0 5.4 63 45-111 16-79 (98)
8 2cr7_A Paired amphipathic heli 60.0 5 0.00017 31.3 2.5 62 82-158 12-73 (80)
9 2czy_A Paired amphipathic heli 47.7 6.1 0.00021 30.5 1.1 59 84-157 8-66 (77)
10 2ca5_A MXIH; transport protein 45.3 27 0.00094 27.6 4.5 35 302-338 29-63 (85)
11 1e91_A Paired amphipathic heli 44.6 17 0.00058 28.5 3.3 69 84-158 11-80 (85)
12 2f05_A Paired amphipathic heli 33.5 22 0.00076 29.1 2.4 68 85-158 12-80 (105)
13 2nw8_A Tryptophan 2,3-dioxygen 28.2 1.3E+02 0.0046 28.9 7.3 71 253-330 90-164 (306)
14 2g0u_A Type III secretion syst 25.3 88 0.003 25.1 4.5 36 301-338 34-69 (92)
15 3k1r_A Harmonin; protein-prote 23.0 1.5E+02 0.005 25.6 6.1 66 44-112 3-70 (192)
No 1
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=99.85 E-value=2e-21 Score=154.59 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCCCc
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDE 115 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~ 115 (391)
+++|++|+++||.+|++ +|++|.+||++|++|+.+++++.+|+++|+.||+||||||.|||.|||+++.+.
T Consensus 4 ~~dA~~yl~~VK~~F~~-~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~ 74 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRID 74 (77)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCC
T ss_pred HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCCCCceec
Confidence 78999999999999987 599999999999999999999999999999999999999999999999999875
No 2
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=99.82 E-value=2.8e-20 Score=148.92 Aligned_cols=69 Identities=25% Similarity=0.498 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD 113 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~ 113 (391)
+++|++|+++||.+|++ +|++|.+||++|++|+.++|++.+|+++|+.||++|||||.|||.|||+++.
T Consensus 10 ~~dA~~yl~~VK~rF~~-~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~ 78 (80)
T 2cr7_A 10 VEDALTYLDQVKIRFGS-DPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS 78 (80)
T ss_dssp SCCSHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHCcCCCC
Confidence 56779999999999987 5999999999999999999999999999999999999999999999999885
No 3
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=99.81 E-value=4.2e-20 Score=149.53 Aligned_cols=68 Identities=24% Similarity=0.596 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCC----------ChhhHHHHHHHHhccChHHHHHHchhccCcC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI----------DRDSLGLEVKELFKGHDDLIHKYNVFVRNEA 112 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I----------~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~ 112 (391)
+++|++|+++||.||++ +|++|++||+||++|++++| +..+|+++|+.||+||||||.||+.|||+++
T Consensus 7 ~~~A~~yv~kVK~rF~~-~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP~~~ 84 (85)
T 1e91_A 7 FNNAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAK 84 (85)
T ss_dssp HHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCcCcc
Confidence 78999999999999987 59999999999999999985 4678999999999999999999999999986
No 4
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=99.78 E-value=1.7e-19 Score=151.30 Aligned_cols=71 Identities=23% Similarity=0.558 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCC----------ChhhHHHHHHHHhccChHHHHHHchhccCcCC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKI----------DRDSLGLEVKELFKGHDDLIHKYNVFVRNEAD 113 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I----------~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~ 113 (391)
+++|++|+++||.||++ +|++|.+||+||++|+.+++ ++.+|+++|+.||++|||||.||+.|||+++.
T Consensus 7 ~~dA~~YvnkVK~rF~d-~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP~~~~ 85 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLD-HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR 85 (105)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHHCCCccc
Confidence 78999999999999987 59999999999999999876 45689999999999999999999999999998
Q ss_pred Cc
Q 016325 114 DE 115 (391)
Q Consensus 114 ~~ 115 (391)
+.
T Consensus 86 ~~ 87 (105)
T 2f05_A 86 SL 87 (105)
T ss_dssp --
T ss_pred cC
Confidence 75
No 5
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=99.77 E-value=1.8e-19 Score=147.06 Aligned_cols=67 Identities=21% Similarity=0.552 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCC-------------CChhhHHHHHHHHhccChHHHHHHchhccC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSK-------------IDRDSLGLEVKELFKGHDDLIHKYNVFVRN 110 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~-------------I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~ 110 (391)
.++|++|+++||.||++ +|++|++||+||++|+++. |+..+|+++|+.||++|||||.||+.|||+
T Consensus 10 ~~~A~~YvnkVK~rF~~-~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~FLP~ 88 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQG-QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPD 88 (89)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHHHHHCcC
Confidence 78999999999999987 5999999999999999764 445899999999999999999999999997
Q ss_pred c
Q 016325 111 E 111 (391)
Q Consensus 111 ~ 111 (391)
+
T Consensus 89 ~ 89 (89)
T 1g1e_B 89 A 89 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=99.77 E-value=6.8e-19 Score=139.25 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccChHHHHHHchhccCcC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHDDLIHKYNVFVRNEA 112 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~ 112 (391)
..+|++||++||++|++ +++|.+||+||++|++++||+.+|+++|..||++||||+.||+.|||.+.
T Consensus 8 ~~de~~Ff~kVK~~l~~--~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~e 74 (75)
T 2ld7_B 8 VGTESLFFDKVRKALRS--AEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKE 74 (75)
T ss_dssp SSHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHccCHHHHHHHHHHcCCCC
Confidence 45779999999999954 78999999999999999999999999999999999999999999999864
No 7
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=82.83 E-value=2 Score=34.95 Aligned_cols=63 Identities=11% Similarity=0.314 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhccCh-HHHHHHchhccCc
Q 016325 45 GAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKGHD-DLIHKYNVFVRNE 111 (391)
Q Consensus 45 ~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~hp-dLi~~F~~FLp~~ 111 (391)
+.-.+|+.-++..| .|..-.+|..+|+.|+.+ +++.+.......|++.+. .|+.+-.-|+|+.
T Consensus 16 e~lqdYM~~L~~~L---~~~ElqqFA~Llr~YR~G-~~I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~ 79 (98)
T 4fqn_A 16 ELLQDYMLTLRTKL---SSQEIQQFAALLHEYRNG-ASIHEFCINLRQLYGDSRKFLLLGLRPFIPEK 79 (98)
T ss_dssp HHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHCGGGGGGGGGGGGGSCHH
T ss_pred HHHHHHHHHHHhhc---ChHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhchHHHHHHhhccCCCChh
Confidence 34467999999999 377999999999999999 799999999999998776 7777777777664
No 8
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=60.00 E-value=5 Score=31.26 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHhccChHHHHHHchhccCcCCCccCCCCCCCCCCCCCCCchhhHHHHHHhhccccCChHHHHHHHH
Q 016325 82 DRDSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYV 158 (391)
Q Consensus 82 ~~~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~~~~~G~~~~~~~dk~~~~e~~~ev~~lf~d~~~d~~~efer~~ 158 (391)
+.-.-+..|+.-|++.|+...+|-..|-.-.. + +....+++.+|+.||.+ |+|++.+|..|+
T Consensus 12 dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~------~--------~~~~~~v~~rV~~Lf~~-hpdLi~gFn~FL 73 (80)
T 2cr7_A 12 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKS------Q--------SIDTPGVIRRVSQLFHE-HPDLIVGFNAFL 73 (80)
T ss_dssp CSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHT------T--------SSCHHHHHHHHHHHGGG-CHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHh------c--------CCCHHHHHHHHHHHHcC-CHHHHHHHHHHC
Confidence 44567889999999999999998887743211 1 11235788899999987 589999998764
No 9
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=47.74 E-value=6.1 Score=30.48 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhccChHHHHHHchhccCcCCCccCCCCCCCCCCCCCCCchhhHHHHHHhhccccCChHHHHHHH
Q 016325 84 DSLGLEVKELFKGHDDLIHKYNVFVRNEADDEEDGAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERY 157 (391)
Q Consensus 84 ~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~~~~~G~~~~~~~dk~~~~e~~~ev~~lf~d~~~d~~~efer~ 157 (391)
-.-+..|+.-|++.|+...+|-..|-.=. .+ +....+++.+|+.||.+ |+|++.+|..|
T Consensus 8 ~~yl~~VK~~F~~~p~~Y~~FL~im~~~k------~~--------~~~~~~v~~rv~~Lf~~-hpdLi~gFn~F 66 (77)
T 2czy_A 8 LTYLDQVKIRFGSDPATYNGFLEIMKEFK------SQ--------SIDTPGVIRRVSQLFHE-HPDLIVGFNAF 66 (77)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHH------TT--------CSCHHHHHHHHHHHTTT-CHHHHHHHHTT
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHH------Hc--------CCCHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 34577888899999999888887773311 11 11135778899999987 58999999765
No 10
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=45.26 E-value=27 Score=27.62 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=29.2
Q ss_pred chHHHHHHHhhCCCcchhHhhhhHHHHHHHHHHHHHH
Q 016325 302 HGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSD 338 (391)
Q Consensus 302 ~g~evl~~l~~nP~~alPvVL~RLkqK~eEw~~~r~~ 338 (391)
.-.+.++.|.++| .=|.+|..+.+|..||.-.|.-
T Consensus 29 ~v~~Ai~~L~~~P--snPa~LAeyQ~kl~eysl~rNa 63 (85)
T 2ca5_A 29 ELTLALDKLAKNP--SNPQLLAEYQSKLSEYTLYRNA 63 (85)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999 5799999999999999876643
No 11
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=44.65 E-value=17 Score=28.48 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=45.7
Q ss_pred hhHHHHHHHHhccChHHHHHHchhccCcCCCccC-CCCCCCCCCCCCCCchhhHHHHHHhhccccCChHHHHHHHH
Q 016325 84 DSLGLEVKELFKGHDDLIHKYNVFVRNEADDEED-GAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYV 158 (391)
Q Consensus 84 ~ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~~~-~~G~~~~~~~dk~~~~e~~~ev~~lf~d~~~d~~~efer~~ 158 (391)
-.-+..|+.-|++.|+....|-..|-. ++.... .+|.... .....+++.+|+.||.+ |+|++.+|..|+
T Consensus 11 ~~yv~kVK~rF~~~p~~Y~~FL~il~~-yk~~~~d~~~~~~~----~~s~~eV~~~V~~Lf~~-hpDLl~~F~~FL 80 (85)
T 1e91_A 11 ISYVNKIKTRFLDHPEIYRSFLEILHT-YQKEQLHTKGRPFR----GMSEEEVFTEVANLFRG-QEDLLSEFGQFL 80 (85)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHH-HHHTTCSSSCCCSS----CCCHHHHHHHHHHHTSS-CHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH-HHHccccccccccc----cCcHHHHHHHHHHHHcc-CHHHHHHHHHHC
Confidence 356778899999999999999888743 221100 1121000 01135788999999988 589999998764
No 12
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=33.54 E-value=22 Score=29.08 Aligned_cols=68 Identities=26% Similarity=0.369 Sum_probs=45.3
Q ss_pred hHHHHHHHHhccChHHHHHHchhccCcCCCccC-CCCCCCCCCCCCCCchhhHHHHHHhhccccCChHHHHHHHH
Q 016325 85 SLGLEVKELFKGHDDLIHKYNVFVRNEADDEED-GAGGDSDHDDDDNHEPELKTEVAKLFGDEHGDLYEEFERYV 158 (391)
Q Consensus 85 ev~~~V~~Lf~~hpdLi~~F~~FLp~~~~~~~~-~~G~~~~~~~dk~~~~e~~~ev~~lf~d~~~d~~~efer~~ 158 (391)
.-+..|+.-|++.|+....|-..|-. ++.... .+|..- . .....+++.+|+.||.+ |+|++.+|..|+
T Consensus 12 ~YvnkVK~rF~d~p~vY~~FL~IL~~-yk~~~~d~~g~~~---~-~~s~~eV~~~V~~LF~~-hpDLl~eFn~FL 80 (105)
T 2f05_A 12 SYVNKIKTRFLDHPEIYRSFLEILHT-YQKEQLHTKGRPF---R-GMSEEEVFTEVANLFRG-QEDLLSEFGQFL 80 (105)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSSSSSSSS---C-CCCHHHHHHHHHHHTTT-CHHHHHHHHHHS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHH-HHhcccccccccc---c-cCcHHHHHHHHHHHHcc-CHHHHHHHHHHC
Confidence 45778889999999999998887742 221110 112100 0 01135788999999988 589999998875
No 13
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=28.20 E-value=1.3e+02 Score=28.86 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhccCcchhhcccccc--cCCcc--hhhHHHHHHHHhcchHHHHHHHhhCCCcchhHhhhhHHHH
Q 016325 253 WMHSAAENVEKLMIKIDDQNQDDEKSSKIEI--EGHLG--ISDLRCIERLYAEHGLDVIDNLHKNPETALPVILKSLKQK 328 (391)
Q Consensus 253 ~~~~tI~~Le~l~~~i~~~~~~~~~~~~~~l--~~~l~--~i~~r~I~riYG~~g~evl~~l~~nP~~alPvVL~RLkqK 328 (391)
++....+.|.....-+..|+| .+...||- .+.+| |...|.|+.+=|..-.. ...|....|-+..+|.+-
T Consensus 90 Rv~ri~~~L~~~~~vL~tMtP--~dF~~FR~~Lg~aSGFQS~qyR~iE~~lG~k~~~-----~l~~~~~~p~~~~~l~~~ 162 (306)
T 2nw8_A 90 RSKQVLRQLTEQWSVLETLTP--SEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNPQ-----MLQVFAYDPAGQARLREV 162 (306)
T ss_dssp HHHHHHHHHHHTHHHHTTCCH--HHHTTTGGGSCSCCGGGCHHHHHHHHHHTCCCGG-----GGSTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHh-----hhcccccCHHHHHHHHHH
Confidence 333444444444556678888 66666653 33333 88899999999954333 234556788888887764
Q ss_pred HH
Q 016325 329 VE 330 (391)
Q Consensus 329 ~e 330 (391)
..
T Consensus 163 ~~ 164 (306)
T 2nw8_A 163 LE 164 (306)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 14
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=25.32 E-value=88 Score=25.08 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=29.2
Q ss_pred cchHHHHHHHhhCCCcchhHhhhhHHHHHHHHHHHHHH
Q 016325 301 EHGLDVIDNLHKNPETALPVILKSLKQKVEELVERRSD 338 (391)
Q Consensus 301 ~~g~evl~~l~~nP~~alPvVL~RLkqK~eEw~~~r~~ 338 (391)
+.-.+.++.|.++| .=|++|..+..|..||.-.|.-
T Consensus 34 ~~l~~Al~~L~~~p--sNPa~LAe~Qa~lseynl~RNa 69 (92)
T 2g0u_A 34 KQLQDAQANLTKNP--SDPTALANYQMIMSEYNLYRNA 69 (92)
T ss_dssp HHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 34456788889999 5799999999999999876653
No 15
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=23.04 E-value=1.5e+02 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhcc--ChHHHHHHchhccCcC
Q 016325 44 RGAAVAFLKEMRKRFRKQHDGIFVRFCQLLSDFTKSKIDRDSLGLEVKELFKG--HDDLIHKYNVFVRNEA 112 (391)
Q Consensus 44 ~~dAl~F~~kVK~rf~~~~p~~Y~eFLkiL~~y~~~~I~~~ev~~~V~~Lf~~--hpdLi~~F~~FLp~~~ 112 (391)
++-|..|..+|-+.+. +++....++.+|+.|.... +..++...+...+.. +..++..+..++|.+.
T Consensus 3 ~~~a~ef~~~v~~~l~--~~~e~~~l~~~L~~~~~~~-~v~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 70 (192)
T 3k1r_A 3 RKVAREFRHKVDFLIE--NDAEKDYLYDVLRMYHQTM-DVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKH 70 (192)
T ss_dssp HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHC-CHHHHHHHHTTTCCSGGGTHHHHHHGGGSCGGG
T ss_pred hHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhhcC-CHHHHHHHHHhhcCCccccccchhhhhccCccc
Confidence 4678899999999995 4789999999999999775 566777666666543 2246666666666654
Done!