BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016326
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 12 QSIPYQDLPHLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 67
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 68 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 126
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AGMVL S
Sbjct: 127 IAILTAAERPGHFAGMVLIS 146
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 29 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 84
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 85 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 143
Query: 149 TSLLYGAEDPS-IAGMVLDSAF 169
++L AE P AGMVL S
Sbjct: 144 IAILTAAERPGHFAGMVLISPL 165
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A +L+
Sbjct: 30 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARMLMG 85
Query: 92 SNITLFTLDFSGSGLSDGDYVSLG-WH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ + + +H +D L+ V S ++ + + L G SMG
Sbjct: 86 LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDS-MQKDYPGLPVFLLGHSMGGA 144
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AGMVL S
Sbjct: 145 IAILTAAERPGHFAGMVLIS 164
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 56 MPSPFPEDTPLPCVVYCH-----GNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGD 110
+P P P+ +V CH G S AA L IT+ +F G S G
Sbjct: 28 LPEPDVAVQPVTAIV-CHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 86
Query: 111 YVSLGWHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGA 155
+ G E+DDL+ V ++R + T + L G S GA SL A
Sbjct: 87 F-DHGDGEQDDLRAVAEWVRAQRPTDTLWLAGFSFGAYVSLRAAA 130
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G S G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 33 RSYKRQDL-EIRNARGHVLQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLP 91
+S QDL + NA G L C ++ P+ TP + HG E A L
Sbjct: 29 QSIPYQDLPHLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEHSGRYEELARXLXG 84
Query: 92 SNITLFTLDFSGSGLSDGD-YVSLGWH--EKDDLKVVVSYLRGNKQTSRIGLWGRSMGAV 148
++ +F D G G S+G+ V +H +D L+ V S + + + L G S G
Sbjct: 85 LDLLVFAHDHVGHGQSEGERXVVSDFHVFVRDVLQHVDSXQK-DYPGLPVFLLGHSXGGA 143
Query: 149 TSLLYGAEDPS-IAGMVLDS 167
++L AE P AG VL S
Sbjct: 144 IAILTAAERPGHFAGXVLIS 163
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G + G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 50 LQCSHYMPSPFPEDTPLPCVVYCHGNSGCRADA--NEAAVILLPSNITLFTLDFSGSGLS 107
LQ PF E + + HG + R + E A L NI DF+G G S
Sbjct: 32 LQLVGTREEPFGEIYDMAIIF--HGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 108 DGDYVSLG-WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVT-SLLYGAEDPSIAGMVL 165
DG + ++ +E +D +++Y++ + I L G + G V S+L G I +VL
Sbjct: 90 DGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 22/182 (12%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T + G G+ + V G
Sbjct: 7 PKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGP 66
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA----- 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 67 DDWWQ--DVMNGYEFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTMCAPMYIK 122
Query: 169 -FSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKSLLYEIITG 227
+++ +LE YK R K ++ Q+ KF + LK+ L E+I
Sbjct: 123 SEETMYEGVLEYAREYKKREGKSE--------EQIEQEMEKFKQTPMKTLKA-LQELIAD 173
Query: 228 LR 229
+R
Sbjct: 174 VR 175
>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
Stearothermophilus
Length = 247
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T + G G+ + V G
Sbjct: 7 PKPFFFEAGERAVLLLHGFTGNSADVRXLGRFLESKGYTCHAPIYKGHGVPPEELVHTGP 66
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 67 DDWWQ--DVXNGYQFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTXCA 117
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 57 PSPFPEDTPLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLG- 115
P PF + V+ HG +G AD L T +SG G+ G
Sbjct: 6 PKPFFFEAGERAVLLLHGFTGNSADVRMLGRFLESKGYTCHAPIYSGHGVPPEALTRFGP 65
Query: 116 --WHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSA----- 168
W + D+ +L+ NK +I + G S+G V SL G P I G+V A
Sbjct: 66 EAWWQ--DVMNGYEFLK-NKGYEKIAVAGLSLGGVFSLKLGYTVP-IEGIVTMCAPMYIK 121
Query: 169 -FSDLFDLMLELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKSLLYEI 224
+++ +LE YK R K + + + + ++K + ++ L L+ L+ ++
Sbjct: 122 SEETMYEGVLEYAREYKKREGK-----SEEQIEQEMEKFKQTPMLTLKALQELIADV 173
>pdb|4I19|A Chain A, The Crystal Structure Of An Epoxide Hydrolase From
Streptomyces Carzinostaticus Subsp. Neocarzinostaticus
Length = 388
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 66/170 (38%), Gaps = 42/170 (24%)
Query: 15 AEYNPDQYLW---ERDFMLAGRSYKRQDLEIRNARGHVLQCSHYMPSPFPEDTPLPCVVY 71
AEY D + W ER Y + EI A H L SP P+ TP V
Sbjct: 49 AEYWRDGFDWRAAERRI----NQYPQFTTEIDGATIHFLHVR----SPEPDATP---XVI 97
Query: 72 CHGNSGC--------------RA---DANEAAVILLPSNITLFTLDFSGSGLSDGDYVSL 114
HG G RA D +A +++PS G GLS G S
Sbjct: 98 THGWPGTPVEFLDIIGPLTDPRAHGGDPADAFHLVIPS--------LPGFGLS-GPLKSA 148
Query: 115 GWHEKDDLKVVVSYLRGNKQTSRIGLWGRSMGAVTSLLYGAEDPS-IAGM 163
GW E + S L + R G +GA TSLL GA DPS +AG+
Sbjct: 149 GW-ELGRIAXAWSKLXASLGYERYIAQGGDIGAFTSLLLGAIDPSHLAGI 197
>pdb|2YHG|A Chain A, Ab Initio Phasing Of A Nucleoside Hydrolase-Related
Hypothetical Protein From Saccharophagus Degradans That
Is Associated With Carbohydrate Metabolism
Length = 437
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 81 DANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGW 116
DANEA + L S + +LD SGS DGD ++ W
Sbjct: 341 DANEAVMYLNASAGSTVSLDASGSSDPDGDSLNYSW 376
>pdb|3F4M|A Chain A, Crystal Structure Of Tipe2
Length = 161
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 122 LKVVVSYLRGNKQTSRIGLWGR-----SMGAVTSLLYGAEDPSIAGMVLDSAFSDLFDLM 176
+KV V + G+ S + L R GA+T+L +G D + VL ++ D++
Sbjct: 45 IKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVL 104
Query: 177 LELVD 181
LELV+
Sbjct: 105 LELVE 109
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 65 PLPCVVYCHGNSGCRADANEAAVILLPSNITLFTLDFSGSGLSDGDYVSLGWHEKDDLKV 124
P P V+ G + ++ + ++L T D G G +Y + +
Sbjct: 151 PHPAVIXLGGLESTKEESFQXENLVLDRGXATATFDGPGQG-EXFEYKRIAGDYEKYTSA 209
Query: 125 VVSYLRGNK--QTSRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSDL 172
VV L + + IG+ GRS+G +L A +P +A + FSDL
Sbjct: 210 VVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDL 259
>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 250
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 39 DLEIRNARGHVLQCSHYMPSPFPEDTPLPCV 69
+L +RNA +Q + MP+P P +P+P +
Sbjct: 164 ELFVRNASSEEIQRAFAMPAPTPSSSPVPTL 194
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 121 DLKVVVSYLRGNKQTSRIGLWGRSMGAVTSL----LYGAEDPSIAGMVL 165
D+K VVS+++ + RI L G S G + +L LY D I G++L
Sbjct: 129 DIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKND--IKGLIL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,267,723
Number of Sequences: 62578
Number of extensions: 344606
Number of successful extensions: 730
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 18
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)