Query 016328
Match_columns 391
No_of_seqs 238 out of 2421
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.1E-45 1.1E-49 359.9 29.7 276 66-380 277-555 (571)
2 KOG4441 Proteins containing BT 100.0 2.2E-43 4.8E-48 348.3 28.8 275 31-334 282-565 (571)
3 PHA02713 hypothetical protein; 100.0 8.2E-43 1.8E-47 345.6 27.2 259 90-381 272-543 (557)
4 PLN02153 epithiospecifier prot 100.0 1.5E-40 3.2E-45 313.1 30.3 292 26-371 25-339 (341)
5 PLN02193 nitrile-specifier pro 100.0 9.3E-39 2E-43 311.7 34.8 317 29-372 116-469 (470)
6 PLN02153 epithiospecifier prot 100.0 6.2E-39 1.3E-43 302.0 30.7 267 97-378 4-291 (341)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 7.5E-39 1.6E-43 302.4 29.1 286 26-370 10-345 (346)
8 PHA02713 hypothetical protein; 100.0 2.2E-39 4.7E-44 321.2 26.1 262 35-326 259-544 (557)
9 PLN02193 nitrile-specifier pro 100.0 5.1E-38 1.1E-42 306.5 31.5 256 93-378 140-417 (470)
10 TIGR03548 mutarot_permut cycli 100.0 3.2E-38 7E-43 295.1 26.4 283 24-353 4-316 (323)
11 PRK14131 N-acetylneuraminic ac 100.0 3.2E-37 7E-42 293.5 27.7 261 99-374 61-371 (376)
12 KOG4693 Uncharacterized conser 100.0 4.6E-38 1E-42 266.5 18.6 274 15-351 12-313 (392)
13 PHA03098 kelch-like protein; P 100.0 6.1E-37 1.3E-41 305.7 28.5 263 91-388 265-528 (534)
14 PHA03098 kelch-like protein; P 100.0 2.4E-36 5.2E-41 301.4 26.8 237 27-329 288-525 (534)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 5E-36 1.1E-40 283.2 27.3 264 105-390 1-320 (346)
16 PHA02790 Kelch-like protein; P 100.0 4E-36 8.7E-41 293.9 25.6 190 91-323 288-478 (480)
17 PHA02790 Kelch-like protein; P 100.0 2.8E-35 6.1E-40 288.0 28.1 212 117-380 267-479 (480)
18 PRK14131 N-acetylneuraminic ac 100.0 1.9E-34 4.2E-39 274.5 28.6 268 101-390 18-342 (376)
19 TIGR03548 mutarot_permut cycli 100.0 8.1E-34 1.8E-38 265.4 27.4 250 111-390 3-302 (323)
20 KOG4693 Uncharacterized conser 100.0 5.5E-34 1.2E-38 241.8 19.2 268 101-390 3-301 (392)
21 KOG0379 Kelch repeat-containin 100.0 9.4E-28 2E-32 233.8 23.9 268 22-352 59-344 (482)
22 KOG0379 Kelch repeat-containin 100.0 3.7E-27 8E-32 229.7 25.6 251 107-388 56-325 (482)
23 KOG1230 Protein containing rep 100.0 8.5E-28 1.8E-32 215.5 18.0 260 106-377 61-346 (521)
24 KOG4152 Host cell transcriptio 100.0 2.3E-27 5.1E-32 217.6 19.8 290 65-371 29-363 (830)
25 KOG4152 Host cell transcriptio 99.9 1.6E-26 3.4E-31 212.2 16.8 275 23-314 32-361 (830)
26 KOG1230 Protein containing rep 99.9 3.4E-25 7.4E-30 198.9 17.4 254 61-322 59-347 (521)
27 COG3055 Uncharacterized protei 99.8 5E-19 1.1E-23 157.4 19.7 257 91-356 59-365 (381)
28 COG3055 Uncharacterized protei 99.8 1.3E-18 2.9E-23 154.7 20.6 261 103-385 28-343 (381)
29 KOG2437 Muskelin [Signal trans 99.5 3.6E-15 7.8E-20 137.7 -1.4 296 24-374 261-615 (723)
30 KOG2437 Muskelin [Signal trans 99.5 2.9E-14 6.3E-19 131.7 3.9 184 99-287 238-459 (723)
31 PF13964 Kelch_6: Kelch motif 99.3 4.5E-12 9.7E-17 83.7 6.5 50 161-212 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.3 5.2E-12 1.1E-16 83.4 6.4 49 111-159 1-49 (50)
33 PF01344 Kelch_1: Kelch motif; 99.2 2.4E-11 5.2E-16 79.1 4.0 47 111-157 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.1 2E-10 4.2E-15 74.8 4.2 47 161-209 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 99.0 8.7E-10 1.9E-14 72.2 6.0 49 171-220 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 99.0 9.6E-10 2.1E-14 72.1 6.0 47 111-157 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 99.0 3.5E-10 7.6E-15 74.3 3.8 47 111-157 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 99.0 2.2E-09 4.8E-14 70.3 6.6 49 161-209 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 98.9 3.7E-09 8.1E-14 69.2 5.9 48 121-170 1-49 (49)
40 smart00612 Kelch Kelch domain. 98.9 4.2E-09 9.2E-14 68.3 5.3 47 173-222 1-47 (47)
41 PF13418 Kelch_4: Galactose ox 98.8 2.9E-09 6.4E-14 69.8 3.8 48 161-210 1-49 (49)
42 smart00612 Kelch Kelch domain. 98.7 2.8E-08 6.2E-13 64.3 5.0 47 123-172 1-47 (47)
43 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.7E-06 5.8E-11 75.0 17.9 154 138-328 46-211 (243)
44 PLN02772 guanylate kinase 98.6 3.3E-07 7.2E-12 85.6 11.2 87 109-200 22-110 (398)
45 PF13854 Kelch_5: Kelch motif 98.6 1.1E-07 2.3E-12 59.9 5.3 40 108-147 1-41 (42)
46 PLN02772 guanylate kinase 98.5 8.6E-07 1.9E-11 82.8 10.5 79 161-245 24-106 (398)
47 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.8E-11 54.9 5.4 40 159-199 2-41 (42)
48 TIGR01640 F_box_assoc_1 F-box 98.3 0.00024 5.2E-09 63.0 20.6 181 90-283 14-215 (230)
49 PF07250 Glyoxal_oxid_N: Glyox 98.2 5.7E-05 1.2E-09 66.6 13.9 92 190-286 46-139 (243)
50 TIGR01640 F_box_assoc_1 F-box 98.1 0.00066 1.4E-08 60.2 19.9 198 138-373 14-230 (230)
51 PF03089 RAG2: Recombination a 98.1 0.0012 2.6E-08 58.2 20.4 161 123-287 40-231 (337)
52 PF03089 RAG2: Recombination a 97.9 0.0022 4.8E-08 56.6 17.4 112 173-286 40-175 (337)
53 PRK11138 outer membrane biogen 97.8 0.023 4.9E-07 54.8 25.4 261 28-374 64-356 (394)
54 PRK11138 outer membrane biogen 97.6 0.042 9E-07 53.0 24.2 246 29-346 116-382 (394)
55 PF07893 DUF1668: Protein of u 97.6 0.0062 1.4E-07 57.3 17.8 126 168-324 73-216 (342)
56 TIGR03300 assembly_YfgL outer 97.3 0.16 3.4E-06 48.6 25.3 211 28-282 60-286 (377)
57 TIGR03300 assembly_YfgL outer 97.2 0.22 4.7E-06 47.6 23.9 169 30-228 102-286 (377)
58 PF13360 PQQ_2: PQQ-like domai 96.6 0.44 9.5E-06 41.9 22.6 208 91-376 4-237 (238)
59 PF07893 DUF1668: Protein of u 96.4 0.091 2E-06 49.5 13.6 109 91-207 87-216 (342)
60 PF12768 Rax2: Cortical protei 96.3 0.059 1.3E-06 49.0 11.1 108 138-261 16-130 (281)
61 PF12768 Rax2: Cortical protei 96.2 0.19 4.2E-06 45.6 14.3 109 189-324 15-130 (281)
62 PF13360 PQQ_2: PQQ-like domai 96.1 0.93 2E-05 39.8 21.1 160 50-230 4-182 (238)
63 PRK13684 Ycf48-like protein; P 94.9 3.4 7.4E-05 38.8 19.3 199 98-350 117-323 (334)
64 KOG2055 WD40 repeat protein [G 94.9 0.29 6.2E-06 46.4 10.3 146 171-374 224-377 (514)
65 TIGR03866 PQQ_ABC_repeats PQQ- 94.7 3.2 6.9E-05 37.5 20.4 139 34-201 1-148 (300)
66 KOG2055 WD40 repeat protein [G 94.3 3.1 6.7E-05 39.7 15.6 137 122-284 225-365 (514)
67 PRK13684 Ycf48-like protein; P 94.2 5 0.00011 37.7 20.8 157 98-284 74-234 (334)
68 PF12217 End_beta_propel: Cata 93.4 5.3 0.00011 35.4 15.7 185 97-286 112-335 (367)
69 PF02191 OLF: Olfactomedin-lik 93.3 5.7 0.00012 35.5 16.1 182 121-346 30-236 (250)
70 COG4257 Vgb Streptogramin lyas 91.4 6.3 0.00014 35.4 12.5 152 33-206 158-313 (353)
71 PF08450 SGL: SMP-30/Gluconola 91.4 6.6 0.00014 34.8 13.4 86 121-228 11-103 (246)
72 PF08450 SGL: SMP-30/Gluconola 91.1 5.6 0.00012 35.3 12.6 103 90-205 22-129 (246)
73 KOG0310 Conserved WD40 repeat- 91.0 7.3 0.00016 37.5 13.3 174 120-351 121-301 (487)
74 KOG0649 WD40 repeat protein [G 90.8 8.3 0.00018 33.9 12.4 113 149-284 100-226 (325)
75 PRK04792 tolB translocation pr 90.8 18 0.00038 35.6 22.2 62 138-207 242-303 (448)
76 TIGR03866 PQQ_ABC_repeats PQQ- 90.4 13 0.00028 33.4 18.7 66 123-204 2-67 (300)
77 PRK04922 tolB translocation pr 89.8 21 0.00045 34.8 22.2 62 138-207 228-289 (433)
78 KOG0772 Uncharacterized conser 89.5 18 0.00039 35.3 14.6 201 121-381 226-456 (641)
79 PF14870 PSII_BNR: Photosynthe 89.5 17 0.00037 33.5 17.7 200 98-350 89-296 (302)
80 PF05096 Glu_cyclase_2: Glutam 89.4 4.7 0.0001 36.2 10.2 101 165-285 48-149 (264)
81 PF06433 Me-amine-dh_H: Methyl 89.4 4.2 9.1E-05 37.8 10.2 248 91-379 18-286 (342)
82 PF05096 Glu_cyclase_2: Glutam 89.4 2.7 5.9E-05 37.6 8.8 111 72-201 48-160 (264)
83 PF08268 FBA_3: F-box associat 89.4 3.4 7.3E-05 32.7 8.7 82 169-259 3-87 (129)
84 PF02191 OLF: Olfactomedin-lik 89.2 16 0.00034 32.7 16.2 162 101-282 58-237 (250)
85 cd00200 WD40 WD40 domain, foun 89.2 14 0.00031 32.1 21.0 62 122-200 105-167 (289)
86 PRK05137 tolB translocation pr 89.1 23 0.0005 34.5 21.4 62 138-207 226-287 (435)
87 TIGR02800 propeller_TolB tol-p 88.9 23 0.00049 34.1 20.9 62 138-207 214-275 (417)
88 cd00216 PQQ_DH Dehydrogenases 88.9 26 0.00057 34.8 26.0 116 29-152 57-191 (488)
89 PLN00033 photosystem II stabil 88.3 25 0.00054 33.9 19.6 117 98-230 164-300 (398)
90 PF09910 DUF2139: Uncharacteri 87.8 21 0.00046 32.5 15.3 165 152-349 27-224 (339)
91 PRK04792 tolB translocation pr 87.3 31 0.00068 33.8 18.3 104 91-206 243-346 (448)
92 smart00284 OLF Olfactomedin-li 87.2 22 0.00047 31.9 16.7 76 121-209 34-113 (255)
93 PF03178 CPSF_A: CPSF A subuni 86.8 10 0.00022 35.2 11.6 121 90-227 62-189 (321)
94 PRK00178 tolB translocation pr 86.4 33 0.00072 33.2 22.2 62 138-207 223-284 (430)
95 PF03178 CPSF_A: CPSF A subuni 85.7 12 0.00026 34.8 11.4 94 122-227 42-145 (321)
96 KOG0310 Conserved WD40 repeat- 85.5 37 0.00079 32.9 14.2 130 119-287 163-302 (487)
97 COG4946 Uncharacterized protei 85.1 39 0.00084 32.9 14.6 72 118-206 232-303 (668)
98 cd00094 HX Hemopexin-like repe 83.8 26 0.00057 29.8 14.9 94 117-231 12-120 (194)
99 KOG1332 Vesicle coat complex C 83.2 31 0.00068 30.5 11.6 103 173-324 176-296 (299)
100 KOG0296 Angio-associated migra 82.6 42 0.00092 31.4 13.4 150 165-374 68-223 (399)
101 smart00284 OLF Olfactomedin-li 82.2 37 0.00081 30.4 14.6 162 101-282 63-242 (255)
102 cd00094 HX Hemopexin-like repe 81.7 32 0.00069 29.3 14.6 55 166-230 11-71 (194)
103 PF10282 Lactonase: Lactonase, 80.0 53 0.0012 30.8 19.9 164 115-323 147-332 (345)
104 PF08268 FBA_3: F-box associat 79.9 24 0.00051 27.8 9.5 84 119-206 3-88 (129)
105 PF02239 Cytochrom_D1: Cytochr 79.7 45 0.00097 31.8 12.8 284 33-379 48-356 (369)
106 PLN03215 ascorbic acid mannose 78.2 64 0.0014 30.7 13.2 103 147-263 189-305 (373)
107 PF13088 BNR_2: BNR repeat-lik 78.1 36 0.00077 30.6 11.3 197 121-345 58-275 (275)
108 cd00200 WD40 WD40 domain, foun 78.0 45 0.00098 28.8 20.0 64 121-201 62-126 (289)
109 KOG0649 WD40 repeat protein [G 77.5 51 0.0011 29.2 12.9 150 100-284 99-264 (325)
110 PRK00178 tolB translocation pr 77.1 74 0.0016 30.8 21.9 102 91-206 224-327 (430)
111 PF14870 PSII_BNR: Photosynthe 76.0 66 0.0014 29.7 16.7 155 98-283 4-163 (302)
112 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.0 52 0.0011 33.1 12.6 96 116-227 64-171 (527)
113 PF13859 BNR_3: BNR repeat-lik 74.8 72 0.0016 29.6 15.3 186 115-326 2-217 (310)
114 PF12217 End_beta_propel: Cata 73.2 69 0.0015 28.7 16.7 213 117-350 21-259 (367)
115 PLN00181 protein SPA1-RELATED; 72.5 1.4E+02 0.003 31.8 17.5 62 122-200 545-608 (793)
116 TIGR03075 PQQ_enz_alc_DH PQQ-d 71.6 1.2E+02 0.0025 30.6 23.3 77 117-204 116-197 (527)
117 PLN00033 photosystem II stabil 71.5 1E+02 0.0022 29.8 22.0 92 98-205 118-214 (398)
118 COG4257 Vgb Streptogramin lyas 70.6 84 0.0018 28.5 14.0 182 50-260 125-313 (353)
119 PRK05137 tolB translocation pr 68.9 1.2E+02 0.0025 29.6 20.2 22 189-210 225-246 (435)
120 PF10282 Lactonase: Lactonase, 68.4 1.1E+02 0.0023 28.8 20.8 232 91-375 63-328 (345)
121 TIGR02800 propeller_TolB tol-p 67.7 1.2E+02 0.0025 29.1 19.0 125 91-230 215-341 (417)
122 PRK02889 tolB translocation pr 66.7 1.3E+02 0.0028 29.2 23.0 62 138-207 220-281 (427)
123 PTZ00421 coronin; Provisional 66.0 1.5E+02 0.0032 29.6 18.3 101 121-243 87-196 (493)
124 PRK03629 tolB translocation pr 63.2 1.5E+02 0.0033 28.8 23.1 63 138-208 223-285 (429)
125 TIGR02658 TTQ_MADH_Hv methylam 61.9 1.5E+02 0.0032 28.2 20.9 105 90-203 27-141 (352)
126 KOG0281 Beta-TrCP (transducin 61.6 29 0.00063 32.2 6.5 104 115-244 323-427 (499)
127 TIGR02658 TTQ_MADH_Hv methylam 61.2 1.5E+02 0.0033 28.1 22.7 114 33-152 12-142 (352)
128 PLN03215 ascorbic acid mannose 61.2 1.5E+02 0.0034 28.2 12.9 100 99-208 189-304 (373)
129 COG1520 FOG: WD40-like repeat 60.9 1.5E+02 0.0033 28.0 16.6 153 29-205 64-226 (370)
130 PRK04922 tolB translocation pr 59.7 1.8E+02 0.0038 28.3 22.9 104 91-206 229-332 (433)
131 PF06433 Me-amine-dh_H: Methyl 59.5 1.3E+02 0.0028 28.3 10.4 139 33-177 47-210 (342)
132 KOG0279 G protein beta subunit 58.4 1.4E+02 0.0031 27.0 15.8 183 32-244 73-261 (315)
133 PF09910 DUF2139: Uncharacteri 57.6 1.6E+02 0.0034 27.1 14.7 94 121-227 117-219 (339)
134 PF13859 BNR_3: BNR repeat-lik 57.3 1.6E+02 0.0035 27.3 11.9 177 166-351 3-194 (310)
135 KOG0646 WD40 repeat protein [G 57.3 1.9E+02 0.0042 28.1 16.4 120 50-183 19-146 (476)
136 PRK03629 tolB translocation pr 56.0 2E+02 0.0044 27.9 19.7 170 91-285 224-394 (429)
137 KOG3545 Olfactomedin and relat 55.7 1.5E+02 0.0033 26.4 15.2 181 121-346 30-235 (249)
138 KOG0291 WD40-repeat-containing 52.5 3E+02 0.0064 28.8 18.8 135 33-181 361-499 (893)
139 PRK11028 6-phosphogluconolacto 52.4 1.9E+02 0.0042 26.6 25.5 94 91-200 58-158 (330)
140 PRK02889 tolB translocation pr 52.3 2.3E+02 0.005 27.5 17.9 63 138-208 176-238 (427)
141 KOG0289 mRNA splicing factor [ 51.1 2.4E+02 0.0052 27.3 13.0 113 170-327 357-474 (506)
142 PF15525 DUF4652: Domain of un 50.6 1.6E+02 0.0034 25.1 10.0 89 129-221 79-171 (200)
143 KOG0278 Serine/threonine kinas 50.0 1.9E+02 0.0042 25.9 9.8 25 337-371 275-299 (334)
144 KOG0647 mRNA export protein (c 48.1 2.2E+02 0.0049 26.1 10.2 53 138-199 94-146 (347)
145 KOG0316 Conserved WD40 repeat- 47.3 2.1E+02 0.0045 25.5 13.2 102 121-244 70-172 (307)
146 cd00216 PQQ_DH Dehydrogenases 47.3 3E+02 0.0065 27.3 21.2 96 115-226 55-161 (488)
147 TIGR03074 PQQ_membr_DH membran 46.2 3.9E+02 0.0085 28.4 21.5 26 29-60 190-215 (764)
148 PF13570 PQQ_3: PQQ-like domai 45.9 43 0.00094 20.0 3.7 26 165-199 15-40 (40)
149 PLN00181 protein SPA1-RELATED; 44.3 4.2E+02 0.0091 28.2 23.3 99 121-244 587-689 (793)
150 PRK11028 6-phosphogluconolacto 43.0 2.7E+02 0.0059 25.6 24.2 18 310-327 300-318 (330)
151 KOG1332 Vesicle coat complex C 42.1 2.1E+02 0.0045 25.6 8.3 73 110-207 221-296 (299)
152 KOG0289 mRNA splicing factor [ 41.1 2.8E+02 0.0061 26.9 9.6 118 25-158 349-474 (506)
153 PRK04043 tolB translocation pr 40.6 3.5E+02 0.0077 26.2 18.6 103 91-206 214-317 (419)
154 KOG0281 Beta-TrCP (transducin 40.2 3.2E+02 0.007 25.7 11.2 18 268-285 362-379 (499)
155 PF05262 Borrelia_P83: Borreli 39.8 2.2E+02 0.0048 28.3 9.2 87 133-227 370-456 (489)
156 KOG0282 mRNA splicing factor [ 39.8 3.8E+02 0.0081 26.3 13.0 31 23-55 216-246 (503)
157 PF08662 eIF2A: Eukaryotic tra 39.3 2.4E+02 0.0051 24.0 8.6 91 121-228 71-161 (194)
158 PRK04043 tolB translocation pr 38.0 3.9E+02 0.0084 26.0 20.0 193 139-378 214-407 (419)
159 KOG0285 Pleiotropic regulator 37.4 3.7E+02 0.0079 25.5 18.1 95 33-148 162-267 (460)
160 KOG0316 Conserved WD40 repeat- 37.0 3E+02 0.0066 24.5 10.9 128 49-201 39-176 (307)
161 KOG2321 WD40 repeat protein [G 36.7 4.7E+02 0.01 26.5 11.0 75 110-201 132-208 (703)
162 PF13088 BNR_2: BNR repeat-lik 35.2 1.4E+02 0.003 26.6 6.9 123 96-226 141-275 (275)
163 PTZ00420 coronin; Provisional 34.8 5.1E+02 0.011 26.4 15.0 23 33-60 137-159 (568)
164 PRK10115 protease 2; Provision 33.8 5.8E+02 0.013 26.7 20.7 131 138-285 199-335 (686)
165 PTZ00421 coronin; Provisional 32.7 5.1E+02 0.011 25.8 15.1 22 34-60 138-159 (493)
166 KOG2048 WD40 repeat protein [G 32.6 5.7E+02 0.012 26.3 20.3 29 49-77 47-78 (691)
167 KOG0643 Translation initiation 31.9 2.9E+02 0.0063 25.0 7.7 149 34-198 159-319 (327)
168 TIGR03074 PQQ_membr_DH membran 30.1 7E+02 0.015 26.6 15.5 34 116-156 189-224 (764)
169 PRK01742 tolB translocation pr 30.0 5.2E+02 0.011 25.0 21.5 61 138-207 228-289 (429)
170 PF02897 Peptidase_S9_N: Proly 27.6 5.5E+02 0.012 24.5 16.2 251 33-322 134-411 (414)
171 KOG2315 Predicted translation 27.1 4.3E+02 0.0094 26.5 8.7 90 50-147 252-345 (566)
172 KOG0272 U4/U6 small nuclear ri 26.7 5.9E+02 0.013 24.6 11.4 137 169-351 312-452 (459)
173 PF08950 DUF1861: Protein of u 25.9 3.7E+02 0.0079 24.5 7.4 108 169-281 34-145 (298)
174 COG3823 Glutamine cyclotransfe 24.5 4.8E+02 0.01 22.8 7.8 62 163-231 47-110 (262)
175 KOG0278 Serine/threonine kinas 24.4 5.3E+02 0.011 23.2 11.9 81 139-232 206-289 (334)
176 KOG0647 mRNA export protein (c 24.2 5.6E+02 0.012 23.7 8.3 129 33-182 83-220 (347)
177 KOG0294 WD40 repeat-containing 22.6 3.5E+02 0.0076 25.1 6.7 46 317-374 29-74 (362)
178 COG4447 Uncharacterized protei 22.5 5.5E+02 0.012 23.6 7.8 130 148-324 32-165 (339)
179 PRK01742 tolB translocation pr 21.9 7.3E+02 0.016 24.0 18.4 102 91-205 229-331 (429)
180 KOG2321 WD40 repeat protein [G 21.2 8.8E+02 0.019 24.7 13.8 39 247-287 158-198 (703)
181 KOG1036 Mitotic spindle checkp 20.9 6.7E+02 0.015 23.2 11.4 95 116-230 59-153 (323)
182 KOG0291 WD40-repeat-containing 20.2 1E+03 0.022 25.1 18.9 51 189-244 329-379 (893)
183 COG3386 Gluconolactonase [Carb 20.1 7E+02 0.015 23.1 19.6 65 140-205 87-157 (307)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.1e-45 Score=359.89 Aligned_cols=276 Identities=20% Similarity=0.306 Sum_probs=233.5
Q ss_pred CCCC-CCceeeEeecCcccccccccccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEE
Q 016328 66 NGPQ-KGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYN 144 (391)
Q Consensus 66 ~~~r-~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd 144 (391)
..+| ...+.....++....++. .+.+..||+.++.|..+++||.+|..+++++++++|||+||.+.....++++|+||
T Consensus 277 t~~r~~~~~~l~~vGG~~~~~~~-~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 277 TRPRRSVSGKLVAVGGYNRQGQS-LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred cccCcCCCCeEEEECCCCCCCcc-cceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence 4555 344555555554433333 34889999999999999999999999999999999999999995444578899999
Q ss_pred CCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEE
Q 016328 145 FTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRL 224 (391)
Q Consensus 145 ~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 224 (391)
+.+|+|..+++|+. +|..+++++++|.||++||.++... ++++|+|||.+++|+.+++|+.+|++|++++++++|
T Consensus 356 ~~~~~W~~~a~M~~--~R~~~~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNT--KRSDFGVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred CCCCceeccCCccC--ccccceeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 99999999999999 8999999999999999999998765 789999999999999999999999999999999999
Q ss_pred EEEccCCCCc-cCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCC
Q 016328 225 HVMGGSGENR-YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN 303 (391)
Q Consensus 225 yv~GG~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~ 303 (391)
|++||.++.. ...+ +++|||.+++|+.+++|+..|.++++++++++||++||.++..
T Consensus 431 Yi~GG~~~~~~~l~s-------ve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~--------------- 488 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNS-------VECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS--------------- 488 (571)
T ss_pred EEEcCcCCCccccce-------EEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC---------------
Confidence 9999987765 4444 4455699999999999999999999999999999999998732
Q ss_pred ceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCC
Q 016328 304 EVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPF 380 (391)
Q Consensus 304 ~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~ 380 (391)
....+++|| .+++|+.+++|+.+|... ++++++++||++||+++.... +.+.+||+++++|...+.
T Consensus 489 --~~~~VE~ydp~~~~W~~v~~m~~~rs~~--g~~~~~~~ly~vGG~~~~~~l-------~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 489 --ALSSVERYDPETNQWTMVAPMTSPRSAV--GVVVLGGKLYAVGGFDGNNNL-------NTVECYDPETDTWTEVTE 555 (571)
T ss_pred --ccceEEEEcCCCCceeEcccCccccccc--cEEEECCEEEEEecccCcccc-------ceeEEcCCCCCceeeCCC
Confidence 244599999 999999999999888765 558999999999998776543 367888887666654443
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=348.28 Aligned_cols=275 Identities=19% Similarity=0.270 Sum_probs=240.4
Q ss_pred eecCEEEEecCCCC-cccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-ccccccc----ccccccccccccCce
Q 016328 31 LVADFFWASSSKFT-SSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKRI----LPATFQDLPAPELKW 102 (391)
Q Consensus 31 ~~~~~ly~~GG~~~-~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~~----~~~~~~~~d~~~~~W 102 (391)
...+.||++||... ...++.++.|||.+++ ..+.+ +.+|..++++++.+. |+.+|.. ..+.+++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 56789999999886 7788999999999999 77766 778888888888776 6666543 456899999999999
Q ss_pred EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328 103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG 182 (391)
Q Consensus 103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~ 182 (391)
..+++|+.+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+. +|+.+++++.+++||++||.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCC
Confidence 999999999999999999999999999997766 5679999999999999999998 8999999999999999999988
Q ss_pred CCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC
Q 016328 183 PQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI 262 (391)
Q Consensus 183 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 262 (391)
... .++++++|||.+++|+.+++|+.+|.++++++++++||++||.++...... ++.|||++++|+.+++|
T Consensus 439 ~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~-------VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 439 SSN--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSS-------VERYDPETNQWTMVAPM 509 (571)
T ss_pred Ccc--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccce-------EEEEcCCCCceeEcccC
Confidence 763 389999999999999999999999999999999999999999987322222 55667999999999999
Q ss_pred CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCcee
Q 016328 263 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF 334 (391)
Q Consensus 263 p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~ 334 (391)
+..+..+++++++++||++||.++.. +++.+.+|| .+++|+.+.++...+..+++
T Consensus 510 ~~~rs~~g~~~~~~~ly~vGG~~~~~-----------------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~ 565 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGGKLYAVGGFDGNN-----------------NLNTVECYDPETDTWTEVTEPESGRGGAGV 565 (571)
T ss_pred ccccccccEEEECCEEEEEecccCcc-----------------ccceeEEcCCCCCceeeCCCccccccCcce
Confidence 99999999999999999999987664 577799999 99999999985544444333
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-43 Score=345.65 Aligned_cols=259 Identities=16% Similarity=0.193 Sum_probs=217.7
Q ss_pred ccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (391)
Q Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~ 169 (391)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++||. +|..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence 367899999999999999999999999999999999999986444446789999999999999999998 788999999
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCc-cCCCc---------
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEV--------- 239 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~--------- 239 (391)
++++||++||.++... .+++++|||.+++|+.+++||.+|..+++++++++||++||.+... +.+..
T Consensus 350 ~~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTNV---ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCCC---CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 9999999999876542 6889999999999999999999999999999999999999976421 00000
Q ss_pred -cceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-
Q 016328 240 -DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE- 316 (391)
Q Consensus 240 -~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~- 316 (391)
......+++|||++++|+.+++|+.+|..+++++++++||++||.++... ....+++|| .+
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~----------------~~~~ve~Ydp~~~ 490 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN----------------VKTCIFRYNTNTY 490 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc----------------cceeEEEecCCCC
Confidence 01123467888999999999999999999999999999999999864321 123479999 77
Q ss_pred CcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCCc
Q 016328 317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFN 381 (391)
Q Consensus 317 ~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~~ 381 (391)
++|+.+++||.+|.. +++++++|+||++||+++.. .+.+||+.+++|..+...
T Consensus 491 ~~W~~~~~m~~~r~~--~~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 491 NGWELITTTESRLSA--LHTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCeeEccccCccccc--ceeEEECCEEEEEeeeccee----------ehhhcCcccccccchhhh
Confidence 799999999988875 46689999999999998632 578899988888877544
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-40 Score=313.09 Aligned_cols=292 Identities=20% Similarity=0.277 Sum_probs=214.2
Q ss_pred HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEc
Q 016328 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM 105 (391)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 105 (391)
.|+++++++.||++||..... ....+.+++||+.+++|+++
T Consensus 25 ~h~~~~~~~~iyv~GG~~~~~---------------------------------------~~~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 25 SHGIAVVGDKLYSFGGELKPN---------------------------------------EHIDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred cceEEEECCEEEEECCccCCC---------------------------------------CceeCcEEEEECCCCEEEEc
Confidence 799999999999999964311 01223678888899999998
Q ss_pred cCCC-CCcc---CceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC---CCCcceEEEEEeCCEEEEEe
Q 016328 106 KAAP-VPRL---DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVT 178 (391)
Q Consensus 106 ~~~p-~~r~---~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~~~r~~~~~~~~~~~iyv~G 178 (391)
++++ .||. +|++++++++||||||.+.... ++++++||+.+++|+.+++|+. |.+|..|++++.+++|||+|
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G 144 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC
Confidence 8764 4443 7888999999999999876544 5679999999999999887722 44789999999999999999
Q ss_pred CccCCCCC---CCcceeEEEeCCCCceEECCCCC---CCCCCceEEEECCEEEEEccCCCCccCC-CccceEeeeecCCc
Q 016328 179 GQYGPQCR---GPTAHTFVLDTETKKWQDLPPLP---VPRYAPATQLWRGRLHVMGGSGENRYTP-EVDHWSLAVKDGKP 251 (391)
Q Consensus 179 G~~~~~~~---~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~~~~~d~ 251 (391)
|.+..... ..++++++||+++++|+.++++. .+|..|++++++++|||+||........ ........++.||+
T Consensus 145 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred CccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 98643211 12578999999999999998764 7899999999999999999975321000 00001123566789
Q ss_pred ccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCC--
Q 016328 252 LEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM-- 325 (391)
Q Consensus 252 ~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~-- 325 (391)
++++|+.+++ +|.+|..+++++++++||||||...... ........+.+++|+|| ++++|+.+...
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGE 296 (341)
T ss_pred CCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCC
Confidence 9999998864 5778888899999999999999753210 00001223567899999 99999998632
Q ss_pred -CCCCCCc--eeeEEEECCEEEEEccccCCCCcccceeEecceEEEecC
Q 016328 326 -PKPDSHI--EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 371 (391)
Q Consensus 326 -~~~~~~~--~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~ 371 (391)
+.||.++ .++.+.-+++|||+||.+...... .|+|+|+..
T Consensus 297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~------~~~~~~~~~ 339 (341)
T PLN02153 297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERT------DDLYFYAVN 339 (341)
T ss_pred CCCCCccccccccccCCcceEEEEcCcCCCCccc------cceEEEecc
Confidence 4445443 333233345899999998764332 599999764
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=9.3e-39 Score=311.68 Aligned_cols=317 Identities=17% Similarity=0.244 Sum_probs=237.3
Q ss_pred hheecCEEEEecCCCCcccceeEeee--cCCC----Ce-eecCC----CCCCCCceeeEeecC-ccccccc-----cccc
Q 016328 29 FALVADFFWASSSKFTSSYLNIASNW--SPYH----NS-IILPN----NGPQKGENIGVKTKK-DVVPKRI-----LPAT 91 (391)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~--d~~~----~~-~~lp~----~~~r~~~g~~~~~~~-~~~~~~~-----~~~~ 91 (391)
+++.+++|+.|+|+.+.. ++.+..| +|.+ ++ ..+.+ +.||..++.+.+... +..++.. ..+.
T Consensus 116 f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 194 (470)
T PLN02193 116 FVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH 194 (470)
T ss_pred EEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence 344689999999976543 6666556 7655 44 44333 568988888777655 6666542 3357
Q ss_pred ccccccccCceEEccCC---CC-CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEE
Q 016328 92 FQDLPAPELKWEKMKAA---PV-PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLG 166 (391)
Q Consensus 92 ~~~~d~~~~~W~~~~~~---p~-~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~ 166 (391)
+++||+.+++|+.++++ |. +|.+|+++.++++|||+||.+.... ++++++||+.+++|+.+++++. |.+|..|+
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 99999999999988653 43 3568889999999999999876543 6789999999999999988732 34789999
Q ss_pred EEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328 167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS 243 (391)
Q Consensus 167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 243 (391)
+++.+++|||+||.+.... ++++++||+.+++|+.+++ ++.+|..|++++++++||++||..+.. .
T Consensus 274 ~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~------- 342 (470)
T PLN02193 274 MAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-V------- 342 (470)
T ss_pred EEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-c-------
Confidence 9999999999999876543 6889999999999999874 678899999999999999999975421 1
Q ss_pred eeeecCCcccCCceeecCC---CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcE
Q 016328 244 LAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW 319 (391)
Q Consensus 244 ~~~~~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W 319 (391)
..++.||+++++|+.++++ |.+|..+++++++++|||+||....... .......+.++++.|| .+++|
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~--------~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPL--------AHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccc--------cccCccceeccEEEEEcCcCEE
Confidence 2345557999999988654 7778888999999999999998642110 0011123567899999 99999
Q ss_pred EEcCCC------CCCCCCceeeEEEEC--CEEEEEccccCCCCcccceeEecceEEEecCc
Q 016328 320 KVLPSM------PKPDSHIEFAWVLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372 (391)
Q Consensus 320 ~~v~~~------~~~~~~~~~~~~~~~--~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~ 372 (391)
+.++.+ |.+|..++++++.++ +.|+++||.++.... .+|+|+|++++
T Consensus 415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~------~~D~~~~~~~~ 469 (470)
T PLN02193 415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDR------FDDLFFYGIDS 469 (470)
T ss_pred EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcccc------ccceEEEecCC
Confidence 999754 344544433233333 459999999865433 36999998875
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.2e-39 Score=302.02 Aligned_cols=267 Identities=19% Similarity=0.277 Sum_probs=200.4
Q ss_pred cccCceEEccC----CCCCccCceEEEECCEEEEEeccCCC-CCCcceeEEEECCCCCeeeCCCCCC-CCC-cceEEEEE
Q 016328 97 APELKWEKMKA----APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMPR-EMA-HSHLGMVT 169 (391)
Q Consensus 97 ~~~~~W~~~~~----~p~~r~~~~~~~~~~~vyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~-~~~-r~~~~~~~ 169 (391)
+...+|.++.. +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |.. +..+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999976 79999999999999999999998643 3345789999999999999887653 322 34688999
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC-----CCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
++++||||||.+.... .+++++||+++++|+.+++| |.+|..|++++.+++|||+||............+ .
T Consensus 84 ~~~~iyv~GG~~~~~~---~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~ 159 (341)
T PLN02153 84 VGTKLYIFGGRDEKRE---FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R 159 (341)
T ss_pred ECCEEEEECCCCCCCc---cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence 9999999999876543 68999999999999999877 7899999999999999999998643222111112 2
Q ss_pred eeecCCcccCCceeecCCC---CCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEE
Q 016328 245 AVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK 320 (391)
Q Consensus 245 ~~~~~d~~~~~W~~~~~~p---~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~ 320 (391)
.++.||+++++|+.++++. ..|.++++++++++|||+||........ .......+++++|| .+++|+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~g---------G~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPG---------GKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccC---------CccceecCceEEEEcCCCcEE
Confidence 3566789999999987653 6777788899999999999975321000 00011256799999 999999
Q ss_pred EcCC---CCCCCCCceeeEEEECCEEEEEccccCCCC--cccceeEecceEEEecCccccccC
Q 016328 321 VLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLVSAFY 378 (391)
Q Consensus 321 ~v~~---~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~l 378 (391)
+++. +|.+|. .+++++++++|||+||...... ........+++|+||+++.+|..+
T Consensus 231 ~~~~~g~~P~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 231 EVETTGAKPSARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred eccccCCCCCCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 9975 455554 4667899999999999753210 001112346999999988887644
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.5e-39 Score=302.41 Aligned_cols=286 Identities=18% Similarity=0.214 Sum_probs=204.1
Q ss_pred HHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccc--cccCceE
Q 016328 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP--APELKWE 103 (391)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d--~~~~~W~ 103 (391)
.+++|++++.||++||... + .+++|| +.+++|.
T Consensus 10 ~~~~~~~~~~vyv~GG~~~----~-----------------------------------------~~~~~d~~~~~~~W~ 44 (346)
T TIGR03547 10 NGTGAIIGDKVYVGLGSAG----T-----------------------------------------SWYKLDLKKPSKGWQ 44 (346)
T ss_pred CceEEEECCEEEEEccccC----C-----------------------------------------eeEEEECCCCCCCce
Confidence 4667899999999999532 1 233444 3567999
Q ss_pred EccCCC-CCccCceEEEECCEEEEEeccCCCC-----CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE-EeCCEEEE
Q 016328 104 KMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYIYV 176 (391)
Q Consensus 104 ~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~-~~~~~iyv 176 (391)
++++|| .+|..+++++++++|||+||..... ..++++|+||+.+++|+.++. +.|.+|..++++ +.+++||+
T Consensus 45 ~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYv 123 (346)
T TIGR03547 45 KIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYF 123 (346)
T ss_pred ECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEE
Confidence 999999 6899999999999999999985422 246789999999999999873 233367667666 78999999
Q ss_pred EeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCCC-CCCCceEEEECCEE
Q 016328 177 VTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQLWRGRL 224 (391)
Q Consensus 177 ~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~i 224 (391)
+||.+.... ....+++++|||.+++|+.+++||. +|..+++++++++|
T Consensus 124 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~i 203 (346)
T TIGR03547 124 TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKL 203 (346)
T ss_pred EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEE
Confidence 999864210 0013789999999999999999996 78999999999999
Q ss_pred EEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC-------cceeEEEECCEEEEEeCCCCCCCcCCC-CCc
Q 016328 225 HVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG-------PHRACVVVDDRLLVIGGQEGDFMAKPG-SPI 296 (391)
Q Consensus 225 yv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~-------~~~~~~~~~~~i~v~GG~~~~~~~~~~-~~~ 296 (391)
||+||...... ...+ ..++++|+.+++|+.+++||.++ ..+++++++++|||+||.+........ .-.
T Consensus 204 yv~GG~~~~~~-~~~~---~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~ 279 (346)
T TIGR03547 204 LLINGEIKPGL-RTAE---VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGK 279 (346)
T ss_pred EEEeeeeCCCc-cchh---eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCC
Confidence 99999754321 1122 22355678899999999987543 344577899999999998632100000 000
Q ss_pred cccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEec
Q 016328 297 FKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL 370 (391)
Q Consensus 297 ~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~ 370 (391)
.. ..........+.+|| ++++|+.+++||.+|.. +++++++++|||+||.+..+.. .++|+.+..
T Consensus 280 ~~-~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~--~~~~~~~~~iyv~GG~~~~~~~------~~~v~~~~~ 345 (346)
T TIGR03547 280 LY-AHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAY--GVSVSWNNGVLLIGGENSGGKA------VTDVYLLSW 345 (346)
T ss_pred cc-ccCCCCceeEeeEEEecCCcccccCCCCCCcee--eEEEEcCCEEEEEeccCCCCCE------eeeEEEEEe
Confidence 00 000000012355666 78999999999988754 4568899999999999765533 357876653
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=321.24 Aligned_cols=262 Identities=11% Similarity=0.141 Sum_probs=215.1
Q ss_pred EEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecC-ccccccc----ccccccccccccCceEEccC
Q 016328 35 FFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKK-DVVPKRI----LPATFQDLPAPELKWEKMKA 107 (391)
Q Consensus 35 ~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~-~~~~~~~----~~~~~~~~d~~~~~W~~~~~ 107 (391)
.+++.||... .....+++|||.+++ ..+++ +.+|..++++++.+. |..+|.. ..+.+++||+.+++|..+++
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence 4566665322 123468999999999 77776 667777777777666 6666632 23478999999999999999
Q ss_pred CCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCC--
Q 016328 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC-- 185 (391)
Q Consensus 108 ~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~-- 185 (391)
||.+|..+++++++++|||+||.++... ++++++|||.+++|+.+++||. +|..+++++++++|||+||.++...
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPI--ALSSYGMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECCCCCc--ccccccEEEECCEEEEEeCCCcccccc
Confidence 9999999999999999999999875543 5779999999999999999998 7888899999999999999864321
Q ss_pred -------------CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328 186 -------------RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL 252 (391)
Q Consensus 186 -------------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~ 252 (391)
....+.+++|||++++|+.+++|+.+|..+++++++++|||+||.++... ....++.|||+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~ 488 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCC
Confidence 01257899999999999999999999999999999999999999764221 11235677899
Q ss_pred c-CCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC
Q 016328 253 E-KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP 326 (391)
Q Consensus 253 ~-~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~ 326 (391)
+ ++|+.+++||..|..+++++++++||++||.++. ..+.+|| .+++|+.+++..
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred CCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchhhhc
Confidence 9 8999999999999999999999999999998742 1478999 999999998643
No 9
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.1e-38 Score=306.47 Aligned_cols=256 Identities=23% Similarity=0.306 Sum_probs=200.6
Q ss_pred ccccccc----CceEEccC---CCCCccCceEEEECCEEEEEeccCCCC-CCcceeEEEECCCCCeeeCCCCC-CCC-Cc
Q 016328 93 QDLPAPE----LKWEKMKA---APVPRLDGAAIQIKNLLYVFAGYGSID-YVHSHVDIYNFTDNTWGGRFDMP-REM-AH 162 (391)
Q Consensus 93 ~~~d~~~----~~W~~~~~---~p~~r~~~~~~~~~~~vyv~GG~~~~~-~~~~~~~~yd~~~~~W~~~~~~p-~~~-~r 162 (391)
+.+++.+ ++|.++.+ +|.||.+|+++.++++|||+||..... ...+++++||+.+++|+.++.+. .|. +|
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~ 219 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSC 219 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcc
Confidence 3446544 79999876 588999999999999999999986433 34467999999999999876542 222 35
Q ss_pred ceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC---CCCCCCceEEEECCEEEEEccCCCCccCCCc
Q 016328 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTPEV 239 (391)
Q Consensus 163 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 239 (391)
..++++.++++||||||.+.... ++++++||+.+++|+.++++ |.+|..|++++++++|||+||........+
T Consensus 220 ~~~~~v~~~~~lYvfGG~~~~~~---~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~- 295 (470)
T PLN02193 220 LGVRMVSIGSTLYVFGGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT- 295 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCC---CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce-
Confidence 67889999999999999876543 78999999999999999887 889999999999999999999865433322
Q ss_pred cceEeeeecCCcccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-C
Q 016328 240 DHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D 315 (391)
Q Consensus 240 ~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~ 315 (391)
++.||+.+++|+.+++ +|..|..+++++++++||++||.++. ..+++++|| .
T Consensus 296 ------~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~~ 351 (470)
T PLN02193 296 ------LDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDPV 351 (470)
T ss_pred ------EEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEECC
Confidence 3455699999998764 56677778899999999999997543 246799999 9
Q ss_pred cCcEEEcCCC---CCCCCCceeeEEEECCEEEEEccccCCCCc--ccceeEecceEEEecCccccccC
Q 016328 316 EMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLVSAFY 378 (391)
Q Consensus 316 ~~~W~~v~~~---~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~--~~~~~~~~~v~~~d~~~~~~~~l 378 (391)
+++|+.++++ |.+|. .++++.++++|||+||....... .......+++|+||+++++|..+
T Consensus 352 t~~W~~~~~~g~~P~~R~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 352 QDKWTQVETFGVRPSERS--VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCEEEEeccCCCCCCCcc--eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 9999999765 55554 45668999999999998652211 11113456899999998887754
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.2e-38 Score=295.08 Aligned_cols=283 Identities=20% Similarity=0.272 Sum_probs=204.2
Q ss_pred HHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccc-cc-cCc
Q 016328 24 VMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP-AP-ELK 101 (391)
Q Consensus 24 ~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d-~~-~~~ 101 (391)
++.|.+++++++||++||.+.... | +. ..+.....++++.|+ +. +.+
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~--------~------~~-----------------~~g~~~~~~~v~~~~~~~~~~~ 52 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPED--------P------LA-----------------EGGKKKNYKGIYIAKDENSNLK 52 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCC--------c------hh-----------------hCCcEEeeeeeEEEecCCCcee
Confidence 456889999999999999654221 0 00 001111222555553 33 237
Q ss_pred eEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCe----eeCCCCCCCCCcceEEEEEeCCEEEEE
Q 016328 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW----GGRFDMPREMAHSHLGMVTDGRYIYVV 177 (391)
Q Consensus 102 W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~~~r~~~~~~~~~~~iyv~ 177 (391)
|..+++||.+|..+++++++++||++||.+.... ++++++||+.+++| +.+++||. +|..+++++++++|||+
T Consensus 53 W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 53 WVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPF--TFENGSACYKDGTLYVG 129 (323)
T ss_pred EEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCc--CccCceEEEECCEEEEE
Confidence 9999999999999999999999999999876544 57899999999998 67888887 67788999999999999
Q ss_pred eCccCCCCCCCcceeEEEeCCCCceEECCCCC-CCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCc
Q 016328 178 TGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW 256 (391)
Q Consensus 178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W 256 (391)
||..... ..+++++||+++++|+.+++|| .+|..|++++++++|||+||.+.... ..++.||+++++|
T Consensus 130 GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~--------~~~~~yd~~~~~W 198 (323)
T TIGR03548 130 GGNRNGK---PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY--------TDGYKYSPKKNQW 198 (323)
T ss_pred eCcCCCc---cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc--------cceEEEecCCCee
Confidence 9975433 2789999999999999999988 58999999999999999999764221 1235667999999
Q ss_pred eeecCC-----CCCCccee-EEEECCEEEEEeCCCCCCCcC----------CCCCccc-----cCcCCceecCcEEEEc-
Q 016328 257 RTEIPI-----PRGGPHRA-CVVVDDRLLVIGGQEGDFMAK----------PGSPIFK-----CSRRNEVVYDDVYMLD- 314 (391)
Q Consensus 257 ~~~~~~-----p~~~~~~~-~~~~~~~i~v~GG~~~~~~~~----------~~~~~~~-----~~~~~~~~~~~v~~~d- 314 (391)
+.++++ |+.+..++ +++.+++|||+||.+.....+ ...+... .....-.+.+++++||
T Consensus 199 ~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 278 (323)
T TIGR03548 199 QKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV 278 (323)
T ss_pred EECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC
Confidence 998765 33333333 345579999999986421000 0000000 0000011246799999
Q ss_pred CcCcEEEcCCCC-CCCCCceeeEEEECCEEEEEccccCCC
Q 016328 315 DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKH 353 (391)
Q Consensus 315 ~~~~W~~v~~~~-~~~~~~~~~~~~~~~~l~i~GG~~~~~ 353 (391)
.+++|+.++++| .+|. .++++.++++||++||....+
T Consensus 279 ~~~~W~~~~~~p~~~r~--~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 279 RTGKWKSIGNSPFFARC--GAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCCeeeEcccccccccC--chheEEECCEEEEEeccccCC
Confidence 999999999876 3444 456789999999999986544
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.2e-37 Score=293.54 Aligned_cols=261 Identities=18% Similarity=0.187 Sum_probs=187.4
Q ss_pred cCceEEccCCC-CCccCceEEEECCEEEEEeccCCC-----CCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eC
Q 016328 99 ELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DG 171 (391)
Q Consensus 99 ~~~W~~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~ 171 (391)
+++|.+++++| .+|.+++++.++++|||+||.... ...++++++||+.+++|+.++++ .|.++..|++++ .+
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~ 139 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHN 139 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeC
Confidence 57899999998 589999999999999999998641 12457899999999999999853 233666676666 89
Q ss_pred CEEEEEeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCCC-CCCCceEEE
Q 016328 172 RYIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQL 219 (391)
Q Consensus 172 ~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~ 219 (391)
++|||+||.+.... ....+++++||+.+++|+.++++|. +|..++++.
T Consensus 140 ~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~ 219 (376)
T PRK14131 140 GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI 219 (376)
T ss_pred CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE
Confidence 99999999753200 0014789999999999999999996 788899999
Q ss_pred ECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCc--------ceeEEEECCEEEEEeCCCCCCCcC
Q 016328 220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAK 291 (391)
Q Consensus 220 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~--------~~~~~~~~~~i~v~GG~~~~~~~~ 291 (391)
++++|||+||...... ...+.| .+++|+++++|+.+++||.++. ++.+++++++|||+||.+......
T Consensus 220 ~~~~iYv~GG~~~~~~-~~~~~~---~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~ 295 (376)
T PRK14131 220 KGNKLWLINGEIKPGL-RTDAVK---QGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARE 295 (376)
T ss_pred ECCEEEEEeeeECCCc-CChhhe---EEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChh
Confidence 9999999999743221 223333 3456789999999998876542 233578899999999986421000
Q ss_pred CC-CCccccCc-CCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEE
Q 016328 292 PG-SPIFKCSR-RNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368 (391)
Q Consensus 292 ~~-~~~~~~~~-~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~ 368 (391)
.. .-...... ...+ ..++.|| ++++|+.+++||.+|.. ++++.++++|||+||....... .+++++|
T Consensus 296 ~~~~~~~~~~~~~~~~--~~~e~yd~~~~~W~~~~~lp~~r~~--~~av~~~~~iyv~GG~~~~~~~------~~~v~~~ 365 (376)
T PRK14131 296 NYQNGKLYAHEGLKKS--WSDEIYALVNGKWQKVGELPQGLAY--GVSVSWNNGVLLIGGETAGGKA------VSDVTLL 365 (376)
T ss_pred hhhcCCcccccCCcce--eehheEEecCCcccccCcCCCCccc--eEEEEeCCEEEEEcCCCCCCcE------eeeEEEE
Confidence 00 00000000 0001 1245566 88999999999998865 4568899999999998654422 3589888
Q ss_pred ecCccc
Q 016328 369 NLNTLV 374 (391)
Q Consensus 369 d~~~~~ 374 (391)
++....
T Consensus 366 ~~~~~~ 371 (376)
T PRK14131 366 SWDGKK 371 (376)
T ss_pred EEcCCE
Confidence 876544
No 12
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-38 Score=266.54 Aligned_cols=274 Identities=19% Similarity=0.340 Sum_probs=220.1
Q ss_pred CceehhHHHHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccc
Q 016328 15 PARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQD 94 (391)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (391)
++|+ .||++.++++||-|||.-.... | ...+.+ ++..
T Consensus 12 PrRV-------NHAavaVG~riYSFGGYCsGed------y----------------------------~~~~pi--DVH~ 48 (392)
T KOG4693|consen 12 PRRV-------NHAAVAVGSRIYSFGGYCSGED------Y----------------------------DAKDPI--DVHV 48 (392)
T ss_pred cccc-------cceeeeecceEEecCCcccccc------c----------------------------ccCCcc--eeEE
Confidence 5677 8999999999999999553321 1 001111 5666
Q ss_pred cccccCceEEccC-------------CCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeC---CCCCC
Q 016328 95 LPAPELKWEKMKA-------------APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR---FDMPR 158 (391)
Q Consensus 95 ~d~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~ 158 (391)
+|..+.+|+++++ .|..|.+|+++.+++++||.||.++....-+-+++||+++++|++. ..+|.
T Consensus 49 lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg 128 (392)
T KOG4693|consen 49 LNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG 128 (392)
T ss_pred eeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCC
Confidence 6777777777654 3667999999999999999999988776678899999999999984 24555
Q ss_pred CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCC--
Q 016328 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGEN-- 233 (391)
Q Consensus 159 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~-- 233 (391)
+|.+|+++++++.+|||||+..... ...++++.+|..|.+|+.+. ..|.=|..|+++++++.+|||||+.+.
T Consensus 129 --aRDGHsAcV~gn~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 129 --ARDGHSACVWGNQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG 205 (392)
T ss_pred --ccCCceeeEECcEEEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCC
Confidence 8999999999999999999965532 23789999999999999986 345568899999999999999998653
Q ss_pred ccCCCccceEeeeecCCcccCCceeecC---CCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcE
Q 016328 234 RYTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV 310 (391)
Q Consensus 234 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (391)
.+....+.|.-.+..+|.++..|...++ .|.+|..|++.+.+++||+|||+++.- ....+|+
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndL 270 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDL 270 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcce
Confidence 2444567777777788999999998754 588999999999999999999998642 2357899
Q ss_pred EEEc-CcCcEEEcCC---CCCCCCCceeeEEEECCEEEEEccccC
Q 016328 311 YMLD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTE 351 (391)
Q Consensus 311 ~~~d-~~~~W~~v~~---~~~~~~~~~~~~~~~~~~l~i~GG~~~ 351 (391)
|+|| .+..|+.|.. -|.+|.+. ++++.++++|+|||...
T Consensus 271 y~FdP~t~~W~~I~~~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGKYPSARRRQ--CSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eecccccchheeeeccCCCCCcccce--eEEEECCEEEEecCCCC
Confidence 9999 8999999953 57777774 55899999999999875
No 13
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=305.68 Aligned_cols=263 Identities=20% Similarity=0.268 Sum_probs=213.1
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~ 170 (391)
.+..|++.+++|..++++|. +..+++++++++|||+||.+......+++++||+.+++|..+++||. +|..++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEE
Confidence 35578888889998877664 44578899999999999998766666789999999999999999987 6889999999
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK 250 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d 250 (391)
+++||++||.+... ..+++++||+.+++|+.+++||.+|..|++++++++|||+||....... ...++.||
T Consensus 342 ~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~------~~~v~~yd 412 (534)
T PHA03098 342 NNRIYVIGGIYNSI---SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL------LKTVECFS 412 (534)
T ss_pred CCEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc------cceEEEEe
Confidence 99999999987433 2788999999999999999999999999999999999999997432111 12345567
Q ss_pred cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328 251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD 329 (391)
Q Consensus 251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~ 329 (391)
+.+++|+.++++|.++.++++++.+++||++||.+.... ....++++.|| .+++|+.+++++.+|
T Consensus 413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~r 478 (534)
T PHA03098 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFPR 478 (534)
T ss_pred CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCccc
Confidence 999999999999999988999999999999999864321 00234599999 899999999998887
Q ss_pred CCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccccCCCccccccee
Q 016328 330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAFYPFNILCHPHV 388 (391)
Q Consensus 330 ~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~lp~~~~~~~~~ 388 (391)
..+ +++..+++||++||.+.... .+++++||+++.+|..++..-..-+.+
T Consensus 479 ~~~--~~~~~~~~iyv~GG~~~~~~-------~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 479 INA--SLCIFNNKIYVVGGDKYEYY-------INEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred ccc--eEEEECCEEEEEcCCcCCcc-------cceeEEEeCCCCEEEecCCCcccccce
Confidence 654 55778999999999875432 247999999988887666543333433
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=301.38 Aligned_cols=237 Identities=16% Similarity=0.312 Sum_probs=199.0
Q ss_pred HHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEcc
Q 016328 27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK 106 (391)
Q Consensus 27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 106 (391)
|+++++++.||++||...... ..+.++.||+.+++|..++
T Consensus 288 ~~~~~~~~~lyv~GG~~~~~~----------------------------------------~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 288 FGSVVLNNVIYFIGGMNKNNL----------------------------------------SVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred ceEEEECCEEEEECCCcCCCC----------------------------------------eeccEEEEeCCCCeeeECC
Confidence 588899999999999654221 1236788899999999999
Q ss_pred CCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCC
Q 016328 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR 186 (391)
Q Consensus 107 ~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 186 (391)
+||.+|..|+++.++++|||+||.+... .++++++||+.+++|+.+++||. +|..++++.++++|||+||......
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~- 403 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIF--PRYNPCVVNVNNLIYVIGGISKNDE- 403 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCc--CCccceEEEECCEEEEECCcCCCCc-
Confidence 9999999999999999999999987443 46789999999999999999988 7889999999999999999754432
Q ss_pred CCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC
Q 016328 187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG 266 (391)
Q Consensus 187 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~ 266 (391)
.++++++||+.+++|+.++++|.+|..|++++++++|||+||...... ...++ .++.||+.+++|+.++++|.++
T Consensus 404 -~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~-~v~~yd~~~~~W~~~~~~~~~r 478 (534)
T PHA03098 404 -LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN---IKVYN-IVESYNPVTNKWTELSSLNFPR 478 (534)
T ss_pred -ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC---Ccccc-eEEEecCCCCceeeCCCCCccc
Confidence 268999999999999999999999999999999999999999764321 11222 2677889999999999998888
Q ss_pred cceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCC
Q 016328 267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD 329 (391)
Q Consensus 267 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~ 329 (391)
..+++++++++||++||.+... ..++++.|| .+++|+.++.+|...
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccc
Confidence 8889999999999999987432 256799999 999999998766543
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5e-36 Score=283.19 Aligned_cols=264 Identities=19% Similarity=0.306 Sum_probs=195.7
Q ss_pred ccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEEC--CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328 105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF--TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG 182 (391)
Q Consensus 105 ~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~ 182 (391)
+++||.+|..+++++++++|||+||... +++++||+ .+++|..+++||.. +|..+++++++++|||+||...
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence 4789999999999899999999999742 46899996 57899999999842 6888999999999999999854
Q ss_pred CC---CCCCcceeEEEeCCCCceEECC-CCCCCCCCceEE-EECCEEEEEccCCCCcc---CCCc---------------
Q 016328 183 PQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGSGENRY---TPEV--------------- 239 (391)
Q Consensus 183 ~~---~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~---~~~~--------------- 239 (391)
.. ....++++|+||+.+++|+.++ ++|.+|..++++ +++++||++||.....+ ....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 22 1113688999999999999997 567778778776 79999999999863210 0000
Q ss_pred ---------cceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328 240 ---------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309 (391)
Q Consensus 240 ---------~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (391)
..+...++.|||.+++|+.+++||. .+.++++++++++|||+||...... ...+
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~ 218 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL----------------RTAE 218 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc----------------cchh
Confidence 0112346778899999999999985 5777888999999999999853210 1223
Q ss_pred E--EEEc-CcCcEEEcCCCCCCCC-----CceeeEEEECCEEEEEccccCCCCc----------c--cceeEecceEEEe
Q 016328 310 V--YMLD-DEMKWKVLPSMPKPDS-----HIEFAWVLVNNSIVIVGGTTEKHPT----------T--KKMVLVGEIFQFN 369 (391)
Q Consensus 310 v--~~~d-~~~~W~~v~~~~~~~~-----~~~~~~~~~~~~l~i~GG~~~~~~~----------~--~~~~~~~~v~~~d 369 (391)
+ |+|| .+++|+.+++||.+|. +.++++++++++|||+||.+..... . .......++|.++
T Consensus 219 ~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~ 298 (346)
T TIGR03547 219 VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298 (346)
T ss_pred eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence 4 5555 6789999999988763 2345567899999999998632110 0 0001234677666
Q ss_pred cCccc-cccCCCcccccceeec
Q 016328 370 LNTLV-SAFYPFNILCHPHVKC 390 (391)
Q Consensus 370 ~~~~~-~~~lp~~~~~~~~~~~ 390 (391)
.++|+ ...||.++..|+++.+
T Consensus 299 ~~~W~~~~~lp~~~~~~~~~~~ 320 (346)
T TIGR03547 299 NGKWSKVGKLPQGLAYGVSVSW 320 (346)
T ss_pred CCcccccCCCCCCceeeEEEEc
Confidence 67777 6789999888877654
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4e-36 Score=293.93 Aligned_cols=190 Identities=19% Similarity=0.306 Sum_probs=167.1
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~ 170 (391)
.+++||+.+++|..+++||.+|..++++.++++||++||.+.. +++++||+.+++|+.+++||. +|..++++++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~~~ 361 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVASI 361 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEEEE
Confidence 5667788888999999999999999999999999999998532 469999999999999999998 7888999999
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCC
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK 250 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d 250 (391)
+++|||+||.++. .+.+++|||++++|+.+++|+.+|..+++++++++|||+||. .+ .||
T Consensus 362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e-------~yd 421 (480)
T PHA02790 362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AE-------FYC 421 (480)
T ss_pred CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eE-------Eec
Confidence 9999999997542 367899999999999999999999999999999999999983 22 346
Q ss_pred cccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC
Q 016328 251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP 323 (391)
Q Consensus 251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~ 323 (391)
|++++|+.+++|+.+|..+++++++++||++||.++.. ..+.+++|| .+++|+...
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEecC
Confidence 89999999999999999999999999999999986432 235689999 999998754
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=287.96 Aligned_cols=212 Identities=18% Similarity=0.301 Sum_probs=179.1
Q ss_pred EEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (391)
Q Consensus 117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (391)
++.+++.||++||.+... ..+++++||+.+++|..+++|+. +|..+++++.+++||++||.++ .+++++||
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~------~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPN------PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence 455899999999986543 35679999999999999999988 7888899999999999999753 35689999
Q ss_pred CCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECC
Q 016328 197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276 (391)
Q Consensus 197 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~ 276 (391)
|.+++|+.+++||.+|..+++++++++||++||.... ... ++.|||.+++|+.+++|+.++..++++++++
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~-------ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTT-------TEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Ccc-------EEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 9999999999999999999999999999999997532 122 3455799999999999999998889999999
Q ss_pred EEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCc
Q 016328 277 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT 355 (391)
Q Consensus 277 ~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~ 355 (391)
+||++||. +..|| .+++|+.+++|+.+|..+ ++++++|+||++||++....
T Consensus 409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~- 460 (480)
T PHA02790 409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSY- 460 (480)
T ss_pred EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcc-
Confidence 99999984 35677 899999999999888764 56899999999999874321
Q ss_pred ccceeEecceEEEecCccccccCCC
Q 016328 356 TKKMVLVGEIFQFNLNTLVSAFYPF 380 (391)
Q Consensus 356 ~~~~~~~~~v~~~d~~~~~~~~lp~ 380 (391)
.+.+++||+++++|..+.+
T Consensus 461 ------~~~ve~Yd~~~~~W~~~~~ 479 (480)
T PHA02790 461 ------IDTIEVYNNRTYSWNIWDG 479 (480)
T ss_pred ------cceEEEEECCCCeEEecCC
Confidence 1368999998888876654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.9e-34 Score=274.51 Aligned_cols=268 Identities=19% Similarity=0.259 Sum_probs=197.9
Q ss_pred ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECC--CCCeeeCCCCCCCCCcceEEEEEeCCEEEEEe
Q 016328 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178 (391)
Q Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~G 178 (391)
.++.+++||.||..+++++++++|||+||... +.+++||+. +++|..++++|.+ +|..++++.++++|||+|
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~G 91 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFG 91 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEc
Confidence 57889999999998899999999999999743 348899987 4789999998753 688889999999999999
Q ss_pred CccCC-C--CCCCcceeEEEeCCCCceEECCC-CCCCCCCceEEE-ECCEEEEEccCCCCccC-----------------
Q 016328 179 GQYGP-Q--CRGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENRYT----------------- 236 (391)
Q Consensus 179 G~~~~-~--~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~----------------- 236 (391)
|.... . ....++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.....+.
T Consensus 92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 98641 1 11236889999999999999985 467777788776 89999999997532100
Q ss_pred --------CC--ccceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCce
Q 016328 237 --------PE--VDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV 305 (391)
Q Consensus 237 --------~~--~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
.. ...+...++.|||.+++|+.++++|. .+.+++++.++++|||+||......
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~---------------- 235 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL---------------- 235 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc----------------
Confidence 00 00123457788899999999999986 6777888899999999999753310
Q ss_pred ecCcE--EEEc-CcCcEEEcCCCCCCCCC------ceeeEEEECCEEEEEccccCCCCc---------c---cceeEecc
Q 016328 306 VYDDV--YMLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT---------T---KKMVLVGE 364 (391)
Q Consensus 306 ~~~~v--~~~d-~~~~W~~v~~~~~~~~~------~~~~~~~~~~~l~i~GG~~~~~~~---------~---~~~~~~~~ 364 (391)
-..++ ++|| ++++|+.+++||.+|.. +++.+++++++|||+||.+..... . .......+
T Consensus 236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e 315 (376)
T PRK14131 236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDE 315 (376)
T ss_pred CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehh
Confidence 12234 4567 78999999999887632 233357899999999998643210 0 00011235
Q ss_pred eEEEecCccc-cccCCCcccccceeec
Q 016328 365 IFQFNLNTLV-SAFYPFNILCHPHVKC 390 (391)
Q Consensus 365 v~~~d~~~~~-~~~lp~~~~~~~~~~~ 390 (391)
+|.++.++|+ ...||.+|..|.+|.+
T Consensus 316 ~yd~~~~~W~~~~~lp~~r~~~~av~~ 342 (376)
T PRK14131 316 IYALVNGKWQKVGELPQGLAYGVSVSW 342 (376)
T ss_pred eEEecCCcccccCcCCCCccceEEEEe
Confidence 5555556666 6789999999887754
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.1e-34 Score=265.38 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=187.1
Q ss_pred CccCceEEEECCEEEEEeccCCCCC---------CcceeEEEE-CCC-CCeeeCCCCCCCCCcceEEEEEeCCEEEEEeC
Q 016328 111 PRLDGAAIQIKNLLYVFAGYGSIDY---------VHSHVDIYN-FTD-NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG 179 (391)
Q Consensus 111 ~r~~~~~~~~~~~vyv~GG~~~~~~---------~~~~~~~yd-~~~-~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG 179 (391)
.++++.++++++.|||+||.+..+. ..+++++|+ +.. .+|..+++||. +|..+++++++++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~--~r~~~~~~~~~~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY--EAAYGASVSVENGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc--cccceEEEEECCEEEEEcC
Confidence 4678889999999999999865432 235688886 332 27999999988 6766777888999999999
Q ss_pred ccCCCCCCCcceeEEEeCCCCce----EECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCC
Q 016328 180 QYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255 (391)
Q Consensus 180 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~ 255 (391)
.++... ++++++||+.+++| +.+++||.+|..|++++++++|||+||....... ..++.||+.+++
T Consensus 81 ~~~~~~---~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~-------~~v~~yd~~~~~ 150 (323)
T TIGR03548 81 SNSSER---FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPS-------NKSYLFNLETQE 150 (323)
T ss_pred CCCCCC---ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccC-------ceEEEEcCCCCC
Confidence 876443 78999999999998 7889999999999999999999999997533222 235666799999
Q ss_pred ceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC---CCCC
Q 016328 256 WRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP---KPDS 330 (391)
Q Consensus 256 W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~---~~~~ 330 (391)
|+.++++|. .|..+++++++++|||+||.+.. ...++++|| .+++|+.+++++ .|+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI------------------AYTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCc------------------cccceEEEecCCCeeEECCCCCCCCCcee
Confidence 999998874 67777888999999999998533 134578999 899999998763 4444
Q ss_pred Cce-eeEEEECCEEEEEccccCCCCc-------------------------ccceeEecceEEEecCcccccc---CC-C
Q 016328 331 HIE-FAWVLVNNSIVIVGGTTEKHPT-------------------------TKKMVLVGEIFQFNLNTLVSAF---YP-F 380 (391)
Q Consensus 331 ~~~-~~~~~~~~~l~i~GG~~~~~~~-------------------------~~~~~~~~~v~~~d~~~~~~~~---lp-~ 380 (391)
+.. ++++..+++|||+||.+..... .....+.+++++||+.+++|.. +| .
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 292 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF 292 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc
Confidence 433 3345557999999998742100 0000123579999998777764 44 4
Q ss_pred cccccceeec
Q 016328 381 NILCHPHVKC 390 (391)
Q Consensus 381 ~~~~~~~~~~ 390 (391)
+|..++.+.+
T Consensus 293 ~r~~~~~~~~ 302 (323)
T TIGR03548 293 ARCGAALLLT 302 (323)
T ss_pred ccCchheEEE
Confidence 5666665543
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=241.79 Aligned_cols=268 Identities=19% Similarity=0.291 Sum_probs=209.2
Q ss_pred ceEEccCCCCCccCceEEEECCEEEEEeccCCCCC----CcceeEEEECCCCCeeeCCC--------C--C-CCCCcceE
Q 016328 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY----VHSHVDIYNFTDNTWGGRFD--------M--P-REMAHSHL 165 (391)
Q Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~----~~~~~~~yd~~~~~W~~~~~--------~--p-~~~~r~~~ 165 (391)
+|+.-=+--..|-.|+++.++++||-|||+..... .--+++++|..+-+|+++++ . | .|..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 46543233345789999999999999999843221 12359999999999999865 1 1 15579999
Q ss_pred EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCCccCCCccce
Q 016328 166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW 242 (391)
Q Consensus 166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 242 (391)
+++.+++++||.||++..... -+.+++|||++++|.... -+|.+|.+|+++++++.+|||||+.+ +.++|
T Consensus 83 tvV~y~d~~yvWGGRND~ega--CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~F 155 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGA--CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQRF 155 (392)
T ss_pred eEEEEcceEEEEcCccCcccc--cceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH-----HHHhh
Confidence 999999999999999875433 688999999999999874 68899999999999999999999754 35556
Q ss_pred EeeeecCCcccCCceee---cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc
Q 016328 243 SLAVKDGKPLEKEWRTE---IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK 318 (391)
Q Consensus 243 ~~~~~~~d~~~~~W~~~---~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~ 318 (391)
+.+++.+|..+++|+.+ ...|+-|-.|+++++++.+|||||.....+. ...-.+.+.++|..+| .+..
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~ld~~T~a 227 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMALDLATGA 227 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEEEeccccc
Confidence 66666677899999986 4568888889999999999999998765421 0122455788899999 9999
Q ss_pred EEEcCCC---CCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccccc------cCCCcccccceee
Q 016328 319 WKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSA------FYPFNILCHPHVK 389 (391)
Q Consensus 319 W~~v~~~---~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~------~lp~~~~~~~~~~ 389 (391)
|+.-++. |..|. +|++.++|++||+|||+++.-... .+|+|+||+++..|. +-|.+|..|+|+.
T Consensus 228 W~r~p~~~~~P~GRR--SHS~fvYng~~Y~FGGYng~ln~H-----fndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v 300 (392)
T KOG4693|consen 228 WTRTPENTMKPGGRR--SHSTFVYNGKMYMFGGYNGTLNVH-----FNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV 300 (392)
T ss_pred cccCCCCCcCCCccc--ccceEEEcceEEEecccchhhhhh-----hcceeecccccchheeeeccCCCCCcccceeEEE
Confidence 9987653 44443 567799999999999998753222 369999999887775 4588888888875
Q ss_pred c
Q 016328 390 C 390 (391)
Q Consensus 390 ~ 390 (391)
.
T Consensus 301 ~ 301 (392)
T KOG4693|consen 301 S 301 (392)
T ss_pred E
Confidence 3
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=9.4e-28 Score=233.82 Aligned_cols=268 Identities=20% Similarity=0.271 Sum_probs=205.4
Q ss_pred HHHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCc
Q 016328 22 IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK 101 (391)
Q Consensus 22 ~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 101 (391)
.++..|+++++++.+|++||......+.. .+++.+|..+..
T Consensus 59 ~~R~~hs~~~~~~~~~vfGG~~~~~~~~~---------------------------------------~dl~~~d~~~~~ 99 (482)
T KOG0379|consen 59 IPRAGHSAVLIGNKLYVFGGYGSGDRLTD---------------------------------------LDLYVLDLESQL 99 (482)
T ss_pred chhhccceeEECCEEEEECCCCCCCcccc---------------------------------------ceeEEeecCCcc
Confidence 44569999999999999999554332111 046677777778
Q ss_pred eEEcc---CCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEEeCCEEEEE
Q 016328 102 WEKMK---AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVV 177 (391)
Q Consensus 102 W~~~~---~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~~~~~iyv~ 177 (391)
|.... ..|.+|.+|.++.++++||+|||.+......++++.||+.+++|+.+..... |.+|.+|++++.+++||||
T Consensus 100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vf 179 (482)
T KOG0379|consen 100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVF 179 (482)
T ss_pred cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEE
Confidence 87763 4578999999999999999999998644457889999999999999866555 6689999999999999999
Q ss_pred eCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCC-CCccCCCccceEeeeecCCccc
Q 016328 178 TGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHWSLAVKDGKPLE 253 (391)
Q Consensus 178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~~~d~~~ 253 (391)
||.+.... ..++++.||+++.+|+++. +.|.||++|++++++++++||||.. ...+.. +++.+|..+
T Consensus 180 GG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~-------D~~~ldl~~ 250 (482)
T KOG0379|consen 180 GGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN-------DVHILDLST 250 (482)
T ss_pred CCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec-------ceEeeeccc
Confidence 99987663 3899999999999999985 6788999999999999999999987 333333 344556788
Q ss_pred CCceeec---CCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCC---
Q 016328 254 KEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP--- 326 (391)
Q Consensus 254 ~~W~~~~---~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~--- 326 (391)
.+|..++ ..|.+|..|+.+..+++++++||..... ...+.++|.|| ++..|+.+....
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~~~~~~~~~~ 315 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWSKVESVGVVR 315 (482)
T ss_pred ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------cccccccccccccccceeeeecccccc
Confidence 9999654 4678888899999999999999986531 01367899999 999999996543
Q ss_pred -CCCCCceeeEEEEC--CEEEEEccccCC
Q 016328 327 -KPDSHIEFAWVLVN--NSIVIVGGTTEK 352 (391)
Q Consensus 327 -~~~~~~~~~~~~~~--~~l~i~GG~~~~ 352 (391)
.++..+........ ....++||....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (482)
T KOG0379|consen 316 PSPRLGHAAELIDELGKDGLGILGGNQIL 344 (482)
T ss_pred ccccccccceeeccCCccceeeecCcccc
Confidence 44444333222222 234555554433
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=229.65 Aligned_cols=251 Identities=26% Similarity=0.434 Sum_probs=197.0
Q ss_pred CCCCCccCceEEEECCEEEEEeccCCCCCCcc-eeEEEECCCCCeeeCCCC-CCCCCcceEEEEEeCCEEEEEeCccCCC
Q 016328 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS-HVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQ 184 (391)
Q Consensus 107 ~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~-~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~~~~~iyv~GG~~~~~ 184 (391)
..|.+|..|+++.+++++|||||........+ +++++|..+..|...... ..|.+|+.|.++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 46888999999999999999999876555333 599999999999985432 2245899999999999999999998632
Q ss_pred CCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceee--
Q 016328 185 CRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-- 259 (391)
Q Consensus 185 ~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-- 259 (391)
..+++++.||+.|.+|+.+. ..|.+|.+|++++++++||||||.....- +..+++.||+++.+|.++
T Consensus 136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceeccc
Confidence 23789999999999999986 56899999999999999999999864321 344566778999999986
Q ss_pred -cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCC---CCCCCCCcee
Q 016328 260 -IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEF 334 (391)
Q Consensus 260 -~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~---~~~~~~~~~~ 334 (391)
.+.|.+|.+|++++.++++++|||.+.. +.+++|+|.|| .+.+|..+.+ +|.||.. |
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~--h 269 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG--H 269 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCcce--e
Confidence 4557788889999999999999998722 22789999999 8999997653 4666654 5
Q ss_pred eEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccccc-------CCCccccccee
Q 016328 335 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAF-------YPFNILCHPHV 388 (391)
Q Consensus 335 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-------lp~~~~~~~~~ 388 (391)
..+..+.+++|+||...... ....++|.|+..+..|.. .|.++..|..+
T Consensus 270 ~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~ 325 (482)
T KOG0379|consen 270 SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAE 325 (482)
T ss_pred eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeeccccccccccccccce
Confidence 66799999999999886411 023589999997555543 34455555443
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=8.5e-28 Score=215.52 Aligned_cols=260 Identities=19% Similarity=0.296 Sum_probs=197.6
Q ss_pred cCCCCCccCceEEEE--CCEEEEEecc--CCCC-CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeC
Q 016328 106 KAAPVPRLDGAAIQI--KNLLYVFAGY--GSID-YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTG 179 (391)
Q Consensus 106 ~~~p~~r~~~~~~~~--~~~vyv~GG~--~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG 179 (391)
-+.|.||.++++... .+.|++|||. ++.. .+-++++.||..+++|+.+.....|.+|+.|.++++ .|.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 356899999998765 4589999996 3322 356789999999999999876666668888877766 489999999
Q ss_pred ccCCC---CCCCcceeEEEeCCCCceEECC--CCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328 180 QYGPQ---CRGPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (391)
Q Consensus 180 ~~~~~---~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 254 (391)
....- ......++|.||..+++|+++. .-|.||++|.+++...+|++|||+.+. +..-.|-.++|+||..+=
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdty 217 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDTY 217 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccce
Confidence 75432 2223689999999999999985 678999999999999999999999764 334556667888889999
Q ss_pred CceeecC---CCCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-----CcEEEcCC
Q 016328 255 EWRTEIP---IPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-----MKWKVLPS 324 (391)
Q Consensus 255 ~W~~~~~---~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~-----~~W~~v~~ 324 (391)
+|+.+.+ -|.+|.++...+. ++.|||+||++.....+ .....+...|+|.++ .. -+|+.+.+
T Consensus 218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK--------~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK--------DVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh--------hhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9998754 3677877788777 99999999997543111 112234567899998 55 58899876
Q ss_pred ---CCCCCCCceeeEEEECCEEEEEccccCC--CCcccceeEecceEEEecCcccccc
Q 016328 325 ---MPKPDSHIEFAWVLVNNSIVIVGGTTEK--HPTTKKMVLVGEIFQFNLNTLVSAF 377 (391)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~l~i~GG~~~~--~~~~~~~~~~~~v~~~d~~~~~~~~ 377 (391)
.|.||...+++ +..+++-|.|||..+. ........+.+|+|-||+..++|..
T Consensus 290 ~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred CCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 37777776554 5567799999998652 2333445678899999998777653
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.3e-27 Score=217.58 Aligned_cols=290 Identities=15% Similarity=0.226 Sum_probs=212.8
Q ss_pred CCCCCCCceeeEeecC---cccccccccccccccccccCceEEc---cCCCCCccCceEEEECCEEEEEeccCCCCCCcc
Q 016328 65 NNGPQKGENIGVKTKK---DVVPKRILPATFQDLPAPELKWEKM---KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS 138 (391)
Q Consensus 65 ~~~~r~~~g~~~~~~~---~~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~ 138 (391)
.+.||++|-.+.+.+- +..+...+-++++.||..+++|..- .++|.+.+.|..+..+.+||+|||..+-+.+.+
T Consensus 29 vPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN 108 (830)
T KOG4152|consen 29 VPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN 108 (830)
T ss_pred CCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc
Confidence 3667887655544444 2233334556899999999999753 578888889999999999999999988888777
Q ss_pred eeEEEECCCCCeeeCCCC-----CCCCCcceEEEEEeCCEEEEEeCccCCCCC------CCcceeEEEeCCCC----ceE
Q 016328 139 HVDIYNFTDNTWGGRFDM-----PREMAHSHLGMVTDGRYIYVVTGQYGPQCR------GPTAHTFVLDTETK----KWQ 203 (391)
Q Consensus 139 ~~~~yd~~~~~W~~~~~~-----p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~~~yd~~~~----~W~ 203 (391)
+++.+....-.|+++.+- +.|.+|-+|+..+++++-|+|||...+... ..+++++.+++... .|.
T Consensus 109 dLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ 188 (830)
T KOG4152|consen 109 DLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWD 188 (830)
T ss_pred hHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEe
Confidence 666555555567776432 225689999999999999999998543211 12788888877643 387
Q ss_pred EC---CCCCCCCCCceEEEE------CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceee-----cCCCCCCcce
Q 016328 204 DL---PPLPVPRYAPATQLW------RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-----IPIPRGGPHR 269 (391)
Q Consensus 204 ~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~~~~~~ 269 (391)
.. ..+|.+|..|+++++ ..++||+||.++-+. .+.|.+ |.++..|.+. +||||.. |
T Consensus 189 ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RL---gDLW~L-----dl~Tl~W~kp~~~G~~PlPRSL--H 258 (830)
T KOG4152|consen 189 IPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRL---GDLWTL-----DLDTLTWNKPSLSGVAPLPRSL--H 258 (830)
T ss_pred cccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccc---cceeEE-----ecceeecccccccCCCCCCccc--c
Confidence 65 378999999999987 347999999987432 455665 4779999864 5677766 4
Q ss_pred eEEEECCEEEEEeCCCCCC----CcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC-----CCCCCCCCceeeEEEE
Q 016328 270 ACVVVDDRLLVIGGQEGDF----MAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP-----SMPKPDSHIEFAWVLV 339 (391)
Q Consensus 270 ~~~~~~~~i~v~GG~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~-----~~~~~~~~~~~~~~~~ 339 (391)
+++.+++++|||||.-... ...+-+...+|+ +.+-+++ .++.|..+- +-..||.|++|+++.+
T Consensus 259 sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT-------ssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 259 SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCT-------SSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred cceeecceeEEecceeeeeccccccccccceeeec-------cceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 9999999999999974221 111112233332 3355667 889998873 2236788889999999
Q ss_pred CCEEEEEccccCCCCcccceeEecceEEEecC
Q 016328 340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 371 (391)
Q Consensus 340 ~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~ 371 (391)
+.+|||..|+++..+..+......|+|-+|.+
T Consensus 332 gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 332 GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 99999999999998888777777889988874
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.6e-26 Score=212.18 Aligned_cols=275 Identities=17% Similarity=0.259 Sum_probs=206.4
Q ss_pred HHHHHHhheecCEEEEecCCCCcccceeEeeecCCCCeeecCC-----CCCCCCceeeEeecC-ccccc----ccccccc
Q 016328 23 FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN-----NGPQKGENIGVKTKK-DVVPK----RILPATF 92 (391)
Q Consensus 23 ~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~-----~~~r~~~g~~~~~~~-~~~~~----~~~~~~~ 92 (391)
.++.|-++.+...|.+|||-+. ...+.++.||-.+|++.+|. +++-..+|....+.. +.+++ ..+++++
T Consensus 32 pRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdL 110 (830)
T KOG4152|consen 32 PRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDL 110 (830)
T ss_pred ccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchH
Confidence 3568889999999999998443 26788999999999977776 344445666655544 44433 3566788
Q ss_pred cccccccCceEEcc-------CCCCCccCceEEEECCEEEEEeccCCC--------CCCcceeEEEECCCC----CeeeC
Q 016328 93 QDLPAPELKWEKMK-------AAPVPRLDGAAIQIKNLLYVFAGYGSI--------DYVHSHVDIYNFTDN----TWGGR 153 (391)
Q Consensus 93 ~~~d~~~~~W~~~~-------~~p~~r~~~~~~~~~~~vyv~GG~~~~--------~~~~~~~~~yd~~~~----~W~~~ 153 (391)
+.+......|+++. ++|.||-+|+..+++++.|+|||.... ..++++++++++... .|...
T Consensus 111 YELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip 190 (830)
T KOG4152|consen 111 YELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIP 190 (830)
T ss_pred HHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecc
Confidence 88877778888884 367899999999999999999997321 237788999998855 38873
Q ss_pred ---CCCCCCCCcceEEEEEe------CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEEC
Q 016328 154 ---FDMPREMAHSHLGMVTD------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWR 221 (391)
Q Consensus 154 ---~~~p~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~ 221 (391)
..+|. +|..|+++++ ..++||+||..+-. +.++|.+|++|-+|++.. ..|.||+.|++++++
T Consensus 191 ~t~Gv~P~--pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG 264 (830)
T KOG4152|consen 191 ITYGVLPP--PRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG 264 (830)
T ss_pred cccCCCCC--CcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccceeec
Confidence 34444 7888888887 34899999998865 799999999999999875 578899999999999
Q ss_pred CEEEEEccCC-----CCccCCCccceEee--eecCCcccCCceeec-------CCCCCCcceeEEEECCEEEEEeCCCCC
Q 016328 222 GRLHVMGGSG-----ENRYTPEVDHWSLA--VKDGKPLEKEWRTEI-------PIPRGGPHRACVVVDDRLLVIGGQEGD 287 (391)
Q Consensus 222 ~~iyv~GG~~-----~~~~~~~~~~~~~~--~~~~d~~~~~W~~~~-------~~p~~~~~~~~~~~~~~i~v~GG~~~~ 287 (391)
+++|||||+- +.........|... +-++|..++.|+.+- ..||+|.+|+++.++.++|+..|+++.
T Consensus 265 nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 265 NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence 9999999973 22222233344432 445667899998752 369999999999999999999998865
Q ss_pred CCcCCCCCccccCcCCceecCcEEEEc
Q 016328 288 FMAKPGSPIFKCSRRNEVVYDDVYMLD 314 (391)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~~d 314 (391)
.. + ...++-..|+|-+|
T Consensus 345 rK---------A-wnnQVCCkDlWyLd 361 (830)
T KOG4152|consen 345 RK---------A-WNNQVCCKDLWYLD 361 (830)
T ss_pred hH---------h-hccccchhhhhhhc
Confidence 31 1 22344456677775
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.4e-25 Score=198.87 Aligned_cols=254 Identities=20% Similarity=0.291 Sum_probs=182.6
Q ss_pred eecCCCCCCCCcee---------eEeecC-cccccccccccccccccccCceEEc--cCCCCCccCceEEEEC-CEEEEE
Q 016328 61 IILPNNGPQKGENI---------GVKTKK-DVVPKRILPATFQDLPAPELKWEKM--KAAPVPRLDGAAIQIK-NLLYVF 127 (391)
Q Consensus 61 ~~lp~~~~r~~~g~---------~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~-~~vyv~ 127 (391)
..+|+++||....+ .++++. +......+-++++.||...+.|.++ ++.|.||+.|+++++. +.+|+|
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 55666777776333 333333 4444445667899999999999988 5568999999998885 799999
Q ss_pred eccCCC-C----CCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCC-CCCCCcceeEEEeCCCCc
Q 016328 128 AGYGSI-D----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP-QCRGPTAHTFVLDTETKK 201 (391)
Q Consensus 128 GG~~~~-~----~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~yd~~~~~ 201 (391)
||.-.. + .--.++|+||+.+++|+++..-..|.+|++|-++++.++|++|||+... ......|++|+||+++-+
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 997322 1 1235799999999999998776677799999999999999999998543 222348999999999999
Q ss_pred eEECCC---CCCCCCCceEEEE-CCEEEEEccCCCCcc-------CCCccceEeeeecCCcccCCceeecC---CCCCCc
Q 016328 202 WQDLPP---LPVPRYAPATQLW-RGRLHVMGGSGENRY-------TPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGP 267 (391)
Q Consensus 202 W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~~-------~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~ 267 (391)
|+.+.+ -|.||+++++.+. ++.|||.||++-... ....+.|.+.....+...-+|..+.| .|.+|.
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 999964 4789999999988 999999999863221 11223444332211111256777644 366666
Q ss_pred ceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEc
Q 016328 268 HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 322 (391)
Q Consensus 268 ~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v 322 (391)
++++++. +++-+.|||...-.... ..-...+.+|+|.|| ..++|...
T Consensus 299 gfsv~va~n~kal~FGGV~D~eeee--------Esl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 299 GFSVAVAKNHKALFFGGVCDLEEEE--------ESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceeEEEecCCceEEecceecccccc--------hhhhhhhhhhhhheecccchhhHh
Confidence 7787766 56999999986421100 011224689999999 99999776
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=5e-19 Score=157.36 Aligned_cols=257 Identities=20% Similarity=0.251 Sum_probs=175.8
Q ss_pred cccccccc--cCceEEccCCC-CCccCceEEEECCEEEEEeccCCC----CCCcceeEEEECCCCCeeeCCCCCCCCCcc
Q 016328 91 TFQDLPAP--ELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI----DYVHSHVDIYNFTDNTWGGRFDMPREMAHS 163 (391)
Q Consensus 91 ~~~~~d~~--~~~W~~~~~~p-~~r~~~~~~~~~~~vyv~GG~~~~----~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~ 163 (391)
.++.+|.. ...|++++..| .+|.+..+++++++||||||.... .+..+++++||+.+|+|+.+.... |..-.
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~ 137 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLV 137 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccc
Confidence 45555544 35899999988 778889999999999999998432 346788999999999999986432 22445
Q ss_pred eEEEEEeCC-EEEEEeCccCCCC-------------------------------CCCcceeEEEeCCCCceEECCCCC-C
Q 016328 164 HLGMVTDGR-YIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLP-V 210 (391)
Q Consensus 164 ~~~~~~~~~-~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~~-~ 210 (391)
.+..+.+++ +||++||.+...- ..-..++..|||.+++|+.+...| .
T Consensus 138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~ 217 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY 217 (381)
T ss_pred cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence 667777776 9999999852110 012567889999999999999777 6
Q ss_pred CCCCceEEEECCEEEEEccCCC-CccCCCccceEeeeecCCcccCCceeecCCCCC-------CcceeEEEECCEEEEEe
Q 016328 211 PRYAPATQLWRGRLHVMGGSGE-NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG-------GPHRACVVVDDRLLVIG 282 (391)
Q Consensus 211 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-------~~~~~~~~~~~~i~v~G 282 (391)
++++++.+.-++++.++-|.-- .-..+.+.+.++ .-...+|..++++|.. ..++-.-..++.+.+.|
T Consensus 218 ~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~-----~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~G 292 (381)
T COG3055 218 GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADF-----GGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAG 292 (381)
T ss_pred CccCcceeecCCeEEEEcceecCCccccceeEEEe-----ccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEec
Confidence 8888777777888888877532 222223333332 3567889988766532 22222335688899999
Q ss_pred CCCCCCCcCCCCCccccCcC--CceecCcEEEEcCcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcc
Q 016328 283 GQEGDFMAKPGSPIFKCSRR--NEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT 356 (391)
Q Consensus 283 G~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~d~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~ 356 (391)
|.+.+...+...+..--.+. ...+.++||.+| ++.|+.+..||.++.. + +.+..++.||++||.+..+...
T Consensus 293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G-~s~~~nn~vl~IGGE~~~Gka~ 365 (381)
T COG3055 293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-G-VSLSYNNKVLLIGGETSGGKAT 365 (381)
T ss_pred CCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-e-EEEecCCcEEEEccccCCCeee
Confidence 97643321111000000111 123567899995 8899999999987654 2 3478899999999998776543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=154.70 Aligned_cols=261 Identities=20% Similarity=0.289 Sum_probs=188.7
Q ss_pred EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCC--CCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCc
Q 016328 103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ 180 (391)
Q Consensus 103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~ 180 (391)
+.+|++|.+-..-+.+.+++.+||-=|..+. +.+..|++. ..|+.++..|.+ +|.....++++++||||||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 3568899998888888999999996664332 355666654 589999999986 68888999999999999998
Q ss_pred cCCCC--CCCcceeEEEeCCCCceEECC-CCCCCCCCceEEEECC-EEEEEccCCCCc----------------------
Q 016328 181 YGPQC--RGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRG-RLHVMGGSGENR---------------------- 234 (391)
Q Consensus 181 ~~~~~--~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------- 234 (391)
..... .+..+++++|||.+++|+++. ..|....++.++.+++ +||++||.....
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 54433 334789999999999999997 4567778888888888 999999986421
Q ss_pred -----cCCCccceEeeeecCCcccCCceeecCCCC-CCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecC
Q 016328 235 -----YTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308 (391)
Q Consensus 235 -----~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (391)
..+....|+.++..|||++++|+.+...|- ++++++.+.-++++.++-|+-.+. .++ .
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-----------LRt-----~ 245 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-----------LRT-----A 245 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC-----------ccc-----c
Confidence 112233567778889999999999876653 344445555678899999986554 122 2
Q ss_pred cEEE--Ec-CcCcEEEcCCCCCCCCCc-----eeeEEEECCEEEEEccccCCCC----------ccc--ceeEecceEEE
Q 016328 309 DVYM--LD-DEMKWKVLPSMPKPDSHI-----EFAWVLVNNSIVIVGGTTEKHP----------TTK--KMVLVGEIFQF 368 (391)
Q Consensus 309 ~v~~--~d-~~~~W~~v~~~~~~~~~~-----~~~~~~~~~~l~i~GG~~~~~~----------~~~--~~~~~~~v~~~ 368 (391)
+++. +. ...+|..+.++|.+.... ++-.-..++.+++.||-+..+. .+. +-....+||.+
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~ 325 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF 325 (381)
T ss_pred ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence 3444 44 577999998887665322 1222456889999999663321 010 11256799999
Q ss_pred ecCccc-cccCCCccccc
Q 016328 369 NLNTLV-SAFYPFNILCH 385 (391)
Q Consensus 369 d~~~~~-~~~lp~~~~~~ 385 (391)
|-+.|+ ..+||+++.+-
T Consensus 326 d~g~Wk~~GeLp~~l~YG 343 (381)
T COG3055 326 DNGSWKIVGELPQGLAYG 343 (381)
T ss_pred cCCceeeecccCCCccce
Confidence 999999 88999976543
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.47 E-value=3.6e-15 Score=137.65 Aligned_cols=296 Identities=15% Similarity=0.172 Sum_probs=178.3
Q ss_pred HHHHHhheecC--EEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCceeeEeecCcccccccccccccccccccCc
Q 016328 24 VMILGFALVAD--FFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK 101 (391)
Q Consensus 24 ~~~~~~~~~~~--~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 101 (391)
.+.|..+.-.+ -+|+.||++|-+.+. ++|.|+..++.
T Consensus 261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~-----------------------------------------DFW~Y~v~e~~ 299 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGWDGTQDLA-----------------------------------------DFWAYSVKENQ 299 (723)
T ss_pred cCcceEEEeCCCcEEEEecCcccchhHH-----------------------------------------HHHhhcCCcce
Confidence 45777777655 899999999977533 67777778888
Q ss_pred eEEc---cCCCCCccCceEEEECC--EEEEEeccCCCC-----CCcceeEEEECCCCCeeeCCCC----CCCCCcceEEE
Q 016328 102 WEKM---KAAPVPRLDGAAIQIKN--LLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDM----PREMAHSHLGM 167 (391)
Q Consensus 102 W~~~---~~~p~~r~~~~~~~~~~--~vyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~----p~~~~r~~~~~ 167 (391)
|..+ ...|-+|..|-++..-. ++|+.|-+-+.. ...+++|+||..++.|..+.-- ..|..-+.|.+
T Consensus 300 W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM 379 (723)
T KOG2437|consen 300 WTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQM 379 (723)
T ss_pred eEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeeccee
Confidence 9876 35799999999987754 999999873321 2446799999999999986421 11335677899
Q ss_pred EEeCCE--EEEEeCccCCCCCCCcceeEEEeCCCCceEECCC----------CCCCCCCceEEE--ECCEEEEEccCCCC
Q 016328 168 VTDGRY--IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP----------LPVPRYAPATQL--WRGRLHVMGGSGEN 233 (391)
Q Consensus 168 ~~~~~~--iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~----------~~~~r~~~~~~~--~~~~iyv~GG~~~~ 233 (391)
++.+.+ |||+||+.-........-++.||.....|..+.. ....|.+|++-. -++++|++||....
T Consensus 380 ~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 380 CVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred eEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 998887 9999998544322236789999999999988741 224566666654 47789999997643
Q ss_pred ccCCCccceEeeeecCCcccCCcee-ecCC-CCCCcc--eeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328 234 RYTPEVDHWSLAVKDGKPLEKEWRT-EIPI-PRGGPH--RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309 (391)
Q Consensus 234 ~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~-p~~~~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (391)
.-..-.-.|++....-+... .-+. -.++ |..... ...-.-..+|.+.-|...... .......+.
T Consensus 460 ~El~L~f~y~I~~E~~~~~s-~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-----------~~e~~~rns 527 (723)
T KOG2437|consen 460 TELNLFFSYDIDSEHVDIIS-DGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-----------KREENVRNS 527 (723)
T ss_pred eEEeehhcceeccccchhhh-ccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-----------CccccccCc
Confidence 22222222322211110000 0000 0111 111100 011112345666666543321 112224556
Q ss_pred EEEEc-CcCcEEEcCC------------------------CCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecc
Q 016328 310 VYMLD-DEMKWKVLPS------------------------MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGE 364 (391)
Q Consensus 310 v~~~d-~~~~W~~v~~------------------------~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~ 364 (391)
+|.|+ .++.|..|-. ++.+|..+..++.+..+-+|++||....+..... ...|
T Consensus 528 ~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m--~l~d 605 (723)
T KOG2437|consen 528 FWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKM--RLDD 605 (723)
T ss_pred EEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchh--hhhh
Confidence 77777 7777766522 1234443333333445678999998876654322 2457
Q ss_pred eEEEecCccc
Q 016328 365 IFQFNLNTLV 374 (391)
Q Consensus 365 v~~~d~~~~~ 374 (391)
.|..+.-+|.
T Consensus 606 fW~l~I~rp~ 615 (723)
T KOG2437|consen 606 FWSLKICRPS 615 (723)
T ss_pred HHHHhhcccc
Confidence 7777776666
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.46 E-value=2.9e-14 Score=131.74 Aligned_cols=184 Identities=16% Similarity=0.201 Sum_probs=135.9
Q ss_pred cCceEEccC----------CCCCccCceEEEECC--EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC-CCCCcceE
Q 016328 99 ELKWEKMKA----------APVPRLDGAAIQIKN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHL 165 (391)
Q Consensus 99 ~~~W~~~~~----------~p~~r~~~~~~~~~~--~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~r~~~ 165 (391)
..+|.++++ -|..|.+|.++...+ .||+.||+++.+. +.++|+|+...+.|..+..-. .|-.|.+|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 458987743 367899999998865 9999999999887 466999999999999875322 34489999
Q ss_pred EEEEeCC--EEEEEeCccCCCCC---CCcceeEEEeCCCCceEECC------CCCCCCCCceEEEECCE--EEEEccCCC
Q 016328 166 GMVTDGR--YIYVVTGQYGPQCR---GPTAHTFVLDTETKKWQDLP------PLPVPRYAPATQLWRGR--LHVMGGSGE 232 (391)
Q Consensus 166 ~~~~~~~--~iyv~GG~~~~~~~---~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~ 232 (391)
-++.... ++|++|-+-+.... ...+++|+||..++.|..+. .-|...+-|.+++..++ |||+||+.-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 8888765 99999987544322 23689999999999999986 23566788999999888 999999864
Q ss_pred CccCCCccceEeeeecCCcccCCceeecCC----------CCCCcceeE--EEECCEEEEEeCCCCC
Q 016328 233 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPI----------PRGGPHRAC--VVVDDRLLVIGGQEGD 287 (391)
Q Consensus 233 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----------p~~~~~~~~--~~~~~~i~v~GG~~~~ 287 (391)
. +...+|. -+|.||.+...|..+..- -..|.+|++ +.-+..+|++||...+
T Consensus 397 ~---~~e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 397 T---CNEPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred c---CCCcccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 3 2233443 367778999999865321 123334444 4457789999997644
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.32 E-value=4.5e-12 Score=83.70 Aligned_cols=50 Identities=32% Similarity=0.517 Sum_probs=44.8
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCC
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 212 (391)
+|.++++++++++|||+||..... ...+++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSG--KYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCC--CccccEEEEcCCCCcEEECCCCCCCC
Confidence 478899999999999999998742 34899999999999999999999987
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.31 E-value=5.2e-12 Score=83.36 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=44.9
Q ss_pred CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC
Q 016328 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159 (391)
Q Consensus 111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 159 (391)
||.+|++++++++|||+||.......++++++||+.+++|+.+++||.|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 6999999999999999999987566678899999999999999999983
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.18 E-value=2.4e-11 Score=79.11 Aligned_cols=47 Identities=34% Similarity=0.604 Sum_probs=43.1
Q ss_pred CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (391)
Q Consensus 111 ~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p 157 (391)
||.+|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999886777899999999999999998886
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.06 E-value=2e-10 Score=74.76 Aligned_cols=47 Identities=40% Similarity=0.700 Sum_probs=41.4
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 209 (391)
+|..+++++++++|||+||.++.. ..++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 478999999999999999998833 24899999999999999999886
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.01 E-value=8.7e-10 Score=72.25 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=42.1
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 220 (391)
+++||||||.+... ...++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998422 23489999999999999999999999999999863
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.01 E-value=9.6e-10 Score=72.05 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=41.5
Q ss_pred CccCceEEEECCEEEEEecc--CCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328 111 PRLDGAAIQIKNLLYVFAGY--GSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (391)
Q Consensus 111 ~r~~~~~~~~~~~vyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~p 157 (391)
||.+|++++++++|||+||. +......+++++||+++++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 444556788999999999999998775
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.00 E-value=3.5e-10 Score=74.25 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=32.2
Q ss_pred CccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC
Q 016328 111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (391)
Q Consensus 111 ~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p 157 (391)
||.+|+++.+ +++|||+||.+.....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 5899999999887667889999999999999998876
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.97 E-value=2.2e-09 Score=70.30 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=40.5
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCC
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 209 (391)
+|..|++++.+++|||+||..........++++.||+++++|+++++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4789999999999999999922222234899999999999999999875
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=3.7e-09 Score=69.23 Aligned_cols=48 Identities=29% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCEEEEEeccC-CCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328 121 KNLLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 121 ~~~vyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~ 170 (391)
+++|||+||.+ .....++++++||+.+++|++++++|. +|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 57899999998 456678899999999999999988877 8999988763
No 40
>smart00612 Kelch Kelch domain.
Probab=98.87 E-value=4.2e-09 Score=68.28 Aligned_cols=47 Identities=40% Similarity=0.630 Sum_probs=41.2
Q ss_pred EEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECC
Q 016328 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222 (391)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 222 (391)
+|||+||..+.. ..+++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ---RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc---eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 489999986532 37899999999999999999999999999998864
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.85 E-value=2.9e-09 Score=69.80 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=30.3
Q ss_pred CcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC
Q 016328 161 AHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 210 (391)
Q Consensus 161 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 210 (391)
+|..|+++.. +++|||+||.+.... .++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~--~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGS--PLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TE--E---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCc--ccCCEEEEECCCCEEEECCCCCC
Confidence 4778888887 589999999987642 38999999999999999988773
No 42
>smart00612 Kelch Kelch domain.
Probab=98.70 E-value=2.8e-08 Score=64.30 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=39.6
Q ss_pred EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCC
Q 016328 123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR 172 (391)
Q Consensus 123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~ 172 (391)
+|||+||.+.. ...+++++||+.+++|+.+++|+. +|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence 48999998753 346789999999999999999988 788888887764
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.67 E-value=2.7e-06 Score=74.96 Aligned_cols=154 Identities=17% Similarity=0.261 Sum_probs=97.6
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceE-EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC----CceEECC-CCCCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHL-GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLP-PLPVP 211 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~-~~~~~ 211 (391)
.....||+.+++++.+..... -.+. .+..-++++.++||... + ...+..|++.+ ..|.+.+ .|..+
T Consensus 46 a~s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG~ll~tGG~~~-G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDGRLLQTGGDND-G----NKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCC---CcccCcCCCCCCCEEEeCCCCc-c----ccceEEEecCCCCCCCCceECcccccCC
Confidence 346789999999998754332 2222 23345889999999754 2 35566788876 6798886 58999
Q ss_pred CCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec----CCCCCCcceeEEEECCEEEEEeCCCC
Q 016328 212 RYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI----PIPRGGPHRACVVVDDRLLVIGGQEG 286 (391)
Q Consensus 212 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~----~~p~~~~~~~~~~~~~~i~v~GG~~~ 286 (391)
|.++++..+ +|+++|+||.....+ |.|..... ......|..+. ..+...+-+..+.-+++||+++....
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~----E~~P~~~~--~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s 191 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTY----EFWPPKGP--GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS 191 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcc----cccCCccC--CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc
Confidence 999988865 789999999874322 21110000 01111222221 23455555677778999999998631
Q ss_pred CCCcCCCCCccccCcCCceecCcEEEEcCcCcE-EEcCCCCCC
Q 016328 287 DFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW-KVLPSMPKP 328 (391)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W-~~v~~~~~~ 328 (391)
.++++ .++++ +.++.+|..
T Consensus 192 ----------------------~i~d~-~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 192 ----------------------IIYDY-KTNTVVRTLPDLPGG 211 (243)
T ss_pred ----------------------EEEeC-CCCeEEeeCCCCCCC
Confidence 24544 66655 788887753
No 44
>PLN02772 guanylate kinase
Probab=98.61 E-value=3.3e-07 Score=85.59 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC-CCCCcceEEEEEe-CCEEEEEeCccCCCCC
Q 016328 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMVTD-GRYIYVVTGQYGPQCR 186 (391)
Q Consensus 109 p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 186 (391)
..|+..++++.+++++||+||.++.....+.+++||..+++|....-+. .|.+|..|+++++ +++|+|+++..+.
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 4588899999999999999998886656788999999999999854322 2447888988887 6799999876543
Q ss_pred CCcceeEEEeCCCC
Q 016328 187 GPTAHTFVLDTETK 200 (391)
Q Consensus 187 ~~~~~~~~yd~~~~ 200 (391)
-.++|.+...|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 367788777664
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.60 E-value=1.1e-07 Score=59.91 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=35.7
Q ss_pred CCCCccCceEEEECCEEEEEeccCC-CCCCcceeEEEECCC
Q 016328 108 APVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTD 147 (391)
Q Consensus 108 ~p~~r~~~~~~~~~~~vyv~GG~~~-~~~~~~~~~~yd~~~ 147 (391)
+|.+|.+|+++.++++|||+||.+. .+...+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5889999999999999999999984 666788999999876
No 46
>PLN02772 guanylate kinase
Probab=98.50 E-value=8.6e-07 Score=82.85 Aligned_cols=79 Identities=22% Similarity=0.307 Sum_probs=64.1
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC---CCCCCCCCceEEEE-CCEEEEEccCCCCccC
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLW-RGRLHVMGGSGENRYT 236 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 236 (391)
++..++++.+++++||+||.+.... ..+.+++||+.+.+|.... +.|.||.+|+++++ +++|+|+++...
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~--~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---- 97 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNT--LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---- 97 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCcc--ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC----
Confidence 4677899999999999999876442 2689999999999999875 78899999999988 678999997653
Q ss_pred CCccceEee
Q 016328 237 PEVDHWSLA 245 (391)
Q Consensus 237 ~~~~~~~~~ 245 (391)
++...|-++
T Consensus 98 ~~~~~w~l~ 106 (398)
T PLN02772 98 PDDSIWFLE 106 (398)
T ss_pred CccceEEEE
Confidence 235556654
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.35 E-value=1.3e-06 Score=54.94 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 159 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
|.+|..|++++++++|||+||.++ ......+++|+||+.+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 347999999999999999999985 2223489999999876
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.28 E-value=0.00024 Score=63.00 Aligned_cols=181 Identities=14% Similarity=0.214 Sum_probs=107.0
Q ss_pred ccccccccccCceEEccCCCCCccCc----eEEEEC----C-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCC
Q 016328 90 ATFQDLPAPELKWEKMKAAPVPRLDG----AAIQIK----N-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160 (391)
Q Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~----~~~~~~----~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~ 160 (391)
..+..+||.+.+|..+|+.+.++... ...-++ + +|..+....... ....+++|+..+++|+.+...+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence 36889999999999998655432211 111122 1 555554432111 2346999999999999987433211
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEE-CCCCCCCC----CCceEEEECCEEEEEccCCCCcc
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD-LPPLPVPR----YAPATQLWRGRLHVMGGSGENRY 235 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~ 235 (391)
.... ..+.++|.||-+.-..... ....+..||..+++|+. ++ +|..+ ....++.++|+|.++.....
T Consensus 93 ~~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~--- 164 (230)
T TIGR01640 93 PLKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD--- 164 (230)
T ss_pred cccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---
Confidence 1112 2667899888886432211 12378999999999995 54 34322 23456678899988865432
Q ss_pred CCCccceEeeeecCCcccCCceeecCC-----CCCC--cceeEEEECCEEEEEeC
Q 016328 236 TPEVDHWSLAVKDGKPLEKEWRTEIPI-----PRGG--PHRACVVVDDRLLVIGG 283 (391)
Q Consensus 236 ~~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~~--~~~~~~~~~~~i~v~GG 283 (391)
....+.|.++ + ....+|+..-.+ +.-. .....+..+++|++.-.
T Consensus 165 ~~~~~IWvl~--d--~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 165 TNNFDLWVLN--D--AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CCcEEEEEEC--C--CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 1236778654 2 334569864222 2111 12345667888888765
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.18 E-value=5.7e-05 Score=66.63 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=63.9
Q ss_pred ceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec-CCCCCCcc
Q 016328 190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPH 268 (391)
Q Consensus 190 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~ 268 (391)
.....||+.+++++.+......-+...+..-+|++++.||..+. ...+..|+. +.+..+..|.+.+ .|..+|..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p---~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTP---CTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEec---CCCCCCCCceECcccccCCCcc
Confidence 33457999999999887555555555555678999999998653 222333331 1112356798775 58888988
Q ss_pred eeEEEE-CCEEEEEeCCCC
Q 016328 269 RACVVV-DDRLLVIGGQEG 286 (391)
Q Consensus 269 ~~~~~~-~~~i~v~GG~~~ 286 (391)
.++..+ ||+++|+||...
T Consensus 121 pT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred ccceECCCCCEEEEeCcCC
Confidence 888766 889999999863
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.12 E-value=0.00066 Score=60.19 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=112.4
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCC-cce-EEEEEeCC-----EEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMA-HSH-LGMVTDGR-----YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 210 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~-r~~-~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 210 (391)
..+.++||.|++|..+++.+.+.. ... .....++. +|..+....+.. ....++.|+..++.|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCC
Confidence 358999999999999976543201 111 11111221 455554322111 14678999999999999874332
Q ss_pred C-CCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCC----cceeEEEECCEEEEEeCCC
Q 016328 211 P-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG----PHRACVVVDDRLLVIGGQE 285 (391)
Q Consensus 211 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~----~~~~~~~~~~~i~v~GG~~ 285 (391)
. ......+.++|.||-+.-.... ... ..+..||..+++|+...++|... .....+.++|+|.++....
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~-----~~~--~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT-----NPD--YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC-----CCc--EEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence 1 1122367789999988743211 111 13556778899999522334322 1345677889988876543
Q ss_pred CCCCcCCCCCccccCcCCceecCcEEEEc--CcCcEEEcCCCCC---CCCC--ceeeEEEECCEEEEEccccCCCCcccc
Q 016328 286 GDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK---PDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKK 358 (391)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d--~~~~W~~v~~~~~---~~~~--~~~~~~~~~~~l~i~GG~~~~~~~~~~ 358 (391)
... .-+||..+ .+..|+++-.++. +... .....+.-+++|++.... ...
T Consensus 164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~----- 219 (230)
T TIGR01640 164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP----- 219 (230)
T ss_pred CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc-----
Confidence 211 13588885 4567988644432 1111 112335667888887753 111
Q ss_pred eeEecceEEEecCcc
Q 016328 359 MVLVGEIFQFNLNTL 373 (391)
Q Consensus 359 ~~~~~~v~~~d~~~~ 373 (391)
.-+..||++++
T Consensus 220 ----~~~~~y~~~~~ 230 (230)
T TIGR01640 220 ----FYIFYYNVGEN 230 (230)
T ss_pred ----eEEEEEeccCC
Confidence 13888888764
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.11 E-value=0.0012 Score=58.17 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=95.5
Q ss_pred EEEEEeccCCCCCCcceeEEEECCCCC--------e---eeCCCCCCCCCcceEEEEEeC----CEEEEEeCccCCC---
Q 016328 123 LLYVFAGYGSIDYVHSHVDIYNFTDNT--------W---GGRFDMPREMAHSHLGMVTDG----RYIYVVTGQYGPQ--- 184 (391)
Q Consensus 123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~p~~~~r~~~~~~~~~----~~iyv~GG~~~~~--- 184 (391)
.-+|-||....+.+.+++++....... . +.+.++|. +|++|++.++. ....+|||+.-.-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 445678888888777888887766443 1 11456766 89999987762 2577899974211
Q ss_pred --------CCCCcceeEEEeCCCCceE--ECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328 185 --------CRGPTAHTFVLDTETKKWQ--DLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (391)
Q Consensus 185 --------~~~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 254 (391)
..+-...++..|++-.-.+ .++.+....+.|.+..-++.+|++||..-..-......|.+.+.- +...
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdL--llGS 195 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDL--LLGS 195 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEee--cCCC
Confidence 0112466888888876554 345677888889999999999999998643322233444443211 1111
Q ss_pred CceeecCCCCCCcceeEEE---ECCEEEEEeCCCCC
Q 016328 255 EWRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGD 287 (391)
Q Consensus 255 ~W~~~~~~p~~~~~~~~~~---~~~~i~v~GG~~~~ 287 (391)
-.....-++.+..-.++.+ -.++.+|+||+..+
T Consensus 196 P~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 196 PAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred ceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 1111111233332222222 24678889999654
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.86 E-value=0.0022 Score=56.59 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=71.3
Q ss_pred EEEEEeCccCCCCCCCcceeEEEeCCCCc--------e---EECCCCCCCCCCceEEEE--CC--EEEEEccCCCCc-cC
Q 016328 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKK--------W---QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENR-YT 236 (391)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~-~~ 236 (391)
.-+|.||+..+... .+.++........ . ..+.+.|.+|++|++.++ .+ ..++|||++-.. -.
T Consensus 40 ~YlIHGGrTPNNEl--S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNEL--SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCccc--ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 45667888765433 5666666554322 1 223589999999999875 33 488999986321 12
Q ss_pred CCccceEeeeec------CCcccCCce--eecCCCCCCcceeEEEECCEEEEEeCCCC
Q 016328 237 PEVDHWSLAVKD------GKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEG 286 (391)
Q Consensus 237 ~~~~~~~~~~~~------~d~~~~~W~--~~~~~p~~~~~~~~~~~~~~i~v~GG~~~ 286 (391)
..++.|+-.+.+ .|.+-.-.+ .++.+..+...|.+.+-+|.+|++||+.-
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEc
Confidence 345666654332 233333333 24666778888888889999999999863
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.79 E-value=0.023 Score=54.78 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=134.6
Q ss_pred HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCC----------CCCceeeEeecC-cccccccccccccc
Q 016328 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP----------QKGENIGVKTKK-DVVPKRILPATFQD 94 (391)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~----------r~~~g~~~~~~~-~~~~~~~~~~~~~~ 94 (391)
.-++.++.+|+.... ..+.++|.++++ ....-... +...+.++..+. +... .+..+++
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~a 134 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYA 134 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEE
Confidence 346779999997642 268899999887 33222110 101111111111 2211 2336788
Q ss_pred cccccC--ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceEEEEEe
Q 016328 95 LPAPEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 95 ~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~~~~~~ 170 (391)
+|..+. .|+.-.+ .+ ...+.++.++.||+..+ ...+..+|+++.+ |+.-...|....+...+-++.
T Consensus 135 ld~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 135 LNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred EECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 887655 6865322 11 12223556888888543 2358999998775 887433322101222233455
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCC--ceEECCCCCCC--------CCCceEEEECCEEEEEccCCCCccCCCcc
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVD 240 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 240 (391)
++.+|+..+ ...+..+|+++. .|+.--..+.. ....+-++.++.+|+.+. ++ .
T Consensus 205 ~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-------~ 267 (394)
T PRK11138 205 FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-------N 267 (394)
T ss_pred CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC-------e
Confidence 777776432 245677888765 48743211111 111233467888888652 11 1
Q ss_pred ceEeeeecCCccc--CCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-Cc-
Q 016328 241 HWSLAVKDGKPLE--KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE- 316 (391)
Q Consensus 241 ~~~~~~~~~d~~~--~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~- 316 (391)
++++|+++ ..|+.... .. ...++.+++||+.... ..++.+| .+
T Consensus 268 -----l~ald~~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG 314 (394)
T PRK11138 268 -----LVALDLRSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGG 314 (394)
T ss_pred -----EEEEECCCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCC
Confidence 22223433 34765321 11 1346678899987532 2388888 54
Q ss_pred -CcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328 317 -MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374 (391)
Q Consensus 317 -~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~ 374 (391)
..|+.-. +. .+.. .+.++.+++||+.... + .++.+|+++.+
T Consensus 315 ~~~W~~~~-~~-~~~~--~sp~v~~g~l~v~~~~---G----------~l~~ld~~tG~ 356 (394)
T PRK11138 315 VELWSQSD-LL-HRLL--TAPVLYNGYLVVGDSE---G----------YLHWINREDGR 356 (394)
T ss_pred cEEEcccc-cC-CCcc--cCCEEECCEEEEEeCC---C----------EEEEEECCCCC
Confidence 4686421 11 1111 2335678898874321 1 46666765544
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.61 E-value=0.042 Score=52.95 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=125.8
Q ss_pred hheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceEE
Q 016328 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWEK 104 (391)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~ 104 (391)
.++.++.+|+.+ .+ ..+.++|.++++ ...+...+ ..+...+.++...-. .....++.+|+.+. .|+.
T Consensus 116 ~~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~--~~ssP~v~~~~v~v~-~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 116 VTVAGGKVYIGS-EK-----GQVYALNAEDGEVAWQTKVAGE--ALSRPVVSDGLVLVH-TSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred cEEECCEEEEEc-CC-----CEEEEEECCCCCCcccccCCCc--eecCCEEECCEEEEE-CCCCEEEEEEccCCCEeeee
Confidence 456688888754 22 268899999987 33322111 111111222211101 11236788888766 5876
Q ss_pred ccCCCC--CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCC------CcceEEEEEeCCEE
Q 016328 105 MKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM------AHSHLGMVTDGRYI 174 (391)
Q Consensus 105 ~~~~p~--~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~------~r~~~~~~~~~~~i 174 (391)
-...|. .+...+-++.++.+|+..+. ..+..+|+.+. .|+.-...|... .....+-++.++.+
T Consensus 187 ~~~~~~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 187 NLDVPSLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred cCCCCcccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 433321 12223335567777775431 34778888876 487532222100 01123345678999
Q ss_pred EEEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc
Q 016328 175 YVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL 252 (391)
Q Consensus 175 yv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~ 252 (391)
|+.+. ...++++|+.+.+ |+.-- ..+ ...+..+++||+.... -.. +++|++
T Consensus 260 y~~~~---------~g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~--------g~l-----~ald~~ 312 (394)
T PRK11138 260 YALAY---------NGNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN--------DRV-----YALDTR 312 (394)
T ss_pred EEEEc---------CCeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcCC--------CeE-----EEEECC
Confidence 98652 2467899998764 87532 111 1346678899987531 111 122233
Q ss_pred --cCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcC--cEEEcCCCCC
Q 016328 253 --EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM--KWKVLPSMPK 327 (391)
Q Consensus 253 --~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~--~W~~v~~~~~ 327 (391)
+..|+..... .+...+.++.+++||+... ++ .++.+| .+. .|+. .+..
T Consensus 313 tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~~-~G----------------------~l~~ld~~tG~~~~~~--~~~~ 365 (394)
T PRK11138 313 GGVELWSQSDLL--HRLLTAPVLYNGYLVVGDS-EG----------------------YLHWINREDGRFVAQQ--KVDS 365 (394)
T ss_pred CCcEEEcccccC--CCcccCCEEECCEEEEEeC-CC----------------------EEEEEECCCCCEEEEE--EcCC
Confidence 3457642211 1122244567899887532 21 377777 443 4654 2221
Q ss_pred CCCCceeeEEEECCEEEEE
Q 016328 328 PDSHIEFAWVLVNNSIVIV 346 (391)
Q Consensus 328 ~~~~~~~~~~~~~~~l~i~ 346 (391)
... ..+.++.+++||+.
T Consensus 366 ~~~--~s~P~~~~~~l~v~ 382 (394)
T PRK11138 366 SGF--LSEPVVADDKLLIQ 382 (394)
T ss_pred Ccc--eeCCEEECCEEEEE
Confidence 111 22346688888885
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.60 E-value=0.0062 Score=57.30 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=80.1
Q ss_pred EEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCC--ccceEee
Q 016328 168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE--VDHWSLA 245 (391)
Q Consensus 168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~ 245 (391)
++.+++|+.++.. .....||+++..-...|.|+.+.....++.++++||++........... ...|...
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 3358899988553 3367999999998888888887777778888999999987643211110 1133322
Q ss_pred eec------CCcccCCceeecCCCCCCc-------ceeEEEE-CCEEEE-EeCCCCCCCcCCCCCccccCcCCceecCcE
Q 016328 246 VKD------GKPLEKEWRTEIPIPRGGP-------HRACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYDDV 310 (391)
Q Consensus 246 ~~~------~d~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (391)
.+. .....-.|+.+++.|-... -.+.+++ +..|+| .-+... -.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GT 201 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GT 201 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EE
Confidence 222 1233446777776553222 1244566 667888 443310 17
Q ss_pred EEEc-CcCcEEEcCC
Q 016328 311 YMLD-DEMKWKVLPS 324 (391)
Q Consensus 311 ~~~d-~~~~W~~v~~ 324 (391)
|.|| .+.+|+++..
T Consensus 202 ysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 202 YSFDTESHEWRKHGD 216 (342)
T ss_pred EEEEcCCcceeeccc
Confidence 9999 8899999975
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.34 E-value=0.16 Score=48.60 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=103.6
Q ss_pred HhheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceE
Q 016328 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWE 103 (391)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~ 103 (391)
+.++.++.+|+.+. + ..+.+||+.+++ ....-.. +.. +.....+....-+ .....++.+|..+. .|+
T Consensus 60 ~p~v~~~~v~v~~~-~-----g~v~a~d~~tG~~~W~~~~~~-~~~-~~p~v~~~~v~v~-~~~g~l~ald~~tG~~~W~ 130 (377)
T TIGR03300 60 QPAVAGGKVYAADA-D-----GTVVALDAETGKRLWRVDLDE-RLS-GGVGADGGLVFVG-TEKGEVIALDAEDGKELWR 130 (377)
T ss_pred ceEEECCEEEEECC-C-----CeEEEEEccCCcEeeeecCCC-Ccc-cceEEcCCEEEEE-cCCCEEEEEECCCCcEeee
Confidence 44677888887763 2 368899998887 2222211 111 1111112211111 12346788887654 586
Q ss_pred EccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCcc
Q 016328 104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181 (391)
Q Consensus 104 ~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~ 181 (391)
.-.. .+ ...+.+..++.+|+..+ ...+..+|+++. .|+.-...+....+...+.+..++.+|+ |..
T Consensus 131 ~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~- 198 (377)
T TIGR03300 131 AKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA- 198 (377)
T ss_pred eccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC-
Confidence 5321 11 11223445778887543 234889998866 4876432221001222334456676654 332
Q ss_pred CCCCCCCcceeEEEeCCCC--ceEECCCCCCCC--------CCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCc
Q 016328 182 GPQCRGPTAHTFVLDTETK--KWQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKP 251 (391)
Q Consensus 182 ~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~ 251 (391)
...+..+|+++. .|+.--..+... ...+.++.++.+|+.... + ....++. ..
T Consensus 199 -------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g-----~l~a~d~-----~t 260 (377)
T TIGR03300 199 -------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G-----RVAALDL-----RS 260 (377)
T ss_pred -------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C-----EEEEEEC-----CC
Confidence 245788998765 486432212111 122334567888876421 1 1222221 12
Q ss_pred ccCCceeecCCCCCCcceeEEEECCEEEEEe
Q 016328 252 LEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282 (391)
Q Consensus 252 ~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~G 282 (391)
-+..|+... +. ....++.+++||+..
T Consensus 261 G~~~W~~~~--~~---~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 261 GRVLWKRDA--SS---YQGPAVDDNRLYVTD 286 (377)
T ss_pred CcEEEeecc--CC---ccCceEeCCEEEEEC
Confidence 234476531 11 123456788888864
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.21 E-value=0.22 Score=47.58 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=85.2
Q ss_pred heecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccC--ceEEc
Q 016328 30 ALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL--KWEKM 105 (391)
Q Consensus 30 ~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~ 105 (391)
++-++.+|+.. .++ .+..+|+.+++ ........ ..+.....++...-. .....++.+|+.+. .|+.-
T Consensus 102 ~v~~~~v~v~~-~~g-----~l~ald~~tG~~~W~~~~~~~--~~~~p~v~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 102 GADGGLVFVGT-EKG-----EVIALDAEDGKELWRAKLSSE--VLSPPLVANGLVVVR-TNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred EEcCCEEEEEc-CCC-----EEEEEECCCCcEeeeeccCce--eecCCEEECCEEEEE-CCCCeEEEEEcCCCceeeEEc
Confidence 34466777543 333 68889998877 32222110 011111111211110 11335778887655 58754
Q ss_pred cCCCC--CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCC---C---cceEEEEEeCCEEE
Q 016328 106 KAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM---A---HSHLGMVTDGRYIY 175 (391)
Q Consensus 106 ~~~p~--~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~---~---r~~~~~~~~~~~iy 175 (391)
...+. .+...+.+..++.+|+ |..+ ..+..+|+.+. .|+.-...+... . ....+.++.++.+|
T Consensus 173 ~~~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 173 RVTPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred cCCCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 32221 1223344556776554 3321 24888998776 486532222100 0 11223445688888
Q ss_pred EEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCCCCceEEEECCEEEEEc
Q 016328 176 VVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMG 228 (391)
Q Consensus 176 v~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G 228 (391)
+... ...+++||+++.+ |+.-. . .....++.+++||+..
T Consensus 246 ~~~~---------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 246 AVSY---------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTD 286 (377)
T ss_pred EEEc---------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEEC
Confidence 8642 2468889987654 76531 1 1223446788898874
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.62 E-value=0.44 Score=41.95 Aligned_cols=208 Identities=21% Similarity=0.291 Sum_probs=113.0
Q ss_pred cccccccccC--ceEEccCCCCCccCce--EEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcce
Q 016328 91 TFQDLPAPEL--KWEKMKAAPVPRLDGA--AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSH 164 (391)
Q Consensus 91 ~~~~~d~~~~--~W~~~~~~p~~r~~~~--~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~ 164 (391)
.+.++|+.+. .|+.- +..+..... .+..++.+|+..+ ...+.++|+.+.+ |+.-. +.+ ..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~---~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP---IS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC---GG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc---cc
Confidence 4567777554 58762 222233333 3447889999842 3459999997775 77643 321 11
Q ss_pred EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eE-ECCCCCC--CCCCceEEEECCEEEEEccCCCCccCCCc
Q 016328 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQ-DLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPEV 239 (391)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 239 (391)
......++.||+... ...++.+|.++.+ |+ .....+. .+......+.++.+|+.... + ..
T Consensus 70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-----~l 134 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-G-----KL 134 (238)
T ss_dssp SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-S-----EE
T ss_pred ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-C-----cE
Confidence 124788999998862 2478999977664 98 4433232 23344455567777766531 0 11
Q ss_pred cceEeeeecCCcc--cCCceeecCCCCCCc--------ceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCc
Q 016328 240 DHWSLAVKDGKPL--EKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309 (391)
Q Consensus 240 ~~~~~~~~~~d~~--~~~W~~~~~~p~~~~--------~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (391)
+.+|++ ...|+.....+.... ....+..++.+|+..+.. .
T Consensus 135 -------~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------~ 184 (238)
T PF13360_consen 135 -------VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----------------------R 184 (238)
T ss_dssp -------EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----------------------S
T ss_pred -------EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----------------------e
Confidence 112233 344665444443221 123334467888876542 1
Q ss_pred EEEEc-CcCc--EEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc--cc
Q 016328 310 VYMLD-DEMK--WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--SA 376 (391)
Q Consensus 310 v~~~d-~~~~--W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~--~~ 376 (391)
++.+| .+.+ |+.- +.. ........++.||+.. .+ ..++.+|+++.+ |.
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~------------~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD------------GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT------------TEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC------------CEEEEEECCCCCEEeE
Confidence 45557 5554 8442 221 1112345667777765 32 279999998776 64
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.38 E-value=0.091 Score=49.50 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=71.4
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCc----ceeEEE--EC--------CCCCeeeCCCC
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH----SHVDIY--NF--------TDNTWGGRFDM 156 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~----~~~~~y--d~--------~~~~W~~~~~~ 156 (391)
....||..+..=..+|.++.+.....++.++++||++.......... ..+|.+ ++ ..-.|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 57799999987777788877777777788899999998764332110 045665 31 12258887764
Q ss_pred CCCCCcc-----eEEEEEe-CCEEEEE-eCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 157 PREMAHS-----HLGMVTD-GRYIYVV-TGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 157 p~~~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
|-..... -.+-+++ +..|||- -|.. .-.+.||.++.+|+...+
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccc
Confidence 4321111 2344455 7789983 2211 247899999999999985
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.27 E-value=0.059 Score=48.98 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=64.2
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC-C----CCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP-L----PVP 211 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~----~~~ 211 (391)
..+..||..+.+|..+..--. -.-.++... +++||+.|-..-... ....+-.||.++.+|+.++. . |.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCeeeecCCcccccCCCc
Confidence 469999999999999754321 112344444 778888775543331 25678899999999998875 2 333
Q ss_pred CCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecC
Q 016328 212 RYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP 261 (391)
Q Consensus 212 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 261 (391)
......... .+++++.|.... -......|+ ..+|+.+..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d---------Gs~W~~i~~ 130 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSAN--GSTFLMKYD---------GSSWSSIGS 130 (281)
T ss_pred EEEEEeeccCCceEEEeceecC--CCceEEEEc---------CCceEeccc
Confidence 322222222 346777776421 122233343 667887654
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.24 E-value=0.19 Score=45.64 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=61.8
Q ss_pred cceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecC-----C
Q 016328 189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-----I 262 (391)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-----~ 262 (391)
...+..||+.+.+|+.+..--... -..+... +++||+.|-...... .. ..+-.||.++.+|+.++. +
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~----~~--~~la~yd~~~~~w~~~~~~~s~~i 87 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGT----NS--SNLATYDFKNQTWSSLGGGSSNSI 87 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCC----Cc--eeEEEEecCCCeeeecCCcccccC
Confidence 578999999999999887442221 2233333 778888875543221 11 112334578999987755 2
Q ss_pred CCCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEcCcCcEEEcCC
Q 016328 263 PRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 324 (391)
Q Consensus 263 p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W~~v~~ 324 (391)
|.+......... .+.+++.|..... ..-+..| ...+|+.+..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence 333211111112 3357777665211 2237778 4668999875
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.06 E-value=0.93 Score=39.82 Aligned_cols=160 Identities=21% Similarity=0.228 Sum_probs=86.8
Q ss_pred eEeeecCCCCe--eecCCCCCCCCcee--eEeecCcccccccccccccccccccC--ceEEccCCCCCccCceEEEECCE
Q 016328 50 IASNWSPYHNS--IILPNNGPQKGENI--GVKTKKDVVPKRILPATFQDLPAPEL--KWEKMKAAPVPRLDGAAIQIKNL 123 (391)
Q Consensus 50 ~~~~~d~~~~~--~~lp~~~~r~~~g~--~~~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~ 123 (391)
.+..+|+.+++ ...+.. +...... ....++..... .....++++|+.+. .|+.-. +.+ ........++.
T Consensus 4 ~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~--~~~-~~~~~~~~~~~ 78 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGDGNLYALDAKTGKVLWRFDL--PGP-ISGAPVVDGGR 78 (238)
T ss_dssp EEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETTSEEEEEETTTSEEEEEEEC--SSC-GGSGEEEETTE
T ss_pred EEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCCCEEEEEECCCCCEEEEeec--ccc-ccceeeecccc
Confidence 57888888877 444331 1122222 23233322222 23447889998665 576543 222 12224677889
Q ss_pred EEEEeccCCCCCCcceeEEEECCCCC--ee-eCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 124 LYVFAGYGSIDYVHSHVDIYNFTDNT--WG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 124 vyv~GG~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
||+... .+.+..+|..+.+ |+ .....+....+.....++.++.+|+... ...+..+|+++.
T Consensus 79 v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~l~~~d~~tG 142 (238)
T PF13360_consen 79 VYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------SGKLVALDPKTG 142 (238)
T ss_dssp EEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------CSEEEEEETTTT
T ss_pred cccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------cCcEEEEecCCC
Confidence 998872 1259999977764 98 4433222112334455556888877653 367889999876
Q ss_pred c--eEECCCCCCCCC--------CceEEEECCEEEEEccC
Q 016328 201 K--WQDLPPLPVPRY--------APATQLWRGRLHVMGGS 230 (391)
Q Consensus 201 ~--W~~~~~~~~~r~--------~~~~~~~~~~iyv~GG~ 230 (391)
+ |+.-...+.... ....+..++.+|+..+.
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 5 776443332111 12333446788888653
No 63
>PRK13684 Ycf48-like protein; Provisional
Probab=94.90 E-value=3.4 Score=38.80 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=97.3
Q ss_pred ccCceEEccCC-CCCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEE
Q 016328 98 PELKWEKMKAA-PVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIY 175 (391)
Q Consensus 98 ~~~~W~~~~~~-p~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iy 175 (391)
...+|+++... ..+.....+..++ +.+|+.|.. ..+++=+-.-++|+.+..... -..+.+....+..|
T Consensus 117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~~~~g~~ 186 (334)
T PRK13684 117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRRSPDGKY 186 (334)
T ss_pred CCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEECCCCeE
Confidence 34589988532 2222333344443 456666532 235555556679998754322 23344555444445
Q ss_pred EEeCccCCCCCCCcceeEE-EeCCCCceEECCCCCCCCCCceEEE-ECCEEEEEccCCCCccCCCccceEeeeecCCccc
Q 016328 176 VVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE 253 (391)
Q Consensus 176 v~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~ 253 (391)
+..|..+ .++. .|....+|+.+.. +..+...+++. -++.++++|........ + +..-
T Consensus 187 v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~~~~-s-----------~d~G 245 (334)
T PRK13684 187 VAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQIRFN-D-----------PDDL 245 (334)
T ss_pred EEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEEEEc-c-----------CCCC
Confidence 5444333 2222 3455578998854 44444444443 46778888753211010 0 1234
Q ss_pred CCceeecCC-CCCCcc-eeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEE-cCcCcEEEcCCCCCCC
Q 016328 254 KEWRTEIPI-PRGGPH-RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DDEMKWKVLPSMPKPD 329 (391)
Q Consensus 254 ~~W~~~~~~-p~~~~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~W~~v~~~~~~~ 329 (391)
..|+.+... ...... ++.+.. ++.+++.|... . ++.- |...+|+.+.......
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~----------------------v~~S~d~G~tW~~~~~~~~~~ 302 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-T----------------------LLVSKDGGKTWEKDPVGEEVP 302 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCC-e----------------------EEEeCCCCCCCeECCcCCCCC
Confidence 577754321 111111 223333 56788876532 1 3332 3678999975322111
Q ss_pred CCceeeEEEECCEEEEEcccc
Q 016328 330 SHIEFAWVLVNNSIVIVGGTT 350 (391)
Q Consensus 330 ~~~~~~~~~~~~~l~i~GG~~ 350 (391)
......+..-++++|++|...
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cceEEEEEeCCCceEEECCCc
Confidence 122222233467888877654
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.89 E-value=0.29 Score=46.39 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=84.2
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCC---CCCCceEEEECCEEEEEccCCCCccCCCccceEeeee
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV---PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK 247 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 247 (391)
...+.+.+|.++ .-.++..|=+++. .+..+.. |......+..+....+++|+.. .+|
T Consensus 224 ~~plllvaG~d~------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk------------y~y 283 (514)
T KOG2055|consen 224 TAPLLLVAGLDG------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK------------YLY 283 (514)
T ss_pred CCceEEEecCCC------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce------------EEE
Confidence 457888888876 4567777777776 4444332 2222222233343677776532 234
Q ss_pred cCCcccCCceeecCC---CCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC
Q 016328 248 DGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP 323 (391)
Q Consensus 248 ~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~ 323 (391)
.||.++.+-+.+.++ +......-.+..++.++++-|.++. |+.+. .+++|..
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~----------------------I~lLhakT~eli~-- 339 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH----------------------IHLLHAKTKELIT-- 339 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce----------------------EEeehhhhhhhhh--
Confidence 555667777766553 2222222345667778888887654 77777 7777744
Q ss_pred CCCCCCCCceeeEEEEC-CEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328 324 SMPKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374 (391)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~ 374 (391)
.+..+-.-...+ ...+ ..|++.||+. +||.+|+.+..
T Consensus 340 s~KieG~v~~~~-fsSdsk~l~~~~~~G-------------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 340 SFKIEGVVSDFT-FSSDSKELLASGGTG-------------EVYVWNLRQNS 377 (514)
T ss_pred eeeeccEEeeEE-EecCCcEEEEEcCCc-------------eEEEEecCCcc
Confidence 332222211222 2234 4677777765 79999998776
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.68 E-value=3.2 Score=37.45 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=64.5
Q ss_pred CEEEEecCCCCcccceeEeeecCCCCe--eecCC-CCCCCCceeeEeecC-cc-cccccccccccccccccCceEE-ccC
Q 016328 34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKGENIGVKTKK-DV-VPKRILPATFQDLPAPELKWEK-MKA 107 (391)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~-~~~r~~~g~~~~~~~-~~-~~~~~~~~~~~~~d~~~~~W~~-~~~ 107 (391)
+.+|+.++.++ .+..||+.+++ ..+.. ..++ ++.....+ .. ... .....+..+|..+.+... ++.
T Consensus 1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIGTLPS 71 (300)
T ss_pred CcEEEEecCCC-----EEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEeccC
Confidence 35677777555 77888988776 33322 1122 22221111 11 111 112356677877665433 221
Q ss_pred CCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE-eCCEEEEEeCccCCC
Q 016328 108 APVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQ 184 (391)
Q Consensus 108 ~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~-~~~~iyv~GG~~~~~ 184 (391)
...+ ..++.. ++.+|+.++.+ ..+.+||+.+.+-. ..++.+ ....+++. -++++++++..+
T Consensus 72 ~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~--~~~~~~--~~~~~~~~~~dg~~l~~~~~~--- 135 (300)
T TIGR03866 72 GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVL--AEIPVG--VEPEGMAVSPDGKIVVNTSET--- 135 (300)
T ss_pred CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEE--eEeeCC--CCcceEEECCCCCEEEEEecC---
Confidence 1111 122222 34677665432 34888998875422 122211 11122333 356666665432
Q ss_pred CCCCcceeEEEeCCCCc
Q 016328 185 CRGPTAHTFVLDTETKK 201 (391)
Q Consensus 185 ~~~~~~~~~~yd~~~~~ 201 (391)
.+.+..||..+.+
T Consensus 136 ----~~~~~~~d~~~~~ 148 (300)
T TIGR03866 136 ----TNMAHFIDTKTYE 148 (300)
T ss_pred ----CCeEEEEeCCCCe
Confidence 1345567876654
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.33 E-value=3.1 Score=39.70 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=70.6
Q ss_pred CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC-CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
-.+.+++|.+.. -.++..|-++|. .+.++.- .+|-.....+..+....+++|. ..-++.||.++.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeecccc
Confidence 468888888753 236666666665 3333322 1111223333344446667664 467899999999
Q ss_pred ceEECCCCC--CCCCCceE-EEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCE
Q 016328 201 KWQDLPPLP--VPRYAPAT-QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDR 277 (391)
Q Consensus 201 ~W~~~~~~~--~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~ 277 (391)
+-+++.++- ..+.-+.. +...+.++++-|..+.-+ .. ...+++|-..-.++..........-+..
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~-----lL-------hakT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH-----LL-------HAKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEE-----ee-------hhhhhhhhheeeeccEEeeEEEecCCcE
Confidence 988887543 11222222 234455666666543211 11 1446666544444433322222233445
Q ss_pred EEEEeCC
Q 016328 278 LLVIGGQ 284 (391)
Q Consensus 278 i~v~GG~ 284 (391)
|++.||.
T Consensus 359 l~~~~~~ 365 (514)
T KOG2055|consen 359 LLASGGT 365 (514)
T ss_pred EEEEcCC
Confidence 7777775
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=94.18 E-value=5 Score=37.67 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred ccCceEEccC-CCCCcc-CceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC-CCCCCcceEEEEEeCCEE
Q 016328 98 PELKWEKMKA-APVPRL-DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYI 174 (391)
Q Consensus 98 ~~~~W~~~~~-~p~~r~-~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~~~~~i 174 (391)
.-.+|++... +|.... ..++...++..|++|.. ..+++=+-.-.+|+.+... ..| .......+.-++.+
T Consensus 74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~~~~i~~~~~~~~ 145 (334)
T PRK13684 74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLP-GSPYLITALGPGTA 145 (334)
T ss_pred CCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCC-CCceEEEEECCCcc
Confidence 3458998643 332222 22333345566766521 1133322234589987521 111 11122233334556
Q ss_pred EEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328 175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (391)
Q Consensus 175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 254 (391)
|+.|. ...+++=+-.-++|+.+.... .-..+.+....+..+++.|..+.-+. ..|....
T Consensus 146 ~~~g~---------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i~~-----------s~~~gg~ 204 (334)
T PRK13684 146 EMATN---------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNFYS-----------TWEPGQT 204 (334)
T ss_pred eeeec---------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceEEE-----------EcCCCCC
Confidence 66653 234566666678999886433 22334444444444444443322111 0123346
Q ss_pred CceeecCCCCCCcceeEE-EECCEEEEEeCC
Q 016328 255 EWRTEIPIPRGGPHRACV-VVDDRLLVIGGQ 284 (391)
Q Consensus 255 ~W~~~~~~p~~~~~~~~~-~~~~~i~v~GG~ 284 (391)
+|+.+........ .+++ .-+++++++|..
T Consensus 205 tW~~~~~~~~~~l-~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 205 AWTPHQRNSSRRL-QSMGFQPDGNLWMLARG 234 (334)
T ss_pred eEEEeeCCCcccc-eeeeEcCCCCEEEEecC
Confidence 7887754332222 2333 346778888653
No 68
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=93.42 E-value=5.3 Score=35.42 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred cccCceEE--ccCCCC-------CccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCC-----CCCC--CC
Q 016328 97 APELKWEK--MKAAPV-------PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-----DMPR--EM 160 (391)
Q Consensus 97 ~~~~~W~~--~~~~p~-------~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-----~~p~--~~ 160 (391)
...+.|++ |+..|. .-.-|+.+.+++.-|.+|=.++.-....--..|-+ +.|..-. ..+. ..
T Consensus 112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs--~~~~sp~~~vrr~i~sey~~ 189 (367)
T PF12217_consen 112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS--DAFASPGVFVRRIIPSEYER 189 (367)
T ss_dssp STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET--TTTT-TT--EEEE--GGG-T
T ss_pred cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec--ccccCCcceeeeechhhhcc
Confidence 34567865 455544 33458888998888888755433222111122222 2232211 0111 11
Q ss_pred CcceEEEEEeCCEEEEEe-CccCCCCCCCcceeEEEeCCCCceEECC-CCCCCCCCceEEEECCEEEEEccCCC------
Q 016328 161 AHSHLGMVTDGRYIYVVT-GQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGGSGE------ 232 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~------ 232 (391)
.-...++-.+++.||+.- |..+.. .-+.+.+-+.....|+.+. +-..-....-.+..++.||+||-...
T Consensus 190 ~AsEPCvkyY~g~LyLtTRgt~~~~---~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~ 266 (367)
T PF12217_consen 190 NASEPCVKYYDGVLYLTTRGTLPTN---PGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEG 266 (367)
T ss_dssp TEEEEEEEEETTEEEEEEEES-TTS------EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SST
T ss_pred ccccchhhhhCCEEEEEEcCcCCCC---CcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecccccccccc
Confidence 233456777899999974 322222 2577888888889999875 22222333445678999999985321
Q ss_pred ----CccC---CCccceEeeeecCCcccCCceeecC------CCCCCcceeE-EEECCEE-EEEeCCCC
Q 016328 233 ----NRYT---PEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHRAC-VVVDDRL-LVIGGQEG 286 (391)
Q Consensus 233 ----~~~~---~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~~~~~~~-~~~~~~i-~v~GG~~~ 286 (391)
++|. |.+-.-...+.++.++.-+|..+.. ......+.+. |+.++-| |+|||.+.
T Consensus 267 G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 267 GEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp T-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence 1221 1111112223444567777876532 2223333344 4557765 56899863
No 69
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.34 E-value=5.7 Score=35.55 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCEEEEEeccCCCCCCcceeEEEEC-----CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEE
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNF-----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~-----~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 195 (391)
++++|++.+.... .++.|.- ..++....-.||. +-.+.+.++++|.+|---. ..+++.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence 4589999887543 3555532 2333333334544 3345667788998887522 27899999
Q ss_pred eCCCCceE---ECCCCC------CCCCC---ceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc----cCCceee
Q 016328 196 DTETKKWQ---DLPPLP------VPRYA---PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL----EKEWRTE 259 (391)
Q Consensus 196 d~~~~~W~---~~~~~~------~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~----~~~W~~~ 259 (391)
|+.+++=. .++... ..... .-.++-.+-|+|+=...+.. -.+.+...||. ..+|..
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-------g~ivvskld~~tL~v~~tw~T- 166 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-------GNIVVSKLDPETLSVEQTWNT- 166 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-------CcEEEEeeCcccCceEEEEEe-
Confidence 99988744 444211 11111 22334445577764433211 11334444554 344554
Q ss_pred cCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEE
Q 016328 260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL 338 (391)
Q Consensus 260 ~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~ 338 (391)
+.++...+ .+.++=|.||++...+... ..-.+.|| .+++=..+ .++.+......+.+.
T Consensus 167 -~~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~~~-~i~f~~~~~~~~~l~ 225 (250)
T PF02191_consen 167 -SYPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEEDV-SIPFPNPYGNISMLS 225 (250)
T ss_pred -ccCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCceece-eeeeccccCceEeee
Confidence 33443332 3455667889987765331 11257888 55544432 344444333344444
Q ss_pred E---CCEEEEE
Q 016328 339 V---NNSIVIV 346 (391)
Q Consensus 339 ~---~~~l~i~ 346 (391)
. +.+||+.
T Consensus 226 YNP~dk~LY~w 236 (250)
T PF02191_consen 226 YNPRDKKLYAW 236 (250)
T ss_pred ECCCCCeEEEE
Confidence 4 3567764
No 70
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.42 E-value=6.3 Score=35.39 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=83.4
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCCC
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP 111 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 111 (391)
.+.||+.|- ....-+.||.++. ...|.+.--...|.++--.+.+--..+..+.+...|+.+..=+.++ .|.+
T Consensus 158 ~G~lWFt~q------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p-~P~~ 230 (353)
T COG4257 158 WGNLWFTGQ------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVP-QPNA 230 (353)
T ss_pred CccEEEeec------cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceec-CCCc
Confidence 356777764 1233478999988 4444432223356655544433333344456667777766333332 2222
Q ss_pred ccCce-EEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCC
Q 016328 112 RLDGA-AIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188 (391)
Q Consensus 112 r~~~~-~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 188 (391)
....+ -+.. .+++++. .....++.+|||.+.+|.+- +||..-+|....-+--.++++..- ..
T Consensus 231 ~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~sW~ey-pLPgs~arpys~rVD~~grVW~se--------a~ 295 (353)
T COG4257 231 LKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVTSWIEY-PLPGSKARPYSMRVDRHGRVWLSE--------AD 295 (353)
T ss_pred ccccccccccCccCcEEEe------ccCCceeeEeCcccccceee-eCCCCCCCcceeeeccCCcEEeec--------cc
Confidence 11111 1111 2456664 11234699999999999985 344322343333333445666631 12
Q ss_pred cceeEEEeCCCCceEECC
Q 016328 189 TAHTFVLDTETKKWQDLP 206 (391)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~ 206 (391)
.+.+.+|||++.+.+.++
T Consensus 296 agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 AGAIGRFDPETARFTVLP 313 (353)
T ss_pred cCceeecCcccceEEEec
Confidence 677899999999988765
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.41 E-value=6.6 Score=34.82 Aligned_cols=86 Identities=21% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (391)
++.+|+.--. ...++++|+.+++-+.+. .+. ..+++. -++.+|+... .....+|+.
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD 68 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence 4677877322 346999999988765532 221 234444 3788988853 334567999
Q ss_pred CCceEECCCCC-----CCCCCceEEEECCEEEEEc
Q 016328 199 TKKWQDLPPLP-----VPRYAPATQLWRGRLHVMG 228 (391)
Q Consensus 199 ~~~W~~~~~~~-----~~r~~~~~~~~~~~iyv~G 228 (391)
+.+++.+...+ ..+..-.++--++.||+--
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 99998886542 2233333344577888764
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.05 E-value=5.6 Score=35.27 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=58.5
Q ss_pred ccccccccccCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC---CCCcce
Q 016328 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSH 164 (391)
Q Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~~~r~~ 164 (391)
..++.+++.+..-+... .+. -.+++.. ++.+|+.... ...++|+.+++++.+...+. +..+.+
T Consensus 22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 46778888776543322 222 2333333 6788887642 25667999999988765531 234445
Q ss_pred EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC
Q 016328 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205 (391)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~ 205 (391)
-.++.-++.||+.--............++++++. .+.+.+
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 4555567889886422221111011679999998 555544
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.00 E-value=7.3 Score=37.46 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred ECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC--CCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328 120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT 197 (391)
Q Consensus 120 ~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~ 197 (391)
.++.+++.|+-+. -+..+|..+.. .. ..+.. .--| +.++...+++|++.||+++.. -.||.
T Consensus 121 ~d~t~l~s~sDd~------v~k~~d~s~a~-v~-~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~v--------rl~Dt 183 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK------VVKYWDLSTAY-VQ-AELSGHTDYVR-CGDISPANDHIVVTGSYDGKV--------RLWDT 183 (487)
T ss_pred cCCeEEEecCCCc------eEEEEEcCCcE-EE-EEecCCcceeE-eeccccCCCeEEEecCCCceE--------EEEEe
Confidence 4788999887542 13344544443 22 11211 1012 234445678999999998743 46887
Q ss_pred CCC-ceEECCCCCCCCCCceEE-EECCE-EEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEE
Q 016328 198 ETK-KWQDLPPLPVPRYAPATQ-LWRGR-LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV 274 (391)
Q Consensus 198 ~~~-~W~~~~~~~~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~ 274 (391)
.+. .|.. .+.....--.+. +-++. |.-.|| +.+.+||+. ... +.+..+..-....+|..+
T Consensus 184 R~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~--qll~~~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 184 RSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGG--QLLTSMFNHNKTVTCLRL 246 (487)
T ss_pred ccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCc--eehhhhhcccceEEEEEe
Confidence 776 3432 222211111222 22334 444444 357888863 000 011111100001122222
Q ss_pred --CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEcCcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccC
Q 016328 275 --DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTE 351 (391)
Q Consensus 275 --~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~ 351 (391)
++.=++-||.++. +-.|| +..|+.+..+..|-.-...+ +..+++-.++|+.++
T Consensus 247 ~s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG 301 (487)
T ss_pred ecCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence 4466677776643 45554 34577776654443333333 445678888888764
No 74
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=8.3 Score=33.93 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=64.0
Q ss_pred CeeeCCCCCC---CCCcce-EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE--CC
Q 016328 149 TWGGRFDMPR---EMAHSH-LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RG 222 (391)
Q Consensus 149 ~W~~~~~~p~---~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~ 222 (391)
-|+...||.. ++|.-+ ..+..-.|.|+..|| -..+++.|.++.+-+..-. -..-+-|+++.- ++
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCc
Confidence 4877666544 223222 233335788998887 4678999999998776421 233455666653 33
Q ss_pred EEEEEccCCCCccCCCccceEeeeecCCcccCCceee------cCCCCCCc--ceeEEEECCEEEEEeCC
Q 016328 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE------IPIPRGGP--HRACVVVDDRLLVIGGQ 284 (391)
Q Consensus 223 ~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~------~~~p~~~~--~~~~~~~~~~i~v~GG~ 284 (391)
+| +.|+.++ .+..|+. ++.+=..+ +.+.|+.. -.++...+...+|+||-
T Consensus 170 qi-lsG~EDG-----tvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 170 QI-LSGAEDG-----TVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred ce-eecCCCc-----cEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 33 3444433 4677773 34433322 22333222 23677778888888875
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.80 E-value=18 Score=35.58 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=39.6
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+++-+.+...+. ........-.+.+|++....++ ..+++.+|.++.+.+.+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 459999999887777665543 1222233333455665543322 4679999999998887764
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.40 E-value=13 Score=33.39 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=36.3
Q ss_pred EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCce
Q 016328 123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW 202 (391)
Q Consensus 123 ~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W 202 (391)
++|+.++.+ ..+.+||+.+++-...-..... .+ .......+..+|+.++. ...+..||+.+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCcE
Confidence 567777654 3588899887754332121111 12 11222223467777653 35678899988765
Q ss_pred EE
Q 016328 203 QD 204 (391)
Q Consensus 203 ~~ 204 (391)
..
T Consensus 66 ~~ 67 (300)
T TIGR03866 66 IG 67 (300)
T ss_pred EE
Confidence 43
No 77
>PRK04922 tolB translocation protein TolB; Provisional
Probab=89.78 E-value=21 Score=34.82 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=38.1
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+++-+.+...+. ..........+.+|++....++ ..+++.+|+.+.+-+.+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 458999999888777765543 1122222233446655433222 3679999999888776653
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=89.52 E-value=18 Score=35.32 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=104.2
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeC-------CCCCCCCCcceEEEEEe-------CCEEEEEeCccCCCCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-------FDMPREMAHSHLGMVTD-------GRYIYVVTGQYGPQCR 186 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-------~~~p~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~ 186 (391)
++.|+|+.|. ...-+||-+.-+|.+. -+|.. . .+|.+.+. +...|+.-+.++.
T Consensus 226 g~~iLvvsg~-------aqakl~DRdG~~~~e~~KGDQYI~Dm~n--T-KGHia~lt~g~whP~~k~~FlT~s~Dgt--- 292 (641)
T KOG0772|consen 226 GDQILVVSGS-------AQAKLLDRDGFEIVEFSKGDQYIRDMYN--T-KGHIAELTCGCWHPDNKEEFLTCSYDGT--- 292 (641)
T ss_pred CCeEEEEecC-------cceeEEccCCceeeeeeccchhhhhhhc--c-CCceeeeeccccccCcccceEEecCCCc---
Confidence 6788888885 2356778777777663 23333 2 23333332 2346666665542
Q ss_pred CCcceeEEEeCCCCceEECC--CCCCCCCCceEEEE--CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC
Q 016328 187 GPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI 262 (391)
Q Consensus 187 ~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 262 (391)
-.+|-.+-...+-+.+. ++...|...+.|.+ ++++ |.+|+.+ .++..|+ ...|..-+.+
T Consensus 293 ---lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~---------~~~~~v~p~~ 355 (641)
T KOG0772|consen 293 ---LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWD---------KGSRTVRPVM 355 (641)
T ss_pred ---EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC----Cceeeee---------cCCcccccce
Confidence 22332222222333333 33355666666655 4556 5556543 2466776 2344432222
Q ss_pred -----CCCCcceeEE--EECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-C---cCcEEEcCCCCCCCCC
Q 016328 263 -----PRGGPHRACV--VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D---EMKWKVLPSMPKPDSH 331 (391)
Q Consensus 263 -----p~~~~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~---~~~W~~v~~~~~~~~~ 331 (391)
...+...+++ ..++++++--|.+.. -.+|.++ . -..|+-+..+ -..
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--------------------LKvWDLrq~kkpL~~~tgL~t~---~~~ 412 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--------------------LKVWDLRQFKKPLNVRTGLPTP---FPG 412 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccCCCc--------------------eeeeeccccccchhhhcCCCcc---CCC
Confidence 2222223444 457787777776532 2367665 2 2456665432 222
Q ss_pred ceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc-cccCCCc
Q 016328 332 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV-SAFYPFN 381 (391)
Q Consensus 332 ~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~lp~~ 381 (391)
.. ++...+.+|++.|-...++... ..++.||+.+-. ..+++..
T Consensus 413 td-c~FSPd~kli~TGtS~~~~~~~------g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 413 TD-CCFSPDDKLILTGTSAPNGMTA------GTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred Cc-cccCCCceEEEecccccCCCCC------ceEEEEeccceeeEEEecCC
Confidence 22 3467788888877665544322 257888887666 5555554
No 79
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.50 E-value=17 Score=33.50 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=86.6
Q ss_pred ccCceEEcc-CCCCCccCceEEEE-CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE-EeCCEE
Q 016328 98 PELKWEKMK-AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYI 174 (391)
Q Consensus 98 ~~~~W~~~~-~~p~~r~~~~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~-~~~~~i 174 (391)
...+|++++ +.+.|...+.+..+ ++.++++|.. ..+++=.-.-.+|+.+..-.. . .-..+. .-++++
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~--g-s~~~~~r~~dG~~ 158 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS--G-SINDITRSSDGRY 158 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-E
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc--c-eeEeEEECCCCcE
Confidence 456999985 23344444555444 5577777642 235555556679998643222 1 222233 346665
Q ss_pred EEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328 175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (391)
Q Consensus 175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 254 (391)
++++. .+ +-+...|+....|+........|-......-++.|+++. ..+.-...+ ......
T Consensus 159 vavs~-~G-------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~----------~~~~~~ 219 (302)
T PF14870_consen 159 VAVSS-RG-------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD----------DPDDGE 219 (302)
T ss_dssp EEEET-TS-------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-----------TTEEE
T ss_pred EEEEC-cc-------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc----------CCCCcc
Confidence 55553 22 223457888889998765444444444445567787765 221100000 012345
Q ss_pred Cceee-cCCCCCCcce-eEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCC-CCCC
Q 016328 255 EWRTE-IPIPRGGPHR-ACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM-PKPD 329 (391)
Q Consensus 255 ~W~~~-~~~p~~~~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~-~~~~ 329 (391)
+|++. .+......+. .++.- ++.+++.||.. .+++=. ..++|++.... +.|-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-----------------------~l~~S~DgGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-----------------------TLLVSTDGGKTWQKDRVGENVPS 276 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGGTTSSS
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------cEEEeCCCCccceECccccCCCC
Confidence 66652 3333344432 22332 57899998863 144443 77899998532 2222
Q ss_pred CCceeeEEEECCEEEEEcccc
Q 016328 330 SHIEFAWVLVNNSIVIVGGTT 350 (391)
Q Consensus 330 ~~~~~~~~~~~~~l~i~GG~~ 350 (391)
... .-...-+++-|++|-..
T Consensus 277 n~~-~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 277 NLY-RIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp ----EEEEEETTEEEEE-STT
T ss_pred ceE-EEEEcCCCceEEECCCc
Confidence 211 12234557899998653
No 80
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.43 E-value=4.7 Score=36.17 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=63.5
Q ss_pred EEEEE-eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceE
Q 016328 165 LGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS 243 (391)
Q Consensus 165 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 243 (391)
-+... .++.||.--|..+ .+.+.+||+++.+=....++|..-.+-.++.++++||.+-=.+.. .-.|+
T Consensus 48 QGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~-----~f~yd 116 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGT-----GFVYD 116 (264)
T ss_dssp EEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSE-----EEEEE
T ss_pred ccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCe-----EEEEc
Confidence 34555 6789999888765 578899999999877667788877888899999999999644322 22222
Q ss_pred eeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCC
Q 016328 244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 285 (391)
Q Consensus 244 ~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 285 (391)
+. +.+.+...+....+-+.+.-+..+++--|.+
T Consensus 117 -------~~--tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 117 -------PN--TLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp -------TT--TTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred -------cc--cceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 22 3344443333333446666677788877743
No 81
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.41 E-value=4.2 Score=37.82 Aligned_cols=248 Identities=15% Similarity=0.146 Sum_probs=114.2
Q ss_pred cccccccccCceEEccCCCCCccCceEEEE-CCEEEEEecc---CCCCCCcceeEEEECCCCC--eee-CCCCCC---CC
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGY---GSIDYVHSHVDIYNFTDNT--WGG-RFDMPR---EM 160 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~vyv~GG~---~~~~~~~~~~~~yd~~~~~--W~~-~~~~p~---~~ 160 (391)
.++.+|..+++- +..++..-..+.+..- ++.+|++.=+ ...+...+-+++||.+|-+ ++. +|+-|. ..
T Consensus 18 rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 677888777653 4444444444433332 4578876543 1223345679999999874 544 332211 01
Q ss_pred CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCC---ccCC
Q 016328 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN---RYTP 237 (391)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~ 237 (391)
.+...++...+..+||.- ..+..++-+-|.+.++--. .++.|-|.+..-.-++.++.+.|-..- .+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N-------~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQN-------FTPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp -GGGEEE-TTSSEEEEEE-------ESSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETS
T ss_pred cccceEEccCCcEEEEEc-------cCCCCeEEEEECCCCceee--eecCCCEEEEEecCCCceEEEecCCceEEEEECC
Confidence 122333444556777762 3457889999999887543 333343333333334444444432100 0000
Q ss_pred CccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEE--eCCCCCCCcCCCCCccccCcCCceecCcEEEEc-
Q 016328 238 EVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVI--GGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD- 314 (391)
Q Consensus 238 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d- 314 (391)
.-+.-.....-|++..+-.-.-+...+.....-...++|+||-+ +|.... +......+.
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~------------------~~~~~~~~t~ 228 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK------------------FGKPWSLLTD 228 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE------------------EEEEEESS-H
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc------------------ccCcccccCc
Confidence 00000111112344444433333333333233456778888884 443211 111111111
Q ss_pred --CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEcc--ccCCCCcccceeEecceEEEecCccc-cccCC
Q 016328 315 --DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNTLV-SAFYP 379 (391)
Q Consensus 315 --~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG--~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~lp 379 (391)
....|..-.-.. .++-.-.++||+..= ..+.++. ...+||.||+++.+ ..++|
T Consensus 229 ~e~~~~WrPGG~Q~-------~A~~~~~~rlyvLMh~g~~gsHKd-----pgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 229 AEKADGWRPGGWQL-------IAYHAASGRLYVLMHQGGEGSHKD-----PGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp HHHHTTEEE-SSS--------EEEETTTTEEEEEEEE--TT-TTS------EEEEEEEETTTTEEEEEEE
T ss_pred cccccCcCCcceee-------eeeccccCeEEEEecCCCCCCccC-----CceEEEEEECCCCeEEEEEe
Confidence 124566533111 222224578887742 2223322 23699999999888 55544
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.40 E-value=2.7 Score=37.62 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred ceeeEeecC--cccccccccccccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC
Q 016328 72 ENIGVKTKK--DVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT 149 (391)
Q Consensus 72 ~g~~~~~~~--~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~ 149 (391)
.|+.....+ +...|.+=.+.+..+|+.+++=.+..++|..-.+=.++.++++||..-=. ....++||+.+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~t-- 119 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNT-- 119 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTT--
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec------CCeEEEEcccc--
Confidence 456554444 55555544557889999998876667788777788889999999998522 24589999864
Q ss_pred eeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc
Q 016328 150 WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK 201 (391)
Q Consensus 150 W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~ 201 (391)
.+.+...+. +..+.+++..+..|++.-| ++.++.+||++-+
T Consensus 120 l~~~~~~~y--~~EGWGLt~dg~~Li~SDG---------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 120 LKKIGTFPY--PGEGWGLTSDGKRLIMSDG---------SSRLYFLDPETFK 160 (264)
T ss_dssp TEEEEEEE---SSS--EEEECSSCEEEE-S---------SSEEEEE-TTT-S
T ss_pred ceEEEEEec--CCcceEEEcCCCEEEEECC---------ccceEEECCcccc
Confidence 566555554 3456778877888888755 6789999998643
No 83
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.37 E-value=3.4 Score=32.69 Aligned_cols=82 Identities=12% Similarity=0.244 Sum_probs=55.7
Q ss_pred EeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC---CCCCCCCceEEEECCEEEEEccCCCCccCCCccceEee
Q 016328 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA 245 (391)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 245 (391)
..+|-+|-..-. .. .....+.+||.++++|+.++. ..........+.++|+|-++.-..... ....+.|-++
T Consensus 3 cinGvly~~a~~-~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEE-CC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 467777766544 11 125788999999999998863 335566778888999998886543221 2346777765
Q ss_pred eecCCcccCCceee
Q 016328 246 VKDGKPLEKEWRTE 259 (391)
Q Consensus 246 ~~~~d~~~~~W~~~ 259 (391)
|..+.+|+..
T Consensus 78 ----D~~k~~Wsk~ 87 (129)
T PF08268_consen 78 ----DYEKQEWSKK 87 (129)
T ss_pred ----ccccceEEEE
Confidence 4567899864
No 84
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.24 E-value=16 Score=32.73 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=90.0
Q ss_pred ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC----------CCcceEEEEEe
Q 016328 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE----------MAHSHLGMVTD 170 (391)
Q Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----------~~r~~~~~~~~ 170 (391)
+..+.-.||.+-.+.+.++.++.+|---. ..+.+.+||+.+++=.....||.. .+-...-.++.
T Consensus 58 ~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD 131 (250)
T PF02191_consen 58 RSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD 131 (250)
T ss_pred CCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEc
Confidence 33333445666667777888888877533 246699999999875532233320 01123556777
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCC----CceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeee
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV 246 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 246 (391)
++=|+|+=....... .-.+-+.||++ .+|.. ..+.+.. ..+.++.|.||++-...... ....
T Consensus 132 E~GLWvIYat~~~~g---~ivvskld~~tL~v~~tw~T--~~~k~~~-~naFmvCGvLY~~~s~~~~~--------~~I~ 197 (250)
T PF02191_consen 132 ENGLWVIYATEDNNG---NIVVSKLDPETLSVEQTWNT--SYPKRSA-GNAFMVCGVLYATDSYDTRD--------TEIF 197 (250)
T ss_pred CCCEEEEEecCCCCC---cEEEEeeCcccCceEEEEEe--ccCchhh-cceeeEeeEEEEEEECCCCC--------cEEE
Confidence 777888754433221 23455678775 45763 3333333 34667788999997554221 1223
Q ss_pred ecCCcccCCceee-cCCCCCCcceeEEEE---CCEEEEEe
Q 016328 247 KDGKPLEKEWRTE-IPIPRGGPHRACVVV---DDRLLVIG 282 (391)
Q Consensus 247 ~~~d~~~~~W~~~-~~~p~~~~~~~~~~~---~~~i~v~G 282 (391)
+.||..+++=..+ -+++......+++.. +.+||+.-
T Consensus 198 yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 198 YAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred EEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 4455555544432 234444434455544 56788874
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.20 E-value=14 Score=32.13 Aligned_cols=62 Identities=5% Similarity=0.001 Sum_probs=29.9
Q ss_pred CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeC-CEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
+.+++.++.+ ..+.+||+.+.+-... +... ...-.++.... +.+++.|.. ...+..||..+.
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~--------~~~i~i~d~~~~ 167 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTT--LRGH-TDWVNSVAFSPDGTFVASSSQ--------DGTIKLWDLRTG 167 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEE--eccC-CCcEEEEEEcCcCCEEEEEcC--------CCcEEEEEcccc
Confidence 3666666532 3488899875432221 1110 11122333333 445544432 245778888643
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=89.13 E-value=23 Score=34.50 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=39.4
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+++.+.+...+. ..........+.+|++....++ ..+++.+|.++..-+.+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccC
Confidence 469999999998887765554 2222233333445655443222 4678999999888777654
No 87
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=88.90 E-value=23 Score=34.08 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=37.7
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+++-+.+...+. ..........+..|++....++ ..+++.+|+.+...+.+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence 458999999887766654433 2222222223345665543222 3678999999888777754
No 88
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.88 E-value=26 Score=34.79 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred hheecCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCC--CC-----CceeeEeecCccccccccccccccccccc
Q 016328 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP--QK-----GENIGVKTKKDVVPKRILPATFQDLPAPE 99 (391)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~--r~-----~~g~~~~~~~~~~~~~~~~~~~~~~d~~~ 99 (391)
-++.++.+|+... + ..+..+|+++.+ .......+ +. ..+.++...+.+.-+ .....+..+|..+
T Consensus 57 Pvv~~g~vy~~~~-~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~-~~~g~v~AlD~~T 129 (488)
T cd00216 57 PLVVDGDMYFTTS-H-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG-TFDGRLVALDAET 129 (488)
T ss_pred CEEECCEEEEeCC-C-----CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe-cCCCeEEEEECCC
Confidence 4566888888654 2 367888998887 33322111 10 112222110211111 1234678888775
Q ss_pred C--ceEEccCCCC-Cc--cCceEEEECCEEEEEeccCCCC---CCcceeEEEECCCCC--eee
Q 016328 100 L--KWEKMKAAPV-PR--LDGAAIQIKNLLYVFAGYGSID---YVHSHVDIYNFTDNT--WGG 152 (391)
Q Consensus 100 ~--~W~~~~~~p~-~r--~~~~~~~~~~~vyv~GG~~~~~---~~~~~~~~yd~~~~~--W~~ 152 (391)
. .|+.-...+. .. ...+.++.++.+|+ |..+... .....+..+|..+.+ |+.
T Consensus 130 G~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 130 GKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 5 6876432221 11 12333555666665 4322211 123468999998764 875
No 89
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.33 E-value=25 Score=33.88 Aligned_cols=117 Identities=9% Similarity=0.148 Sum_probs=55.8
Q ss_pred ccCceEEccCCC-CCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCC--CCCCc-----------
Q 016328 98 PELKWEKMKAAP-VPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP--REMAH----------- 162 (391)
Q Consensus 98 ~~~~W~~~~~~p-~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~~~r----------- 162 (391)
...+|++++..+ .|-.......++ +.++++|.. ..+++=+-...+|+.+...+ .++.+
T Consensus 164 gG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~ 236 (398)
T PLN00033 164 GGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASY 236 (398)
T ss_pred CCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEcccccccccccccccccccccce
Confidence 346899875432 222233344444 467777732 22555555567899862111 11111
Q ss_pred ---ceEEEE-EeCCEEEEEeCccCCCCCCCcceeEE-EeCCCCceEECCCCCCCCCCceEEEECCEEEEEccC
Q 016328 163 ---SHLGMV-TDGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 230 (391)
Q Consensus 163 ---~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 230 (391)
...++. ..++.++++|-. -.+++ .|.....|+.+......+-.......++.++++|..
T Consensus 237 y~Gsf~~v~~~~dG~~~~vg~~---------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 237 YTGTFSTVNRSPDGDYVAVSSR---------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred eccceeeEEEcCCCCEEEEECC---------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 111222 234455555421 12333 444444599886433333222233457788888743
No 90
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.80 E-value=21 Score=32.48 Aligned_cols=165 Identities=17% Similarity=0.145 Sum_probs=84.5
Q ss_pred eCCCCCCCCCcceEEEEEeCCEEEEEeCcc-------CCCC-------CCCcceeEEEeCCCCc----eEECCCCCCCCC
Q 016328 152 GRFDMPREMAHSHLGMVTDGRYIYVVTGQY-------GPQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRY 213 (391)
Q Consensus 152 ~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~-------~~~~-------~~~~~~~~~yd~~~~~----W~~~~~~~~~r~ 213 (391)
.+.+.|..-.-.+-++..+++.|| |||.- +... .+..+-++.||.++++ |++--.-+...+
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~Wa 105 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWA 105 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccc
Confidence 355555533344557777888777 68862 1110 0124678999999887 665332222222
Q ss_pred CceEE----EECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCC
Q 016328 214 APATQ----LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFM 289 (391)
Q Consensus 214 ~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~ 289 (391)
+-..- .++++|++.-+-. ......|. .|..+.+=+.+..-|... .+.+.|...|-+ .+...
T Consensus 106 GEVSdIlYdP~~D~LLlAR~DG----h~nLGvy~-----ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~- 170 (339)
T PF09910_consen 106 GEVSDILYDPYEDRLLLARADG----HANLGVYS-----LDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHK- 170 (339)
T ss_pred cchhheeeCCCcCEEEEEecCC----cceeeeEE-----EcccCCceeeccCCCCcC---ceEeeeeEEEec--ccccc-
Confidence 21111 2467888774311 11233344 356666666655444332 455556555544 22111
Q ss_pred cCCCCCccccCcCCceecCcEEEEc-CcCcE--EEcCCC------CCCCCCceeeEEEECCEEEEE--ccc
Q 016328 290 AKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV--GGT 349 (391)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W--~~v~~~------~~~~~~~~~~~~~~~~~l~i~--GG~ 349 (391)
=...+.++| .+++| +..+.- +.-+...+ +++...+++|.| ||.
T Consensus 171 ----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G-~~~s~ynR~faF~rGGi 224 (339)
T PF09910_consen 171 ----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG-AMASAYNRLFAFVRGGI 224 (339)
T ss_pred ----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccc-cEEEEeeeEEEEEeccE
Confidence 134589999 89999 333211 11122222 346677777655 553
No 91
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.26 E-value=31 Score=33.81 Aligned_cols=104 Identities=9% Similarity=0.015 Sum_probs=57.3
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~ 170 (391)
.++.+|..+.+-+.+...+..-...+..--+..|++....++ ..+++.+|..+++.+.+..... .-...+....
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wSpD 316 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA--IDTEPSWHPD 316 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC--CccceEECCC
Confidence 577778777666666544322111111112345655543332 2459999999998887654322 1112222223
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (391)
+..|++.....+ ..+++.+|.++.+++.+.
T Consensus 317 G~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 317 GKSLIFTSERGG------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence 445555432221 368999999999888774
No 92
>smart00284 OLF Olfactomedin-like domains.
Probab=87.16 E-value=22 Score=31.87 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCEEEEEeccCCCCCCcceeEEEEC----CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (391)
++++|++-+.... .+.++.|.- ...++.+.-.||. +-.+.+.++++|.+|.--. ....+.+||
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD 100 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence 4678988665311 234666642 2334433334554 3456678899999998532 157899999
Q ss_pred CCCCceEECCCCC
Q 016328 197 TETKKWQDLPPLP 209 (391)
Q Consensus 197 ~~~~~W~~~~~~~ 209 (391)
+.+++=.....+|
T Consensus 101 L~t~~v~~~~~Lp 113 (255)
T smart00284 101 LTTETYQKEPLLN 113 (255)
T ss_pred CCCCcEEEEEecC
Confidence 9998754433344
No 93
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.85 E-value=10 Score=35.21 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=77.3
Q ss_pred ccccccccccC-----ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC-eeeCCCCCCCCCcc
Q 016328 90 ATFQDLPAPEL-----KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHS 163 (391)
Q Consensus 90 ~~~~~~d~~~~-----~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~r~ 163 (391)
..+..|+.... +++.+.....+-.-.+++.+++++.+.-| +.+.+|++..++ +...+.+..+ -.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~--~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSP--FY 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BS--SS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecce--EE
Confidence 35666766663 55555554444445777888999777665 348888888888 8888777663 35
Q ss_pred eEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEE-CCEEEEE
Q 016328 164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVM 227 (391)
Q Consensus 164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~ 227 (391)
..++.+.++.|++---.. .-.+..|+.+.++-..++.-..++...++..+ ++..++.
T Consensus 132 i~sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp EEEEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred EEEEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 667778888766542211 34566788877778888766667776666666 6553333
No 94
>PRK00178 tolB translocation protein TolB; Provisional
Probab=86.40 E-value=33 Score=33.25 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=38.0
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+++-+.+...+. .-........+.+|++....++ ..+++.+|..+.+.+.+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG--LNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC--CcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence 359999999988877755443 1111222223445554432221 3689999999998887764
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.73 E-value=12 Score=34.75 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=59.3
Q ss_pred CEEEEEecc-CCC--CCCc-ceeEEEECCCC-----CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCccee
Q 016328 122 NLLYVFAGY-GSI--DYVH-SHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT 192 (391)
Q Consensus 122 ~~vyv~GG~-~~~--~~~~-~~~~~yd~~~~-----~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 192 (391)
...+|+|-. ... .... ..+..|+...+ +++.+..... .-.-.+++.++++|.+.-| +.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g----------~~l 109 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG----------NKL 109 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET----------TEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec----------CEE
Confidence 456666643 211 1112 56889998885 5565544333 2234677888999666654 567
Q ss_pred EEEeCCCCc-eEECCCCCCCCCCceEEEECCEEEEE
Q 016328 193 FVLDTETKK-WQDLPPLPVPRYAPATQLWRGRLHVM 227 (391)
Q Consensus 193 ~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~ 227 (391)
..|+...++ +...+.+..+-...++.+.++.|++-
T Consensus 110 ~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 110 YVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVG 145 (321)
T ss_dssp EEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEE
T ss_pred EEEEccCcccchhhheecceEEEEEEeccccEEEEE
Confidence 788888777 88887766666667777888876654
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.50 E-value=37 Score=32.89 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=66.2
Q ss_pred EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEE-EeCccCCCCCCCcceeEEEeC
Q 016328 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYV-VTGQYGPQCRGPTAHTFVLDT 197 (391)
Q Consensus 119 ~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~~yd~ 197 (391)
..++.|++.||+++ .+-.||..+.+ ..+-.+..+.+- .--+++-++.+++ .|| +.+-.+|.
T Consensus 163 ~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pV-e~vl~lpsgs~iasAgG----------n~vkVWDl 224 (487)
T KOG0310|consen 163 PANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPV-ESVLALPSGSLIASAGG----------NSVKVWDL 224 (487)
T ss_pred cCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCce-eeEEEcCCCCEEEEcCC----------CeEEEEEe
Confidence 34678999999975 36778888774 333344443221 1223333434444 444 55667777
Q ss_pred CCCceEECCCCCCCCCCc-----eEEEE-CCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCC--CCCCcce
Q 016328 198 ETKKWQDLPPLPVPRYAP-----ATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI--PRGGPHR 269 (391)
Q Consensus 198 ~~~~W~~~~~~~~~r~~~-----~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~~~~~ 269 (391)
.+.. .++..+..| ++... ++.-.+.||.+. .++.|+ +..|+.+-.+ |.+-.
T Consensus 225 ~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd---------~t~~Kvv~s~~~~~pvL-- 283 (487)
T KOG0310|consen 225 TTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD---------TTNYKVVHSWKYPGPVL-- 283 (487)
T ss_pred cCCc-----eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE---------ccceEEEEeeeccccee--
Confidence 6443 222222212 12221 334455666543 356665 3344444332 33332
Q ss_pred eEE-EECCEEEEEeCCCCC
Q 016328 270 ACV-VVDDRLLVIGGQEGD 287 (391)
Q Consensus 270 ~~~-~~~~~i~v~GG~~~~ 287 (391)
+++ .-++.-.++|..++-
T Consensus 284 siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred eEEecCCCceEEEecccce
Confidence 333 347788888887643
No 97
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.11 E-value=39 Score=32.85 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=44.4
Q ss_pred EEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeC
Q 016328 118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT 197 (391)
Q Consensus 118 ~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~ 197 (391)
+.++++||.+.-.++-+. ++.-|++.+--++-.+...--+| -+-.+++=.||- ..-++|.|||
T Consensus 232 mIV~~RvYFlsD~eG~Gn----lYSvdldGkDlrrHTnFtdYY~R----~~nsDGkrIvFq---------~~GdIylydP 294 (668)
T COG4946 232 MIVGERVYFLSDHEGVGN----LYSVDLDGKDLRRHTNFTDYYPR----NANSDGKRIVFQ---------NAGDIYLYDP 294 (668)
T ss_pred eEEcceEEEEecccCccc----eEEeccCCchhhhcCCchhcccc----ccCCCCcEEEEe---------cCCcEEEeCC
Confidence 567999999987766543 55567766655554444431122 223455555552 1357899999
Q ss_pred CCCceEECC
Q 016328 198 ETKKWQDLP 206 (391)
Q Consensus 198 ~~~~W~~~~ 206 (391)
+++.-+.+.
T Consensus 295 ~td~lekld 303 (668)
T COG4946 295 ETDSLEKLD 303 (668)
T ss_pred CcCcceeee
Confidence 998887764
No 98
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=83.77 E-value=26 Score=29.84 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=47.2
Q ss_pred EEEECCEEEEEeccCCCCCCcceeEEEECCCCCee--eCC----CCCCCCCcceEEEEEeC-CEEEEEeCccCCCCCCCc
Q 016328 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG--GRF----DMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPT 189 (391)
Q Consensus 117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~--~~~----~~p~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~ 189 (391)
+....+++|+|-|. .+++++....... .+. .+|. .-..+....+ +++|+|-|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg---------- 70 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG---------- 70 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC----------
Confidence 34456899999773 3677765422111 111 1222 1222333333 89999954
Q ss_pred ceeEEEeCCCCceE---ECCCCCCC---CCCceEEEE--CCEEEEEccCC
Q 016328 190 AHTFVLDTETKKWQ---DLPPLPVP---RYAPATQLW--RGRLHVMGGSG 231 (391)
Q Consensus 190 ~~~~~yd~~~~~W~---~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~ 231 (391)
+..|+||..+..+. .+.....+ ..--++... ++++|+|-|..
T Consensus 71 ~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~ 120 (194)
T cd00094 71 DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK 120 (194)
T ss_pred CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE
Confidence 56788887642221 11111111 212233333 68999998854
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.22 E-value=31 Score=30.50 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=58.3
Q ss_pred EEEEEeCccCCCCCCCcceeEEEeCCCCceEECC----------------CCCCCCCCceEEEECCEEEEEccCCCCccC
Q 016328 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP----------------PLPVPRYAPATQLWRGRLHVMGGSGENRYT 236 (391)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~----------------~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 236 (391)
+=++.||++. +-.+|.||-. +|..-. ....++..-+.+..+++++|+--.
T Consensus 176 krlvSgGcDn------~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~------ 241 (299)
T KOG1332|consen 176 KRLVSGGCDN------LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD------ 241 (299)
T ss_pred ceeeccCCcc------ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec------
Confidence 4478888765 5566777654 564331 233566666666667777776311
Q ss_pred CCccceEeeeecCCcccCCcee--ecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc
Q 016328 237 PEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 314 (391)
Q Consensus 237 ~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 314 (391)
.+.++|+. +.+.|......+-...++-|-|-||.+.- .+|.-+
T Consensus 242 --------------~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv---------------------tlwke~ 286 (299)
T KOG1332|consen 242 --------------EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV---------------------TLWKEN 286 (299)
T ss_pred --------------CccCcccccccccCCcceEEEEEeccccEEEEecCCcEE---------------------EEEEeC
Confidence 22345543 34556555544555556666666665421 245544
Q ss_pred CcCcEEEcCC
Q 016328 315 DEMKWKVLPS 324 (391)
Q Consensus 315 ~~~~W~~v~~ 324 (391)
...+|.++..
T Consensus 287 ~~Gkw~~v~~ 296 (299)
T KOG1332|consen 287 VDGKWEEVGE 296 (299)
T ss_pred CCCcEEEccc
Confidence 5678998864
No 100
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=82.60 E-value=42 Score=31.36 Aligned_cols=150 Identities=14% Similarity=0.191 Sum_probs=78.4
Q ss_pred EEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCC--CCceEEEECCEEEEEccCCCCccCCCccc
Q 016328 165 LGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR--YAPATQLWRGRLHVMGGSGENRYTPEVDH 241 (391)
Q Consensus 165 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 241 (391)
++++.. ++.+.+.||.+ +..+.++..+..|-- .++--. -..+...+++.+.+.|+.++. +.+
T Consensus 68 Favsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v 132 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLV 132 (399)
T ss_pred EEEEeCCCCceEEecCCC--------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCcc-----EEE
Confidence 455554 77888898863 445778888877432 222211 222334678889999988653 333
Q ss_pred eEeeeecCCcccCCceeecCCCCCCcceeEEE-E-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCc
Q 016328 242 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV-V-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK 318 (391)
Q Consensus 242 ~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~-~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~ 318 (391)
|.. .....+|....++..- .... + ...|+++|-.++. +|.|. ++..
T Consensus 133 ~~~-----stg~~~~~~~~e~~di----eWl~WHp~a~illAG~~DGs----------------------vWmw~ip~~~ 181 (399)
T KOG0296|consen 133 FKV-----STGGEQWKLDQEVEDI----EWLKWHPRAHILLAGSTDGS----------------------VWMWQIPSQA 181 (399)
T ss_pred EEc-----ccCceEEEeecccCce----EEEEecccccEEEeecCCCc----------------------EEEEECCCcc
Confidence 433 2445555543222100 0000 0 2356777765443 78877 5432
Q ss_pred EEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328 319 WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374 (391)
Q Consensus 319 W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~ 374 (391)
-.+ -|+-+.....++-...+|+..+.|=.++ .+..+++++.+
T Consensus 182 ~~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~dg------------ti~~Wn~ktg~ 223 (399)
T KOG0296|consen 182 LCK--VMSGHNSPCTCGEFIPDGKRILTGYDDG------------TIIVWNPKTGQ 223 (399)
T ss_pred eee--EecCCCCCcccccccCCCceEEEEecCc------------eEEEEecCCCc
Confidence 222 2333333333444566677666554432 46667776665
No 101
>smart00284 OLF Olfactomedin-like domains.
Probab=82.18 E-value=37 Score=30.41 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=87.1
Q ss_pred ceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCC-----C-----CcceEEEEEe
Q 016328 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE-----M-----AHSHLGMVTD 170 (391)
Q Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----~-----~r~~~~~~~~ 170 (391)
++.+.-.+|.+-.+-+.++.++.+|.--.. ...+.+||+.+++-.....+|.. . +-...-.++.
T Consensus 63 ~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 63 KNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD 136 (255)
T ss_pred CCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc
Confidence 343333466666777788899999984322 34599999999986544444431 0 1122455666
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCC----ceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeee
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK----KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV 246 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 246 (391)
++=|+|+=....... .-.+-+.||.+- +|.. ..+.+. ...+.++.|.||++-... .... ...
T Consensus 137 E~GLWvIYat~~~~g---~ivvSkLnp~tL~ve~tW~T--~~~k~s-a~naFmvCGvLY~~~s~~----~~~~----~I~ 202 (255)
T smart00284 137 ENGLWVIYATEQNAG---KIVISKLNPATLTIENTWIT--TYNKRS-ASNAFMICGILYVTRSLG----SKGE----KVF 202 (255)
T ss_pred CCceEEEEeccCCCC---CEEEEeeCcccceEEEEEEc--CCCccc-ccccEEEeeEEEEEccCC----CCCc----EEE
Confidence 666777622211110 233457787764 4654 333333 335667888999995311 1111 123
Q ss_pred ecCCcccCCceee-cCCCCCCcceeEEEE---CCEEEEEe
Q 016328 247 KDGKPLEKEWRTE-IPIPRGGPHRACVVV---DDRLLVIG 282 (391)
Q Consensus 247 ~~~d~~~~~W~~~-~~~p~~~~~~~~~~~---~~~i~v~G 282 (391)
+.||+.+++=..+ .+++.....+++.-. +.+||+.-
T Consensus 203 yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 203 YAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred EEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 4455655542222 344444434455443 56777763
No 102
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=81.75 E-value=32 Score=29.34 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=28.6
Q ss_pred EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eEECCC-CC-CCCCCceEEEE--CCEEEEEccC
Q 016328 166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPP-LP-VPRYAPATQLW--RGRLHVMGGS 230 (391)
Q Consensus 166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~-~~r~~~~~~~~--~~~iyv~GG~ 230 (391)
++....+++|+|-| ..+|+++..... -..+.. .| .+..--++... ++++|+|=|.
T Consensus 11 A~~~~~g~~y~FkG----------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~ 71 (194)
T cd00094 11 AVTTLRGELYFFKG----------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD 71 (194)
T ss_pred eEEEeCCEEEEEeC----------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC
Confidence 34445699999965 456777765221 112211 11 12222334433 3789999764
No 103
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.99 E-value=53 Score=30.82 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=76.7
Q ss_pred ceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCC--CCCCC-CcceEEEEEeCCEEEEEeCccCCCCCC
Q 016328 115 GAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFD--MPREM-AHSHLGMVTDGRYIYVVTGQYGPQCRG 187 (391)
Q Consensus 115 ~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~p~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (391)
|.+... ++.+||.- . -.+.+++|+.+.+. .+.... +|... || +......+..+||..-.
T Consensus 147 H~v~~~pdg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~------- 212 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNEL------- 212 (345)
T ss_dssp EEEEE-TTSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETT-------
T ss_pred eeEEECCCCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCC-------
Confidence 444444 34777753 1 14568888887766 544222 22211 22 22222335689998643
Q ss_pred CcceeE--EEeCCCCceEECC---CCCCC---C-CCceEEEE--CCEEEEEccCCCCccCCCccceEeeeecCCcccCCc
Q 016328 188 PTAHTF--VLDTETKKWQDLP---PLPVP---R-YAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW 256 (391)
Q Consensus 188 ~~~~~~--~yd~~~~~W~~~~---~~~~~---r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W 256 (391)
.+.+. .|+..+.+++.+. .+|.. . ..+.+++. +..||+.--. .+.+-.|++ |+++.+.
T Consensus 213 -s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~-----d~~~g~l 281 (345)
T PF10282_consen 213 -SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDL-----DPATGTL 281 (345)
T ss_dssp -TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEE-----CTTTTTE
T ss_pred -CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEE-----ecCCCce
Confidence 34444 4554466666553 34322 1 22223333 4457776422 223334443 4555565
Q ss_pred eeecCCCCCCcceeEEEE--CCE-EEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcC
Q 016328 257 RTEIPIPRGGPHRACVVV--DDR-LLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP 323 (391)
Q Consensus 257 ~~~~~~p~~~~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~ 323 (391)
+.+...+..+...-...+ +++ ||+.+ ...+ .-.++..| .+..++.+.
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~-------------------~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVAN-QDSN-------------------TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEE-TTTT-------------------EEEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEe-cCCC-------------------eEEEEEEeCCCCcEEEec
Confidence 555444332221222222 444 55544 3322 11355556 678888775
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=79.94 E-value=24 Score=27.76 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred EECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCC-CCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEE-e
Q 016328 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL-D 196 (391)
Q Consensus 119 ~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y-d 196 (391)
.++|-+|-..-. .......+-.||..+++|+.+... ...........+.++|+|-++.-..... ...-++|.+ |
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 457777776655 122235699999999999886432 1112345567888899988875433221 113567777 5
Q ss_pred CCCCceEECC
Q 016328 197 TETKKWQDLP 206 (391)
Q Consensus 197 ~~~~~W~~~~ 206 (391)
.++.+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6677898764
No 105
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=79.65 E-value=45 Score=31.81 Aligned_cols=284 Identities=15% Similarity=0.119 Sum_probs=125.5
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCCceeeEeecC-cccccccccccccccccccCceE-Ec--c
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWE-KM--K 106 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~-~~--~ 106 (391)
+.++|+.+ .++ .+..+|+.+.+ ..++. .....+.++...+ +.....+.++.+..+|..+.+=. .+ .
T Consensus 48 gr~~yv~~-rdg-----~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 48 GRYLYVAN-RDG-----TVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp SSEEEEEE-TTS-----EEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred CCEEEEEc-CCC-----eEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 46788886 343 68899999988 34433 1223455555444 55555566667888887765321 11 1
Q ss_pred CCC----CCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCcc
Q 016328 107 AAP----VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQY 181 (391)
Q Consensus 107 ~~p----~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~ 181 (391)
.++ .+|...-.....+..||+--.+ ...++..|.....=.....++. .+..|..... +++.|+.+ ..
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdgry~~va-~~ 191 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDGRYFLVA-AN 191 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEE-EG
T ss_pred cccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeeecc--cccccccccCcccceeeec-cc
Confidence 122 2232222223355556665433 3458888866542111112222 4445554444 33333332 22
Q ss_pred CCCCCCCcceeEEEeCCCCceEEC---CCCCCCCCCceEEEEC-CEEEEEccCCCCc---c-CCCccceEeeeecCCccc
Q 016328 182 GPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWR-GRLHVMGGSGENR---Y-TPEVDHWSLAVKDGKPLE 253 (391)
Q Consensus 182 ~~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~---~-~~~~~~~~~~~~~~d~~~ 253 (391)
+ .+.+-..|.++.+-..+ ...|.+.......... +-++..+|..... . ......+ ..
T Consensus 192 ~------sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~---------d~ 256 (369)
T PF02239_consen 192 G------SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH---------DD 256 (369)
T ss_dssp G------GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S---------TT
T ss_pred c------cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc---------hh
Confidence 1 46778889887754322 1222222222222222 2344444432211 0 0111112 24
Q ss_pred CCceeecCCCCCCcceeEEEECC--EEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCC-CC
Q 016328 254 KEWRTEIPIPRGGPHRACVVVDD--RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PD 329 (391)
Q Consensus 254 ~~W~~~~~~p~~~~~~~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~-~~ 329 (391)
..|+.+..++..+.++....+-+ .+|+-- ..+. -.+.|..+| .+. +.+..+.. +.
T Consensus 257 ~~wkvv~~I~~~G~glFi~thP~s~~vwvd~-~~~~------------------~~~~v~viD~~tl--~~~~~i~~~~~ 315 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGGLFIKTHPDSRYVWVDT-FLNP------------------DADTVQVIDKKTL--KVVKTITPGPG 315 (369)
T ss_dssp TBTSEEEEEE-SSSS--EE--TT-SEEEEE--TT-S------------------SHT-EEEEECCGT--EEEE-HHHHHT
T ss_pred hcCeEEEEEECCCCcceeecCCCCccEEeec-cCCC------------------CCceEEEEECcCc--ceeEEEeccCC
Confidence 67888776665554445555543 344420 1111 034588887 555 44434321 11
Q ss_pred CCceeeEEEECC-EEEEEccccCCCCcccceeEecceEEEecCccc-cccCC
Q 016328 330 SHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV-SAFYP 379 (391)
Q Consensus 330 ~~~~~~~~~~~~-~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~lp 379 (391)
.+.-|.-..-+| ++|+- -++..+ .+..||.++++ ...+|
T Consensus 316 ~~~~h~ef~~dG~~v~vS-~~~~~~----------~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVS-VWDGNG----------AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --EEEEEE-TTSSEEEEE-EE--TT----------EEEEEETTTTEEEEEEE
T ss_pred CcEeccEECCCCCEEEEE-EecCCC----------EEEEEECCCcEEEEEEE
Confidence 122232233344 55553 333322 69999999998 44444
No 106
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.17 E-value=64 Score=30.71 Aligned_cols=103 Identities=7% Similarity=0.011 Sum_probs=59.4
Q ss_pred CCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC-----CCCCC--CCceEEE
Q 016328 147 DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP-----LPVPR--YAPATQL 219 (391)
Q Consensus 147 ~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~r--~~~~~~~ 219 (391)
.+.|+.+..+.. ..-.++.++|++|++.- .-.++.+|.+- +=+++++ +...+ ...-.+.
T Consensus 189 ~~~Wt~l~~~~~----~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMGY----HFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCCc----eeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEE
Confidence 489999864322 34578899999999821 23455666321 1122221 11111 2234567
Q ss_pred ECCEEEEEccCCCCccC-------CCccceEeeeecCCcccCCceeecCCC
Q 016328 220 WRGRLHVMGGSGENRYT-------PEVDHWSLAVKDGKPLEKEWRTEIPIP 263 (391)
Q Consensus 220 ~~~~iyv~GG~~~~~~~-------~~~~~~~~~~~~~d~~~~~W~~~~~~p 263 (391)
..|+|+++......... .......+.+|..|.+..+|.++..+.
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 78899999864211100 012235567888888889999877663
No 107
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=78.05 E-value=36 Score=30.56 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCEEEEEe--ccCCCC-CCcceeEEEECC-CCCeeeCCCCCCC----C--CcceEEEEEeCCEEEEEeCccCCCCCCCcc
Q 016328 121 KNLLYVFA--GYGSID-YVHSHVDIYNFT-DNTWGGRFDMPRE----M--AHSHLGMVTDGRYIYVVTGQYGPQCRGPTA 190 (391)
Q Consensus 121 ~~~vyv~G--G~~~~~-~~~~~~~~yd~~-~~~W~~~~~~p~~----~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 190 (391)
+++|+++. +..... ....-.+....+ ..+|+....++.. . .-....+..-++.+++.. +.... ....
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~--~~~~ 134 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESG--GSFS 134 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESS--CEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccc--cCcc
Confidence 77888886 222221 111111355555 4589986543321 0 111222455688888872 11111 0123
Q ss_pred eeEEEe-CCCCceEECCCCCCC-CCCc-eEEE-ECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec--CCCC
Q 016328 191 HTFVLD-TETKKWQDLPPLPVP-RYAP-ATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI--PIPR 264 (391)
Q Consensus 191 ~~~~yd-~~~~~W~~~~~~~~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~ 264 (391)
....|. -.-.+|+.....+.. .... +.+. -+++|+++--.... ...+ .... .....+|+... .+|.
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~-----~~~~--~~~S-~D~G~TWs~~~~~~~~~ 206 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGN-----DDIY--ISRS-TDGGRTWSPPQPTNLPN 206 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSS-----TEEE--EEEE-SSTTSS-EEEEEEECSS
T ss_pred eEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCC-----CcEE--EEEE-CCCCCcCCCceecccCc
Confidence 334444 445679988765422 3332 3332 36788887532110 0111 1111 24577898754 3454
Q ss_pred CCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEE-cCcCcEEEcCCCCCCC---CCceeeEEEE
Q 016328 265 GGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DDEMKWKVLPSMPKPD---SHIEFAWVLV 339 (391)
Q Consensus 265 ~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~W~~v~~~~~~~---~~~~~~~~~~ 339 (391)
.......+.+ +++++++....... ..-.++.- |...+|+....+.... ......+..-
T Consensus 207 ~~~~~~~~~~~~g~~~~~~~~~~~r-----------------~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~ 269 (275)
T PF13088_consen 207 PNSSISLVRLSDGRLLLVYNNPDGR-----------------SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLP 269 (275)
T ss_dssp CCEEEEEEECTTSEEEEEEECSSTS-----------------EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEE
T ss_pred ccCCceEEEcCCCCEEEEEECCCCC-----------------CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeC
Confidence 4433343443 56888777631111 01113322 3678998765543322 2333333445
Q ss_pred CCEEEE
Q 016328 340 NNSIVI 345 (391)
Q Consensus 340 ~~~l~i 345 (391)
+++|+|
T Consensus 270 dg~l~i 275 (275)
T PF13088_consen 270 DGKLYI 275 (275)
T ss_dssp TTEEEE
T ss_pred CCcCCC
Confidence 679886
No 108
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=77.96 E-value=45 Score=28.83 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
++..+++++.+ ..+.+||..+++-... +... ...-.++... ++.+++.++. ...+..||+.+
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRT--LTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEE--Eecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCC
Confidence 33456666642 3588888877532221 1111 1112233333 3466666652 24577888875
Q ss_pred Cc
Q 016328 200 KK 201 (391)
Q Consensus 200 ~~ 201 (391)
.+
T Consensus 125 ~~ 126 (289)
T cd00200 125 GK 126 (289)
T ss_pred cE
Confidence 43
No 109
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=77.46 E-value=51 Score=29.20 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=77.6
Q ss_pred CceEEccCCCC-----CccCceE-EEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--C
Q 016328 100 LKWEKMKAAPV-----PRLDGAA-IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--G 171 (391)
Q Consensus 100 ~~W~~~~~~p~-----~r~~~~~-~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~ 171 (391)
.-|+...|+.. |-..... .--.+.|+.+||. ..++..|.++.+-+..-.-. .-+-|+++.- +
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccC
Confidence 35776666532 3222222 2235788888873 34888999999887742211 2345666653 2
Q ss_pred CEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC-C-----CCCCCCCCc--eEEEECCEEEEEccCCCCccCCCccceE
Q 016328 172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL-P-----PLPVPRYAP--ATQLWRGRLHVMGGSGENRYTPEVDHWS 243 (391)
Q Consensus 172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~-~-----~~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 243 (391)
++| +.|+.++ .+-.+|.+|.+=..+ . .+..|..+. .+...+....|.||. +....|.
T Consensus 169 ~qi-lsG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwh 233 (325)
T KOG0649|consen 169 GQI-LSGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWH 233 (325)
T ss_pred cce-eecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEe
Confidence 333 3566554 345678777664332 2 222332333 444556666777764 3355565
Q ss_pred eeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCC
Q 016328 244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 284 (391)
Q Consensus 244 ~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~ 284 (391)
+ ...+=+.+-|.|... --+.+.+..+++||.
T Consensus 234 L-------rsse~t~vfpipa~v---~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 234 L-------RSSESTCVFPIPARV---HLVDFVDDCVLIGGE 264 (325)
T ss_pred c-------cCCCceEEEecccce---eEeeeecceEEEecc
Confidence 3 223333344444333 334555555555664
No 110
>PRK00178 tolB translocation protein TolB; Provisional
Probab=77.07 E-value=74 Score=30.82 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=56.3
Q ss_pred cccccccccCceEEccCCCCCccCceEEE-EC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEE
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQ-IK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~ 168 (391)
.++.+|..+.+-+.+...+.. ..+... -+ ++|++..-.++ ..+++++|..+++.+.+...+. .-......
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~s 295 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPA--IDTEPFWG 295 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCC--CcCCeEEC
Confidence 577778877776666543321 111221 13 35554332221 1469999999998887754332 11122222
Q ss_pred EeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (391)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (391)
..+.+|+......+ ...++.+|..+.+++.+.
T Consensus 296 pDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 296 KDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 23445665532221 357899999988887765
No 111
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.05 E-value=66 Score=29.73 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=69.6
Q ss_pred ccCceEEccCCCCCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCC-CCCCCCcceEEEEEeCCEEE
Q 016328 98 PELKWEKMKAAPVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD-MPREMAHSHLGMVTDGRYIY 175 (391)
Q Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~~~r~~~~~~~~~~~iy 175 (391)
..+.|+.+. +|.......+...+ +.-|++|-. ..+.+=+-.-.+|+.... .+.+......++...++..|
T Consensus 4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEE
T ss_pred cCCCcEEee-cCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceE
Confidence 346898876 44444555565554 588888742 123333333468998652 22221122335566788999
Q ss_pred EEeCccCCCCCCCcceeEEEeCCCCceEECC-CCCCCCCCceEE-EECCEEEEEccCCCCccCCCccceEeeeecCCccc
Q 016328 176 VVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE 253 (391)
Q Consensus 176 v~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~ 253 (391)
|+|- ..-+++-.-.-.+|+.++ +.+.|-..+.+. .-++.++++|... ..|.- ....
T Consensus 76 ivG~---------~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T-----~DgG 133 (302)
T PF14870_consen 76 IVGE---------PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRT-----TDGG 133 (302)
T ss_dssp EEEE---------TTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEE-----SSTT
T ss_pred EEcC---------CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEe-----CCCC
Confidence 9873 233555555678999986 333443334444 3456677765321 22221 2457
Q ss_pred CCceeecCCCCCCcceeEEE-ECCEEEEEeC
Q 016328 254 KEWRTEIPIPRGGPHRACVV-VDDRLLVIGG 283 (391)
Q Consensus 254 ~~W~~~~~~p~~~~~~~~~~-~~~~i~v~GG 283 (391)
.+|+.+..-..+... .... -++++++++.
T Consensus 134 ~tW~~~~~~~~gs~~-~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 134 KTWQAVVSETSGSIN-DITRSSDGRYVAVSS 163 (302)
T ss_dssp SSEEEEE-S----EE-EEEE-TTS-EEEEET
T ss_pred CCeeEcccCCcceeE-eEEECCCCcEEEEEC
Confidence 788876544333322 2333 3556555553
No 112
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.04 E-value=52 Score=33.08 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=55.4
Q ss_pred eEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCC-C-----cceEEEEEeCCEEEEEeCccCCCCCC
Q 016328 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM-A-----HSHLGMVTDGRYIYVVTGQYGPQCRG 187 (391)
Q Consensus 116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~-~-----r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (391)
+-++.++.||+.... ..+..+|..+. .|+.-...+... + ....+.++.+++||+...
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 345678999996542 24889998876 488643332110 0 112235677888887421
Q ss_pred CcceeEEEeCCCCc--eEECC-CCCCC-CCCceEEEECCEEEEE
Q 016328 188 PTAHTFVLDTETKK--WQDLP-PLPVP-RYAPATQLWRGRLHVM 227 (391)
Q Consensus 188 ~~~~~~~yd~~~~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~ 227 (391)
...+.++|.+|.+ |+.-. ..... ....+-++.+++||+-
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred -CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 3468899998765 87532 22211 1223344678887764
No 113
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=74.76 E-value=72 Score=29.59 Aligned_cols=186 Identities=17% Similarity=0.291 Sum_probs=86.0
Q ss_pred ceEEEECCEEEEEeccC----CCCCCcceeEEEE-CCCCCeeeCCC-C--CCC---CCcceEEEEEeCCEEEEEeCccCC
Q 016328 115 GAAIQIKNLLYVFAGYG----SIDYVHSHVDIYN-FTDNTWGGRFD-M--PRE---MAHSHLGMVTDGRYIYVVTGQYGP 183 (391)
Q Consensus 115 ~~~~~~~~~vyv~GG~~----~~~~~~~~~~~yd-~~~~~W~~~~~-~--p~~---~~r~~~~~~~~~~~iyv~GG~~~~ 183 (391)
++++.+++.|+++.... .......-+..|. ....+|+.... + ... ......+.++-++.||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46788899999887642 1122223233343 45568987321 1 111 112346777889999998665443
Q ss_pred CCCCCcceeEEEe--CCCCceEECCCCCCCCCCceEEEECCEEEEEccCCC-----Cc-------cCCCcc-ceEeeeec
Q 016328 184 QCRGPTAHTFVLD--TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE-----NR-------YTPEVD-HWSLAVKD 248 (391)
Q Consensus 184 ~~~~~~~~~~~yd--~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-----~~-------~~~~~~-~~~~~~~~ 248 (391)
......-.+..+. ....+|.....++..-..+ .+.++-||.++ .. .....+ .+.+.+|.
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEE
Confidence 2111133344442 2334698876655322210 01244343221 10 111223 46666665
Q ss_pred CCcccCCceeecCCC-CCCcceeEEEE-CCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEE-cCC
Q 016328 249 GKPLEKEWRTEIPIP-RGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV-LPS 324 (391)
Q Consensus 249 ~d~~~~~W~~~~~~p-~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~-v~~ 324 (391)
- .....|.....++ .+...++.+.. +++|+++.-++.. ...||.=. ...+|++ +.+
T Consensus 156 ~-d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g-------------------~rrVYeS~DmG~tWtea~gt 215 (310)
T PF13859_consen 156 T-DDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG-------------------RRRVYESGDMGTTWTEALGT 215 (310)
T ss_dssp S-STTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----------------------EEEESSTTSS-EE-TTT
T ss_pred C-CCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc-------------------eEEEEEEcccceehhhccCc
Confidence 3 3478899765554 45555667777 7899998665432 12366654 6789999 445
Q ss_pred CC
Q 016328 325 MP 326 (391)
Q Consensus 325 ~~ 326 (391)
++
T Consensus 216 ls 217 (310)
T PF13859_consen 216 LS 217 (310)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 114
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=73.19 E-value=69 Score=28.67 Aligned_cols=213 Identities=13% Similarity=0.125 Sum_probs=91.8
Q ss_pred EEEECCEEEE--EeccC-CCCCCcceeEEEECC-CCCeee---CCCCCC--C-CCcceEEEEEeCCEEEEEeCccCCCCC
Q 016328 117 AIQIKNLLYV--FAGYG-SIDYVHSHVDIYNFT-DNTWGG---RFDMPR--E-MAHSHLGMVTDGRYIYVVTGQYGPQCR 186 (391)
Q Consensus 117 ~~~~~~~vyv--~GG~~-~~~~~~~~~~~yd~~-~~~W~~---~~~~p~--~-~~r~~~~~~~~~~~iyv~GG~~~~~~~ 186 (391)
+.+.++-||. ++|.. +-+. +.-.|+=..+ .++|+. +.++.. | ..-.++++.+++++||.+=-...-. .
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~-LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a-~ 98 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDN-LHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA-S 98 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT--EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT-T
T ss_pred ceeecCeeecccccccccCccc-eEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh-h
Confidence 4566777776 34432 2222 3334444443 467876 333322 1 1122457888999999874321111 0
Q ss_pred CCcceeEEEe---CCCCceEEC--CCCCC-------CCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccC
Q 016328 187 GPTAHTFVLD---TETKKWQDL--PPLPV-------PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (391)
Q Consensus 187 ~~~~~~~~yd---~~~~~W~~~--~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 254 (391)
..+...+.|| ...+.|+.. +..+. ....|+.+.+++.-|.+|=..++........+-. -..|+....
T Consensus 99 ~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf-s~~~~sp~~ 177 (367)
T PF12217_consen 99 NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF-SDAFASPGV 177 (367)
T ss_dssp --EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE-TTTTT-TT-
T ss_pred hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe-cccccCCcc
Confidence 1145556666 567889754 33333 3456788888888888875443321111111110 000111111
Q ss_pred Cce-ee-cCCCCCCcceeEEEECCEEEEEe-CCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCC
Q 016328 255 EWR-TE-IPIPRGGPHRACVVVDDRLLVIG-GQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDS 330 (391)
Q Consensus 255 ~W~-~~-~~~p~~~~~~~~~~~~~~i~v~G-G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~ 330 (391)
.-+ .+ ..+.+.-.-.+.-..++.||+.- |..... +-..+.+-+ ....|+.+. .|....
T Consensus 178 ~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~-----------------~GS~L~rs~d~G~~w~slr-fp~nvH 239 (367)
T PF12217_consen 178 FVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN-----------------PGSSLHRSDDNGQNWSSLR-FPNNVH 239 (367)
T ss_dssp -EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS--------------------EEEEESSTTSS-EEEE--TT---
T ss_pred eeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC-----------------CcceeeeecccCCchhhcc-cccccc
Confidence 111 12 22333333345557899999974 332211 112255555 677898873 333222
Q ss_pred CceeeEEEECCEEEEEcccc
Q 016328 331 HIEFAWVLVNNSIVIVGGTT 350 (391)
Q Consensus 331 ~~~~~~~~~~~~l~i~GG~~ 350 (391)
+...-.+.+++.||+||-..
T Consensus 240 htnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 240 HTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp SS---EEEETTEEEEEEE-S
T ss_pred ccCCCceeeCCEEEEEeccc
Confidence 22233478999999997643
No 115
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.46 E-value=1.4e+02 Score=31.79 Aligned_cols=62 Identities=5% Similarity=0.064 Sum_probs=32.9
Q ss_pred CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
+..++.|+.+ ..+.+||..+++-.. .+... ...-.+++.. ++.+++.||.++ .+..||..+
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~--~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVT--EMKEH-EKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQ 607 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEE--EecCC-CCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCC
Confidence 3455555543 347788887654322 22111 1122334442 567888887643 466788765
Q ss_pred C
Q 016328 200 K 200 (391)
Q Consensus 200 ~ 200 (391)
.
T Consensus 608 ~ 608 (793)
T PLN00181 608 G 608 (793)
T ss_pred C
Confidence 4
No 116
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=71.57 E-value=1.2e+02 Score=30.60 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=43.7
Q ss_pred EEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCC-CCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeE
Q 016328 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRF-DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF 193 (391)
Q Consensus 117 ~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~-~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 193 (391)
.++.+++||+... ...+.++|.++.+ |+.-. .+... .....+-++.+++||+-....... ....+.
T Consensus 116 ~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~---~~G~v~ 184 (527)
T TIGR03075 116 VALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFG---VRGYVT 184 (527)
T ss_pred ceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccC---CCcEEE
Confidence 4566788887432 2358999998875 87632 22211 111234456788887743211111 135688
Q ss_pred EEeCCCCc--eEE
Q 016328 194 VLDTETKK--WQD 204 (391)
Q Consensus 194 ~yd~~~~~--W~~ 204 (391)
.||.++.+ |+.
T Consensus 185 AlD~~TG~~lW~~ 197 (527)
T TIGR03075 185 AYDAKTGKLVWRR 197 (527)
T ss_pred EEECCCCceeEec
Confidence 89988764 764
No 117
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.50 E-value=1e+02 Score=29.80 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=47.7
Q ss_pred ccCceEEccC-C--CCCc--cCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCC
Q 016328 98 PELKWEKMKA-A--PVPR--LDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR 172 (391)
Q Consensus 98 ~~~~W~~~~~-~--p~~r--~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~ 172 (391)
...+|++... . ...+ ...++...++..|++|-. ..+..=+-.-++|+.++..+..........++-++
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~ 190 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPK 190 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCceEEEEECCC
Confidence 4458988631 1 1112 234455567788888632 11222233457899875432110122223333345
Q ss_pred EEEEEeCccCCCCCCCcceeEEEeCCCCceEEC
Q 016328 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205 (391)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~ 205 (391)
.++++|. ...+++-+-.-.+|+.+
T Consensus 191 ~~~ivg~---------~G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 191 SAEMVTD---------EGAIYVTSNAGRNWKAA 214 (398)
T ss_pred ceEEEec---------cceEEEECCCCCCceEc
Confidence 6777763 23356666667799987
No 118
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.63 E-value=84 Score=28.54 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=83.9
Q ss_pred eEeeecCCCCe---eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEccCCCCCccCceEEEECCEEEE
Q 016328 50 IASNWSPYHNS---IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYV 126 (391)
Q Consensus 50 ~~~~~d~~~~~---~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv 126 (391)
-+-++||++.. .++|...+.......++......--.......-++||.++.-+..+...-.-.+..++.-++.||+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwy 204 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWY 204 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEE
Confidence 46678887765 455543322222222222210000000011222556665543322221111222333445778887
Q ss_pred EeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceE---EEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceE
Q 016328 127 FAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHL---GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ 203 (391)
Q Consensus 127 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~ 203 (391)
..=. -+.+-..|+.+..=+.++ .|. +...- .-+---+++++. . .....+++|||.+..|.
T Consensus 205 asla------gnaiaridp~~~~aev~p-~P~--~~~~gsRriwsdpig~~wit----t----wg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 205 ASLA------GNAIARIDPFAGHAEVVP-QPN--ALKAGSRRIWSDPIGRAWIT----T----WGTGSLHRFDPSVTSWI 267 (353)
T ss_pred Eecc------ccceEEcccccCCcceec-CCC--cccccccccccCccCcEEEe----c----cCCceeeEeCcccccce
Confidence 6311 133566677665333322 111 11110 111223567765 1 11467899999999999
Q ss_pred ECC-CCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeec
Q 016328 204 DLP-PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI 260 (391)
Q Consensus 204 ~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 260 (391)
+.+ +-..+|....-+--.++++.---- ... +..|||++.+++.++
T Consensus 268 eypLPgs~arpys~rVD~~grVW~sea~-----aga-------i~rfdpeta~ftv~p 313 (353)
T COG4257 268 EYPLPGSKARPYSMRVDRHGRVWLSEAD-----AGA-------IGRFDPETARFTVLP 313 (353)
T ss_pred eeeCCCCCCCcceeeeccCCcEEeeccc-----cCc-------eeecCcccceEEEec
Confidence 876 333555554444445566653100 111 234468888887653
No 119
>PRK05137 tolB translocation protein TolB; Provisional
Probab=68.91 E-value=1.2e+02 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.9
Q ss_pred cceeEEEeCCCCceEECCCCCC
Q 016328 189 TAHTFVLDTETKKWQDLPPLPV 210 (391)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~~~~~ 210 (391)
...++.+|+.+.+.+.+...+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC
Confidence 3689999999988887765443
No 120
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.44 E-value=1.1e+02 Score=28.82 Aligned_cols=232 Identities=15% Similarity=0.184 Sum_probs=103.7
Q ss_pred ccccccccc--CceEEccCCCCCccCceEEEE---CCEEEEEeccCCCCCCcceeEEEECCCCC-eeeC---------CC
Q 016328 91 TFQDLPAPE--LKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGR---------FD 155 (391)
Q Consensus 91 ~~~~~d~~~--~~W~~~~~~p~~r~~~~~~~~---~~~vyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~---------~~ 155 (391)
.+..|.... .+.+.+...+......+...+ +..||+.- +. ..++.+|++..+. -... .+
T Consensus 63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCC
Confidence 344444443 567777665533333333333 44677753 21 2457777776642 1111 11
Q ss_pred CC-CCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eEECCC--CCCCC-CCceEEEE-CCEEEE
Q 016328 156 MP-REMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPP--LPVPR-YAPATQLW-RGRLHV 226 (391)
Q Consensus 156 ~p-~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~--~~~~r-~~~~~~~~-~~~iyv 226 (391)
-+ .......|.+... ++.+|+..= + .+.++.|+..... .+.... ++..- -.|.+..- +..+||
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~dl--G------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPDL--G------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEET--T------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred cccccccccceeEEECCCCCEEEEEec--C------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence 11 1111223444444 357887631 1 5678888877665 655332 22211 11233332 346899
Q ss_pred EccCCCCccCCCccceEeeeecCCcccCCceee---cCCCCC---C-cceeEEEE--CCEEEEEeCCCCCCCcCCCCCcc
Q 016328 227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE---IPIPRG---G-PHRACVVV--DDRLLVIGGQEGDFMAKPGSPIF 297 (391)
Q Consensus 227 ~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~---~-~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~ 297 (391)
+.-.+ ..+..|+ +++.+..++.+ +.+|.. . .....+.. +..||+......
T Consensus 209 ~~e~s-----~~v~v~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~----------- 267 (345)
T PF10282_consen 209 VNELS-----NTVSVFD-----YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN----------- 267 (345)
T ss_dssp EETTT-----TEEEEEE-----EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-----------
T ss_pred ecCCC-----CcEEEEe-----ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-----------
Confidence 86543 2333343 33445555443 334322 1 22233333 345777543211
Q ss_pred ccCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccc
Q 016328 298 KCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVS 375 (391)
Q Consensus 298 ~~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~ 375 (391)
.-.+|..| .+.+.+.+...+..-....+-.+..+++.++++...... ..+|..|.++..+
T Consensus 268 ---------sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~---------v~vf~~d~~tG~l 328 (345)
T PF10282_consen 268 ---------SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT---------VSVFDIDPDTGKL 328 (345)
T ss_dssp ---------EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE---------EEEEEEETTTTEE
T ss_pred ---------EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe---------EEEEEEeCCCCcE
Confidence 11255555 556666665544321112222233466666666654331 2566666655443
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=67.73 E-value=1.2e+02 Score=29.09 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=62.9
Q ss_pred cccccccccCceEEccCCCCCccCceEEEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~ 169 (391)
.++.+|..+.+-..+...+......+ ..-+ ..|++....++ ...++.+|+.++..+.+...+. .........
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~s~ 287 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG--IDTEPSWSP 287 (417)
T ss_pred EEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC--CCCCEEECC
Confidence 56777777665555544332222211 1123 35655543222 2358999999888777654332 111112222
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCce-EEEECCEEEEEccC
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA-TQLWRGRLHVMGGS 230 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~ 230 (391)
.+.+|++.....+ ...++.+|..+..++.+..-. ..... ...-+++.+++...
T Consensus 288 dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 288 DGKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEc
Confidence 3345554433221 357899999988887665321 11122 22335565556543
No 122
>PRK02889 tolB translocation protein TolB; Provisional
Probab=66.66 E-value=1.3e+02 Score=29.22 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=35.4
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|+.+.+=+.+...+. ........-.+.+|++....++ ..+++.+|..+...+.+..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 358999998876555544432 1111222223445655443322 4678999998777666643
No 123
>PTZ00421 coronin; Provisional
Probab=66.03 E-value=1.5e+02 Score=29.62 Aligned_cols=101 Identities=8% Similarity=-0.014 Sum_probs=47.9
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCee-----eCCCCCCCCCcceEEEEEe--CCEEEEEeCccCCCCCCCcceeE
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG-----GRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTF 193 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~-----~~~~~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 193 (391)
++.+++.|+.++ .+.+||..++... .+..+... ...-..++.. ++.+++.||.+ ..+.
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~D--------gtVr 151 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGAD--------MVVN 151 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCC--------CEEE
Confidence 456777776642 4777887654321 11112211 1111222332 34577777753 3567
Q ss_pred EEeCCCCceEECCCCCC-CCCCceEE-EECCEEEEEccCCCCccCCCccceE
Q 016328 194 VLDTETKKWQDLPPLPV-PRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWS 243 (391)
Q Consensus 194 ~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 243 (391)
.||..+.+-. ..+.. ...-.++. .-++.+++.|+.+. .+..|+
T Consensus 152 IWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD 196 (493)
T PTZ00421 152 VWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIID 196 (493)
T ss_pred EEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEE
Confidence 8888765421 11111 11111222 23677777777543 355665
No 124
>PRK03629 tolB translocation protein TolB; Provisional
Probab=63.23 E-value=1.5e+02 Score=28.80 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=38.2
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (391)
..++++|+.+++-+.+...+. .-........+.+|++.....+ ..+++.+|.++.+.+.+..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~--~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC--CcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 458899998887777665544 1122222233445665533222 35699999999887776543
No 125
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.85 E-value=1.5e+02 Score=28.15 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=59.4
Q ss_pred ccccccccccCceEEccCCCCCccCceEEE-ECCEEEEEeccC---CCCCCcceeEEEECCCCCeeeCCCCC-CCC----
Q 016328 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQ-IKNLLYVFAGYG---SIDYVHSHVDIYNFTDNTWGGRFDMP-REM---- 160 (391)
Q Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~vyv~GG~~---~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~---- 160 (391)
+.+..+|..+ ++.+..++.....+.+.. -+..+||.-.+- ..+...+.+.+||+.+.+=..--++| .|+
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 4677887766 445555554433333322 255899987731 12223567999999987755421222 111
Q ss_pred -CcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceE
Q 016328 161 -AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ 203 (391)
Q Consensus 161 -~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~ 203 (391)
....+++...+..+||.- ..+.+.+-+.|.++.+-.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n-------~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQ-------FSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred CccceEEECCCCCEEEEec-------CCCCCEEEEEECCCCcEE
Confidence 112334444456788871 123578889999887644
No 126
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=61.64 E-value=29 Score=32.24 Aligned_cols=104 Identities=9% Similarity=0.142 Sum_probs=60.2
Q ss_pred ceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEE
Q 016328 115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194 (391)
Q Consensus 115 ~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 194 (391)
--++-++++ ||+.-.. -..+-.++..|...... +.. .+.+-+++.+++++.|.|.. -+++-.
T Consensus 323 VNvVdfd~k-yIVsASg-----DRTikvW~~st~efvRt--l~g--HkRGIAClQYr~rlvVSGSS--------DntIRl 384 (499)
T KOG0281|consen 323 VNVVDFDDK-YIVSASG-----DRTIKVWSTSTCEFVRT--LNG--HKRGIACLQYRDRLVVSGSS--------DNTIRL 384 (499)
T ss_pred eeeeccccc-eEEEecC-----CceEEEEeccceeeehh--hhc--ccccceehhccCeEEEecCC--------CceEEE
Confidence 333445677 4443221 12366777776655543 433 34456777899999888754 356677
Q ss_pred EeCCCCceEECCCCCCCCC-CceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 195 LDTETKKWQDLPPLPVPRY-APATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 195 yd~~~~~W~~~~~~~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
+|.+...--. +..+.. .--+.-++++=.|-||+++ .+.+|++
T Consensus 385 wdi~~G~cLR---vLeGHEeLvRciRFd~krIVSGaYDG-----kikvWdl 427 (499)
T KOG0281|consen 385 WDIECGACLR---VLEGHEELVRCIRFDNKRIVSGAYDG-----KIKVWDL 427 (499)
T ss_pred EeccccHHHH---HHhchHHhhhheeecCceeeeccccc-----eEEEEec
Confidence 8887654211 111111 1123557888889998764 5788875
No 127
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.17 E-value=1.5e+02 Score=28.07 Aligned_cols=114 Identities=5% Similarity=-0.047 Sum_probs=58.6
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe--eecCC-CCCCCC---ceeeEeecC--cccc-cccccccccccccccCceE
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKG---ENIGVKTKK--DVVP-KRILPATFQDLPAPELKWE 103 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~-~~~r~~---~g~~~~~~~--~~~~-~~~~~~~~~~~d~~~~~W~ 103 (391)
+..+|+.-...-.-. +.+..+|..+.+ ..++- ..||.. .+..++... +.-. ...-+..+..+|..+.+=.
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 456788765322222 789999999988 44444 344431 011111111 1111 1123447889999887643
Q ss_pred -EccCCCCCccC-----ceE-EEEC-CEEEEEeccCCCCCCcceeEEEECCCCCeee
Q 016328 104 -KMKAAPVPRLD-----GAA-IQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG 152 (391)
Q Consensus 104 -~~~~~p~~r~~-----~~~-~~~~-~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 152 (391)
+++-.+.||.. ... ..-+ ..+||.- .+ ..+.+-+.|..+++-..
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~----p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FS----PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEec-CC----CCCEEEEEECCCCcEEE
Confidence 23323444522 111 2223 4677762 22 13568999998887655
No 128
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=61.15 E-value=1.5e+02 Score=28.20 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=53.2
Q ss_pred cCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCC-----CCCCCCcceEEEEEeCCE
Q 016328 99 ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD-----MPREMAHSHLGMVTDGRY 173 (391)
Q Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~~~r~~~~~~~~~~~ 173 (391)
.+.|+.+.. ..-..-.++..+|++|++.- ...++.++.+-. =.++++ +..+..+...-.+...|.
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~Gd 258 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGE 258 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCE
Confidence 378998864 22235567888999999831 123555653211 111111 111101112335556678
Q ss_pred EEEEeCccCCCCC---------C--CcceeEEEeCCCCceEECCCC
Q 016328 174 IYVVTGQYGPQCR---------G--PTAHTFVLDTETKKWQDLPPL 208 (391)
Q Consensus 174 iyv~GG~~~~~~~---------~--~~~~~~~yd~~~~~W~~~~~~ 208 (391)
|+++......... . ..-.+++.|.+..+|.++..+
T Consensus 259 LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 259 LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 9988774321100 0 123456678888899988765
No 129
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.92 E-value=1.5e+02 Score=28.02 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=79.1
Q ss_pred hheecCEEEEecCCCCcccceeEeeecCCCCe-e-ecCCCC--CCCCceeeEeecCcccccccccccccccccc--cCce
Q 016328 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS-I-ILPNNG--PQKGENIGVKTKKDVVPKRILPATFQDLPAP--ELKW 102 (391)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~-~lp~~~--~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W 102 (391)
.+..++.+|+. ..++ .+..+|+++.+ . ..+... ....-+.... .+....+.... .+++||.. +..|
T Consensus 64 ~~~~dg~v~~~-~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~i~~g~~~g-~~y~ld~~~G~~~W 135 (370)
T COG1520 64 PADGDGTVYVG-TRDG-----NIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGKIYVGSWDG-KLYALDASTGTLVW 135 (370)
T ss_pred cEeeCCeEEEe-cCCC-----cEEEEeCCCCcEEecccCcCcceeccCceEEe-CCeEEEecccc-eEEEEECCCCcEEE
Confidence 47778888887 2222 78889999988 2 111111 0111111111 11111111111 67888884 3478
Q ss_pred EEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCCCCCcceEEEEEeCCEEEEEeCc
Q 016328 103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ 180 (391)
Q Consensus 103 ~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~ 180 (391)
+.-.+.. ++..-..+..++.+|+.. + ...+.++|..+. .|+.-.+.+.+ .+.....+..++.+|+-.-.
T Consensus 136 ~~~~~~~-~~~~~~~v~~~~~v~~~s--~-----~g~~~al~~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~vy~~~~~ 206 (370)
T COG1520 136 SRNVGGS-PYYASPPVVGDGTVYVGT--D-----DGHLYALNADTGTLKWTYETPAPLS-LSIYGSPAIASGTVYVGSDG 206 (370)
T ss_pred EEecCCC-eEEecCcEEcCcEEEEec--C-----CCeEEEEEccCCcEEEEEecCCccc-cccccCceeecceEEEecCC
Confidence 7643332 344444455566777754 1 235788888755 58853222111 23333344677777775321
Q ss_pred cCCCCCCCcceeEEEeCCCC--ceEEC
Q 016328 181 YGPQCRGPTAHTFVLDTETK--KWQDL 205 (391)
Q Consensus 181 ~~~~~~~~~~~~~~yd~~~~--~W~~~ 205 (391)
. ...++.+|+++. .|+.-
T Consensus 207 -~------~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 207 -Y------DGILYALNAEDGTLKWSQK 226 (370)
T ss_pred -C------cceEEEEEccCCcEeeeee
Confidence 1 136888999765 48853
No 130
>PRK04922 tolB translocation protein TolB; Provisional
Probab=59.66 E-value=1.8e+02 Score=28.34 Aligned_cols=104 Identities=8% Similarity=-0.004 Sum_probs=55.2
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEe
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~ 170 (391)
.++.+|..+.+-+.+...+..-...+..--+.+|++....++ ..+++++|+.+++-+.+..-.. .....+....
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spD 302 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPD 302 (433)
T ss_pred EEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCC--CccceEECCC
Confidence 577778777776666554422111111111345655433222 2359999999888776643322 1112222223
Q ss_pred CCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (391)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (391)
+.+|+......+ ..+++.+|..+.+.+.+.
T Consensus 303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 303 GKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 344544432221 357899999888887765
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.48 E-value=1.3e+02 Score=28.29 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=60.8
Q ss_pred cCEEEEecCCC----CcccceeEeeecCCCCe----eecCCCCCCCC-----ceeeEeecC--ccccccccccccccccc
Q 016328 33 ADFFWASSSKF----TSSYLNIASNWSPYHNS----IILPNNGPQKG-----ENIGVKTKK--DVVPKRILPATFQDLPA 97 (391)
Q Consensus 33 ~~~ly~~GG~~----~~~~~~~~~~~d~~~~~----~~lp~~~~r~~-----~g~~~~~~~--~~~~~~~~~~~~~~~d~ 97 (391)
+..+|+..-+. -+....-++.||+++.+ +.||+. ||.. .-..+...+ -..........+-..|.
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl 125 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDL 125 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEET
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-chheecccccceEEccCCcEEEEEccCCCCeEEEEEC
Confidence 44555554411 23345678999999987 677751 1221 111111111 11122223335556666
Q ss_pred ccCceEEccCCCCC----------ccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEE
Q 016328 98 PELKWEKMKAAPVP----------RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM 167 (391)
Q Consensus 98 ~~~~W~~~~~~p~~----------r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~ 167 (391)
..++-.. .++.| |...++|.-|.-+.|.=+.++... ......|++..+-.-.-+.... .......
T Consensus 126 ~~~kvv~--ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~--~~~~~~F 200 (342)
T PF06433_consen 126 AAKKVVG--EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSR--DGGRLYF 200 (342)
T ss_dssp TTTEEEE--EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEET--TTTEEEE
T ss_pred CCCceee--eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceEC--CCCeEEE
Confidence 6665433 22222 222222222222333222233332 3345678887664333222111 1223455
Q ss_pred EEeCCEEEEE
Q 016328 168 VTDGRYIYVV 177 (391)
Q Consensus 168 ~~~~~~iyv~ 177 (391)
..++|++|-+
T Consensus 201 ~Sy~G~v~~~ 210 (342)
T PF06433_consen 201 VSYEGNVYSA 210 (342)
T ss_dssp EBTTSEEEEE
T ss_pred EecCCEEEEE
Confidence 7788888884
No 132
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=58.39 E-value=1.4e+02 Score=26.99 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=83.2
Q ss_pred ecCEEEEecCCCCcccceeEeeecCCCCe-eecCCCCCCCCceeeEeecCcccccccccccccccccccC-ceEEccCCC
Q 016328 32 VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL-KWEKMKAAP 109 (391)
Q Consensus 32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p 109 (391)
-++.+.+.|++++ ++-.||.++++ ...-.-+.+.-.+++......-........++..+|.... +.+....+.
T Consensus 73 ~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 73 SDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH 147 (315)
T ss_pred cCCceEEeccccc-----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC
Confidence 3666677777776 66788888865 2211111122223333222211122222223333333322 111111111
Q ss_pred CCccCceEEEE--C--CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCC
Q 016328 110 VPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC 185 (391)
Q Consensus 110 ~~r~~~~~~~~--~--~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 185 (391)
|..-+++.+ + +-++|-+|.+ ..+-++|..+-+-.. ..+..-.......+..||.+.+.||.++.
T Consensus 148 --~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~-- 215 (315)
T KOG0279|consen 148 --REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNCQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGE-- 215 (315)
T ss_pred --cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCcchhh--ccccccccEEEEEECCCCCEEecCCCCce--
Confidence 333333322 1 3455555554 336777776654433 22221111222334468999999998663
Q ss_pred CCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 186 RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 186 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
+..+|....+= +..+...-.-++++..-++..+.-+.. ..+..|++
T Consensus 216 ------~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl 261 (315)
T KOG0279|consen 216 ------AMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDL 261 (315)
T ss_pred ------EEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccC-----CceEEEec
Confidence 34555544331 333333334455555555555554432 23556654
No 133
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=57.63 E-value=1.6e+02 Score=27.14 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=54.4
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
++.||+.=+ ++-.. + -++..|..+..=+.+..-|.+ . ...+.|..+|-+ .+... ..+.+.+||+.+.
T Consensus 117 ~D~LLlAR~-DGh~n-L-Gvy~ldr~~g~~~~L~~~ps~--K---G~~~~D~a~F~i--~~~~~---g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 117 EDRLLLARA-DGHAN-L-GVYSLDRRTGKAEKLSSNPSL--K---GTLVHDYACFGI--NNFHK---GVSGIHCLDLISG 183 (339)
T ss_pred cCEEEEEec-CCcce-e-eeEEEcccCCceeeccCCCCc--C---ceEeeeeEEEec--ccccc---CCceEEEEEccCC
Confidence 567777643 22222 2 388999999988888766652 2 334445444433 22111 2789999999999
Q ss_pred ce--EECCC------CC-CCCCCceEEEECCEEEEE
Q 016328 201 KW--QDLPP------LP-VPRYAPATQLWRGRLHVM 227 (391)
Q Consensus 201 ~W--~~~~~------~~-~~r~~~~~~~~~~~iyv~ 227 (391)
+| +..+. -+ ..|..-.++...+++|.|
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 99 44431 11 123333455566666655
No 134
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=57.29 E-value=1.6e+02 Score=27.26 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=76.7
Q ss_pred EEEEeCCEEEEEeCcc-CCC-CCCCcceeEEE-eCCCCceEECCC---C-----CCCCCCceEEEECCEEEEEccCCCCc
Q 016328 166 GMVTDGRYIYVVTGQY-GPQ-CRGPTAHTFVL-DTETKKWQDLPP---L-----PVPRYAPATQLWRGRLHVMGGSGENR 234 (391)
Q Consensus 166 ~~~~~~~~iyv~GG~~-~~~-~~~~~~~~~~y-d~~~~~W~~~~~---~-----~~~r~~~~~~~~~~~iyv~GG~~~~~ 234 (391)
+++-.++.|+++..-. ... .......+..| .....+|+.... . ......++.++.+++||++=|.-...
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 5667789888886432 111 11112233334 345567976421 1 11223467778899999987753321
Q ss_pred cCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCC-CCCccccCcCCceecCcEEEE
Q 016328 235 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP-GSPIFKCSRRNEVVYDDVYML 313 (391)
Q Consensus 235 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~ 313 (391)
. ....|.+.+..-+....+|....+++....... +-++-||-++-...+. ...-+........-...+..|
T Consensus 83 ~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiY 154 (310)
T PF13859_consen 83 A--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIY 154 (310)
T ss_dssp ---SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEE
T ss_pred c--cccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEE
Confidence 1 345777777665555667987655543221000 0122222111000000 000000000000001123444
Q ss_pred c--CcCcEEEcCCCCCCCCCceeeEEEE-CCEEEEEccccC
Q 016328 314 D--DEMKWKVLPSMPKPDSHIEFAWVLV-NNSIVIVGGTTE 351 (391)
Q Consensus 314 d--~~~~W~~v~~~~~~~~~~~~~~~~~-~~~l~i~GG~~~ 351 (391)
- ....|+.-..++. ..+...+++.+ +++|+++.-+++
T Consensus 155 S~d~g~~W~lskg~s~-~gC~~psv~EWe~gkLlM~~~c~~ 194 (310)
T PF13859_consen 155 STDDGKTWKLSKGMSP-AGCSDPSVVEWEDGKLLMMTACDD 194 (310)
T ss_dssp ESSTTSS-EE-S-----TT-EEEEEEEE-TTEEEEEEE-TT
T ss_pred ECCCccceEeccccCC-CCcceEEEEeccCCeeEEEEeccc
Confidence 3 5789988666654 34456777888 889999977764
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=57.29 E-value=1.9e+02 Score=28.07 Aligned_cols=120 Identities=8% Similarity=0.105 Sum_probs=58.7
Q ss_pred eEeeecCCCCe--eecCCCCCCCCceeeEeecCcccccccccccccccccccCceEEcc--CCC----CCccCceEEEEC
Q 016328 50 IASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK--AAP----VPRLDGAAIQIK 121 (391)
Q Consensus 50 ~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p----~~r~~~~~~~~~ 121 (391)
.+-.+|+.|++ .+.-...+-..++...+...+....+.-.+.+. -|.-.+ .+. .|-.-++++.-+
T Consensus 19 ~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~-------vw~i~k~~~~~q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 19 NCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLH-------VWEILKKDQVVQYIVLPGPVHALASSN 91 (476)
T ss_pred ceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCcccc-------ccccCchhhhhhhcccccceeeeecCC
Confidence 46778888887 333322233344555554444444433222221 222221 111 222235556666
Q ss_pred CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCC
Q 016328 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP 183 (391)
Q Consensus 122 ~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~ 183 (391)
.--|++||.. ..+++++...++.--.+-.-+. .--.+-....|+..++.||.++.
T Consensus 92 ~G~~l~ag~i-----~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 92 LGYFLLAGTI-----SGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred CceEEEeecc-----cCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCCcc
Confidence 6667777742 2347888887765333211111 11112223357888999998763
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=56.00 E-value=2e+02 Score=27.93 Aligned_cols=170 Identities=8% Similarity=0.003 Sum_probs=77.7
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECC-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~ 169 (391)
.++.+|..+.+-+.+...+..-... ...-++ +|++....++ ..+++.+|.++.+.+.+..-+. .-......-
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~--~~~~~~wSP 296 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS--NNTEPTWFP 296 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCC--CcCceEECC
Confidence 4666676666555555443221111 111234 5555433221 1348999999988877654332 111222222
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecC
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 249 (391)
.+.+|+......+ ..+++.+|+.+..-+.+..... ........-+++.+++.+.... . +. ++.+
T Consensus 297 DG~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g----~---~~--I~~~ 360 (429)
T PRK03629 297 DSQNLAYTSDQAG------RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG----Q---QH--IAKQ 360 (429)
T ss_pred CCCEEEEEeCCCC------CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC----C---ce--EEEE
Confidence 2334443332111 3578999998877666542211 1112222334544444333221 1 11 1222
Q ss_pred CcccCCceeecCCCCCCcceeEEEECCEEEEEeCCC
Q 016328 250 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 285 (391)
Q Consensus 250 d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 285 (391)
|..+.+++.+...... .. -...-+++.+++.+..
T Consensus 361 dl~~g~~~~Lt~~~~~-~~-p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 361 DLATGGVQVLTDTFLD-ET-PSIAPNGTMVIYSSSQ 394 (429)
T ss_pred ECCCCCeEEeCCCCCC-CC-ceECCCCCEEEEEEcC
Confidence 3556666655432111 11 2233566666665543
No 137
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=55.74 E-value=1.5e+02 Score=26.37 Aligned_cols=181 Identities=15% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCEEEEEeccCCCCCCcceeEEEEC----CCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEe
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (391)
++++|++.+.+. ..+..|.. ....|...-.+|.+ -...+.+++++.+|.-.. ....+.+||
T Consensus 30 ~~r~~~~~~~~~-----~~l~E~~~~~~~~~~~~~~~~~lp~~--~~gTg~VVynGs~yynk~--------~t~~ivky~ 94 (249)
T KOG3545|consen 30 DDRIYVMNYFDG-----LMLTEYTNLEDFKRGRKAEKYRLPYS--WDGTGHVVYNGSLYYNKA--------GTRNIIKYD 94 (249)
T ss_pred cCceEEeccccC-----ceEEEeccHHHhhccCcceEEeCCCC--ccccceEEEcceEEeecc--------CCcceEEEE
Confidence 678999844332 23445543 33456665556663 334567788888887542 157788999
Q ss_pred CCCCc---eEECCCCCCC---------CCCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc----cCCceeec
Q 016328 197 TETKK---WQDLPPLPVP---------RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL----EKEWRTEI 260 (391)
Q Consensus 197 ~~~~~---W~~~~~~~~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~----~~~W~~~~ 260 (391)
+++.. |..++.+-.. ...--.++..+-|+++=-.. .+.-.+.+..+||. ..+|...-
T Consensus 95 l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~-------~~~g~iv~skLdp~tl~~e~tW~T~~ 167 (249)
T KOG3545|consen 95 LETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP-------ENAGTIVLSKLDPETLEVERTWNTTL 167 (249)
T ss_pred eecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc-------ccCCcEEeeccCHHHhheeeeecccc
Confidence 98843 5555532111 11112233334455552221 11122334455553 44564433
Q ss_pred CCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcE-EEEc-CcCcEEEcCCCCCCCCCceeeEEE
Q 016328 261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV-YMLD-DEMKWKVLPSMPKPDSHIEFAWVL 338 (391)
Q Consensus 261 ~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~d-~~~~W~~v~~~~~~~~~~~~~~~~ 338 (391)
+-+... .+.++=|.||++-...... ..| |.|| .+++=..+ ++|.+......+.+-
T Consensus 168 ~k~~~~---~aF~iCGvLY~v~S~~~~~-------------------~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~id 224 (249)
T KOG3545|consen 168 PKRSAG---NAFMICGVLYVVHSYNCTH-------------------TQISYAYDTTTGTQERI-DLPFPNPYSYATMID 224 (249)
T ss_pred CCCCcC---ceEEEeeeeEEEeccccCC-------------------ceEEEEEEcCCCceecc-cccccchhhhhhccC
Confidence 323222 3445556788887665432 113 7888 65555443 455544433333222
Q ss_pred ---ECCEEEEE
Q 016328 339 ---VNNSIVIV 346 (391)
Q Consensus 339 ---~~~~l~i~ 346 (391)
.+.+||+.
T Consensus 225 YNP~D~~LY~w 235 (249)
T KOG3545|consen 225 YNPRDRRLYAW 235 (249)
T ss_pred CCcccceeeEe
Confidence 24567764
No 138
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.48 E-value=3e+02 Score=28.79 Aligned_cols=135 Identities=7% Similarity=0.054 Sum_probs=71.2
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCeeecCCCCCCCCc-eeeEeecCcccccccccccccccccccCceEEccCCC-C
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGE-NIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAP-V 110 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~~~~r~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~ 110 (391)
++.+.+.|+.++ .+-.||..++-..++-..+..+. ++.....+...-...+...+-.+|...-+ ...... +
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr--NfRTft~P 433 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR--NFRTFTSP 433 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc--eeeeecCC
Confidence 677888888777 56778887766222222222221 22222222333333444456666655332 222222 3
Q ss_pred CccCceEEEEC--CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCcc
Q 016328 111 PRLDGAAIQIK--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181 (391)
Q Consensus 111 ~r~~~~~~~~~--~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~ 181 (391)
.|..++++.++ +.|.++|+.+. =++++++.+|++-..+-.-+.+ |-...+... .+.+.+.|.++
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~-----F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~-~~~~LaS~SWD 499 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDS-----FEIFVWSVQTGQLLDILSGHEG-PVSGLSFSP-DGSLLASGSWD 499 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccce-----EEEEEEEeecCeeeehhcCCCC-cceeeEEcc-ccCeEEecccc
Confidence 35577777777 78888988753 2488889988877664322221 222222222 34455666553
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=52.42 E-value=1.9e+02 Score=26.61 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=43.8
Q ss_pred cccccccc-cCceEEccCCCCCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCCCCCCCcceE
Q 016328 91 TFQDLPAP-ELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHL 165 (391)
Q Consensus 91 ~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~r~~~ 165 (391)
.+..|+.. ..+++.....+.+..-+.++.. ++.+|+.. .. .+.+.+||.+++. .+.+..++. ....|
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~ 129 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEG--LEGCH 129 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccC--CCccc
Confidence 45555554 3456555443332222223322 33577664 22 2457778776432 122222222 11223
Q ss_pred EEEEe--CCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 166 GMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 166 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
.+++. ++.+|+..-. .+.+..||..++
T Consensus 130 ~~~~~p~g~~l~v~~~~--------~~~v~v~d~~~~ 158 (330)
T PRK11028 130 SANIDPDNRTLWVPCLK--------EDRIRLFTLSDD 158 (330)
T ss_pred EeEeCCCCCEEEEeeCC--------CCEEEEEEECCC
Confidence 44333 3467765421 467888988763
No 140
>PRK02889 tolB translocation protein TolB; Provisional
Probab=52.27 E-value=2.3e+02 Score=27.47 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=31.5
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (391)
..++..|.....-+.+...+. .-........+.+|+.. .... . ...++.+|+.+.+=+.+...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~--~v~~p~wSPDG~~la~~-s~~~-~----~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPE--PIISPAWSPDGTKLAYV-SFES-K----KPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred cEEEEECCCCCCceEeccCCC--CcccceEcCCCCEEEEE-EccC-C----CcEEEEEECCCCCEEEeecC
Confidence 458888876655454432222 11112222223344433 2211 1 36799999988765555433
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.09 E-value=2.4e+02 Score=27.32 Aligned_cols=113 Identities=14% Similarity=0.233 Sum_probs=58.3
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE--EECCEEEEEccCCCCccCCCccceEeeee
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ--LWRGRLHVMGGSGENRYTPEVDHWSLAVK 247 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 247 (391)
-|+.||..|-. -..+-.||.+... .++..|.--.--.+. .-||...+.+ .++ ..+..||+.
T Consensus 357 pDgLifgtgt~--------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~-add----~~V~lwDLR-- 419 (506)
T KOG0289|consen 357 PDGLIFGTGTP--------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATA-ADD----GSVKLWDLR-- 419 (506)
T ss_pred CCceEEeccCC--------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEE-ecC----CeEEEEEeh--
Confidence 47777777643 3456679988776 555555411111112 2355544443 332 236777752
Q ss_pred cCCcccCCceeecCCCCCCcceeEEEEC--CEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEcCC
Q 016328 248 DGKPLEKEWRTEIPIPRGGPHRACVVVD--DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS 324 (391)
Q Consensus 248 ~~d~~~~~W~~~~~~p~~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v~~ 324 (391)
+....... +++... ......+| ++.++++|.+ -.||.++ .+.+|+++..
T Consensus 420 ----Kl~n~kt~-~l~~~~-~v~s~~fD~SGt~L~~~g~~----------------------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 420 ----KLKNFKTI-QLDEKK-EVNSLSFDQSGTYLGIAGSD----------------------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred ----hhccccee-eccccc-cceeEEEcCCCCeEEeecce----------------------eEEEEEecccccceeeeh
Confidence 11111111 122221 22334443 5567777653 1378887 7899999976
Q ss_pred CCC
Q 016328 325 MPK 327 (391)
Q Consensus 325 ~~~ 327 (391)
++.
T Consensus 472 ~~~ 474 (506)
T KOG0289|consen 472 LAD 474 (506)
T ss_pred hhh
Confidence 654
No 142
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.64 E-value=1.6e+02 Score=25.08 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred ccCCCCCCcceeEEEECCCCCeeeC--CCCCC-CCCcceEEEEEeCCEE-EEEeCccCCCCCCCcceeEEEeCCCCceEE
Q 016328 129 GYGSIDYVHSHVDIYNFTDNTWGGR--FDMPR-EMAHSHLGMVTDGRYI-YVVTGQYGPQCRGPTAHTFVLDTETKKWQD 204 (391)
Q Consensus 129 G~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~-~~~r~~~~~~~~~~~i-yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~ 204 (391)
|.+........++++|..++.|..+ .+-+. -.|. ...-..+..| +|+|...|... .--.++.|++.+..-+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS--~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVS--KGGNLYKYNLNTGNLTE 154 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEc--cCCeEEEEEccCCceeE
Confidence 3444444456799999999888754 33321 1122 2333344444 55554444332 24689999999999888
Q ss_pred CCCCCCCCCCceEEEEC
Q 016328 205 LPPLPVPRYAPATQLWR 221 (391)
Q Consensus 205 ~~~~~~~r~~~~~~~~~ 221 (391)
+-+...-......+...
T Consensus 155 ly~~~dkkqQVis~e~~ 171 (200)
T PF15525_consen 155 LYEWKDKKQQVISAEKN 171 (200)
T ss_pred eeeccccceeEEEEEEe
Confidence 88776554444444433
No 143
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=49.97 E-value=1.9e+02 Score=25.87 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=17.5
Q ss_pred EEECCEEEEEccccCCCCcccceeEecceEEEecC
Q 016328 337 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 371 (391)
Q Consensus 337 ~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~ 371 (391)
...+|.+|..|-.++. ..+|.-.+.
T Consensus 275 FSPdGE~yAsGSEDGT----------irlWQt~~~ 299 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGT----------IRLWQTTPG 299 (334)
T ss_pred ECCCCceeeccCCCce----------EEEEEecCC
Confidence 4468999999987764 256666653
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=48.11 E-value=2.2e+02 Score=26.14 Aligned_cols=53 Identities=6% Similarity=-0.061 Sum_probs=32.9
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
..+-++|+.+++=..++.-..| -|..|.+-..+-.+++.|..+. ++-.+|+..
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWDK--------TlKfWD~R~ 146 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAP-VKTCHWVPGMNYQCLVTGSWDK--------TLKFWDTRS 146 (347)
T ss_pred CceEEEEccCCCeeeeeecccc-eeEEEEecCCCcceeEeccccc--------ceeecccCC
Confidence 3478899999988887644444 3555554444555677776543 344566653
No 145
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.32 E-value=2.1e+02 Score=25.47 Aligned_cols=102 Identities=10% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCC-EEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR-YIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
++.=|..||-+ ..+..+|..|.+-.+- +....+. --++...+. .+.+-|+. -..+.++|-.+
T Consensus 70 Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aq-VNtV~fNeesSVv~Sgsf--------D~s~r~wDCRS 132 (307)
T KOG0316|consen 70 DNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQ-VNTVRFNEESSVVASGSF--------DSSVRLWDCRS 132 (307)
T ss_pred cccccccCCCC------ceEEEEEcccCeeeee--cccccce-eeEEEecCcceEEEeccc--------cceeEEEEccc
Confidence 44445555543 3488999998754331 1110011 112233333 55656655 35677899999
Q ss_pred CceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 200 KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 200 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
+.-++++.+...+.+-..+.+.+..+|.|..++ ....|++
T Consensus 133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydi 172 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDI 172 (307)
T ss_pred CCCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEe
Confidence 999988888888888888888888777776554 3556664
No 146
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=47.26 E-value=3e+02 Score=27.32 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=52.0
Q ss_pred ceEEEECCEEEEEeccCCCCCCcceeEEEECCCC--CeeeCCCCCC--CC-CcceEEEEEeC-CEEEEEeCccCCCCCCC
Q 016328 115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPR--EM-AHSHLGMVTDG-RYIYVVTGQYGPQCRGP 188 (391)
Q Consensus 115 ~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~--~~-~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 188 (391)
.+.++.+++||+.... ..+..+|..+. .|+.-...+. .. .-....+++.+ ++||+...
T Consensus 55 ~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------- 118 (488)
T cd00216 55 GTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------- 118 (488)
T ss_pred cCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------
Confidence 3446779999986542 34888998876 4886432220 00 00111234556 88887432
Q ss_pred cceeEEEeCCCC--ceEECCCCCC-C--CCCceEEEECCEEEE
Q 016328 189 TAHTFVLDTETK--KWQDLPPLPV-P--RYAPATQLWRGRLHV 226 (391)
Q Consensus 189 ~~~~~~yd~~~~--~W~~~~~~~~-~--r~~~~~~~~~~~iyv 226 (391)
...++.+|.++. .|+.-...+. . ....+.++.++.+|+
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII 161 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE
Confidence 356788998765 4876432221 0 012233455666654
No 147
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=46.23 E-value=3.9e+02 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=19.4
Q ss_pred hheecCEEEEecCCCCcccceeEeeecCCCCe
Q 016328 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS 60 (391)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (391)
-+++++.||+... .+.+..+|.++++
T Consensus 190 Plvvgg~lYv~t~------~~~V~ALDa~TGk 215 (764)
T TIGR03074 190 PLKVGDTLYLCTP------HNKVIALDAATGK 215 (764)
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCc
Confidence 4567999999754 2468888888877
No 148
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.92 E-value=43 Score=19.95 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=16.8
Q ss_pred EEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCC
Q 016328 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (391)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (391)
.+.++.++.+|+.+. ...++++|++|
T Consensus 15 ~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 345778999998754 35688888864
No 149
>PLN00181 protein SPA1-RELATED; Provisional
Probab=44.34 E-value=4.2e+02 Score=28.18 Aligned_cols=99 Identities=7% Similarity=0.049 Sum_probs=48.3
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE--eCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (391)
++.+++.|+.+ ..+.+||..+.+-. ..+.. ...-.++.. .++.++++|+.+ ..+..||..
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~--~~~~~--~~~v~~v~~~~~~g~~latgs~d--------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSI--GTIKT--KANICCVQFPSESGRSLAFGSAD--------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEE--EEEec--CCCeEEEEEeCCCCCEEEEEeCC--------CeEEEEECC
Confidence 45777888764 24778888754321 11111 111122222 246777787653 457788886
Q ss_pred CCc--eEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 199 TKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 199 ~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
+.. ...+.. ....-..+...++..++.|+.++ .+..|++
T Consensus 649 ~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~ 689 (793)
T PLN00181 649 NPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDL 689 (793)
T ss_pred CCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeC
Confidence 542 111111 11111122234566666766543 3566664
No 150
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=43.02 E-value=2.7e+02 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=12.0
Q ss_pred EEEEc-CcCcEEEcCCCCC
Q 016328 310 VYMLD-DEMKWKVLPSMPK 327 (391)
Q Consensus 310 v~~~d-~~~~W~~v~~~~~ 327 (391)
+|..| ++..++.+.....
T Consensus 300 v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 300 VYEIDGETGLLTELGRYAV 318 (330)
T ss_pred EEEEcCCCCcEEEcccccc
Confidence 56666 6677888766544
No 151
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.15 E-value=2.1e+02 Score=25.59 Aligned_cols=73 Identities=12% Similarity=0.267 Sum_probs=43.4
Q ss_pred CCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeee--CCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCC
Q 016328 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRG 187 (391)
Q Consensus 110 ~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (391)
.|++..+.+.-+++++|.- -+.+.++|+. +.++|. +-...+-...++.|=|.||
T Consensus 221 l~~s~iAS~SqDg~viIwt--------------~~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~G-------- 276 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWT--------------KDEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSGG-------- 276 (299)
T ss_pred CCceeeEEecCCCcEEEEE--------------ecCccCcccccccccCCc--ceEEEEEeccccEEEEecC--------
Confidence 4555555555566655542 3344567876 345555 4455566666776666666
Q ss_pred CcceeEEEeCCCC-ceEECCC
Q 016328 188 PTAHTFVLDTETK-KWQDLPP 207 (391)
Q Consensus 188 ~~~~~~~yd~~~~-~W~~~~~ 207 (391)
.+.+.++-...+ +|++++.
T Consensus 277 -dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 277 -DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -CcEEEEEEeCCCCcEEEccc
Confidence 355666666554 8998764
No 152
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=41.09 E-value=2.8e+02 Score=26.89 Aligned_cols=118 Identities=10% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHhhee-cCEEEEecCCCCcccceeEeeecCCCCe--eecCCCCCCCC-ceeeEeecC-ccccccccccccccccccc
Q 016328 25 MILGFALV-ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKG-ENIGVKTKK-DVVPKRILPATFQDLPAPE 99 (391)
Q Consensus 25 ~~~~~~~~-~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~~~~r~~-~g~~~~~~~-~~~~~~~~~~~~~~~d~~~ 99 (391)
.++++++. |+.||..|-.++ .+-.||..+.. ...|. +.+ .....+..+ |-.--..-...+..+|.+.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~-----~vkiwdlks~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDG-----VVKIWDLKSQTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eeEEeeEcCCceEEeccCCCc-----eEEEEEcCCccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 34555555 566666665555 67788887776 44444 111 111111111 1111111111355666654
Q ss_pred CceEEccCCCCCcc-CceEEEEC--CEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCC
Q 016328 100 LKWEKMKAAPVPRL-DGAAIQIK--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158 (391)
Q Consensus 100 ~~W~~~~~~p~~r~-~~~~~~~~--~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 158 (391)
.+ ..+..+.+-. .-....+| +...+++|.+ -.++.|+-.+.+|+.+..++.
T Consensus 421 l~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 421 LK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred hc--ccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccccceeeehhhh
Confidence 33 2333333322 22223333 3555555532 248888888999999887766
No 153
>PRK04043 tolB translocation protein TolB; Provisional
Probab=40.57 E-value=3.5e+02 Score=26.25 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=59.4
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECC-EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~ 169 (391)
.++.+|..+.+=+.+...+..- ......-++ +|++.-..++ ..+++.+|..+++++++...+. .-.......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG--IDVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC--ccCccEECC
Confidence 6777887776555554322111 111122244 5555443322 2469999999999998865543 111223333
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECC
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (391)
.+.+|+......+ ..+++++|..+.+.+++.
T Consensus 287 DG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 287 DDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCeEeCc
Confidence 4557777654322 468999999998887765
No 154
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=40.20 E-value=3.2e+02 Score=25.69 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=14.4
Q ss_pred ceeEEEECCEEEEEeCCC
Q 016328 268 HRACVVVDDRLLVIGGQE 285 (391)
Q Consensus 268 ~~~~~~~~~~i~v~GG~~ 285 (391)
+.+|..++++++|-|..+
T Consensus 362 GIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 362 GIACLQYRDRLVVSGSSD 379 (499)
T ss_pred cceehhccCeEEEecCCC
Confidence 448888999999988754
No 155
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=39.84 E-value=2.2e+02 Score=28.26 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=53.4
Q ss_pred CCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCC
Q 016328 133 IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212 (391)
Q Consensus 133 ~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 212 (391)
++..++.+..+|+.++.=-.-+++..=+. -++...++.+.+++|..|.. .-.+...|+++-.-..-+.-+..+
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~~Ir~---r~~~~~~~~~vaI~g~~G~~----~ikLvlid~~tLev~kes~~~i~~ 442 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVNGIRG---RTFYEREDDLVAIAGCSGNA----AIKLVLIDPETLEVKKESEDEISW 442 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccceecc---ceeEEcCCCEEEEeccCCch----heEEEecCcccceeeeeccccccc
Confidence 34457889999999986555555554112 24556777888899885544 334555678776655544444333
Q ss_pred CCceEEEECCEEEEE
Q 016328 213 YAPATQLWRGRLHVM 227 (391)
Q Consensus 213 ~~~~~~~~~~~iyv~ 227 (391)
.. .+.+.++.+|++
T Consensus 443 ~S-~l~~~~~~iyaV 456 (489)
T PF05262_consen 443 QS-SLIVDGQMIYAV 456 (489)
T ss_pred cC-ceEEcCCeEEEE
Confidence 33 344556677755
No 156
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=39.81 E-value=3.8e+02 Score=26.34 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=19.1
Q ss_pred HHHHHHhheecCEEEEecCCCCcccceeEeeec
Q 016328 23 FVMILGFALVADFFWASSSKFTSSYLNIASNWS 55 (391)
Q Consensus 23 ~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d 55 (391)
+|+..-.-..-..|++.||.++.- -..+.||
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~v--klW~vy~ 246 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLV--KLWNVYD 246 (503)
T ss_pred ccchhhhccceeeEEEecCCCceE--EEEEEec
Confidence 344444455678899999988732 2444554
No 157
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=39.26 E-value=2.4e+02 Score=23.96 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=46.7
Q ss_pred CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCC
Q 016328 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (391)
Q Consensus 121 ~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (391)
++++.|+-|..+ ..+..||.+ .+.+..++.. .+ ....-.-++++.++||.... ..++..||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~---~~~i~~~~~~-~~-n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~-- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVK---GKKIFSFGTQ-PR-NTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR-- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCc---ccEeEeecCC-Cc-eEEEECCCCCEEEEEEccCC-----CcEEEEEECC--
Confidence 456766655322 248899986 3333333331 12 22222246778888876431 2568889987
Q ss_pred ceEECCCCCCCCCCceEEEECCEEEEEc
Q 016328 201 KWQDLPPLPVPRYAPATQLWRGRLHVMG 228 (391)
Q Consensus 201 ~W~~~~~~~~~r~~~~~~~~~~~iyv~G 228 (391)
+++.+.....+......-.-+++.++..
T Consensus 134 ~~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 134 KKKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred CCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 4555554443332222222355544443
No 158
>PRK04043 tolB translocation protein TolB; Provisional
Probab=37.98 E-value=3.9e+02 Score=25.97 Aligned_cols=193 Identities=10% Similarity=0.012 Sum_probs=93.2
Q ss_pred eeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE
Q 016328 139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218 (391)
Q Consensus 139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 218 (391)
.++++|+.+++=+.+...+. ..........+.+|.+.-...+ ..+++.+|..+..++.+...+..-......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred EEEEEECCCCcEEEEecCCC--cEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 69999998887666654332 1111222223446655543322 478999999999999886544311112222
Q ss_pred EECCEEEEEccCCCCccCCCccceEeeeecCCcccCCceeecCCCCCCcceeEEEECCEEEEEeCCCCCCCcCCCCCccc
Q 016328 219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298 (391)
Q Consensus 219 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 298 (391)
.-+.+|++.-...+ ..+.|.. |..+.+.+++..-.. .. ....-+++.+++-.......
T Consensus 286 PDG~~I~F~Sdr~g-----~~~Iy~~-----dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~--------- 343 (419)
T PRK04043 286 EDDKRIVFVSDRLG-----YPNIFMK-----KLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNE--------- 343 (419)
T ss_pred CCCCEEEEEECCCC-----CceEEEE-----ECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcc---------
Confidence 23445666643321 1222322 344555544322111 11 22333554344433221100
Q ss_pred cCcCCceecCcEEEEc-CcCcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCcccccc
Q 016328 299 CSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVSAF 377 (391)
Q Consensus 299 ~~~~~~~~~~~v~~~d-~~~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 377 (391)
......+++.+| .+..++.+.... . ....+ ...||+.+++-...... ..++.++++-..-..
T Consensus 344 ----~~~~~~~I~v~d~~~g~~~~LT~~~--~-~~~p~-~SPDG~~I~f~~~~~~~---------~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 344 ----FGKNTFNLYLISTNSDYIRRLTANG--V-NQFPR-FSSDGGSIMFIKYLGNQ---------SALGIIRLNYNKSFL 406 (419)
T ss_pred ----cCCCCcEEEEEECCCCCeEECCCCC--C-cCCeE-ECCCCCEEEEEEccCCc---------EEEEEEecCCCeeEE
Confidence 000123688888 788888886532 1 11222 45666654444332111 267888886544333
Q ss_pred C
Q 016328 378 Y 378 (391)
Q Consensus 378 l 378 (391)
+
T Consensus 407 l 407 (419)
T PRK04043 407 F 407 (419)
T ss_pred e
Confidence 3
No 159
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=37.35 E-value=3.7e+02 Score=25.49 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=52.1
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe--eecCC--CCCCCCceeeEeecC-cccccccccccccccccccCceEEccC
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPN--NGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKA 107 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~lp~--~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~ 107 (391)
.|..|+.|+.+. ++-.||.++++ .+++. ... .++++.... |.++...- ..+-+||...|+-.+
T Consensus 162 ~n~wf~tgs~Dr-----tikIwDlatg~LkltltGhi~~v---r~vavS~rHpYlFs~ged-k~VKCwDLe~nkvIR--- 229 (460)
T KOG0285|consen 162 GNEWFATGSADR-----TIKIWDLATGQLKLTLTGHIETV---RGVAVSKRHPYLFSAGED-KQVKCWDLEYNKVIR--- 229 (460)
T ss_pred CceeEEecCCCc-----eeEEEEcccCeEEEeecchhhee---eeeeecccCceEEEecCC-CeeEEEechhhhhHH---
Confidence 456667776555 67899999999 77774 111 134443333 44444322 256677766654211
Q ss_pred CCCCccCceEEEE----C--CEEEEEeccCCCCCCcceeEEEECCCC
Q 016328 108 APVPRLDGAAIQI----K--NLLYVFAGYGSIDYVHSHVDIYNFTDN 148 (391)
Q Consensus 108 ~p~~r~~~~~~~~----~--~~vyv~GG~~~~~~~~~~~~~yd~~~~ 148 (391)
.-.+|-.+++ . ..+++.||.+. .+-++|..+.
T Consensus 230 ---~YhGHlS~V~~L~lhPTldvl~t~grDs------t~RvWDiRtr 267 (460)
T KOG0285|consen 230 ---HYHGHLSGVYCLDLHPTLDVLVTGGRDS------TIRVWDIRTR 267 (460)
T ss_pred ---HhccccceeEEEeccccceeEEecCCcc------eEEEeeeccc
Confidence 0112222221 2 46888888753 3566777765
No 160
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.01 E-value=3e+02 Score=24.46 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=73.6
Q ss_pred eeEeeecCCCCe-eecCCCCCCCCceeeEeecC--cccccccccccccccccccCceEEccCCCCCcc-Cce----EEEE
Q 016328 49 NIASNWSPYHNS-IILPNNGPQKGENIGVKTKK--DVVPKRILPATFQDLPAPELKWEKMKAAPVPRL-DGA----AIQI 120 (391)
Q Consensus 49 ~~~~~~d~~~~~-~~lp~~~~r~~~g~~~~~~~--~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~----~~~~ 120 (391)
.++--|||..+. +.--+.+.+.-..++..... ...|+ -...+..+|..+.+=. .|. +|. ++.+
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G--gDk~v~vwDV~TGkv~-------Rr~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG--GDKAVQVWDVNTGKVD-------RRFRGHLAQVNTVRF 109 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCC--CCceEEEEEcccCeee-------eecccccceeeEEEe
Confidence 367789998887 33333222222222222222 22222 1235667777665421 111 222 2334
Q ss_pred CC--EEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCC
Q 016328 121 KN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (391)
Q Consensus 121 ~~--~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (391)
++ .|.+-|+.+ .++.++|...++-+++.-+.. .+.......+.++..|.|..++. +-.||+.
T Consensus 110 NeesSVv~SgsfD------~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~heIvaGS~DGt--------vRtydiR 173 (307)
T KOG0316|consen 110 NEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHEIVAGSVDGT--------VRTYDIR 173 (307)
T ss_pred cCcceEEEecccc------ceeEEEEcccCCCCccchhhh--hcCceeEEEecccEEEeeccCCc--------EEEEEee
Confidence 33 566666654 458899999999998877766 67777777788888888766553 4568876
Q ss_pred CCc
Q 016328 199 TKK 201 (391)
Q Consensus 199 ~~~ 201 (391)
..+
T Consensus 174 ~G~ 176 (307)
T KOG0316|consen 174 KGT 176 (307)
T ss_pred cce
Confidence 554
No 161
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=36.69 E-value=4.7e+02 Score=26.51 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCccCceEEEE--CCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCC
Q 016328 110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRG 187 (391)
Q Consensus 110 ~~r~~~~~~~~--~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (391)
.|+.+..++.. .-.||+.|- -.+++++|+..++|-.- +....+--.+...---+.|+++||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~------ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTED------ 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccc--cccccccceeeeecCccceEEecccC------
Confidence 44444444332 336888763 34699999999999762 22211112222222234588888863
Q ss_pred CcceeEEEeCCCCc
Q 016328 188 PTAHTFVLDTETKK 201 (391)
Q Consensus 188 ~~~~~~~yd~~~~~ 201 (391)
..++.+||.+..
T Consensus 197 --g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --GVVEFWDPRDKS 208 (703)
T ss_pred --ceEEEecchhhh
Confidence 467888887764
No 162
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=35.23 E-value=1.4e+02 Score=26.62 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=62.7
Q ss_pred ccccCceEEccCCC-CCccCc-eEEEE-CCEEEEEeccCCCCCCcceeEEEECC-CCCeeeCC--CCCCCCCcceEEEEE
Q 016328 96 PAPELKWEKMKAAP-VPRLDG-AAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFT-DNTWGGRF--DMPREMAHSHLGMVT 169 (391)
Q Consensus 96 d~~~~~W~~~~~~p-~~r~~~-~~~~~-~~~vyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~--~~p~~~~r~~~~~~~ 169 (391)
+-...+|+....++ ...... +++.. ++.|+++--.. ... .....+..+ -.+|+... .+|. ......+..
T Consensus 141 ~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~--~~~~~~~~~ 215 (275)
T PF13088_consen 141 DDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPN--PNSSISLVR 215 (275)
T ss_dssp SSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSS--CCEEEEEEE
T ss_pred CCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCc--ccCCceEEE
Confidence 44445798887664 323333 33333 56888887553 211 224445544 34799854 3444 333333333
Q ss_pred -eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCC----CCCceEEEE-CCEEEE
Q 016328 170 -DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP----RYAPATQLW-RGRLHV 226 (391)
Q Consensus 170 -~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~-~~~iyv 226 (391)
-++.++++... ...+ ..-.+..-.....+|+....+... -.+.+++.. +++|||
T Consensus 216 ~~~g~~~~~~~~-~~~r--~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 216 LSDGRLLLVYNN-PDGR--SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CTTSEEEEEEEC-SSTS--EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEC-CCCC--CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 46788887762 1111 122233333347889876544322 234455555 568886
No 163
>PTZ00420 coronin; Provisional
Probab=34.83 E-value=5.1e+02 Score=26.42 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=15.7
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS 60 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (391)
+..+++.||.++ .+..||..+.+
T Consensus 137 g~~iLaSgS~Dg-----tIrIWDl~tg~ 159 (568)
T PTZ00420 137 NYYIMCSSGFDS-----FVNIWDIENEK 159 (568)
T ss_pred CCeEEEEEeCCC-----eEEEEECCCCc
Confidence 344556677665 67789988876
No 164
>PRK10115 protease 2; Provisional
Probab=33.76 E-value=5.8e+02 Score=26.72 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred ceeEEEECCCCCeee--CCCCCCCCCcceEEEEEe-CCEEEEEeCccCCCCCCCcceeEEEeC--CCCceEECCCCCCCC
Q 016328 138 SHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDT--ETKKWQDLPPLPVPR 212 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~--~~~~p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r 212 (391)
..++++++.++.-+. +-.-+. .......... +++..++...... .+.++.|+. .+..|..+-+.+...
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~--~~~~~~~~~s~d~~~l~i~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKD--DTFYVSLHKTTSKHYVVIHLASAT-----TSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCC--CCEEEEEEEcCCCCEEEEEEECCc-----cccEEEEECcCCCCCceEEEECCCCC
Confidence 569999999884322 211111 1122222333 4443334333221 456788883 233443332222221
Q ss_pred CCceEEEECCEEEEEccCCCCccCCCccceEeeeecCCcc-cCCceeecCCCCCCcceeEEEECCEEEEEeCCC
Q 016328 213 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL-EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 285 (391)
Q Consensus 213 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 285 (391)
. ......++.+|+.--.. ...+.+... +.. ..+|+.+-+......--.....++.|++..-..
T Consensus 272 ~-~~~~~~~~~ly~~tn~~-------~~~~~l~~~--~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~ 335 (686)
T PRK10115 272 E-YSLDHYQHRFYLRSNRH-------GKNFGLYRT--RVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR 335 (686)
T ss_pred E-EEEEeCCCEEEEEEcCC-------CCCceEEEe--cCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC
Confidence 1 22334567888874322 122222222 222 468988765522221124455678877775443
No 165
>PTZ00421 coronin; Provisional
Probab=32.72 E-value=5.1e+02 Score=25.82 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=15.2
Q ss_pred CEEEEecCCCCcccceeEeeecCCCCe
Q 016328 34 DFFWASSSKFTSSYLNIASNWSPYHNS 60 (391)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (391)
+.+++.||.++ .+..||..+++
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~ 159 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGK 159 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCe
Confidence 34666676555 67788888776
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=32.60 E-value=5.7e+02 Score=26.30 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=20.6
Q ss_pred eeEeeecCCCCe---eecCCCCCCCCceeeEe
Q 016328 49 NIASNWSPYHNS---IILPNNGPQKGENIGVK 77 (391)
Q Consensus 49 ~~~~~~d~~~~~---~~lp~~~~r~~~g~~~~ 77 (391)
..+|.||+..+= ..++-++.|+-.+++-.
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~ 78 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA 78 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEc
Confidence 368999999875 44444667777777776
No 167
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=31.89 E-value=2.9e+02 Score=25.03 Aligned_cols=149 Identities=9% Similarity=-0.046 Sum_probs=0.0
Q ss_pred CEEEEecCCCCcccceeEeeecCCCCeeecCC-CCCCCCceeeEeecC-cccccccccccccccccccCceEEccCCCCC
Q 016328 34 DFFWASSSKFTSSYLNIASNWSPYHNSIILPN-NGPQKGENIGVKTKK-DVVPKRILPATFQDLPAPELKWEKMKAAPVP 111 (391)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~~~lp~-~~~r~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 111 (391)
+...+.|..+| .+..||..++...+-+ ...-+...-...... ...-...-......+|..+-+-.+.=....|
T Consensus 159 ~~~ii~Ghe~G-----~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 159 GETIIAGHEDG-----SISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred CCEEEEecCCC-----cEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Q ss_pred ccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCCe----------eeCCCCCCCCCcceEEEEEeCCEEEEEeCcc
Q 016328 112 RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW----------GGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181 (391)
Q Consensus 112 r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W----------~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~ 181 (391)
....++.-+.+.|.+-||++ ..+|-.=+....+. +++......+.--+..+.--+++.|.-||.+
T Consensus 234 vN~aaisP~~d~VilgGGqe-----A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQE-----AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED 308 (327)
T ss_pred ccceecccccceEEecCCce-----eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC
Q ss_pred CCCCCCCcceeEEEeCC
Q 016328 182 GPQCRGPTAHTFVLDTE 198 (391)
Q Consensus 182 ~~~~~~~~~~~~~yd~~ 198 (391)
+ .-.++.||..
T Consensus 309 G------~VR~h~Fd~~ 319 (327)
T KOG0643|consen 309 G------YVRLHHFDSN 319 (327)
T ss_pred c------eEEEEEeccc
No 168
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=30.12 E-value=7e+02 Score=26.56 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=23.0
Q ss_pred eEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeCCCC
Q 016328 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDM 156 (391)
Q Consensus 116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~ 156 (391)
+-+++++.||+.... +.+..+|..|.+ |+.-...
T Consensus 189 TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred CCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCC
Confidence 346789999997542 347888887654 7764433
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=30.01 E-value=5.2e+02 Score=25.02 Aligned_cols=61 Identities=7% Similarity=0.086 Sum_probs=34.6
Q ss_pred ceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCC-EEEEEeCccCCCCCCCcceeEEEeCCCCceEECCC
Q 016328 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (391)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (391)
..++++|..+.+-+.+...+. ....... .-++ +|++....++ ..+++.+|+.+...+.+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g--~~~~~~w-SPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG--HNGAPAF-SPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC--ccCceeE-CCCCCEEEEEEecCC------cEEEEEEECCCCCeEeecc
Confidence 358899998877666554443 1111222 2244 4544332222 3568899998887766643
No 170
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=27.60 E-value=5.5e+02 Score=24.52 Aligned_cols=251 Identities=16% Similarity=0.067 Sum_probs=0.0
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe---eecCCCCCC----CCceeeEeecC-ccccc---ccccccccccccccCc
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS---IILPNNGPQ----KGENIGVKTKK-DVVPK---RILPATFQDLPAPELK 101 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~---~~lp~~~~r----~~~g~~~~~~~-~~~~~---~~~~~~~~~~d~~~~~ 101 (391)
++...+++=..+++-...+..+|.++++ ..++..... ...+...+... ..... ......++++...+..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Q ss_pred eE--EccCCCCCcc-CceEEEECCEEEEEeccCCCCCCcceeEEEECCCC-----CeeeCCCCCCCCCcceEEEEEeCCE
Q 016328 102 WE--KMKAAPVPRL-DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTDGRY 173 (391)
Q Consensus 102 W~--~~~~~p~~r~-~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~~~r~~~~~~~~~~~ 173 (391)
-+ .+-.-+.+.. ...+..-.+.=|++-....... .+.++..|.... .|+.+.+-.. -....+...++.
T Consensus 214 ~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~~~ 289 (414)
T PF02897_consen 214 SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPRED---GVEYYVDHHGDR 289 (414)
T ss_dssp GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSS---S-EEEEEEETTE
T ss_pred HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCC---ceEEEEEccCCE
Q ss_pred EEEEeCccCCCCCCCcceeEEEeCCCCc---eE-ECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEeeeecC
Q 016328 174 IYVVTGQYGPQCRGPTAHTFVLDTETKK---WQ-DLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249 (391)
Q Consensus 174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 249 (391)
+|+.-..+... ..+..+++.... |. .+.+-......-.+...++.|++. ....-.-.+.++++
T Consensus 290 ~yi~Tn~~a~~-----~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~--------~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 290 LYILTNDDAPN-----GRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS--------YRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEE-TT-TT------EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE--------EEETTEEEEEEEET
T ss_pred EEEeeCCCCCC-----cEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE--------EEECCccEEEEEEC
Q ss_pred CcccCCceeecCCCCCCcceeEEEECCE---EEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEc-CcCcEEEc
Q 016328 250 KPLEKEWRTEIPIPRGGPHRACVVVDDR---LLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 322 (391)
Q Consensus 250 d~~~~~W~~~~~~p~~~~~~~~~~~~~~---i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~W~~v 322 (391)
+ ........++|....-.+...-.+. .|.+.+...+.. +|.|| .+++.+.+
T Consensus 357 ~--~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~--------------------~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 357 D--DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPT--------------------VYRYDLATGELTLL 411 (414)
T ss_dssp T---TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEE--------------------EEEEETTTTCEEEE
T ss_pred C--CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCE--------------------EEEEECCCCCEEEE
No 171
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=27.06 E-value=4.3e+02 Score=26.45 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=48.4
Q ss_pred eEeeecCCCCe--eecCCCCCCCCceeeEeecC--cccccccccccccccccccCceEEccCCCCCccCceEEEECCEEE
Q 016328 50 IASNWSPYHNS--IILPNNGPQKGENIGVKTKK--DVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLY 125 (391)
Q Consensus 50 ~~~~~d~~~~~--~~lp~~~~r~~~g~~~~~~~--~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vy 125 (391)
.++-++....+ .+++...|-+ .+.-.-.+ +..+..++...+..||...+--..+++-|..+..+ .-.++|+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVh--dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~f---np~g~ii 326 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVH--DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFF---NPHGNII 326 (566)
T ss_pred eEEEEEecCceEEEecCCCCCce--EEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEE---CCCCCEE
Confidence 34444444333 5555433333 22222222 55566677778888888766544444333222222 2245677
Q ss_pred EEeccCCCCCCcceeEEEECCC
Q 016328 126 VFAGYGSIDYVHSHVDIYNFTD 147 (391)
Q Consensus 126 v~GG~~~~~~~~~~~~~yd~~~ 147 (391)
++.|... +..++|++|..+
T Consensus 327 ~lAGFGN---L~G~mEvwDv~n 345 (566)
T KOG2315|consen 327 LLAGFGN---LPGDMEVWDVPN 345 (566)
T ss_pred EEeecCC---CCCceEEEeccc
Confidence 7777754 345699999876
No 172
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=26.71 E-value=5.9e+02 Score=24.63 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=70.9
Q ss_pred EeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE-EECCEEEEEccCCCCccCCCccceEeeee
Q 016328 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWSLAVK 247 (391)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 247 (391)
-.+|.+...||.+..++ ++|+.+..=...=.- ..+.-+++. .-||.....||.+ +...+|++..-
T Consensus 312 ~~DGSL~~tGGlD~~~R--------vWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r 377 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGR--------VWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMR 377 (459)
T ss_pred cCCCceeeccCccchhh--------eeecccCcEEEEecc-cccceeeEeECCCceEEeecCCC-----CcEEEeeeccc
Confidence 36899999999876543 466655542221110 111222222 3478888888764 35788886411
Q ss_pred cCCcccCCceeecCCCCCCcceeEEE---ECCEEEEEeCCCCCCCcCCCCCccccCcCCceecCcEEEEcCcCcEEEcCC
Q 016328 248 DGKPLEKEWRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 324 (391)
Q Consensus 248 ~~d~~~~~W~~~~~~p~~~~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~W~~v~~ 324 (391)
. .+-.+|.-..-.+-|. ..|+.++..+++.. +-.+ .+..|+.+..
T Consensus 378 ~---------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t----------------------~kiW-s~~~~~~~ks 425 (459)
T KOG0272|consen 378 S---------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT----------------------VKIW-STRTWSPLKS 425 (459)
T ss_pred c---------cceecccccchhhheEecccCCeEEEEcccCcc----------------------eeee-cCCCcccchh
Confidence 1 1222221110011121 25677777777532 3333 4678888877
Q ss_pred CCCCCCCceeeEEEECCEEEEEccccC
Q 016328 325 MPKPDSHIEFAWVLVNNSIVIVGGTTE 351 (391)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~i~GG~~~ 351 (391)
|.--.......-...++..++.++++.
T Consensus 426 LaGHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 426 LAGHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred hcCCccceEEEEeccCCceEEEeccCc
Confidence 653333322222345667777777764
No 173
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=25.85 E-value=3.7e+02 Score=24.50 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred EeCCEEEEEeCccCCCC-CCCcceeEEEeCC-CCceEECCC-CCCCCCCceEEEECCEEEEEccCCCCccCCCccceEee
Q 016328 169 TDGRYIYVVTGQYGPQC-RGPTAHTFVLDTE-TKKWQDLPP-LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA 245 (391)
Q Consensus 169 ~~~~~iyv~GG~~~~~~-~~~~~~~~~yd~~-~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 245 (391)
.++++.+|+|-...... . .+.+..|.-. .++|+.++. +...-.-+=.+-++++ .|+||.......+....|...
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe--~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~ge-lifGGvev~~~~~~~l~wrt~ 110 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWE--HSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGE-LIFGGVEVFPNDGGVLSWRTV 110 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS----EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTE-EEEEEEEEE-------EEEEE
T ss_pred eECCEEEEEeeeecCCchh--ccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCE-EEEeeEEEeecCCCceEEEEE
Q ss_pred eecCCcccCCceeecCCCCCCcceeEEEE-CCEEEEE
Q 016328 246 VKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVI 281 (391)
Q Consensus 246 ~~~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~i~v~ 281 (391)
.|... -..-+....-|......-.+.+ +++|-||
T Consensus 111 FYrG~--~~~L~~f~~GPd~MKDiRlveL~DG~IGVf 145 (298)
T PF08950_consen 111 FYRGK--IHDLKYFFTGPDGMKDIRLVELADGRIGVF 145 (298)
T ss_dssp EEEEE--TTEEEEEEE--TT----EEEE-TTS-EEEE
T ss_pred EEecC--hhheeeeecCCcccceeEEEEecCCeEEEE
No 174
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=4.8e+02 Score=22.84 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=42.2
Q ss_pred ceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCc--eEECCCCCCCCCCceEEEECCEEEEEccCC
Q 016328 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSG 231 (391)
Q Consensus 163 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 231 (391)
+..+....+++||..-|..+ .+.+.++|..+.+ |+.--+ |..-.+-..+.+++.+|..-=.+
T Consensus 47 fTQGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e 110 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE 110 (262)
T ss_pred hhcceeeeCCEEEEeccccc------cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc
Confidence 34456677889998877655 5678899998654 544222 23445667788999999886443
No 175
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=24.38 E-value=5.3e+02 Score=23.23 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=43.3
Q ss_pred eeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE
Q 016328 139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218 (391)
Q Consensus 139 ~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 218 (391)
++-.+|+++=.--+--.||. .-..+..--+..+||.||.+ -.+++||..|.. ++........++.-+
T Consensus 206 sV~Fwdaksf~~lKs~k~P~---nV~SASL~P~k~~fVaGged--------~~~~kfDy~Tge--Ei~~~nkgh~gpVhc 272 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPC---NVESASLHPKKEFFVAGGED--------FKVYKFDYNTGE--EIGSYNKGHFGPVHC 272 (334)
T ss_pred eeEEeccccccceeeccCcc---ccccccccCCCceEEecCcc--------eEEEEEeccCCc--eeeecccCCCCceEE
Confidence 36666664432222223444 12223333456899999964 456788888765 332222233332222
Q ss_pred ---EECCEEEEEccCCC
Q 016328 219 ---LWRGRLHVMGGSGE 232 (391)
Q Consensus 219 ---~~~~~iyv~GG~~~ 232 (391)
.-++.+|..|..++
T Consensus 273 VrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 273 VRFSPDGELYASGSEDG 289 (334)
T ss_pred EEECCCCceeeccCCCc
Confidence 24889999986654
No 176
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.23 E-value=5.6e+02 Score=23.70 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=59.9
Q ss_pred cCEEEEecCCCCcccceeEeeecCCCCe-eecCC-CCCCCCceeeEeecCcc----cccccccccccccccccCceEEcc
Q 016328 33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTKKDV----VPKRILPATFQDLPAPELKWEKMK 106 (391)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~lp~-~~~r~~~g~~~~~~~~~----~~~~~~~~~~~~~d~~~~~W~~~~ 106 (391)
++...+.|+.++ .+-.||+.+++ ..+.. ..|-. .+-.+.... ..+. -..++-.+|..... .+.
T Consensus 83 dgskVf~g~~Dk-----~~k~wDL~S~Q~~~v~~Hd~pvk---t~~wv~~~~~~cl~TGS-WDKTlKfWD~R~~~--pv~ 151 (347)
T KOG0647|consen 83 DGSKVFSGGCDK-----QAKLWDLASGQVSQVAAHDAPVK---TCHWVPGMNYQCLVTGS-WDKTLKFWDTRSSN--PVA 151 (347)
T ss_pred CCceEEeeccCC-----ceEEEEccCCCeeeeeeccccee---EEEEecCCCcceeEecc-cccceeecccCCCC--eee
Confidence 445555666565 56789999999 55444 21111 111111111 1111 11234444444321 233
Q ss_pred CCCCCccCceEEEECCEEEEEeccCCCCCCcceeEEEECCCCC--eeeC-CCCCCCCCcceEEEEEeCCEEEEEeCccC
Q 016328 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGR-FDMPREMAHSHLGMVTDGRYIYVVTGQYG 182 (391)
Q Consensus 107 ~~p~~r~~~~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~-~~~p~~~~r~~~~~~~~~~~iyv~GG~~~ 182 (391)
.+..|-..+++-++...+.|.-+ -..+.+|+++... .+.+ .+|... ..+.++.-++..|.+|+..|
T Consensus 152 t~~LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~te~k~~~SpLk~Q---~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 152 TLQLPERVYAADVLYPMAVVATA-------ERHIAVYNLENPPTEFKRIESPLKWQ---TRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred eeeccceeeehhccCceeEEEec-------CCcEEEEEcCCCcchhhhhcCcccce---eeEEEEEecCCceEeeeecc
Confidence 33334334444433433333322 2348889886543 2222 233321 12344455777889998766
No 177
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.59 E-value=3.5e+02 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=27.9
Q ss_pred CcEEEcCCCCCCCCCceeeEEEECCEEEEEccccCCCCcccceeEecceEEEecCccc
Q 016328 317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374 (391)
Q Consensus 317 ~~W~~v~~~~~~~~~~~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~v~~~d~~~~~ 374 (391)
.+|+..+....+-.-.+.+++.+++..++-||.++ .|++||..+..
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe------------tI~IYDm~k~~ 74 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE------------TIHIYDMRKRK 74 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCC------------cEEEEeccchh
Confidence 46766654333222223455677777777777654 59999997665
No 178
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=22.47 E-value=5.5e+02 Score=23.55 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=69.0
Q ss_pred CCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEECCCCCCCCCCceEE-EECCEEEE
Q 016328 148 NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHV 226 (391)
Q Consensus 148 ~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv 226 (391)
|.|..+ .+|...+...-+.+..+.+.+++|++ -.+..=|-..++|++.-.. ..|+.+..+ .++.+=.+
T Consensus 32 ~p~~~v-elp~~s~~l~ia~~~~g~~gwlVg~r---------gtiletdd~g~tw~qal~~-~gr~~f~sv~f~~~egw~ 100 (339)
T COG4447 32 NPWTDV-ELPTLSPTLDIAFTESGSHGWLVGGR---------GTILETDDGGITWAQALDF-LGRHAFHSVSFLGMEGWI 100 (339)
T ss_pred Ccceee-eccccCcccceeEeecCcceEEEcCc---------ceEEEecCCcccchhhhch-hhhhheeeeeeecccccc
Confidence 445554 23332233345566678899999984 3455566678899876532 335554444 34444455
Q ss_pred EccCCCCccCCCccceEeeeecCCcccCCceeecC-CCCCCcceeEEEECCE-EEEEeCCCCCCCcCCCCCccccCcCCc
Q 016328 227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVVVDDR-LLVIGGQEGDFMAKPGSPIFKCSRRNE 304 (391)
Q Consensus 227 ~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~~~~ 304 (391)
.|-- ...|.. +....+|.+++. .-....-.+...++++ -+++|-.
T Consensus 101 vGe~--------sqll~T-----~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~-------------------- 147 (339)
T COG4447 101 VGEP--------SQLLHT-----TDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQ-------------------- 147 (339)
T ss_pred cCCc--------ceEEEe-----cCCCcchhhchhhcCCCCCcceeEEecchhhhhhccc--------------------
Confidence 5421 122221 256778887642 2222223355555554 3444432
Q ss_pred eecCcEEEEc-CcCcEEEcCC
Q 016328 305 VVYDDVYMLD-DEMKWKVLPS 324 (391)
Q Consensus 305 ~~~~~v~~~d-~~~~W~~v~~ 324 (391)
..||.-+ -.+.|+.+.+
T Consensus 148 ---Gail~T~DgGk~Wk~l~e 165 (339)
T COG4447 148 ---GAILKTTDGGKNWKALVE 165 (339)
T ss_pred ---ceEEEecCCcccHhHhcc
Confidence 1256555 5678988754
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=21.90 E-value=7.3e+02 Score=23.97 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=48.1
Q ss_pred cccccccccCceEEccCCCCCccCceEEEECCEEEEEec-cCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEE
Q 016328 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAG-YGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (391)
Q Consensus 91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~vyv~GG-~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~ 169 (391)
.++.+|..+.+-+.+...+..-. .....-+++.++++. .++. .+++.+|+.++....+..-.. .-.......
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSp 301 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSGAG--NNTEPSWSP 301 (429)
T ss_pred EEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccCCC--CcCCEEECC
Confidence 46667776665555544332111 111122444344433 2221 248889998887766543222 111222222
Q ss_pred eCCEEEEEeCccCCCCCCCcceeEEEeCCCCceEEC
Q 016328 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205 (391)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~ 205 (391)
.+.+|+.....++ ...++.+|..+..-+.+
T Consensus 302 DG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 302 DGQSILFTSDRSG------SPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCeEEe
Confidence 2334554433222 35778888766543433
No 180
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.19 E-value=8.8e+02 Score=24.66 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=20.0
Q ss_pred ecCCcccCCceeecCCCCCCcceeEEEE--CCEEEEEeCCCCC
Q 016328 247 KDGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEGD 287 (391)
Q Consensus 247 ~~~d~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~~ 287 (391)
|.+|.+...|-..-....+.. -++.+ -..|+.+|+.++.
T Consensus 158 YRlNLEqGrfL~P~~~~~~~l--N~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 158 YRLNLEQGRFLNPFETDSGEL--NVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred EEEEccccccccccccccccc--eeeeecCccceEEecccCce
Confidence 334566666654322222222 33333 3568889987643
No 181
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.91 E-value=6.7e+02 Score=23.17 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=50.5
Q ss_pred eEEEECCEEEEEeccCCCCCCcceeEEEECCCCCeeeCCCCCCCCCcceEEEEEeCCEEEEEeCccCCCCCCCcceeEEE
Q 016328 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195 (391)
Q Consensus 116 ~~~~~~~~vyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 195 (391)
.++..+..-.++||.++ .+-+||..+..=..+..-..+. |. ..-. ......|.||.+. .+..+
T Consensus 59 ~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i-~c-i~~~-~~~~~vIsgsWD~--------~ik~w 121 (323)
T KOG1036|consen 59 DCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGI-RC-IEYS-YEVGCVISGSWDK--------TIKFW 121 (323)
T ss_pred eeeccCCceEEEeccCc------eEEEEEecCCcceeeccCCCce-EE-EEee-ccCCeEEEcccCc--------cEEEE
Confidence 34555666667787653 4889999988776665443321 11 1111 2344677888754 45678
Q ss_pred eCCCCceEECCCCCCCCCCceEEEECCEEEEEccC
Q 016328 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 230 (391)
Q Consensus 196 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 230 (391)
|+.... .....-.+-.-.++.+.+++| |+|+.
T Consensus 122 D~R~~~--~~~~~d~~kkVy~~~v~g~~L-vVg~~ 153 (323)
T KOG1036|consen 122 DPRNKV--VVGTFDQGKKVYCMDVSGNRL-VVGTS 153 (323)
T ss_pred eccccc--cccccccCceEEEEeccCCEE-EEeec
Confidence 887522 111122222334444555554 45543
No 182
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.25 E-value=1e+03 Score=25.09 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=33.0
Q ss_pred cceeEEEeCCCCceEECCCCCCCCCCceEEEECCEEEEEccCCCCccCCCccceEe
Q 016328 189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (391)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 244 (391)
+.++.+|+..++..-.-..-..+|....+..-++.+.+.|+-++ .+++|+.
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~ 379 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWNT 379 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEec
Confidence 56778888777666554444455555444556788888887643 4777773
No 183
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.09 E-value=7e+02 Score=23.07 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=34.1
Q ss_pred eEEEECCCCC-eeeCCCCCC--CCCcceEEEEEeCCEEEEEeCc---cCCCCCCCcceeEEEeCCCCceEEC
Q 016328 140 VDIYNFTDNT-WGGRFDMPR--EMAHSHLGMVTDGRYIYVVTGQ---YGPQCRGPTAHTFVLDTETKKWQDL 205 (391)
Q Consensus 140 ~~~yd~~~~~-W~~~~~~p~--~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~yd~~~~~W~~~ 205 (391)
+..+++++.. |+.+..... +..|.+=..+--++.||+---. .+.......-.+|++||. .....+
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l 157 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRL 157 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEe
Confidence 5667765443 355433222 2256666677777888764222 011111235589999994 444444
Done!