Query 016329
Match_columns 391
No_of_seqs 171 out of 1091
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00145 putative inner membra 100.0 1.3E-40 2.9E-45 314.6 17.5 155 2-190 59-213 (223)
2 TIGR03592 yidC_oxa1_cterm memb 100.0 4.4E-40 9.6E-45 301.2 17.4 152 2-188 30-181 (181)
3 PRK02944 OxaA-like protein pre 100.0 3.7E-39 8E-44 310.3 17.6 152 2-188 87-242 (255)
4 PRK01001 putative inner membra 100.0 2.2E-39 4.8E-44 344.7 17.0 171 2-190 604-778 (795)
5 PRK00247 putative inner membra 100.0 1.6E-38 3.4E-43 324.1 22.3 204 2-206 60-289 (429)
6 PF02096 60KD_IMP: 60Kd inner 100.0 9.7E-39 2.1E-43 293.7 17.3 164 2-190 31-197 (198)
7 PRK01318 membrane protein inse 100.0 1.8E-38 4E-43 331.5 17.3 159 2-192 351-510 (521)
8 PRK03449 putative inner membra 100.0 5.2E-38 1.1E-42 309.0 17.6 188 2-189 60-269 (304)
9 PRK01622 OxaA-like protein pre 100.0 5.8E-38 1.3E-42 302.1 17.2 154 2-190 92-251 (256)
10 COG0706 YidC Preprotein transl 100.0 7.1E-38 1.5E-42 309.2 16.1 159 2-191 138-298 (314)
11 PRK01315 putative inner membra 100.0 1.8E-37 3.9E-42 308.0 18.4 184 2-191 70-259 (329)
12 PRK02463 OxaA-like protein pre 100.0 2.2E-37 4.7E-42 305.1 17.4 153 2-190 92-251 (307)
13 PRK02201 putative inner membra 100.0 2E-36 4.4E-41 303.1 17.8 164 2-189 161-341 (357)
14 PRK02654 putative inner membra 100.0 4.1E-28 8.9E-33 239.9 16.5 196 2-206 55-354 (375)
15 KOG1239 Inner membrane protein 99.6 6.3E-15 1.4E-19 149.4 12.0 152 2-188 130-290 (372)
16 KOG1239 Inner membrane protein 98.6 5.7E-08 1.2E-12 99.1 7.2 180 3-188 64-246 (372)
17 COG1422 Predicted membrane pro 87.1 4.7 0.0001 38.6 9.3 59 2-64 73-143 (201)
18 PRK00247 putative inner membra 85.3 8.6 0.00019 40.7 11.1 31 175-205 262-292 (429)
19 PF05280 FlhC: Flagellar trans 72.0 6 0.00013 36.9 4.5 39 25-63 37-86 (175)
20 PRK12585 putative monovalent c 64.9 72 0.0016 30.6 10.1 21 44-64 5-25 (197)
21 PRK11281 hypothetical protein; 62.5 41 0.00089 39.8 9.7 32 46-77 581-613 (1113)
22 PRK13735 conjugal transfer mat 48.7 1.1E+02 0.0023 35.9 9.9 27 154-182 408-434 (942)
23 PF09958 DUF2192: Uncharacteri 40.1 26 0.00056 34.3 3.0 28 19-46 26-53 (231)
24 PRK01100 putative accessory ge 37.7 2.8E+02 0.0061 26.3 9.5 33 43-76 59-91 (210)
25 PF13150 DUF3989: Protein of u 34.4 48 0.001 27.6 3.3 18 164-181 37-54 (85)
26 PF12794 MscS_TM: Mechanosensi 31.2 5.8E+02 0.013 25.9 11.6 42 36-77 76-119 (340)
27 PF10332 DUF2418: Protein of u 30.8 96 0.0021 26.4 4.6 16 158-173 18-33 (99)
28 PF05190 MutS_IV: MutS family 27.3 94 0.002 24.4 3.8 36 6-41 2-37 (92)
29 PRK11103 PTS system mannose-sp 27.3 6.6E+02 0.014 25.3 12.9 44 12-63 49-92 (282)
30 PF06570 DUF1129: Protein of u 26.0 5.5E+02 0.012 24.0 15.8 21 44-64 80-100 (206)
31 KOG4819 Uncharacterized conser 25.1 1.3E+02 0.0029 25.9 4.5 32 235-266 33-64 (106)
32 PRK12722 transcriptional activ 22.6 1.5E+02 0.0032 28.3 4.7 38 25-62 37-85 (187)
33 TIGR02829 spore_III_AE stage I 22.3 9.3E+02 0.02 25.3 12.9 26 40-65 93-118 (381)
34 PRK12860 transcriptional activ 22.0 1.4E+02 0.003 28.5 4.4 38 25-62 37-85 (189)
35 PRK10929 putative mechanosensi 20.5 3.8E+02 0.0083 32.1 8.4 11 66-76 581-591 (1109)
36 PRK01642 cls cardiolipin synth 20.1 3E+02 0.0065 29.3 7.0 12 166-177 47-58 (483)
No 1
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.3e-40 Score=314.59 Aligned_cols=155 Identities=30% Similarity=0.644 Sum_probs=140.8
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 81 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~ 81 (391)
+|+.+|||+++||+||++|++++++|+++|||||||||++||+|+|+|+|||+|+|+++++++ ++.+++|+|++||+.
T Consensus 59 km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~ 136 (223)
T PRK00145 59 RMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAK 136 (223)
T ss_pred HHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccC
Confidence 789999999999999999999999999999999999999999999999999999999999996 477889999999998
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 016329 82 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFA 161 (391)
Q Consensus 82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f~ 161 (391)
+| ++++||+++++++|+++..+... ...+.++++.|+++||+++++++
T Consensus 137 ~D------------------------------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~ 184 (223)
T PRK00145 137 PD------------------------------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMS 184 (223)
T ss_pred cc------------------------------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHH
Confidence 87 57899999999999998876433 12233467788999999999999
Q ss_pred hhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329 162 LSVPSGLSLYWFTNNLLSTAQQVWLQKFG 190 (391)
Q Consensus 162 ~~~PaGL~LYWitSNlfsIiQq~iL~k~~ 190 (391)
+++|+||+|||++||+|+++|+++++++.
T Consensus 185 ~~~Pagl~lYW~~s~~~si~Q~~~l~~~~ 213 (223)
T PRK00145 185 WKFKSALVLYWVIGNLIQIIQTYFIKKLE 213 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999854
No 2
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=4.4e-40 Score=301.23 Aligned_cols=152 Identities=38% Similarity=0.786 Sum_probs=139.0
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 81 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~ 81 (391)
+|+++||||++||+||++|++++++|+++||||||+||++||+|+|+|+|||+++|+++|++. ++.++||+|++||+.
T Consensus 30 km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~~~--~l~~~~flW~~dL~~ 107 (181)
T TIGR03592 30 KMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSI--ELRHAPFLWIKDLSA 107 (181)
T ss_pred HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--HhccCCCcCccccCc
Confidence 789999999999999999999999999999999999999999999999999999999999986 478899999999988
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 016329 82 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFA 161 (391)
Q Consensus 82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f~ 161 (391)
+| ||++||+++++++|+++++..... ++.++++.|++++|+++++++
T Consensus 108 ~D------------------------------p~~iLPii~~~~~~~~~~~~~~~~---~~~~~~k~m~~~~p~~~~~~~ 154 (181)
T TIGR03592 108 PD------------------------------PYYILPILMGATMFLQQKLSPSGP---PDPAQQKIMMYIMPLMFLFFF 154 (181)
T ss_pred cc------------------------------HHHHHHHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHHHHHH
Confidence 77 689999999999999998854322 223467888899999999999
Q ss_pred hhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329 162 LSVPSGLSLYWFTNNLLSTAQQVWLQK 188 (391)
Q Consensus 162 ~~~PaGL~LYWitSNlfsIiQq~iL~k 188 (391)
.++|+|+.+||++||+|+++|++++++
T Consensus 155 ~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 155 LSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999874
No 3
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=3.7e-39 Score=310.35 Aligned_cols=152 Identities=30% Similarity=0.690 Sum_probs=135.3
Q ss_pred hhhhhchhHHHHHHHhhhC----HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 016329 2 AMRSLAPQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIP 77 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~D----qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~ 77 (391)
+|+++||||++||+||++| ++++++|+++|||||||||++||+|+|+|+|||||+|++|+++.+ +.+++|+|+
T Consensus 87 km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~- 163 (255)
T PRK02944 87 AMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF- 163 (255)
T ss_pred HHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-
Confidence 7999999999999999864 577899999999999999999999999999999999999999864 678899999
Q ss_pred CCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHH
Q 016329 78 SLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMI 157 (391)
Q Consensus 78 dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmi 157 (391)
||+.+| |+++||+++++++|++.+....... .+..+++.|+++||+|+
T Consensus 164 dLs~~D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~ 211 (255)
T PRK02944 164 DLGQAD------------------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMI 211 (255)
T ss_pred ccCcch------------------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHH
Confidence 888776 6899999999999999887533221 12246788999999999
Q ss_pred HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329 158 GYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 188 (391)
Q Consensus 158 i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k 188 (391)
++|++++|+||.+||++||+|+++|+++++.
T Consensus 212 ~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~ 242 (255)
T PRK02944 212 LIFAINFPAALSLYWVVGNIFMIAQTYLIKG 242 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999887
No 4
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.2e-39 Score=344.70 Aligned_cols=171 Identities=30% Similarity=0.612 Sum_probs=142.5
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc--cccCC
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF--WIPSL 79 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl--Wi~dL 79 (391)
||+.|||+|++||+||++|++++|+|||+|||+|||||++||||+||||||||+||++|+++.. +...+|+ |++||
T Consensus 604 KMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DL 681 (795)
T PRK01001 604 RMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNL 681 (795)
T ss_pred HHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhc
Confidence 7999999999999999999999999999999999999999999999999999999999998763 5567887 99999
Q ss_pred cCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHH
Q 016329 80 AGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQ--NNDPNMKSSQALTNFLPLMI 157 (391)
Q Consensus 80 s~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q--~~dp~~k~~k~mm~~mPlmi 157 (391)
+.||++ +.|.++.. -+| + ++.||||++++++|++++++.... ...+++.+++.|+++||+|+
T Consensus 682 SapDpl--------f~~~~~i~----FiG--d--~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf 745 (795)
T PRK01001 682 TAPDVL--------FSWETPIW----FIG--N--EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLF 745 (795)
T ss_pred cCCCcc--------cccccccc----ccc--c--chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHH
Confidence 999853 12222110 011 2 568999999999999998864321 11223345667888999999
Q ss_pred HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329 158 GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 190 (391)
Q Consensus 158 i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~ 190 (391)
++|++++|+||+|||++||+|+++||+++++.+
T Consensus 746 ~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~ 778 (795)
T PRK01001 746 TFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKIL 778 (795)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999964
No 5
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=1.6e-38 Score=324.11 Aligned_cols=204 Identities=24% Similarity=0.367 Sum_probs=148.7
Q ss_pred hhhhhchhHHHHHHHhhhC-----HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh--hcccccccc
Q 016329 2 AMRSLAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFF 74 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~D-----qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~--~gl~~~gFl 74 (391)
+|+.|||+|++||+||+++ ++++++|+++|||+|||||++||||+|||+|||||||++|++|+. +|+....+.
T Consensus 60 km~~lqPel~~iq~kyk~~~d~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~ 139 (429)
T PRK00247 60 TAAHIRPKRKALREEYKGKTDEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQ 139 (429)
T ss_pred HHHHcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 6889999999999999865 456899999999999999999999999999999999999999985 466554455
Q ss_pred cccCCcCchh---HhhhhcCCCccccccccC-CCCC--CCCchhhHHHHHHHHHHHH--HHHHHHHhhccC--C---CCc
Q 016329 75 WIPSLAGPTT---IAARQNGSGISWLFPFVD-GHPP--LGWSDTFAYLVLPVLLVVS--QYISVKIIQSSQ--N---NDP 141 (391)
Q Consensus 75 Wi~dLs~pd~---i~a~~~g~~is~l~p~~~-g~~~--Lg~~d~l~~lILPVL~~~s--~~ls~~i~~~~q--~---~dp 141 (391)
|+.-|+.++- +.++.+|.+++..+-+.. +..- .+.+| +.+++||++++++ +++++.++...+ . ..+
T Consensus 140 ~ig~l~~~~v~sfl~a~~fGvpL~~~~sm~~e~~~~~~~~~~~-v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~ 218 (429)
T PRK00247 140 PIGFLTSEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQAT-VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSG 218 (429)
T ss_pred ccccCCHHHHHHHHhccccCCCcccccccchhhhhhccCCccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccch
Confidence 5555555442 234566766653321110 0000 12233 3468888665554 556666543321 1 112
Q ss_pred ----ccHHHHHHHHHHHHHHHHHHhh--hhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Q 016329 142 ----NMKSSQALTNFLPLMIGYFALS--VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDE 206 (391)
Q Consensus 142 ----~~k~~k~mm~~mPlmii~f~~~--~PaGL~LYWitSNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~~ 206 (391)
+.++|..|++++|+|+++++++ +|+||+|||++||+|+++||++++.++..++|+.+..+.+..+
T Consensus 219 ~~~~~~k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~~ 289 (429)
T PRK00247 219 FAVGMLKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAE 289 (429)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 2233555667899999988876 7999999999999999999999999999999999988876554
No 6
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=9.7e-39 Score=293.73 Aligned_cols=164 Identities=38% Similarity=0.735 Sum_probs=147.3
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh-hcccccccccccCCc
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD-EGLLTEGFFWIPSLA 80 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~-~gl~~~gFlWi~dLs 80 (391)
+|++++|++++||+||++|++++++|+++|||||||||++||+|+|+|+||||++|++||+++. +|+.++||+|++||+
T Consensus 31 k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~~~~~~~~~~g~lw~~dL~ 110 (198)
T PF02096_consen 31 KMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRMAEVPSLATGGFLWFPDLT 110 (198)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeChHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999986 677889999999999
Q ss_pred CchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHH
Q 016329 81 GPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS--SQNNDPNMKSSQALTNFLPLMIG 158 (391)
Q Consensus 81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~--~q~~dp~~k~~k~mm~~mPlmii 158 (391)
.||.. ..+|+++||+++++++++++++..+ .....+....++.|++++|++++
T Consensus 111 ~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~ 165 (198)
T PF02096_consen 111 APDPT-------------------------MGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMKIMLYIMPLMFL 165 (198)
T ss_pred CCCcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHHHHHHHHHHHHH
Confidence 99831 1248899999999999999998653 22233445678889999999999
Q ss_pred HHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329 159 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 190 (391)
Q Consensus 159 ~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~ 190 (391)
++++.+|+|+.+||++||+|+++|++++++.+
T Consensus 166 ~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 166 FFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999864
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=1.8e-38 Score=331.48 Aligned_cols=159 Identities=34% Similarity=0.698 Sum_probs=137.8
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccCCc
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLA 80 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl-Wi~dLs 80 (391)
||+.+||+|++||+||++|++++++|||+|||+|||||++||||+|+||||||++|++|++... +...+|+ ||+||+
T Consensus 351 km~~lqP~~~~i~~kyk~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs 428 (521)
T PRK01318 351 KMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLS 428 (521)
T ss_pred HHHHhhHHHHHHHHHhHhhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeecccc
Confidence 7999999999999999999999999999999999999999999999999999999999999874 6677887 999999
Q ss_pred CchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH
Q 016329 81 GPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYF 160 (391)
Q Consensus 81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f 160 (391)
.||+. ..+...+||+++++++|++++++... .+| +++.+|.+||+++++|
T Consensus 429 ~~Dp~-------------------------~il~~~~lPil~~~~~~~~~~l~~~~--~~~---~q~kim~~mpi~~~~~ 478 (521)
T PRK01318 429 APDPY-------------------------FILHIGLLPILMGITMFLQQKLNPTP--TDP---MQAKIMKFMPLIFTFF 478 (521)
T ss_pred ccccc-------------------------hhHHHHHHHHHHHHHHHHHHHhcCCC--CCH---HHHHHHHHHHHHHHHH
Confidence 98820 00123455999999999999886432 233 4556677799999999
Q ss_pred HhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCC
Q 016329 161 ALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA 192 (391)
Q Consensus 161 ~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~~ 192 (391)
++++|+||.|||++||+|+++|++++++.+..
T Consensus 479 ~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 479 FLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999996543
No 8
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.2e-38 Score=309.04 Aligned_cols=188 Identities=27% Similarity=0.452 Sum_probs=134.2
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhh--cccc-----cccc
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADE--GLLT-----EGFF 74 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~--gl~~-----~gFl 74 (391)
+|+++||++++||+||++|++++++|+++|||+|||||++||+|+|||+|||||+|++||+++.. |+.. +.+.
T Consensus 60 km~~lqP~l~~iq~kyk~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~ 139 (304)
T PRK03449 60 KMQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENR 139 (304)
T ss_pred HHHHccHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999998642 2111 0000
Q ss_pred cccC--CcCc---hhHhhhhcCCCccccccc----cCCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHhhccCC----CC
Q 016329 75 WIPS--LAGP---TTIAARQNGSGISWLFPF----VDGHPPLGWSDT-FAYLVLPVLLVVSQYISVKIIQSSQN----ND 140 (391)
Q Consensus 75 Wi~d--Ls~p---d~i~a~~~g~~is~l~p~----~~g~~~Lg~~d~-l~~lILPVL~~~s~~ls~~i~~~~q~----~d 140 (391)
+.+. +... .-+.+.++|.+++..++. ++....++..|. +..+++|+++++++|++++++...+. .+
T Consensus 140 ~~~~~~~~~~~~~sFl~~~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~ 219 (304)
T PRK03449 140 NTPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAAN 219 (304)
T ss_pred ccccccccHHHHHHHhhhhhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 1000 0000 001233445554321110 001001222232 24567889999999999887643221 23
Q ss_pred cccH-HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHh
Q 016329 141 PNMK-SSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 189 (391)
Q Consensus 141 p~~k-~~k~mm~~mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~ 189 (391)
+++. +++.|+++||+|+++|++++|+||.|||++||+|+++||+++++.
T Consensus 220 ~~~~~m~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~ 269 (304)
T PRK03449 220 PQTAMMNKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGK 269 (304)
T ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 457889999999999999999999999999999999999999874
No 9
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=5.8e-38 Score=302.15 Aligned_cols=154 Identities=30% Similarity=0.575 Sum_probs=133.5
Q ss_pred hhhhhchhHHHHHHHhhh--CH---HHHHHHHHHHHHHhCCCCCc-ChhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 016329 2 AMRSLAPQVKAIQERYAG--DQ---ERIQLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 75 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~--Dq---ek~qqEm~kLYKk~GVNPla-GCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlW 75 (391)
||+++||++++||+||++ |+ +++++|+++|||||||||++ ||+|+|+|+|||||+|++||++. ++.++||+|
T Consensus 92 km~~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW 169 (256)
T PRK01622 92 KMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLW 169 (256)
T ss_pred HHHHhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCcee
Confidence 688999999999999986 43 35789999999999999999 99999999999999999999986 477899999
Q ss_pred ccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH
Q 016329 76 IPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPL 155 (391)
Q Consensus 76 i~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPl 155 (391)
+ ||+.+| +|||+++++++++++++++.......+.++++.|+++||+
T Consensus 170 ~-dLs~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi 216 (256)
T PRK01622 170 F-NLGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPA 216 (256)
T ss_pred e-CCcchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 9 776543 6899999999999988765322222233467888999999
Q ss_pred HHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329 156 MIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 190 (391)
Q Consensus 156 mii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~ 190 (391)
+++++++++|+||++||++||+|+++|++++++.+
T Consensus 217 ~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~ 251 (256)
T PRK01622 217 MILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVM 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999965
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.1e-38 Score=309.17 Aligned_cols=159 Identities=36% Similarity=0.686 Sum_probs=140.0
Q ss_pred hhhhhchhHHHHHHHhh-hCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccCC
Q 016329 2 AMRSLAPQVKAIQERYA-GDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSL 79 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk-~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl-Wi~dL 79 (391)
+|+.+||+|++||+||+ +|++++|+|+++|||||||||++||+|+|+|+||||++|+++++... +...+|+ |+.|+
T Consensus 138 km~~lqP~~~~i~~kyk~~~~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl 215 (314)
T COG0706 138 KMQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDL 215 (314)
T ss_pred HHHHhChhHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcc
Confidence 79999999999999999 99999999999999999999999999999999999999999999874 5566676 99888
Q ss_pred cCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHH
Q 016329 80 AGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGY 159 (391)
Q Consensus 80 s~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~ 159 (391)
+.+|+ + ..+++|+++++++|++++++..... +++.++++.|+++||+++.+
T Consensus 216 ~~~dp--------------------------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~ 266 (314)
T COG0706 216 SLPDP--------------------------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTF 266 (314)
T ss_pred cCCCC--------------------------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHH
Confidence 87762 1 2247799999999999998765332 33445888999999999999
Q ss_pred HHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcC
Q 016329 160 FALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG 191 (391)
Q Consensus 160 f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~ 191 (391)
+++++|+||.|||++||+|+++||+++++.+.
T Consensus 267 ~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~ 298 (314)
T COG0706 267 FFFNFPAGLVLYWIVSNLFSILQQYILNKPLE 298 (314)
T ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999643
No 11
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.8e-37 Score=307.96 Aligned_cols=184 Identities=30% Similarity=0.521 Sum_probs=136.1
Q ss_pred hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329 2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG 81 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~ 81 (391)
+|+++||||++||+||++|++++++|+++|||+|||||++||||+|+|+||||++|++|++++..+ ....+|.+++..
T Consensus 70 km~~lqPe~~~iq~kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~ 147 (329)
T PRK01315 70 NMQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLE 147 (329)
T ss_pred HHHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHH
Confidence 799999999999999999999999999999999999999999999999999999999999876421 112233333321
Q ss_pred chhHhhhhcCCCccccccccCCCCCCCCch-hhHHHHHHHHHHHHHHHHHHHh-hcc----CCCCcccHHHHHHHHHHHH
Q 016329 82 PTTIAARQNGSGISWLFPFVDGHPPLGWSD-TFAYLVLPVLLVVSQYISVKII-QSS----QNNDPNMKSSQALTNFLPL 155 (391)
Q Consensus 82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d-~l~~lILPVL~~~s~~ls~~i~-~~~----q~~dp~~k~~k~mm~~mPl 155 (391)
+. ..+..+|.+++.. |... ...|..+ .+.+++||+++++++|++++.+ .+. ...++..++++.|+++||+
T Consensus 148 s~-~~~~~fg~~L~~~--f~~~-~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPi 223 (329)
T PRK01315 148 SF-RHAHIFGAPLAAT--FLQA-LNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPL 223 (329)
T ss_pred hh-hcccccccccccc--cccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHH
Confidence 11 0111223322211 1000 0012222 2456899999999999987543 211 1234555678889999999
Q ss_pred HHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcC
Q 016329 156 MIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG 191 (391)
Q Consensus 156 mii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~ 191 (391)
|+++|++++|+||+|||++||+|+++|++++.+.++
T Consensus 224 m~~~~~~~fPaGL~LYW~~snl~si~Qq~~v~r~~p 259 (329)
T PRK01315 224 MFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRNNP 259 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999888654
No 12
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=2.2e-37 Score=305.14 Aligned_cols=153 Identities=28% Similarity=0.471 Sum_probs=132.2
Q ss_pred hhhhhchhHHHHHHHhhhC-----HHHHHHHHHHHHHHhCCCCCc--ChhHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 016329 2 AMRSLAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFF 74 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~D-----qek~qqEm~kLYKk~GVNPla--GCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl 74 (391)
||+.+||||++||+||+++ ++++++|+++|||||||||++ ||||+|||+|||||+|+++++.. ++.+++|+
T Consensus 92 KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~~--~l~~~~fl 169 (307)
T PRK02463 92 KMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYTK--GVSTSTFL 169 (307)
T ss_pred HHHHhChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcch--hhccCCee
Confidence 7899999999999999863 345689999999999999998 89999999999999999999764 68889999
Q ss_pred cccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHH
Q 016329 75 WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLP 154 (391)
Q Consensus 75 Wi~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mP 154 (391)
|+ ||+.|| ++||+++++++++++.++....+ +.+.++|+.|+++||
T Consensus 170 wi-dL~~p~--------------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~P 215 (307)
T PRK02463 170 GI-DLGSPS--------------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMP 215 (307)
T ss_pred ee-ecCchh--------------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHH
Confidence 99 776543 68899999999988877543322 223456888999999
Q ss_pred HHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329 155 LMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 190 (391)
Q Consensus 155 lmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~ 190 (391)
+|+++|++++|+||+|||++||+|+++|++++++++
T Consensus 216 im~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~ 251 (307)
T PRK02463 216 IMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999865
No 13
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2e-36 Score=303.07 Aligned_cols=164 Identities=20% Similarity=0.427 Sum_probs=133.4
Q ss_pred hhhhhchhHHHHHHHhhhC------HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 016329 2 AMRSLAPQVKAIQERYAGD------QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW 75 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~D------qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlW 75 (391)
+|+++||||++||+||++| ++++++|+++|||||||||++||||+|||+|||||+|++|+.+.+ +....|+|
T Consensus 161 km~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flg 238 (357)
T PRK02201 161 KQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLG 238 (357)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCcc
Confidence 7999999999999999876 778999999999999999999999999999999999999999864 66789999
Q ss_pred ccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhh----ccC-----CC--CcccH
Q 016329 76 IPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ----SSQ-----NN--DPNMK 144 (391)
Q Consensus 76 i~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~----~~q-----~~--dp~~k 144 (391)
+ ||+.+|.. .+ +.+.++++++++++++++++++.+++ +.. .. .++++
T Consensus 239 i-dLs~~~~~----------~~-----------~~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k 296 (357)
T PRK02201 239 I-DLSATSWQ----------EI-----------FAGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALK 296 (357)
T ss_pred c-ccCCCChh----------hh-----------ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHH
Confidence 9 88876521 00 01223566777777777777765532 111 11 12234
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHh
Q 016329 145 SSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 189 (391)
Q Consensus 145 ~~k~mm~~mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~ 189 (391)
.|+.|+.+||+++++|++++|+||.|||++||+|+++||++++++
T Consensus 297 ~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 297 KQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999984
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.96 E-value=4.1e-28 Score=239.93 Aligned_cols=196 Identities=31% Similarity=0.517 Sum_probs=129.6
Q ss_pred hhhhhchhHH----HHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh------------
Q 016329 2 AMRSLAPQVK----AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD------------ 65 (391)
Q Consensus 2 kMq~lQPem~----kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~------------ 65 (391)
+|+.+||+|+ +||+||++|++++++||++|||||| ||++||||+|||+||||+||++||...-
T Consensus 55 KM~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~ 133 (375)
T PRK02654 55 RMKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVL 133 (375)
T ss_pred HHHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccC
Confidence 7999999985 7999999999999999999999999 9999999999999999999999998421
Q ss_pred --h--------ccc--------cc--ccccccCCcC-----------------------------------ch-------
Q 016329 66 --E--------GLL--------TE--GFFWIPSLAG-----------------------------------PT------- 83 (391)
Q Consensus 66 --~--------gl~--------~~--gFlWi~dLs~-----------------------------------pd------- 83 (391)
+ .+. ++ +|--+..|.. |.
T Consensus 134 p~~qi~~v~~~~~~~~~~~i~~~~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~ 213 (375)
T PRK02654 134 PSEQIAAVQPQPFKSKPQNIFITDGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGE 213 (375)
T ss_pred CHHHHhhhcCCCcCCCCceEEEecCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCc
Confidence 0 000 00 1100000000 00
Q ss_pred -------------------hHhhhhcCCCccccccccCCCCCCCCc--h---hhHHHHHHHHHHHHHHHHHHHhhccCCC
Q 016329 84 -------------------TIAARQNGSGISWLFPFVDGHPPLGWS--D---TFAYLVLPVLLVVSQYISVKIIQSSQNN 139 (391)
Q Consensus 84 -------------------~i~a~~~g~~is~l~p~~~g~~~Lg~~--d---~l~~lILPVL~~~s~~ls~~i~~~~q~~ 139 (391)
++.+.+.|..-.-.|-|....+..|.. | .|-++++-+..+++.|+|..++......
T Consensus 214 ~~~~~~~~g~~~al~pgd~ti~~~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~ 293 (375)
T PRK02654 214 ERVKVSEDGTIEALAPGDATIQGTIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPA 293 (375)
T ss_pred eeEEECCCCcEEEecCCceEEEEeecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCC
Confidence 000000110000000010000112221 1 1345666677788899988776443333
Q ss_pred CcccHHHHHHHHHHHHHH--HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Q 016329 140 DPNMKSSQALTNFLPLMI--GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDE 206 (391)
Q Consensus 140 dp~~k~~k~mm~~mPlmi--i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~~ 206 (391)
+| +++.+..+.|+|| +|+++.+|+|+++||++.|+|..+|+++|.+ .|+.+-..++..+
T Consensus 294 ~~---qq~t~nkitpv~~sgmflffplpagvllym~ianifq~~qt~~l~r-----eplpenlqk~~~~ 354 (375)
T PRK02654 294 NP---QQSTANKITPVMFSGMFLFFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENLQKILDE 354 (375)
T ss_pred Ch---hHHHHHhhhhHHHhhhHhcccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHHHHHHHH
Confidence 43 5678888999987 4666789999999999999999999999997 7888766666554
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.3e-15 Score=149.40 Aligned_cols=152 Identities=20% Similarity=0.406 Sum_probs=125.3
Q ss_pred hhhhhchhHHHHHHHhhh------CHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh--hccccccc
Q 016329 2 AMRSLAPQVKAIQERYAG------DQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGF 73 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk~------Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~--~gl~~~gF 73 (391)
++..+.|+|..+.++.+. .....+++++.+|++|||+| ....-+++|.|+|++.|.+||.|+. +++.+.|+
T Consensus 130 kls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~ 208 (372)
T KOG1239|consen 130 KLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGL 208 (372)
T ss_pred HHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhH
Confidence 567799999999999863 12345779999999999999 9888888999999999999999985 35667799
Q ss_pred ccccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcc-CCCCcccHHHHHHHHH
Q 016329 74 FWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSS-QNNDPNMKSSQALTNF 152 (391)
Q Consensus 74 lWi~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~-q~~dp~~k~~k~mm~~ 152 (391)
+|++||+.+| +++++|++..++++..++..... .........++.+..+
T Consensus 209 ~wf~dLt~~d------------------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (372)
T KOG1239|consen 209 LWFPDLTGPD------------------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRI 258 (372)
T ss_pred HhcccccccC------------------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHH
Confidence 9999998887 67999999998888877663211 1112334467888999
Q ss_pred HHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329 153 LPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 188 (391)
Q Consensus 153 mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k 188 (391)
+|++++.++.++|.++++||+ |+++|..+++.
T Consensus 259 ~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~ 290 (372)
T KOG1239|consen 259 LPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS 290 (372)
T ss_pred hhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence 999999999999999999999 99999999776
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=5.7e-08 Score=99.06 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=154.5
Q ss_pred hhhhchhHHHHHHHhhhCHH--HHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCc
Q 016329 3 MRSLAPQVKAIQERYAGDQE--RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLA 80 (391)
Q Consensus 3 Mq~lQPem~kIqeKYk~Dqe--k~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs 80 (391)
|..++|-...+...+...+. .+|-++..+|+-.|++++++|++..+-||.+++.|.+.+. ...+....+++|++.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~ 142 (372)
T KOG1239|consen 64 VATVSPIIEGILLALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLG 142 (372)
T ss_pred HHhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHH
Confidence 56678888888888887765 8899999999999999999999999999999999999987 54566778999999999
Q ss_pred CchhHhhhhcCCCccccccccCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHH
Q 016329 81 GPTTIAARQNGSGISWLFPFVDGHPPLGWS-DTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGY 159 (391)
Q Consensus 81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~-d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~ 159 (391)
.....++..++..++|..++...+.+.|+. +.+++.+++..+.++.|+..+.|.-.+... +.....++|-+..+
T Consensus 143 ~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f-----~t~g~~wf~dLt~~ 217 (372)
T KOG1239|consen 143 EELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSF-----TTGGLLWFPDLTGP 217 (372)
T ss_pred HHHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhcccccc-----chhhHHhccccccc
Confidence 888788888888899998888888888988 888888999999999999999987433322 22377788989898
Q ss_pred HHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329 160 FALSVPSGLSLYWFTNNLLSTAQQVWLQK 188 (391)
Q Consensus 160 f~~~~PaGL~LYWitSNlfsIiQq~iL~k 188 (391)
..+..+.++..||+++++..-.|+.....
T Consensus 218 dp~~ilp~it~~~~~~~~~~~~~~~~~~~ 246 (372)
T KOG1239|consen 218 DPLYILPGITLATLTLFIELGAETGLSSS 246 (372)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 89999999999999999999999988873
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=87.10 E-value=4.7 Score=38.56 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=36.2
Q ss_pred hhhhhchhHHHHHHHhh-----hCH---HHH---HHHHHHHHHHhCCCCCc-ChhHHHHHHHHHHHHHHHHHhhh
Q 016329 2 AMRSLAPQVKAIQERYA-----GDQ---ERI---QLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVA 64 (391)
Q Consensus 2 kMq~lQPem~kIqeKYk-----~Dq---ek~---qqEm~kLYKk~GVNPla-GCLPmLIQIPIFigLY~vLr~~a 64 (391)
+|+++|-++++.|++++ +|. +|+ |.|++....+- ++ .+-||+.++++.|-.|-=++...
T Consensus 73 km~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el----mk~qfkPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL----MKMQFKPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999885 342 233 33444444332 11 45577766666666665555554
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=85.25 E-value=8.6 Score=40.69 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcccchhhhhh
Q 016329 175 NNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD 205 (391)
Q Consensus 175 SNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~ 205 (391)
+-+-+++..++++++|....++...-..-.+
T Consensus 262 tl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~ 292 (429)
T PRK00247 262 TLIQNIIMYLILERKYPLTDEFKEHHAEQRA 292 (429)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 3345556679999999988888876555444
No 19
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=71.98 E-value=6 Score=36.95 Aligned_cols=39 Identities=33% Similarity=0.558 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-hCCCCCcChhHHH----------HHHHHHHHHHHHHHhh
Q 016329 25 QLETARLYKL-AGINPLAGCLPTL----------ATIPVWIGLYRALSNV 63 (391)
Q Consensus 25 qqEm~kLYKk-~GVNPlaGCLPmL----------IQIPIFigLY~vLr~~ 63 (391)
...+.+|||+ +|++|-+|.||.- |+--+|+.+|+.+...
T Consensus 37 ~~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~ 86 (175)
T PF05280_consen 37 RERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKN 86 (175)
T ss_dssp HHHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhc
Confidence 4567899999 8999999999853 6777788888877653
No 20
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=64.89 E-value=72 Score=30.57 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 016329 44 LPTLATIPVWIGLYRALSNVA 64 (391)
Q Consensus 44 LPmLIQIPIFigLY~vLr~~a 64 (391)
+-.++-+-+++|+++.+-...
T Consensus 5 ~eiI~~vLLliG~~f~ligaI 25 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAI 25 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777665443
No 21
>PRK11281 hypothetical protein; Provisional
Probab=62.54 E-value=41 Score=39.82 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hccccccccccc
Q 016329 46 TLATIPVWIGLYRALSNVAD-EGLLTEGFFWIP 77 (391)
Q Consensus 46 mLIQIPIFigLY~vLr~~a~-~gl~~~gFlWi~ 77 (391)
.+.++++++.+|..++.++. .|+...+|-|=+
T Consensus 581 ~~~~~~~~w~~~~~~~~~~~~~Gl~~~HF~w~~ 613 (1113)
T PRK11281 581 WSLKLALFWLVFATCYRVLRPNGVAERHFGMPK 613 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeHHhcCCCH
Confidence 34566777777767777765 477777888843
No 22
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=48.72 E-value=1.1e+02 Score=35.87 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhHhHHHHHHhhHHHHHH
Q 016329 154 PLMIGYFALSVPSGLSLYWFTNNLLSTAQ 182 (391)
Q Consensus 154 Plmii~f~~~~PaGL~LYWitSNlfsIiQ 182 (391)
..+.+|+++.+| ++-||++...-..+-
T Consensus 408 a~~aGyL~msIP--~LA~~ivkG~~~~~s 434 (942)
T PRK13735 408 ASTAGYLSMMIP--PLSWGMVKGLGAGFS 434 (942)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 445566666666 556666655444333
No 23
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=40.10 E-value=26 Score=34.31 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.2
Q ss_pred hCHHHHHHHHHHHHHHhCCCCCcChhHH
Q 016329 19 GDQERIQLETARLYKLAGINPLAGCLPT 46 (391)
Q Consensus 19 ~Dqek~qqEm~kLYKk~GVNPlaGCLPm 46 (391)
-|+.++-..+++.|+++||.|+.|.-|.
T Consensus 26 ~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 26 LDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 3788889999999999999999998874
No 24
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=37.74 E-value=2.8e+02 Score=26.31 Aligned_cols=33 Identities=12% Similarity=-0.129 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 016329 43 CLPTLATIPVWIGLYRALSNVADEGLLTEGFFWI 76 (391)
Q Consensus 43 CLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi 76 (391)
++..+....+|+..|..+|..+. |.+..+++..
T Consensus 59 i~g~~~~tli~~l~f~~lR~~aG-G~Ha~s~~~C 91 (210)
T PRK01100 59 VTGLLLQTVTVHLSFLWLRRYSF-GLHATNSINC 91 (210)
T ss_pred HHChHHHHHHHHHHHHHHHhccC-ceecCCCcHH
Confidence 44445566777788888888874 7766666544
No 25
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=34.38 E-value=48 Score=27.57 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.2
Q ss_pred hhhHhHHHHHHhhHHHHH
Q 016329 164 VPSGLSLYWFTNNLLSTA 181 (391)
Q Consensus 164 ~PaGL~LYWitSNlfsIi 181 (391)
+=+++++|+++++++.++
T Consensus 37 ~fa~l~ly~~~~ai~~~G 54 (85)
T PF13150_consen 37 LFAALCLYMTVSAIYDIG 54 (85)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 446899999999999884
No 26
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=31.22 E-value=5.8e+02 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=30.1
Q ss_pred CCCCCc-ChhHHHHHHHHHHHHHHHHHhhhh-hccccccccccc
Q 016329 36 GINPLA-GCLPTLATIPVWIGLYRALSNVAD-EGLLTEGFFWIP 77 (391)
Q Consensus 36 GVNPla-GCLPmLIQIPIFigLY~vLr~~a~-~gl~~~gFlWi~ 77 (391)
..+|+. ..-..+.++.++..+|..++.++. .|+...+|-|=+
T Consensus 76 ~~~~~~~~l~~~l~~~a~~~~~~~~~~~l~rp~Gl~~~HF~w~~ 119 (340)
T PF12794_consen 76 WSSPFSVALGAALLAMALFWLVFEFFRRLLRPNGLAERHFGWPK 119 (340)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCCCH
Confidence 345654 344556688888888888888886 488888998843
No 27
>PF10332 DUF2418: Protein of unknown function (DUF2418); InterPro: IPR018819 This entry represents the conserved 100 residue central region from a family of proteins found in fungi. It carries a characteristic EYD sequence motif. The function is not known.
Probab=30.81 E-value=96 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=8.2
Q ss_pred HHHHhhhhhHhHHHHH
Q 016329 158 GYFALSVPSGLSLYWF 173 (391)
Q Consensus 158 i~f~~~~PaGL~LYWi 173 (391)
-+|+++.|..+++||+
T Consensus 18 ~LF~~FSP~hvl~~~~ 33 (99)
T PF10332_consen 18 RLFCLFSPIHVLIYYL 33 (99)
T ss_pred HHHHHcChHHHHHHHH
Confidence 3344455555555555
No 28
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=27.32 E-value=94 Score=24.38 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=29.9
Q ss_pred hchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCc
Q 016329 6 LAPQVKAIQERYAGDQERIQLETARLYKLAGINPLA 41 (391)
Q Consensus 6 lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPla 41 (391)
+-|+++++++.|.+-.+.++....++-+++|++++.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999988888999999999999986554
No 29
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=27.25 E-value=6.6e+02 Score=25.32 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=28.9
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhh
Q 016329 12 AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNV 63 (391)
Q Consensus 12 kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~ 63 (391)
.|++=|++|++++++.+++=..=+|.+|.- .|+.+|+--++..-
T Consensus 49 ~LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~--------~~~I~Gi~~amEE~ 92 (282)
T PRK11103 49 AIRRLYPENNEARKQAIKRHLEFFNTHPYV--------AAPILGVTLAMEEQ 92 (282)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHHHH
Confidence 345557788877777777766668888852 34556776666543
No 30
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.99 E-value=5.5e+02 Score=23.99 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 016329 44 LPTLATIPVWIGLYRALSNVA 64 (391)
Q Consensus 44 LPmLIQIPIFigLY~vLr~~a 64 (391)
+..+-..-+|+++|..+..+.
T Consensus 80 ~~~ld~~L~~~~if~~~~gi~ 100 (206)
T PF06570_consen 80 LMALDNSLLFFGIFSLLFGIM 100 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334456666666665554
No 31
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.11 E-value=1.3e+02 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016329 235 PRPGEKFKQIREQEARRRQQREEEKRKAAEAA 266 (391)
Q Consensus 235 ~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (391)
-.|.....+++|.+|.++++||+.+.+..|+.
T Consensus 33 qk~~~~~~~~qeK~a~k~~Ere~~r~~R~e~~ 64 (106)
T KOG4819|consen 33 NKPEIRNMKRQEKAAQKAAEREKVRADRDEQV 64 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 36778899999999999999998766666653
No 32
>PRK12722 transcriptional activator FlhC; Provisional
Probab=22.61 E-value=1.5e+02 Score=28.26 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHHHHHHHh-CCCCCcChhHH----------HHHHHHHHHHHHHHHh
Q 016329 25 QLETARLYKLA-GINPLAGCLPT----------LATIPVWIGLYRALSN 62 (391)
Q Consensus 25 qqEm~kLYKk~-GVNPlaGCLPm----------LIQIPIFigLY~vLr~ 62 (391)
...+.+|||+- |++|=.|.||. =|+--+|+.+|+.+..
T Consensus 37 ~~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 37 RERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 35678899987 99999999993 2556666666666654
No 33
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=22.32 E-value=9.3e+02 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=17.4
Q ss_pred CcChhHHHHHHHHHHHHHHHHHhhhh
Q 016329 40 LAGCLPTLATIPVWIGLYRALSNVAD 65 (391)
Q Consensus 40 laGCLPmLIQIPIFigLY~vLr~~a~ 65 (391)
+.....+|+|+-++..+..++.++.+
T Consensus 93 v~~~~~lL~~il~laii~Avl~nl~~ 118 (381)
T TIGR02829 93 LLSNGKLLGTLIILAIICALLQNLQN 118 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776666677777654
No 34
>PRK12860 transcriptional activator FlhC; Provisional
Probab=21.95 E-value=1.4e+02 Score=28.51 Aligned_cols=38 Identities=34% Similarity=0.535 Sum_probs=29.3
Q ss_pred HHHHHHHHHHh-CCCCCcChhHH----------HHHHHHHHHHHHHHHh
Q 016329 25 QLETARLYKLA-GINPLAGCLPT----------LATIPVWIGLYRALSN 62 (391)
Q Consensus 25 qqEm~kLYKk~-GVNPlaGCLPm----------LIQIPIFigLY~vLr~ 62 (391)
...+.+|||+- |++|-.|.||. =|+--+|+.+|+.+..
T Consensus 37 ~~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 37 RDRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 45788999987 99999999995 1666677777777654
No 35
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.52 E-value=3.8e+02 Score=32.08 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=7.1
Q ss_pred hcccccccccc
Q 016329 66 EGLLTEGFFWI 76 (391)
Q Consensus 66 ~gl~~~gFlWi 76 (391)
.|+...+|-|=
T Consensus 581 ~Gl~~~HF~w~ 591 (1109)
T PRK10929 581 NGLFIAHFGWP 591 (1109)
T ss_pred CCeeHHhcCCC
Confidence 46666677773
No 36
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=20.15 E-value=3e+02 Score=29.27 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.0
Q ss_pred hHhHHHHHHhhH
Q 016329 166 SGLSLYWFTNNL 177 (391)
Q Consensus 166 aGL~LYWitSNl 177 (391)
.|+.+||++..-
T Consensus 47 ~G~~lY~~fG~~ 58 (483)
T PRK01642 47 VGIIAYLLFGEL 58 (483)
T ss_pred HHHHHHHhcCCC
Confidence 588889987653
Done!