Query 016329
Match_columns 391
No_of_seqs 171 out of 1091
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e91_A Paired amphipathic heli 13.2 2.1E+02 0.007 22.4 4.1 31 9-39 13-45 (85)
2 2avu_E Flagellar transcription 11.6 2.7E+02 0.0091 25.3 4.9 38 26-63 38-86 (192)
3 4ea3_A Fusion protein of nocic 11.1 7.7E+02 0.026 23.0 8.3 15 116-130 298-312 (434)
4 2cr7_A Paired amphipathic heli 10.9 2.2E+02 0.0076 21.9 3.6 30 9-38 16-47 (80)
5 1g1e_B SIN3A; four-helix bundl 10.5 2.5E+02 0.0087 22.1 3.9 28 9-36 16-45 (89)
6 2czy_A Paired amphipathic heli 9.5 2.9E+02 0.01 21.0 3.8 31 8-38 9-41 (77)
7 2f05_A Paired amphipathic heli 8.6 2.9E+02 0.01 22.5 3.6 31 9-39 13-45 (105)
8 1v54_D Cytochrome C oxidase su 8.2 1.6E+02 0.0054 25.8 1.9 30 5-34 32-62 (147)
9 2dod_A Transcription elongatio 7.8 3.6E+02 0.012 21.0 3.7 28 21-48 16-46 (82)
10 3rze_A Histamine H1 receptor, 7.8 1E+03 0.034 21.8 7.6 15 116-130 180-194 (452)
No 1
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=13.24 E-value=2.1e+02 Score=22.36 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.3
Q ss_pred hHHHHHHHhhhCHHHHH--HHHHHHHHHhCCCC
Q 016329 9 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 39 (391)
Q Consensus 9 em~kIqeKYk~Dqek~q--qEm~kLYKk~GVNP 39 (391)
-+++|+.+|.++++... .++++-|++..++.
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~ 45 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHccccc
Confidence 47899999999887654 58999999998863
No 2
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=11.59 E-value=2.7e+02 Score=25.33 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHH-hCCCCCcChhH----------HHHHHHHHHHHHHHHHhh
Q 016329 26 LETARLYKL-AGINPLAGCLP----------TLATIPVWIGLYRALSNV 63 (391)
Q Consensus 26 qEm~kLYKk-~GVNPlaGCLP----------mLIQIPIFigLY~vLr~~ 63 (391)
..+.+|||+ +|..|-+|.|| .=|+--+|+.+|+.+..-
T Consensus 38 ~rl~rLyke~~G~spPkG~lPfS~dWf~tw~~nIhsSlf~~iY~~l~~~ 86 (192)
T 2avu_E 38 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKT 86 (192)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHhCccHhHHHHHHHHHHHHHHhc
Confidence 567789996 66999999998 227888888898888773
No 3
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=11.07 E-value=7.7e+02 Score=23.02 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016329 116 LVLPVLLVVSQYISV 130 (391)
Q Consensus 116 lILPVL~~~s~~ls~ 130 (391)
+++|+++.+..|...
T Consensus 298 ~~ip~~ii~~~y~~I 312 (434)
T 4ea3_A 298 FIVPVLVISVCYSLM 312 (434)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666555543
No 4
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=10.92 E-value=2.2e+02 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhCHHHHH--HHHHHHHHHhCCC
Q 016329 9 QVKAIQERYAGDQERIQ--LETARLYKLAGIN 38 (391)
Q Consensus 9 em~kIqeKYk~Dqek~q--qEm~kLYKk~GVN 38 (391)
-++++++++.++++... .++|+-|+...++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 47899999998877654 4888999887654
No 5
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=10.55 E-value=2.5e+02 Score=22.05 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred hHHHHHHHhhhCHHHHH--HHHHHHHHHhC
Q 016329 9 QVKAIQERYAGDQERIQ--LETARLYKLAG 36 (391)
Q Consensus 9 em~kIqeKYk~Dqek~q--qEm~kLYKk~G 36 (391)
-+++|+.+|.++++... .++++-|++..
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 37899999999887654 47888887653
No 6
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=9.53 E-value=2.9e+02 Score=21.01 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=23.7
Q ss_pred hhHHHHHHHhhhCHHHHH--HHHHHHHHHhCCC
Q 016329 8 PQVKAIQERYAGDQERIQ--LETARLYKLAGIN 38 (391)
Q Consensus 8 Pem~kIqeKYk~Dqek~q--qEm~kLYKk~GVN 38 (391)
--++++++++.++++... .++++-|+...++
T Consensus 9 ~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 9 TYLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 347899999998877654 4888888886654
No 7
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=8.64 E-value=2.9e+02 Score=22.53 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.4
Q ss_pred hHHHHHHHhhhCHHHHH--HHHHHHHHHhCCCC
Q 016329 9 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 39 (391)
Q Consensus 9 em~kIqeKYk~Dqek~q--qEm~kLYKk~GVNP 39 (391)
-+++|+.+|.++++... .++++-|++..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 47899999999887654 58999999988874
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=8.16 E-value=1.6e+02 Score=25.78 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=22.5
Q ss_pred hhchhHHHHHHHhhhCHHHH-HHHHHHHHHH
Q 016329 5 SLAPQVKAIQERYAGDQERI-QLETARLYKL 34 (391)
Q Consensus 5 ~lQPem~kIqeKYk~Dqek~-qqEm~kLYKk 34 (391)
.|.|++.+|++|.++|=.++ .+|..+||+-
T Consensus 32 ~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 32 NLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 46899999999999984443 4566677773
No 9
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=7.81 E-value=3.6e+02 Score=20.98 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcC---hhHHHH
Q 016329 21 QERIQLETARLYKLAGINPLAG---CLPTLA 48 (391)
Q Consensus 21 qek~qqEm~kLYKk~GVNPlaG---CLPmLI 48 (391)
.+.....-++|.+++||+|... +++.++
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~ 46 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 4556677889999999999874 555443
No 10
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=7.81 E-value=1e+03 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 016329 116 LVLPVLLVVSQYISV 130 (391)
Q Consensus 116 lILPVL~~~s~~ls~ 130 (391)
+++|+++.+..|+.+
T Consensus 180 ~~~p~~ii~~~y~~I 194 (452)
T 3rze_A 180 FYLPTLLMLWFYAKI 194 (452)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777776666543
Done!